60S ribosomal protein L35a

Overview
Name60S ribosomal protein L35a
Smed IDSMED30026049
Length (bp)455
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 60S ribosomal protein L35a (SMED30026049) t-SNE clustered cells

Violin plots show distribution of expression levels for 60S ribosomal protein L35a (SMED30026049) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 60S ribosomal protein L35a (SMED30026049) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 60S ribosomal protein L35a (SMED30026049) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30026049

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 14

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30026049SMESG000003977.1 SmedASXL_003085SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30026049SMESG000003977.1 dd_Smed_v4_318_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30026049SMESG000003977.1 dd_Smed_v4_318_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30026049SMESG000003977.1 dd_Smed_v4_318_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30026049SMESG000003977.1 dd_Smed_v4_318_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30026049SMESG000003977.1 dd_Smed_v4_318_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30026049SMESG000003977.1 dd_Smed_v4_318_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30026049SMESG000003977.1 dd_Smed_v4_318_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30026049SMESG000003977.1 dd_Smed_v4_318_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30026049SMESG000003977.1 dd_Smed_v4_318_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30026049SMESG000003977.1 dd_Smed_v6_318_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
reproductive organSMED30026049SMESG000003979.1 SMESG000003977.1 Contig29587newmark_estsPMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30026049SMESG000003979.1 SMESG000003977.1 Contig29587uc_Smed_v2PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
testisSMED30026049SMESG000003977.1 PL03018B2G11ncbi_smed_estsPMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Homology
BLAST of 60S ribosomal protein L35a vs. Ensembl Human
Match: RPL35A (ribosomal protein L35a [Source:HGNC Symbol;Acc:HGNC:10345])

HSP 1 Score: 143.28 bits (360), Expect = 1.718e-44
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK   +  G  +  K R++WGKV +AHG SG VRA+F+ NLP +A+G RIR+MLYPSRI
Sbjct:    3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of 60S ribosomal protein L35a vs. Ensembl Human
Match: RPL35A (ribosomal protein L35a [Source:HGNC Symbol;Acc:HGNC:10345])

HSP 1 Score: 143.28 bits (360), Expect = 1.718e-44
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK   +  G  +  K R++WGKV +AHG SG VRA+F+ NLP +A+G RIR+MLYPSRI
Sbjct:    3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of 60S ribosomal protein L35a vs. Ensembl Human
Match: RPL35A (ribosomal protein L35a [Source:HGNC Symbol;Acc:HGNC:10345])

HSP 1 Score: 117.087 bits (292), Expect = 2.210e-34
Identity = 53/92 (57.61%), Postives = 71/92 (77.17%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLP 374
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK   +  G  +  K R++WGKV +AHG SG VRA+F+ NLP
Sbjct:    3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLP 93          
BLAST of 60S ribosomal protein L35a vs. Ensembl Human
Match: RPL35A (ribosomal protein L35a [Source:HGNC Symbol;Acc:HGNC:10345])

HSP 1 Score: 79.337 bits (194), Expect = 5.057e-20
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKK 257
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAKK
Sbjct:    3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKK 55          
BLAST of 60S ribosomal protein L35a vs. Ensembl Human
Match: RPL35A (ribosomal protein L35a [Source:HGNC Symbol;Acc:HGNC:10345])

HSP 1 Score: 77.7962 bits (190), Expect = 1.789e-19
Identity = 34/52 (65.38%), Postives = 45/52 (86.54%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAK 254
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK
Sbjct:    3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAK 54          
BLAST of 60S ribosomal protein L35a vs. Ensembl Celegans
Match: rpl-33 (60S ribosomal protein L35a [Source:UniProtKB/Swiss-Prot;Acc:P49180])

HSP 1 Score: 137.887 bits (346), Expect = 1.391e-42
Identity = 60/124 (48.39%), Postives = 88/124 (70.97%), Query Frame = 3
Query:   57 MSSEKVSNKSTTPI-GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            M+   V+ + + P  GRLYVKA+FTG++RGLR Q E+T+LL+++GV  ++D  FY GK+  ++YKA    +K G    T+ R +WGK+ + HG +GAVRA+F  N+P  A+GKRIR++LYPS I
Sbjct:    1 MADTAVARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124          
BLAST of 60S ribosomal protein L35a vs. Ensembl Celegans
Match: rpl-33 (60S ribosomal protein L35a [Source:UniProtKB/Swiss-Prot;Acc:P49180])

HSP 1 Score: 137.887 bits (346), Expect = 1.391e-42
Identity = 60/124 (48.39%), Postives = 88/124 (70.97%), Query Frame = 3
Query:   57 MSSEKVSNKSTTPI-GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            M+   V+ + + P  GRLYVKA+FTG++RGLR Q E+T+LL+++GV  ++D  FY GK+  ++YKA    +K G    T+ R +WGK+ + HG +GAVRA+F  N+P  A+GKRIR++LYPS I
Sbjct:    1 MADTAVARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124          
BLAST of 60S ribosomal protein L35a vs. Ensembl Celegans
Match: rpl-33 (60S ribosomal protein L35a [Source:UniProtKB/Swiss-Prot;Acc:P49180])

HSP 1 Score: 137.887 bits (346), Expect = 1.391e-42
Identity = 60/124 (48.39%), Postives = 88/124 (70.97%), Query Frame = 3
Query:   57 MSSEKVSNKSTTPI-GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            M+   V+ + + P  GRLYVKA+FTG++RGLR Q E+T+LL+++GV  ++D  FY GK+  ++YKA    +K G    T+ R +WGK+ + HG +GAVRA+F  N+P  A+GKRIR++LYPS I
Sbjct:    1 MADTAVARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124          
BLAST of 60S ribosomal protein L35a vs. Ensembl Fly
Match: RpL35A (gene:FBgn0037328 transcript:FBtr0078769)

HSP 1 Score: 150.599 bits (379), Expect = 4.027e-47
Identity = 73/123 (59.35%), Postives = 91/123 (73.98%), Query Frame = 3
Query:   60 SSEKVSNKSTTPIGRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAK-KAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            S  KVS K     GRL+ KAVFTGY+RGLRNQHEN A+L+I+G   ++   FY+GK+C +VYKA+ K  +    + KT+VR VWGKV + HG +GAVRA+F +NLPG AMG RIRIMLYPSRI
Sbjct:   35 SEAKVSAKKYKRHGRLFAKAVFTGYKRGLRNQHENQAILKIEGARRKEHGSFYVGKRCVYVYKAETKKCVPQHPERKTRVRAVWGKVTRIHGNTGAVRARFNRNLPGHAMGHRIRIMLYPSRI 157          
BLAST of 60S ribosomal protein L35a vs. Ensembl Zebrafish
Match: rpl35a (ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190])

HSP 1 Score: 139.813 bits (351), Expect = 2.521e-43
Identity = 63/109 (57.80%), Postives = 85/109 (77.98%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+++GV  + + +FY+GK+C +VYKAKK     G  +  K R++WGKV +AHG SG VRA+FK NLP +A+G RIR+MLYPSR+
Sbjct:    3 GRLWSKAIFAGYKRGLRNQREHTALLKLEGVYNRGEVDFYLGKRCAYVYKAKKKTATPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFKSNLPAKAIGHRIRVMLYPSRV 110          
BLAST of 60S ribosomal protein L35a vs. Ensembl Zebrafish
Match: rpl35a (ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190])

HSP 1 Score: 139.813 bits (351), Expect = 2.521e-43
Identity = 63/109 (57.80%), Postives = 85/109 (77.98%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+++GV  + + +FY+GK+C +VYKAKK     G  +  K R++WGKV +AHG SG VRA+FK NLP +A+G RIR+MLYPSR+
Sbjct:    3 GRLWSKAIFAGYKRGLRNQREHTALLKLEGVYNRGEVDFYLGKRCAYVYKAKKKTATPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFKSNLPAKAIGHRIRVMLYPSRV 110          
BLAST of 60S ribosomal protein L35a vs. Ensembl Zebrafish
Match: rpl35a (ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190])

HSP 1 Score: 139.813 bits (351), Expect = 2.521e-43
Identity = 63/109 (57.80%), Postives = 85/109 (77.98%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+++GV  + + +FY+GK+C +VYKAKK     G  +  K R++WGKV +AHG SG VRA+FK NLP +A+G RIR+MLYPSR+
Sbjct:    3 GRLWSKAIFAGYKRGLRNQREHTALLKLEGVYNRGEVDFYLGKRCAYVYKAKKKTATPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFKSNLPAKAIGHRIRVMLYPSRV 110          
BLAST of 60S ribosomal protein L35a vs. Ensembl Xenopus
Match: rpl35a (ribosomal protein L35a [Source:NCBI gene;Acc:448717])

HSP 1 Score: 141.354 bits (355), Expect = 8.300e-44
Identity = 64/109 (58.72%), Postives = 85/109 (77.98%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK   +  G  +  + R++WGKV +AHG SG VRA+F+ NLP +A+G RIR+MLYPSRI
Sbjct:    3 GRLWSKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-GKPNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of 60S ribosomal protein L35a vs. Ensembl Mouse
Match: Rpl35a (ribosomal protein L35A [Source:MGI Symbol;Acc:MGI:1928894])

HSP 1 Score: 142.895 bits (359), Expect = 1.656e-44
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK   +  G  +  K R++WGKV +AHG SG VRA+F+ NLP +A+G RIR+MLYPSRI
Sbjct:    3 GRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of 60S ribosomal protein L35a vs. Ensembl Mouse
Match: Rpl35a (ribosomal protein L35A [Source:MGI Symbol;Acc:MGI:1928894])

HSP 1 Score: 142.895 bits (359), Expect = 1.656e-44
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK   +  G  +  K R++WGKV +AHG SG VRA+F+ NLP +A+G RIR+MLYPSRI
Sbjct:    3 GRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of 60S ribosomal protein L35a vs. Ensembl Mouse
Match: Rpl35a (ribosomal protein L35A [Source:MGI Symbol;Acc:MGI:1928894])

HSP 1 Score: 142.895 bits (359), Expect = 1.656e-44
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK   +  G  +  K R++WGKV +AHG SG VRA+F+ NLP +A+G RIR+MLYPSRI
Sbjct:    3 GRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of 60S ribosomal protein L35a vs. Ensembl Mouse
Match: Rpl35a (ribosomal protein L35A [Source:MGI Symbol;Acc:MGI:1928894])

HSP 1 Score: 142.895 bits (359), Expect = 1.656e-44
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK   +  G  +  K R++WGKV +AHG SG VRA+F+ NLP +A+G RIR+MLYPSRI
Sbjct:    3 GRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of 60S ribosomal protein L35a vs. Ensembl Mouse
Match: Rpl35a (ribosomal protein L35A [Source:MGI Symbol;Acc:MGI:1928894])

HSP 1 Score: 142.895 bits (359), Expect = 1.656e-44
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK   +  G  +  K R++WGKV +AHG SG VRA+F+ NLP +A+G RIR+MLYPSRI
Sbjct:    3 GRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of 60S ribosomal protein L35a vs. UniProt/SwissProt
Match: sp|Q5R8K6|RL35A_PONAB (60S ribosomal protein L35a OS=Pongo abelii OX=9601 GN=RPL35A PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.252e-44
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK   +  G  +  K R++WGKV +AHG SG VRA+F+ NLP +A+G RIR+MLYPSRI
Sbjct:    3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of 60S ribosomal protein L35a vs. UniProt/SwissProt
Match: sp|P61272|RL35A_MACFA (60S ribosomal protein L35a OS=Macaca fascicularis OX=9541 GN=RPL35A PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.252e-44
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK   +  G  +  K R++WGKV +AHG SG VRA+F+ NLP +A+G RIR+MLYPSRI
Sbjct:    3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of 60S ribosomal protein L35a vs. UniProt/SwissProt
Match: sp|P18077|RL35A_HUMAN (60S ribosomal protein L35a OS=Homo sapiens OX=9606 GN=RPL35A PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 8.252e-44
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK   +  G  +  K R++WGKV +AHG SG VRA+F+ NLP +A+G RIR+MLYPSRI
Sbjct:    3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of 60S ribosomal protein L35a vs. UniProt/SwissProt
Match: sp|P04646|RL35A_RAT (60S ribosomal protein L35a OS=Rattus norvegicus OX=10116 GN=Rpl35a PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.158e-43
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK   +  G  +  K R++WGKV +AHG SG VRA+F+ NLP +A+G RIR+MLYPSRI
Sbjct:    3 GRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of 60S ribosomal protein L35a vs. UniProt/SwissProt
Match: sp|O55142|RL35A_MOUSE (60S ribosomal protein L35a OS=Mus musculus OX=10090 GN=Rpl35a PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.158e-43
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+I+GV  + +TEFY+GK+C +VYKAK   +  G  +  K R++WGKV +AHG SG VRA+F+ NLP +A+G RIR+MLYPSRI
Sbjct:    3 GRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of 60S ribosomal protein L35a vs. TrEMBL
Match: A0A1S3K6P9 (60S ribosomal protein L35a OS=Lingula unguis OX=7574 GN=LOC106179120 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 5.856e-53
Identity = 74/123 (60.16%), Postives = 99/123 (80.49%), Query Frame = 3
Query:   57 MSSEKVSNKSTTPIGRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            M+ ++         GRLYVKAVFTGY+RGLRNQHENT+LL+++GVT +K TEFY+GK+CC+VYKAK  +   G D+ +++R++WGKV + HG SGAVRA+F+KNLP  AMGKR+R+MLYPSR+
Sbjct:    1 MADQEAKQNPPKKSGRLYVKAVFTGYKRGLRNQHENTSLLKLEGVTTKKATEFYLGKRCCYVYKAKNKSACPGHDKASRIRVIWGKVTRPHGNSGAVRAKFRKNLPASAMGKRVRVMLYPSRV 123          
BLAST of 60S ribosomal protein L35a vs. TrEMBL
Match: A0A0R3SEQ5 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS3263 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 6.569e-53
Identity = 80/128 (62.50%), Postives = 100/128 (78.12%), Query Frame = 3
Query:   57 MSSEKVSNKSTTPI-----GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            MS EK S  +   +     GRLYVKAVFTGYRRGLRNQHENTALL+IDGV   K+TEFY+GK+C ++Y+A+K          T++R++WGK+IK HGRSGAVRAQFK+NLP +AMG+RIR+MLYPSR+
Sbjct:    1 MSEEKASAPTVKRVRQKQPGRLYVKAVFTGYRRGLRNQHENTALLKIDGVHTAKETEFYMGKRCAYIYRAEKKKHLPRRHNPTRIRVIWGKIIKPHGRSGAVRAQFKRNLPAKAMGQRIRVMLYPSRV 128          
BLAST of 60S ribosomal protein L35a vs. TrEMBL
Match: A0A0R3U4Z7 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS1754 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.714e-52
Identity = 74/109 (67.89%), Postives = 95/109 (87.16%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRLYVKA+FTGYRRGLRNQHENTALL+IDGV   ++TEFY+GK+C ++Y+A+K        + TK+R++WGK++K HGRSGAVRA+FK+NLPG+AMGKRIR+MLYPSR+
Sbjct:   20 GRLYVKAIFTGYRRGLRNQHENTALLKIDGVNTARETEFYMGKRCAYIYRAEKKKQLPRRHKPTKIRVIWGKIVKPHGRSGAVRARFKRNLPGKAMGKRIRVMLYPSRV 128          
BLAST of 60S ribosomal protein L35a vs. TrEMBL
Match: A0A3P7T8N8 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS9100 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.207e-51
Identity = 76/109 (69.72%), Postives = 94/109 (86.24%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRLYVKAVFTGYRRGLRNQHENTALL+IDGV   K+TEFY+GK+C ++Y+A+K        + T++R+VWGK+IK HGRSGAVRAQFK+NLP +AMG+RIR+MLYPSR+
Sbjct:   40 GRLYVKAVFTGYRRGLRNQHENTALLKIDGVHTAKETEFYMGKRCAYIYRAEKKKQLPRRHKPTRIRVVWGKIIKPHGRSGAVRAQFKRNLPAKAMGQRIRVMLYPSRV 148          
BLAST of 60S ribosomal protein L35a vs. TrEMBL
Match: A0A0R3TNW1 (Uncharacterized protein OS=Rodentolepis nana OX=102285 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.220e-51
Identity = 76/109 (69.72%), Postives = 94/109 (86.24%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRLYVKAVFTGYRRGLRNQHENTALL+IDGV   K+TEFY+GK+C ++Y+A+K        + T++R+VWGK+IK HGRSGAVRAQFK+NLP +AMG+RIR+MLYPSR+
Sbjct:   40 GRLYVKAVFTGYRRGLRNQHENTALLKIDGVHTAKETEFYMGKRCAYIYRAEKKKQLPRRHKPTRIRVVWGKIIKPHGRSGAVRAQFKRNLPAKAMGQRIRVMLYPSRV 148          
BLAST of 60S ribosomal protein L35a vs. Ensembl Cavefish
Match: rpl35a (60S ribosomal protein L35a [Source:NCBI gene;Acc:111189478])

HSP 1 Score: 139.428 bits (350), Expect = 3.133e-43
Identity = 61/109 (55.96%), Postives = 86/109 (78.90%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            GRL+ KA+F GY+RGLRNQ E+TALL+++GV  +++ +FY+GK+C +VYKAKK  +  G  +  K R++WGKV +AHG SG VRA+F  NLP +A+G RIR+M+YPSR+
Sbjct:    3 GRLWCKAIFAGYKRGLRNQREHTALLKVEGVYTRQEVDFYLGKRCAYVYKAKKNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFSSNLPAKAIGHRIRVMMYPSRV 110          
BLAST of 60S ribosomal protein L35a vs. Ensembl Cavefish
Match: rpl35a (60S ribosomal protein L35a [Source:NCBI gene;Acc:111189478])

HSP 1 Score: 136.732 bits (343), Expect = 3.788e-42
Identity = 60/109 (55.05%), Postives = 85/109 (77.98%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            G L+ KA+F GY+RGLRNQ E+TALL+++GV  +++ +FY+GK+C +VYKAKK  +  G  +  K R++WGKV +AHG SG VRA+F  NLP +A+G RIR+M+YPSR+
Sbjct:    3 GWLWCKAIFAGYKRGLRNQREHTALLKVEGVYTRQEVDFYLGKRCAYVYKAKKNTVTPG-GKPNKTRVIWGKVTRAHGNSGMVRAKFSSNLPAKAIGHRIRVMMYPSRV 110          
BLAST of 60S ribosomal protein L35a vs. Ensembl Cavefish
Match: RPL35A (ribosomal protein L35a [Source:HGNC Symbol;Acc:HGNC:10345])

HSP 1 Score: 97.4413 bits (241), Expect = 8.399e-27
Identity = 43/81 (53.09%), Postives = 62/81 (76.54%), Query Frame = 3
Query:   99 GRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSG 341
            GRL+ KA+F GY+RGLRNQ E+TALL+++GV  +++ +FY+GK+C +VYKAKK  +  G  +  K R++WGKV +AHG  G
Sbjct:    3 GRLWCKAIFAGYKRGLRNQREHTALLKVEGVYTRQEVDFYLGKRCAYVYKAKKNTVTPG-GKPNKTRVIWGKVTRAHGNKG 82          
BLAST of 60S ribosomal protein L35a vs. Ensembl Sea Lamprey
Match: rpl35a (ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190])

HSP 1 Score: 150.214 bits (378), Expect = 4.366e-48
Identity = 68/111 (61.26%), Postives = 91/111 (81.98%), Query Frame = 3
Query:   93 PIGRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            P  RL+ KA+FTGY+RGLRNQHE+TALL+I+GV  + +T FY+GK+C +VYKA+K  +  G  +  K R++WGKV+++HG SG VRA+F+KNLPG+AMG RIR+MLYPSRI
Sbjct:    9 PGCRLWCKAIFTGYKRGLRNQHEHTALLKIEGVYTRGETGFYLGKRCAYVYKARKNTLTPG-GKPNKTRVIWGKVMRSHGNSGVVRAKFRKNLPGKAMGHRIRVMLYPSRI 118          
BLAST of 60S ribosomal protein L35a vs. Ensembl Yeast
Match: RPL33A (Ribosomal 60S subunit protein L33A; N-terminally acetylated; rpl33a null mutant exhibits slow growth while rpl33a rpl33b double null mutant is inviable; homologous to mammalian ribosomal protein L35A, no bacterial homolog; RPL33A has a paralog, RPL33B, that arose from the whole genome duplication [Source:SGD;Acc:S000006064])

HSP 1 Score: 102.834 bits (255), Expect = 8.591e-30
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  102 RLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            RLYVK     Y+R  R  + N +L++I+GV   +D +FY+GK+  +VY+A K          +K+R++WGKV + HG SG VRA F+ NLP +  G  +RI LYPS I
Sbjct:    6 RLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEV------RGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of 60S ribosomal protein L35a vs. Ensembl Yeast
Match: RPL33B (Ribosomal 60S subunit protein L33B; rpl33b null mutant exhibits normal growth while rpl33a rpl33b double null mutant is inviable; homologous to mammalian ribosomal protein L35A, no bacterial homolog; RPL33B has a paralog, RPL33A, that arose from the whole genome duplication [Source:SGD;Acc:S000005760])

HSP 1 Score: 100.908 bits (250), Expect = 5.117e-29
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  102 RLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            RLYVK     Y+R  R  + N +L++I+GV   ++ +FY+GK+  +VY+A K          +K+R++WGKV + HG SG VRA F+ NLP +  G  +RI LYPS I
Sbjct:    6 RLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEV------RGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of 60S ribosomal protein L35a vs. Ensembl Nematostella
Match: EDO46062 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR70])

HSP 1 Score: 142.895 bits (359), Expect = 5.036e-45
Identity = 61/108 (56.48%), Postives = 85/108 (78.70%), Query Frame = 3
Query:  102 RLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            RLY K +  G++RGLRNQH NT+L++I+GV E+K+TEFY+GK+  FVY+AK   +  G  + TK+R++WGKV +AHG SG VRA+F+ NLP +AMG  +R+MLYPSR+
Sbjct:    6 RLYTKGIVLGFKRGLRNQHPNTSLVKIEGVDERKNTEFYLGKRLAFVYRAKNKTVAKGDKKATKLRVIWGKVTRAHGNSGVVRAKFRHNLPPKAMGATVRVMLYPSRV 113          
BLAST of 60S ribosomal protein L35a vs. Ensembl Medaka
Match: rpl35a (ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190])

HSP 1 Score: 67.3958 bits (163), Expect = 1.604e-15
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 3
Query:  102 RLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYK 248
            RL+ KA+FTGY+RGLRNQ E+TALL+++G   +   +FY+GK+C +VYK
Sbjct:    4 RLWSKAIFTGYKRGLRNQREHTALLKLEGCYSRDQVDFYLGKRCAYVYK 52          
BLAST of 60S ribosomal protein L35a vs. Planmine SMEST
Match: SMESG000003977.1 (SMESG000003977.1)

HSP 1 Score: 253.062 bits (645), Expect = 3.529e-88
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 3
Query:   57 MSSEKVSNKSTTPIGRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 425
            MSSEKVSNKSTTPIGRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGF+EKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI
Sbjct:    1 MSSEKVSNKSTTPIGRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKDTEFYIGKKCCFVYKAKKAAMKAGFEEKTKVRIVWGKVIKAHGRSGAVRAQFKKNLPGQAMGKRIRIMLYPSRI 123          
The following BLAST results are available for this feature:
BLAST of 60S ribosomal protein L35a vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RPL35A1.718e-4459.63ribosomal protein L35a [Source:HGNC Symbol;Acc:HGN... [more]
RPL35A1.718e-4459.63ribosomal protein L35a [Source:HGNC Symbol;Acc:HGN... [more]
RPL35A2.210e-3457.61ribosomal protein L35a [Source:HGNC Symbol;Acc:HGN... [more]
RPL35A5.057e-2066.04ribosomal protein L35a [Source:HGNC Symbol;Acc:HGN... [more]
RPL35A1.789e-1965.38ribosomal protein L35a [Source:HGNC Symbol;Acc:HGN... [more]
back to top
BLAST of 60S ribosomal protein L35a vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rpl-331.391e-4248.3960S ribosomal protein L35a [Source:UniProtKB/Swis... [more]
rpl-331.391e-4248.3960S ribosomal protein L35a [Source:UniProtKB/Swis... [more]
rpl-331.391e-4248.3960S ribosomal protein L35a [Source:UniProtKB/Swis... [more]
back to top
BLAST of 60S ribosomal protein L35a vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
RpL35A4.027e-4759.35gene:FBgn0037328 transcript:FBtr0078769[more]
back to top
BLAST of 60S ribosomal protein L35a vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rpl35a2.521e-4357.80ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-0... [more]
rpl35a2.521e-4357.80ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-0... [more]
rpl35a2.521e-4357.80ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-0... [more]
back to top
BLAST of 60S ribosomal protein L35a vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl35a8.300e-4458.72ribosomal protein L35a [Source:NCBI gene;Acc:44871... [more]
back to top
BLAST of 60S ribosomal protein L35a vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rpl35a1.656e-4459.63ribosomal protein L35A [Source:MGI Symbol;Acc:MGI:... [more]
Rpl35a1.656e-4459.63ribosomal protein L35A [Source:MGI Symbol;Acc:MGI:... [more]
Rpl35a1.656e-4459.63ribosomal protein L35A [Source:MGI Symbol;Acc:MGI:... [more]
Rpl35a1.656e-4459.63ribosomal protein L35A [Source:MGI Symbol;Acc:MGI:... [more]
Rpl35a1.656e-4459.63ribosomal protein L35A [Source:MGI Symbol;Acc:MGI:... [more]
back to top
BLAST of 60S ribosomal protein L35a vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q5R8K6|RL35A_PONAB8.252e-4459.6360S ribosomal protein L35a OS=Pongo abelii OX=9601... [more]
sp|P61272|RL35A_MACFA8.252e-4459.6360S ribosomal protein L35a OS=Macaca fascicularis ... [more]
sp|P18077|RL35A_HUMAN8.252e-4459.6360S ribosomal protein L35a OS=Homo sapiens OX=9606... [more]
sp|P04646|RL35A_RAT1.158e-4359.6360S ribosomal protein L35a OS=Rattus norvegicus OX... [more]
sp|O55142|RL35A_MOUSE1.158e-4359.6360S ribosomal protein L35a OS=Mus musculus OX=1009... [more]
back to top
BLAST of 60S ribosomal protein L35a vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1S3K6P95.856e-5360.1660S ribosomal protein L35a OS=Lingula unguis OX=75... [more]
A0A0R3SEQ56.569e-5362.50Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A0R3U4Z74.714e-5267.89Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A3P7T8N81.207e-5169.72Uncharacterized protein OS=Rodentolepis nana OX=10... [more]
A0A0R3TNW11.220e-5169.72Uncharacterized protein OS=Rodentolepis nana OX=10... [more]
back to top
BLAST of 60S ribosomal protein L35a vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rpl35a3.133e-4355.9660S ribosomal protein L35a [Source:NCBI gene;Acc:1... [more]
rpl35a3.788e-4255.0560S ribosomal protein L35a [Source:NCBI gene;Acc:1... [more]
RPL35A8.399e-2753.09ribosomal protein L35a [Source:HGNC Symbol;Acc:HGN... [more]
back to top
BLAST of 60S ribosomal protein L35a vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl35a4.366e-4861.26ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-0... [more]
back to top
BLAST of 60S ribosomal protein L35a vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
RPL33A8.591e-3043.52Ribosomal 60S subunit protein L33A; N-terminally a... [more]
RPL33B5.117e-2942.59Ribosomal 60S subunit protein L33B; rpl33b null mu... [more]
back to top
BLAST of 60S ribosomal protein L35a vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO460625.036e-4556.48Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of 60S ribosomal protein L35a vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl35a1.604e-1557.14ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-0... [more]
back to top
BLAST of 60S ribosomal protein L35a vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000003977.13.529e-8899.19SMESG000003977.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30026049 ID=SMED30026049|Name=60S ribosomal protein L35a|organism=Schmidtea mediterranea sexual|type=transcript|length=455bp
TTTTTTTGTTTAAATACTTTAATAGTTTTCATTTAGAAAAGATTTAAATT
TCTTAAATGTCATCAGAAAAAGTTAGTAATAAATCAACCACACCAATTGG
TCGTCTTTACGTTAAAGCTGTTTTCACTGGTTACCGTAGAGGATTAAGAA
ATCAACATGAAAACACTGCTCTTTTGAGAATTGATGGTGTTACTGAACAA
AAAGATACTGAATTTTACATTGGTAAAAAATGCTGTTTCGTCTACAAAGC
TAAAAAAGCAGCAATGAAAGCTGGTTTTGATGAAAAAACTAAAGTCAGAA
TTGTTTGGGGTAAAGTCATTAAAGCTCATGGCAGAAGTGGTGCTGTTAGA
GCTCAATTCAAGAAAAACCTCCCTGGACAAGCTATGGGAAAAAGAATTCG
TATTATGCTCTACCCATCAAGAATATAATTTTCTTAATAAAATATTGGAA
TAATT
back to top

protein sequence of SMED30026049-orf-1

>SMED30026049-orf-1 ID=SMED30026049-orf-1|Name=SMED30026049-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=124bp
MSSEKVSNKSTTPIGRLYVKAVFTGYRRGLRNQHENTALLRIDGVTEQKD
TEFYIGKKCCFVYKAKKAAMKAGFDEKTKVRIVWGKVIKAHGRSGAVRAQ
FKKNLPGQAMGKRIRIMLYPSRI*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000208testis
PLANA:0000429neoblast
PLANA:0002032epidermal cell
PLANA:0002089reproductive organ
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR038661L35A_sf
IPR001780Ribosomal_L35A
IPR009000Transl_B-barrel_sf
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: cellular component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: biological process
TermDefinition
GO:0006412translation
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001780Ribosomal protein L35APFAMPF01247Ribosomal_L35Aecoord: 17..117
e-value: 4.6E-42
score: 142.1
IPR001780Ribosomal protein L35APANTHERPTHR1090260S RIBOSOMAL PROTEIN L35Acoord: 10..123
IPR038661Ribosomal protein L35A superfamilyGENE3DG3DSA:2.40.10.190coord: 14..123
e-value: 1.0E-49
score: 169.1
NoneNo IPR availablePRODOMPD012670coord: 19..116
e-value: 1.0E-34
score: 360.0
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILYSSF50447Translation proteinscoord: 17..117