SMED30025931

Overview


Name	SMED30025931
Smed ID	SMED30025931
Length (bp)	1020

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30025931 (SMED30025931) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30025931 (SMED30025931) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30025931 (SMED30025931) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30025931 (SMED30025931) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30025931

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 9

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
pharynx	SMED30025931	SMESG000066313.1	dd_Smed_v4_2987_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30025931	SMESG000066313.1	dd_Smed_v4_2987_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30025931	SMESG000066313.1	dd_Smed_v4_2987_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30025931	SMESG000066313.1	dd_Smed_v4_2987_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30025931	SMESG000066313.1	dd_Smed_v4_2987_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30025931	SMESG000066313.1	dd_Smed_v4_2987_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Category 2 cell	SMED30025931	SMESG000066313.1	dd_Smed_v6_2987_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018
glial cell	SMED30025931	SMESG000066313.1	dd_Smed_v6_2987_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018
pigment cell	SMED30025931	SMESG000066313.1	dd_Smed_v6_2987_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018

Note: Hover over icons to view figure legend

Alignments

SMED30025931 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.014232:2288..3141 +	2419

Homology

[Close]

BLAST of SMED30025931 vs. Ensembl Human
Match: LRRC59 (leucine rich repeat containing 59 [Source:HGNC Symbol;Acc:HGNC:28817])

HSP 1 Score: 101.679 bits (252), Expect = 4.080e-24
Identity = 68/145 (46.90%), Postives = 91/145 (62.76%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQRVLEEEKQRE 597
             P    +DLSCN L  +  +   LT + KLDLSKNK+Q LP + G+LVNLQ+LDL +NKL +LP +   LK LKWLDLKDNPL+  L+K AGDCL+++QC +CA  VL  +    +            ++E  RQR LE E++ E
Sbjct:   38 LPKATILDLSCNKLTTLPSDFCGLTHLVKLDLSKNKLQQLPADFGRLVNLQHLDLLNNKLVTLPVSFAQLKNLKWLDLKDNPLDPVLAKVAGDCLDEKQCKQCANKVLQHMKAVQA------------DQERERQRRLEVEREAE 170

[Close]

BLAST of SMED30025931 vs. Ensembl Human
Match: LRRC28 (leucine rich repeat containing 28 [Source:HGNC Symbol;Acc:HGNC:28355])

HSP 1 Score: 55.8398 bits (133), Expect = 7.093e-9
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPE--TMC 366
            ++ +DLS N+LEI+ P IG L ++  L L+ N++QFLP E+G L  LQ LD+ +N+L +LPE   MC
Sbjct:   90 LQCLDLSDNALEIVCPEIGRLRALRHLRLANNQLQFLPPEVGDLKELQTLDISTNRLLTLPERLHMC 156

[Close]

BLAST of SMED30025931 vs. Ensembl Human
Match: LRRC28 (leucine rich repeat containing 28 [Source:HGNC Symbol;Acc:HGNC:28355])

HSP 1 Score: 56.225 bits (134), Expect = 2.734e-8
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPE--TMC 366
            ++ +DLS N+LEI+ P IG L ++  L L+ N++QFLP E+G L  LQ LD+ +N+L +LPE   MC
Sbjct:   45 LQCLDLSDNALEIVCPEIGRLRALRHLRLANNQLQFLPPEVGDLKELQTLDISTNRLLTLPERLHMC 111

[Close]

BLAST of SMED30025931 vs. Ensembl Human
Match: LRRC28 (leucine rich repeat containing 28 [Source:HGNC Symbol;Acc:HGNC:28355])

HSP 1 Score: 56.225 bits (134), Expect = 2.803e-8
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPE--TMC 366
            ++ +DLS N+LEI+ P IG L ++  L L+ N++QFLP E+G L  LQ LD+ +N+L +LPE   MC
Sbjct:   90 LQCLDLSDNALEIVCPEIGRLRALRHLRLANNQLQFLPPEVGDLKELQTLDISTNRLLTLPERLHMC 156

[Close]

BLAST of SMED30025931 vs. Ensembl Human
Match: LRRC28 (leucine rich repeat containing 28 [Source:HGNC Symbol;Acc:HGNC:28355])

HSP 1 Score: 56.225 bits (134), Expect = 3.413e-8
Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETM 363
            ++ +DLS N+LEI+ P IG L ++  L L+ N++QFLP E+G L  LQ LD+ +N+L +LPE +
Sbjct:   90 LQCLDLSDNALEIVCPEIGRLRALRHLRLANNQLQFLPPEVGDLKELQTLDISTNRLLTLPERL 153

[Close]

BLAST of SMED30025931 vs. Ensembl Celegans
Match: F56A8.3 (pep chromosome:WBcel235:III:13256880:13262883:1 gene:WBGene00010139.1 transcript:F56A8.3a.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F56A8.3)

HSP 1 Score: 70.8626 bits (172), Expect = 3.438e-14
Identity = 47/148 (31.76%), Postives = 86/148 (58.11%), Query Frame = 1

Query:  157 IKFPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLD-FLNQAMSXXXXXXXXXXRREEEIMRQRVLEEEKQRE 597
            ++ P +  +DLS N++  +  +   +T + +LD    ++  LPD IG L +LQ+L+L +N++  LP +  NLK LKWLDLK NPLN+ L+  AG+C    +C + A  V+D ++ +          ++ + + ++  Q+  EEE+ ++
Sbjct:   35 VQLPRLTKLDLSSNAITFLPESFCKMTKLIRLDFGSCQLHHLPDGIGLLTSLQHLNLYNNQIEDLPLSFANLKSLKWLDLKKNPLNSKLAAIAGNCGTDAECKQAAKQVVDVYMGEQKKAIDSLKAQEAKHKAKV--QKAQEEERMKK 180

HSP 2 Score: 25.409 bits (54), Expect = 3.438e-14
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 2

Query:   26 IQIQKLIENDELDLSLQALNEIP 94
             +++ L E+DELDLS   + E P
Sbjct:    9 TELKNLQEDDELDLSASGIQEFP 31

[Close]

BLAST of SMED30025931 vs. Ensembl Celegans
Match: F56A8.3 (pep chromosome:WBcel235:III:13256880:13262883:1 gene:WBGene00010139.1 transcript:F56A8.3a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F56A8.3)

HSP 1 Score: 70.8626 bits (172), Expect = 3.438e-14
Identity = 47/148 (31.76%), Postives = 86/148 (58.11%), Query Frame = 1

Query:  157 IKFPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLD-FLNQAMSXXXXXXXXXXRREEEIMRQRVLEEEKQRE 597
            ++ P +  +DLS N++  +  +   +T + +LD    ++  LPD IG L +LQ+L+L +N++  LP +  NLK LKWLDLK NPLN+ L+  AG+C    +C + A  V+D ++ +          ++ + + ++  Q+  EEE+ ++
Sbjct:   35 VQLPRLTKLDLSSNAITFLPESFCKMTKLIRLDFGSCQLHHLPDGIGLLTSLQHLNLYNNQIEDLPLSFANLKSLKWLDLKKNPLNSKLAAIAGNCGTDAECKQAAKQVVDVYMGEQKKAIDSLKAQEAKHKAKV--QKAQEEERMKK 180

HSP 2 Score: 25.409 bits (54), Expect = 3.438e-14
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 2

Query:   26 IQIQKLIENDELDLSLQALNEIP 94
             +++ L E+DELDLS   + E P
Sbjct:    9 TELKNLQEDDELDLSASGIQEFP 31

[Close]

BLAST of SMED30025931 vs. Ensembl Celegans
Match: soc-2 (Leucine-rich repeat protein soc-2 [Source:UniProtKB/Swiss-Prot;Acc:Q22875])

HSP 1 Score: 51.2174 bits (121), Expect = 7.553e-7
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1

Query:  181 IDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
            +DLS   +  I   I  LT +T+L L KNK+  LP EIG+LVNL+ L L  N LTSLP+++ +
Sbjct:  150 LDLSSIEITSIPSPIKELTQLTELFLYKNKLTCLPTEIGQLVNLKKLGLSENALTSLPDSLAS 212

[Close]

BLAST of SMED30025931 vs. Ensembl Celegans
Match: soc-2 (Leucine-rich repeat protein soc-2 [Source:UniProtKB/Swiss-Prot;Acc:Q22875])

HSP 1 Score: 50.8322 bits (120), Expect = 8.815e-7
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1

Query:  181 IDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
            +DLS   +  I   I  LT +T+L L KNK+  LP EIG+LVNL+ L L  N LTSLP+++ +
Sbjct:   78 LDLSSIEITSIPSPIKELTQLTELFLYKNKLTCLPTEIGQLVNLKKLGLSENALTSLPDSLAS 140

[Close]

Query:  181 IDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
            +DLS   +  I   I  LT +T+L L KNK+  LP EIG+LVNL+ L L  N LTSLP+++ +
Sbjct:   78 LDLSSIEITSIPSPIKELTQLTELFLYKNKLTCLPTEIGQLVNLKKLGLSENALTSLPDSLAS 140

[Close]

BLAST of SMED30025931 vs. Ensembl Fly
Match: CG3408 (gene:FBgn0036008 transcript:FBtr0076426)

HSP 1 Score: 67.3958 bits (163), Expect = 9.850e-14
Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQRVLEEEKQR 594
            F  +  +DLS N L  +  N  +LT + +LDLSKN+I+FLP++ G+L  L++LDL +N L  LP +   L++L++LDLK NPL     K  G C  ++ C + A N +                   + E I R+R+  +E Q+
Sbjct:   41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPEDFGQLEQLRHLDLYNNCLEHLPISFGQLRRLRYLDLKGNPLTPAWEKIVGCCSTQKDCQQAAKNTVSIC-------------ANYKPEFIERERLAAQESQK 171

HSP 2 Score: 27.7202 bits (60), Expect = 9.850e-14
Identity = 10/31 (32.26%), Postives = 22/31 (70.97%), Query Frame = 2

Query:   23 KIQIQKLIENDELDLSLQALNEIPIKDIVYY 115
            K+ +++ + ++  DLSL  L+EIP+++I  +
Sbjct:   11 KVNVKERVVDETCDLSLSELSEIPVREIASF 41

[Close]

BLAST of SMED30025931 vs. Ensembl Fly
Match: CG3408 (gene:FBgn0036008 transcript:FBtr0333863)

HSP 1 Score: 67.781 bits (164), Expect = 2.218e-12
Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQRVLEEEKQR 594
            F  +  +DLS N L  +  N  +LT + +LDLSKN+I+FLP++ G+L  L++LDL +N L  LP +   L++L++LDLK NPL     K  G C  ++ C + A N +                   + E I R+R+  +E Q+
Sbjct:   37 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPEDFGQLEQLRHLDLYNNCLEHLPISFGQLRRLRYLDLKGNPLTPAWEKIVGCCSTQKDCQQAAKNTVSIC-------------ANYKPEFIERERLAAQESQK 167

[Close]

BLAST of SMED30025931 vs. Ensembl Fly
Match: scrib (gene:FBgn0263289 transcript:FBtr0308627)

HSP 1 Score: 56.6102 bits (135), Expect = 2.351e-8
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMC 366
             P +  + L  N L+ + P +GLLT +T LD+S+N+++ LP+EI  LV+L  LDL  N L +LP+ + 
Sbjct:  197 LPGLHELWLDHNQLQRLPPELGLLTKLTYLDVSENRLEELPNEISGLVSLTDLDLAQNLLEALPDGIA 264

HSP 2 Score: 52.373 bits (124), Expect = 4.439e-7
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLP 354
            +K +DL  N +E + P +G L  + +L L  N++Q LP E+G L  L YLD+  N+L  LP
Sbjct:  177 LKRLDLGDNEIEDLPPYLGYLPGLHELWLDHNQLQRLPPELGLLTKLTYLDVSENRLEELP 237

[Close]

BLAST of SMED30025931 vs. Ensembl Fly
Match: scrib (gene:FBgn0263289 transcript:FBtr0308626)

HSP 1 Score: 56.225 bits (134), Expect = 2.670e-8
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMC 366
             P +  + L  N L+ + P +GLLT +T LD+S+N+++ LP+EI  LV+L  LDL  N L +LP+ + 
Sbjct:  197 LPGLHELWLDHNQLQRLPPELGLLTKLTYLDVSENRLEELPNEISGLVSLTDLDLAQNLLEALPDGIA 264

HSP 2 Score: 52.373 bits (124), Expect = 4.736e-7
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLP 354
            +K +DL  N +E + P +G L  + +L L  N++Q LP E+G L  L YLD+  N+L  LP
Sbjct:  177 LKRLDLGDNEIEDLPPYLGYLPGLHELWLDHNQLQRLPPELGLLTKLTYLDVSENRLEELP 237

[Close]

BLAST of SMED30025931 vs. Ensembl Fly
Match: scrib (gene:FBgn0263289 transcript:FBtr0308633)

HSP 1 Score: 56.225 bits (134), Expect = 2.707e-8
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMC 366
             P +  + L  N L+ + P +GLLT +T LD+S+N+++ LP+EI  LV+L  LDL  N L +LP+ + 
Sbjct:  197 LPGLHELWLDHNQLQRLPPELGLLTKLTYLDVSENRLEELPNEISGLVSLTDLDLAQNLLEALPDGIA 264

HSP 2 Score: 52.373 bits (124), Expect = 5.059e-7
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLP 354
            +K +DL  N +E + P +G L  + +L L  N++Q LP E+G L  L YLD+  N+L  LP
Sbjct:  177 LKRLDLGDNEIEDLPPYLGYLPGLHELWLDHNQLQRLPPELGLLTKLTYLDVSENRLEELP 237

[Close]

BLAST of SMED30025931 vs. Ensembl Zebrafish
Match: lrrc59 (leucine rich repeat containing 59 [Source:NCBI gene;Acc:405868])

HSP 1 Score: 100.138 bits (248), Expect = 9.622e-24
Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFL 495
            FP    +DLSCN+L  +TP    LT + K+DL+KN++  LP+EIG+LVNLQ+LDL +NKL  LP     LK LKWLDLKDNPL   L+KAAGDCL+++QC +CA  VL  +
Sbjct:   36 FPKATFLDLSCNNLITLTPEFCSLTHLIKIDLNKNQLVCLPEEIGQLVNLQHLDLYNNKLKMLPIGFSQLKSLKWLDLKDNPLEPTLAKAAGDCLDEKQCRQCASRVLQHM 146

[Close]

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFL 495
            FP    +DLSCN+L  +TP    LT + K+DL+KN++  LP+EIG+LVNLQ+LDL +NKL  LP     LK LKWLDLKDNPL   L+KAAGDCL+++QC +CA  VL  +
Sbjct:   36 FPKATFLDLSCNNLITLTPEFCSLTHLIKIDLNKNQLVCLPEEIGQLVNLQHLDLYNNKLKMLPIGFSQLKSLKWLDLKDNPLEPTLAKAAGDCLDEKQCRQCASRVLQHM 146

[Close]

BLAST of SMED30025931 vs. Ensembl Zebrafish
Match: BX088692.1 (leucine rich repeat containing 28 [Source:NCBI gene;Acc:555592])

HSP 1 Score: 58.5362 bits (140), Expect = 2.774e-9
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETM 363
            ++S+DLS N+L+II P IG L S+  L L+ N+++FLP E+G L  L+ LD+  N L +LPE +
Sbjct:   64 LQSLDLSDNALQIICPEIGQLRSLRHLRLANNQLKFLPQELGDLRELETLDVSMNLLRTLPERL 127

[Close]

BLAST of SMED30025931 vs. Ensembl Zebrafish
Match: lrrc28 (leucine rich repeat containing 28 [Source:ZFIN;Acc:ZDB-GENE-061128-1])

HSP 1 Score: 58.5362 bits (140), Expect = 3.335e-9
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETM 363
            ++S+DLS N+L+II P IG L S+  L L+ N+++FLP E+G L  L+ LD+  N L +LPE +
Sbjct:   90 LQSLDLSDNALQIICPEIGQLRSLRHLRLANNQLKFLPQELGDLRELETLDVSMNLLRTLPERL 153

[Close]

BLAST of SMED30025931 vs. Ensembl Zebrafish
Match: lrrc7 (leucine rich repeat containing 7 [Source:ZFIN;Acc:ZDB-GENE-130530-876])

HSP 1 Score: 52.373 bits (124), Expect = 6.404e-7
Identity = 30/88 (34.09%), Postives = 43/88 (48.86%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTS-----------------------ITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMC 366
            ++  D SCN LE + P IG L S                       +T + L  NK++FLPDEIG++  L+ L+L  N+L +LP T  
Sbjct:  301 LEEFDCSCNELESLPPTIGYLHSLRTFAADENFLSDLPREIGNCRNVTVMSLRSNKLEFLPDEIGQMTKLRVLNLSDNRLKNLPFTFT 388

[Close]

BLAST of SMED30025931 vs. Ensembl Xenopus
Match: lrrc59 (leucine rich repeat containing 59 [Source:NCBI gene;Acc:407863])

HSP 1 Score: 100.908 bits (250), Expect = 7.719e-24
Identity = 65/152 (42.76%), Postives = 98/152 (64.47%), Query Frame = 1

Query:  157 IKFPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXR----REEEIMRQRVLEEEKQREI 600
            +  P   ++DLSCN L  +  +   L+ I +LDLSKN+I  LP E G+LVNLQ+LDL  N++ +LP +   LK LKWLDLKDNPL   L+K AGDCL+++QC +CA  VL ++    S   ++  +K +    R++ +  Q+ ++EE+ RE+
Sbjct:   80 VAIPKATALDLSCNKLTSLPDDFCNLSYIVRLDLSKNQIAQLPSEFGRLVNLQHLDLLQNRIVALPVSFAQLKSLKWLDLKDNPLKPALAKVAGDCLDEKQCKECAQGVLQYMKSVQSDHERELQRKLQLDKDRKQRLEAQQRVKEEQDREL 231

HSP 2 Score: 29.6462 bits (65), Expect = 7.719e-24
Identity = 11/22 (50.00%), Postives = 19/22 (86.36%), Query Frame = 2

Query:   44 IENDELDLSLQALNEIPIKDIV 109
            ++ +ELDLSL  L+E+P++D+V
Sbjct:   59 LDGNELDLSLSDLSEVPVRDLV 80

[Close]

BLAST of SMED30025931 vs. Ensembl Xenopus
Match: lrrc59 (leucine rich repeat containing 59 [Source:NCBI gene;Acc:407863])

HSP 1 Score: 95.9005 bits (237), Expect = 2.658e-22
Identity = 63/148 (42.57%), Postives = 92/148 (62.16%), Query Frame = 1

Query:  157 IKFPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQRVLEEEKQREI 600
            +  P   ++DLSCN L  +  +   L+ I +LDLSKN+I  LP E G+LVNLQ+LDL  N++ +LP +   LK LKWLDLKDNPL   L+K AGDCL+++QC +CA  V      + S  +        R++ +  Q+ ++EE+ RE+
Sbjct:   36 VAIPKATALDLSCNKLTSLPDDFCNLSYIVRLDLSKNQIAQLPSEFGRLVNLQHLDLLQNRIVALPVSFAQLKSLKWLDLKDNPLKPALAKVAGDCLDEKQCKECAQGVKYLPLVSASVYIDLLGLLADRKQRLEAQQRVKEEQDREL 183

HSP 2 Score: 29.261 bits (64), Expect = 2.658e-22
Identity = 11/22 (50.00%), Postives = 19/22 (86.36%), Query Frame = 2

Query:   44 IENDELDLSLQALNEIPIKDIV 109
            ++ +ELDLSL  L+E+P++D+V
Sbjct:   15 LDGNELDLSLSDLSEVPVRDLV 36

[Close]

BLAST of SMED30025931 vs. Ensembl Xenopus
Match: lrrc59 (leucine rich repeat containing 59 [Source:NCBI gene;Acc:407863])

HSP 1 Score: 87.8113 bits (216), Expect = 5.358e-19
Identity = 58/127 (45.67%), Postives = 86/127 (67.72%), Query Frame = 1

Query:  232 LTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXR----REEEIMRQRVLEEEKQREI 600
            L+ I +LDLSKN+I  LP E G+LVNLQ+LDL  N++ +LP +   LK LKWLDLKDNPL   L+K AGDCL+++QC +CA  VL ++    S   ++  +K +    R++ +  Q+ ++EE+ RE+
Sbjct:   85 LSYIVRLDLSKNQIAQLPSEFGRLVNLQHLDLLQNRIVALPVSFAQLKSLKWLDLKDNPLKPALAKVAGDCLDEKQCKECAQGVLQYMKSVQSDHERELQRKLQLDKDRKQRLEAQQRVKEEQDREL 211

[Close]

BLAST of SMED30025931 vs. Ensembl Xenopus
Match: lrrc28 (leucine rich repeat containing 28 [Source:NCBI gene;Acc:448029])

HSP 1 Score: 69.707 bits (169), Expect = 9.994e-13
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETM 363
            ++S+DLS N+LEI+ P+IG L S+  L L+ N+++FLP EIGKL  LQ LDL +N L SLPE +
Sbjct:   90 LQSLDLSNNALEILCPDIGRLKSLRHLRLTNNRLKFLPPEIGKLKELQTLDLSTNHLVSLPEKL 153

[Close]

BLAST of SMED30025931 vs. Ensembl Xenopus
Match: lrrc28 (leucine rich repeat containing 28 [Source:NCBI gene;Acc:448029])

HSP 1 Score: 69.707 bits (169), Expect = 1.047e-12
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETM 363
            ++S+DLS N+LEI+ P+IG L S+  L L+ N+++FLP EIGKL  LQ LDL +N L SLPE +
Sbjct:   90 LQSLDLSNNALEILCPDIGRLKSLRHLRLTNNRLKFLPPEIGKLKELQTLDLSTNHLVSLPEKL 153

[Close]

BLAST of SMED30025931 vs. Ensembl Mouse
Match: Lrrc59 (leucine rich repeat containing 59 [Source:MGI Symbol;Acc:MGI:2138133])

HSP 1 Score: 101.679 bits (252), Expect = 3.098e-24
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQRVLEEEKQRE 597
             P    +DLSCN L  +  +   LT + KLDLSKNK+Q LP + G+LVNLQ+LDL +N+L +LP +   LK LKWLDLKDNPL+  L+K AGDCL+++QC +CA  VL  +    +            ++E  RQR LE E++ E
Sbjct:   38 LPKATVLDLSCNKLSTLPSDFCGLTHLVKLDLSKNKLQQLPADFGRLVNLQHLDLLNNRLVTLPVSFAQLKNLKWLDLKDNPLDPVLAKVAGDCLDEKQCKQCANKVLQHMKAVQA------------DQERERQRRLEVEREAE 170

[Close]

BLAST of SMED30025931 vs. Ensembl Mouse
Match: Lrrc28 (leucine rich repeat containing 28 [Source:MGI Symbol;Acc:MGI:1915689])

HSP 1 Score: 64.6994 bits (156), Expect = 3.722e-11
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETM 363
            ++ +DLS N+LEI+ P IG L ++  L L+ N++QFLP E+G L  LQ LD+ SN+L +LPE +
Sbjct:   90 LQCLDLSDNALEIVCPEIGGLRALRHLRLANNQLQFLPPEVGDLKELQTLDISSNRLLALPERL 153

[Close]

BLAST of SMED30025931 vs. Ensembl Mouse
Match: Shoc2 (Shoc2, leucine rich repeat scaffold protein [Source:MGI Symbol;Acc:MGI:1927197])

HSP 1 Score: 56.9954 bits (136), Expect = 1.785e-8
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1

Query:  181 IDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
            +DLS  S+ I+ P++  LT +T+L L  NK+Q LP E+G LVNL  L L  N LTSLP+++ N
Sbjct:  105 LDLSKRSIHILPPSVKELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDSLDN 167

[Close]

Query:  181 IDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
            +DLS  S+ I+ P++  LT +T+L L  NK+Q LP E+G LVNL  L L  N LTSLP+++ N
Sbjct:  105 LDLSKRSIHILPPSVKELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDSLDN 167

[Close]

BLAST of SMED30025931 vs. Ensembl Mouse
Match: Rsu1 (Ras suppressor protein 1 [Source:MGI Symbol;Acc:MGI:103040])

HSP 1 Score: 53.9138 bits (128), Expect = 7.316e-8
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 1

Query:  169 TIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
            T++++ LS N  EI+ P+IG LT +  L L  N +  LP EIG+L  L+ L ++ N+LT LP  + N
Sbjct:  118 TLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGN 184

HSP 2 Score: 48.521 bits (114), Expect = 5.181e-6
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSL--EIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMC 366
             P ++ +DL+ N+L    +  N   LT++  L LS N  + LP +IGKL  LQ L LR N L SLP+ + 
Sbjct:   91 LPALEVLDLTYNNLNEHSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIG 160

[Close]

BLAST of SMED30025931 vs. UniProt/SwissProt
Match: sp|Q96AG4|LRC59_HUMAN (Leucine-rich repeat-containing protein 59 OS=Homo sapiens OX=9606 GN=LRRC59 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.873e-23
Identity = 68/145 (46.90%), Postives = 91/145 (62.76%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQRVLEEEKQRE 597
             P    +DLSCN L  +  +   LT + KLDLSKNK+Q LP + G+LVNLQ+LDL +NKL +LP +   LK LKWLDLKDNPL+  L+K AGDCL+++QC +CA  VL  +    +            ++E  RQR LE E++ E
Sbjct:   38 LPKATILDLSCNKLTTLPSDFCGLTHLVKLDLSKNKLQQLPADFGRLVNLQHLDLLNNKLVTLPVSFAQLKNLKWLDLKDNPLDPVLAKVAGDCLDEKQCKQCANKVLQHMKAVQA------------DQERERQRRLEVEREAE 170

HSP 2 Score: 29.6462 bits (65), Expect = 1.873e-23
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 2

Query:   44 IENDELDLSLQALNEIPIKDIV 109
            ++ +ELDLSL  LNE+P+K++ 
Sbjct:   15 LDGNELDLSLSDLNEVPVKELA 36

[Close]

BLAST of SMED30025931 vs. UniProt/SwissProt
Match: sp|Q922Q8|LRC59_MOUSE (Leucine-rich repeat-containing protein 59 OS=Mus musculus OX=10090 GN=Lrrc59 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.000e-23
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQRVLEEEKQRE 597
             P    +DLSCN L  +  +   LT + KLDLSKNK+Q LP + G+LVNLQ+LDL +N+L +LP +   LK LKWLDLKDNPL+  L+K AGDCL+++QC +CA  VL  +    +            ++E  RQR LE E++ E
Sbjct:   38 LPKATVLDLSCNKLSTLPSDFCGLTHLVKLDLSKNKLQQLPADFGRLVNLQHLDLLNNRLVTLPVSFAQLKNLKWLDLKDNPLDPVLAKVAGDCLDEKQCKQCANKVLQHMKAVQA------------DQERERQRRLEVEREAE 170

HSP 2 Score: 29.6462 bits (65), Expect = 2.000e-23
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 2

Query:   44 IENDELDLSLQALNEIPIKDIV 109
            ++ +ELDLSL  LNE+P+K++ 
Sbjct:   15 LDGNELDLSLSDLNEVPVKELA 36

[Close]

BLAST of SMED30025931 vs. UniProt/SwissProt
Match: sp|Q5RJR8|LRC59_RAT (Leucine-rich repeat-containing protein 59 OS=Rattus norvegicus OX=10116 GN=Lrrc59 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.101e-23
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQRVLEEEKQRE 597
             P    +DLSCN L  +  +   LT + KLDLSKNK+Q LP + G+LVNLQ+LDL +N+L +LP +   LK LKWLDLKDNPL+  L+K AGDCL+++QC +CA  VL  +    +            ++E  RQR LE E++ E
Sbjct:   38 LPKATVLDLSCNKLSTLPSDFCGLTHLVKLDLSKNKLQQLPADFGRLVNLQHLDLLNNRLVTLPVSFAQLKNLKWLDLKDNPLDPVLAKVAGDCLDEKQCKQCANKVLQHMKAVQA------------DQERERQRRLEVEREAE 170

HSP 2 Score: 29.6462 bits (65), Expect = 2.101e-23
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 2

Query:   44 IENDELDLSLQALNEIPIKDIV 109
            ++ +ELDLSL  LNE+P+K++ 
Sbjct:   15 LDGNELDLSLSDLNEVPVKELA 36

[Close]

BLAST of SMED30025931 vs. UniProt/SwissProt
Match: sp|Q8AVS8|LRC59_XENLA (Leucine-rich repeat-containing protein 59 OS=Xenopus laevis OX=8355 GN=lrrc59 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.733e-23
Identity = 66/147 (44.90%), Postives = 91/147 (61.90%), Query Frame = 1

Query:  157 IKFPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQRVLEEEKQRE 597
            +  P   ++DLSCN L  +  +   L+ I +LDLSKN+I  LP E G+L+NLQ+LDL  N L SLP +   LK LKWLDLKDNPL  +L+K AGDCL+++QC +CA  VL ++    S            + EI  QR L+ +K+R+
Sbjct:   36 VAIPKATALDLSCNKLTTLPDDFCNLSHIVRLDLSKNQIVQLPSEFGRLMNLQHLDLLQNHLMSLPVSFAQLKSLKWLDLKDNPLKPDLAKVAGDCLDEKQCKECAQRVLQYMKSVQS------------DHEIELQRKLQLDKERK 170

[Close]

BLAST of SMED30025931 vs. UniProt/SwissProt
Match: sp|Q6NX28|LRC59_XENTR (Leucine-rich repeat-containing protein 59 OS=Xenopus tropicalis OX=8364 GN=lrrc59 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.628e-23
Identity = 65/152 (42.76%), Postives = 98/152 (64.47%), Query Frame = 1

Query:  157 IKFPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXR----REEEIMRQRVLEEEKQREI 600
            +  P   ++DLSCN L  +  +   L+ I +LDLSKN+I  LP E G+LVNLQ+LDL  N++ +LP +   LK LKWLDLKDNPL   L+K AGDCL+++QC +CA  VL ++    S   ++  +K +    R++ +  Q+ ++EE+ RE+
Sbjct:   36 VAIPKATALDLSCNKLTSLPDDFCNLSYIVRLDLSKNQIAQLPSEFGRLVNLQHLDLLQNRIVALPVSFAQLKSLKWLDLKDNPLKPALAKVAGDCLDEKQCKECAQGVLQYMKSVQSDHERELQRKLQLDKDRKQRLEAQQRVKEEQDREL 187

HSP 2 Score: 29.261 bits (64), Expect = 4.628e-23
Identity = 11/22 (50.00%), Postives = 19/22 (86.36%), Query Frame = 2

Query:   44 IENDELDLSLQALNEIPIKDIV 109
            ++ +ELDLSL  L+E+P++D+V
Sbjct:   15 LDGNELDLSLSDLSEVPVRDLV 36

[Close]

BLAST of SMED30025931 vs. TrEMBL
Match: A0A1A8F670 (Leucine rich repeat containing 59 OS=Nothobranchius korthausae OX=1143690 GN=LRRC59 PE=4 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.420e-24
Identity = 70/145 (48.28%), Postives = 98/145 (67.59%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQRVLEEEKQRE 597
            FP   ++D+SCN++  + P    LT + KLDLSKN++  LPD++G LVNLQ+LDL +NKLT LP +   L+ LKWLDLKDNPL   L+KAAGDCL+++QC  CA+ VL  +        +  +K+  RE+E+ ++R   E KQRE
Sbjct:   36 FPKATAVDMSCNNIISLPPEFCSLTHLVKLDLSKNQLTCLPDDLGNLVNLQHLDLYNNKLTVLPVSFSQLRNLKWLDLKDNPLEPGLAKAAGDCLDEKQCKLCAIKVLQHMRAIQEDVDRAREKRLLREKELEKKR---EAKQRE 177

[Close]

BLAST of SMED30025931 vs. TrEMBL
Match: A0A3P8REF8 (Leucine rich repeat containing 59 OS=Astatotilapia calliptera OX=8154 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.122e-24
Identity = 66/136 (48.53%), Postives = 94/136 (69.12%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQR 570
            FP +  +DLSCN++  + P    LT + K+DLSKN++  LPD++G LVNLQ+LDL +NKLT+LP +   L+ LKWLDLKDNPL   L+KAAGDCL+++QC +CA  VL  +     +     +K+  RE+E+ R+R
Sbjct:   37 FPKVTVVDLSCNNITSLPPEFCNLTHLVKVDLSKNQLTGLPDDLGNLVNLQHLDLYNNKLTNLPVSFSQLRSLKWLDLKDNPLELGLAKAAGDCLDEKQCKQCATKVLQHMRAIQEEVDHAREKRLLREKELERKR 172

[Close]

BLAST of SMED30025931 vs. TrEMBL
Match: A0A3P9B7D0 (Leucine rich repeat containing 59 OS=Maylandia zebra OX=106582 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.122e-24
Identity = 66/136 (48.53%), Postives = 94/136 (69.12%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQR 570
            FP +  +DLSCN++  + P    LT + K+DLSKN++  LPD++G LVNLQ+LDL +NKLT+LP +   L+ LKWLDLKDNPL   L+KAAGDCL+++QC +CA  VL  +     +     +K+  RE+E+ R+R
Sbjct:   37 FPKVTVVDLSCNNITSLPPEFCNLTHLVKVDLSKNQLTGLPDDLGNLVNLQHLDLYNNKLTNLPVSFSQLRSLKWLDLKDNPLELGLAKAAGDCLDEKQCKQCATKVLQHMRAIQEEVDHAREKRLLREKELERKR 172

[Close]

BLAST of SMED30025931 vs. TrEMBL
Match: W5MZB8 (Leucine rich repeat containing 59 OS=Lepisosteus oculatus OX=7918 PE=4 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.725e-24
Identity = 70/145 (48.28%), Postives = 101/145 (69.66%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQRVLEEEKQRE 597
            FP   ++DLSCN+L I+  +   LT +TKLDLSKN++  LP E+G+L++LQ+LDL +NKLT LP +   LK LKWLDLKDNPL  +L+KAAGDCL+++QC +CA  VL ++       + +  + K +E  + R++  E EK+RE
Sbjct:   67 FPKATALDLSCNNLTILPSDFCGLTHLTKLDLSKNQLSQLPAELGRLISLQHLDLYNNKLTMLPVSFAQLKNLKWLDLKDNPLEPSLAKAAGDCLDEKQCKQCAGRVLQYMR------VIQEQEDKEKERRLQREKASELEKKRE 205

[Close]

BLAST of SMED30025931 vs. TrEMBL
Match: A0A3Q2WJS5 (Leucine rich repeat containing 59 OS=Haplochromis burtoni OX=8153 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.369e-24
Identity = 66/136 (48.53%), Postives = 94/136 (69.12%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQR 570
            FP +  +DLSCN++  + P    LT + K+DLSKN++  LPD++G LVNLQ+LDL +NKLT+LP +   L+ LKWLDLKDNPL   L+KAAGDCL+++QC +CA  VL  +     +     +K+  RE+E+ R+R
Sbjct:   37 FPKVTVVDLSCNNITSLPPEFCNLTHLVKVDLSKNQLTSLPDDLGNLVNLQHLDLYNNKLTNLPVSFSQLRSLKWLDLKDNPLELGLAKAAGDCLDEKQCKQCATKVLQHMRAIQEEVDHAREKRLLREKELERKR 172

[Close]

BLAST of SMED30025931 vs. Ensembl Cavefish
Match: lrrc59 (leucine rich repeat containing 59 [Source:NCBI gene;Acc:405868])

HSP 1 Score: 99.3673 bits (246), Expect = 3.719e-24
Identity = 59/110 (53.64%), Postives = 79/110 (71.82%), Query Frame = 1

Query:  166 PTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFL 495
            P    +DLSCN+L  + P    LT + K+DLSKN++  LP+EIG+L NLQ+LDL +NKL  LP +   LK LKWLDLKDNPL  +L+KAAGDCL+++QC +C+  VL  +
Sbjct:   37 PKATVLDLSCNNLTTLPPEFCTLTHLVKVDLSKNQLVSLPEEIGRLSNLQHLDLYNNKLVRLPLSFSQLKSLKWLDLKDNPLEQSLAKAAGDCLDEKQCRQCSTKVLQHM 146

HSP 2 Score: 31.5722 bits (70), Expect = 3.719e-24
Identity = 14/33 (42.42%), Postives = 24/33 (72.73%), Query Frame = 2

Query:   20 SKIQIQKL---IENDELDLSLQALNEIPIKDIV 109
            SK++++ L   +E +ELDLSL  L E+P+K++ 
Sbjct:    2 SKVKVENLREKVEGNELDLSLSNLTEVPVKELA 34

[Close]

BLAST of SMED30025931 vs. Ensembl Cavefish
Match: pidd1 (p53-induced death domain-containing protein 1 [Source:NCBI gene;Acc:103029535])

HSP 1 Score: 59.3066 bits (142), Expect = 2.858e-9
Identity = 28/65 (43.08%), Postives = 45/65 (69.23%), Query Frame = 1

Query:  169 TIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETM 363
            +++ ++L  N LE + P +GLL  + +LD+S N++  LP+E+G L NL  L+L +NKL  LPET+
Sbjct:  308 SLQRLNLLGNRLEALPPGVGLLLELQELDVSFNQLDGLPEELGLLHNLHTLELSNNKLQKLPETL 372

HSP 2 Score: 51.6026 bits (122), Expect = 9.219e-7
Identity = 24/62 (38.71%), Postives = 43/62 (69.35%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPE 357
            ++ +D+S N L+ +   +GLL ++  L+LS NK+Q LP+ +G L +L+ L + SN+L ++PE
Sbjct:  332 LQELDVSFNQLDGLPEELGLLHNLHTLELSNNKLQKLPETLGSLHSLRVLSIHSNELRNIPE 393

[Close]

BLAST of SMED30025931 vs. Ensembl Cavefish
Match: lrrc7 (leucine rich repeat containing 7 [Source:ZFIN;Acc:ZDB-GENE-130530-876])

HSP 1 Score: 52.7582 bits (125), Expect = 3.538e-7
Identity = 30/88 (34.09%), Postives = 43/88 (48.86%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTS-----------------------ITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMC 366
            ++  D SCN LE + P IG L S                       +T + L  NK++FLPDEIG++  L+ L+L  N+L +LP T  
Sbjct:  269 LEEFDCSCNELESLPPTIGYLHSLRTFAADENFLTELPREIGNCRNVTVMSLRSNKLEFLPDEIGQMTKLRVLNLSDNRLRNLPYTFT 356

[Close]

BLAST of SMED30025931 vs. Ensembl Cavefish
Match: rsu1 (Ras suppressor protein 1 [Source:NCBI gene;Acc:103044941])

HSP 1 Score: 51.6026 bits (122), Expect = 4.215e-7
Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 1

Query:  169 TIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
            T++++ LS N  EI+ P+IG L  +  L L  N +  LP EIG L  L+ L ++ N+LT LP  + N
Sbjct:  135 TLRALYLSDNDFEILPPDIGKLAKLQILSLRDNDLISLPKEIGDLAQLKELHIQGNRLTVLPPELGN 201

HSP 2 Score: 48.1358 bits (113), Expect = 5.114e-6
Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSL--EIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
             P ++ +DL+ N+L    +  N   LT++  L LS N  + LP +IGKL  LQ L LR N L SLP+ + +
Sbjct:  108 LPALEVLDLTYNNLNESSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLAKLQILSLRDNDLISLPKEIGD 178

[Close]

BLAST of SMED30025931 vs. Ensembl Cavefish
Match: rsu1 (Ras suppressor protein 1 [Source:NCBI gene;Acc:103044941])

HSP 1 Score: 51.2174 bits (121), Expect = 4.951e-7
Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 1

Query:  169 TIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
            T++++ LS N  EI+ P+IG L  +  L L  N +  LP EIG L  L+ L ++ N+LT LP  + N
Sbjct:  136 TLRALYLSDNDFEILPPDIGKLAKLQILSLRDNDLISLPKEIGDLAQLKELHIQGNRLTVLPPELGN 202

HSP 2 Score: 47.7506 bits (112), Expect = 6.276e-6
Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSL--EIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
             P ++ +DL+ N+L    +  N   LT++  L LS N  + LP +IGKL  LQ L LR N L SLP+ + +
Sbjct:  109 LPALEVLDLTYNNLNESSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLAKLQILSLRDNDLISLPKEIGD 179

[Close]

BLAST of SMED30025931 vs. Ensembl Sea Lamprey
Match: LRRC59 (leucine rich repeat containing 59 [Source:HGNC Symbol;Acc:HGNC:28817])

HSP 1 Score: 100.138 bits (248), Expect = 2.197e-24
Identity = 81/210 (38.57%), Postives = 121/210 (57.62%), Query Frame = 1

Query:  160 KFPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXX--------XXRREEEIMRQRVLEEEKQREIXXXXXXXXXXXXXXXIDERKTQLLESRSSNENMSSFIQNNSSFSDETNVNSITGK 765
            + P    +DLSCN L  + P    LT + KLDLSKN+++ LP E G+LV L +LDL  NKL SLP +   LK LKWLDLKDNPL   L+K   DCL+++QC  CA+ V++++ Q  +++ K   +        + R+E E++RQ    EE +RE++K +KA  + KR+ E +E + QL   R  NE  +              V+++ G+
Sbjct:   39 ELPKATVLDLSCNLLTSLQPEFSRLTHLVKLDLSKNQLRELPAEFGELVWLHHLDLFQNKLQSLPTSFAQLKSLKWLDLKDNPLEPALAKVTTDCLDEKQCKLCAVQVVEYMKQMQAEEEKAQQQRLEKERSKQARKEAELLRQ----EEAKRELRKQQKAMEKEKRRREYEEAQAQL---RQRNETPAPKPSTAPHGCACVPVDAVVGE 241

[Close]

BLAST of SMED30025931 vs. Ensembl Sea Lamprey
Match: lrrc18a (leucine rich repeat containing 18a [Source:ZFIN;Acc:ZDB-GENE-090313-323])

HSP 1 Score: 51.9878 bits (123), Expect = 5.365e-8
Identity = 23/44 (52.27%), Postives = 34/44 (77.27%), Query Frame = 1

Query:  232 LTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETM 363
            L+ + +LDLS+N ++ LP  IGK VNL+ LD+ SN+L SLPE++
Sbjct:   49 LSDVDELDLSRNALRVLPPSIGKFVNLRSLDVHSNRLESLPESL 92

HSP 2 Score: 47.7506 bits (112), Expect = 1.313e-6
Identity = 23/72 (31.94%), Postives = 45/72 (62.50%), Query Frame = 1

Query:  157 IKFPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTS--LPETMC 366
            +K   +  +DLS N+L ++ P+IG   ++  LD+  N+++ LP+ +G+L  L +L+  +N+L +  LPE + 
Sbjct:   47 LKLSDVDELDLSRNALRVLPPSIGKFVNLRSLDVHSNRLESLPESLGQLSGLLHLNACNNRLATHGLPEGLA 118

[Close]

BLAST of SMED30025931 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004940.1 (pep scaffold:Pmarinus_7.0:GL476356:339323:347865:-1 gene:ENSPMAG00000004448.1 transcript:ENSPMAT00000004940.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.8322 bits (120), Expect = 2.562e-7
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 1

Query:  181 IDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETM 363
            +DL+  S+  + PNI  LT +T+L L  N++  LP EIG LVNL  L L  N LT LP+T+
Sbjct:   54 LDLAKRSIASLPPNIKELTQLTELYLYGNRLPCLPTEIGCLVNLVTLALNENSLTGLPDTL 114

HSP 2 Score: 50.0618 bits (118), Expect = 4.026e-7
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 1

Query:  169 TIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
            ++ ++D++ N LE +   IG    +T LDL  N++  LPD IG L +L  L LR N+L+++P T+ N
Sbjct:  188 SLLTLDVAHNQLEHLPEEIGNCVQVTNLDLQHNELLDLPDSIGNLASLNRLGLRYNRLSAVPTTLAN 254

[Close]

BLAST of SMED30025931 vs. Ensembl Sea Lamprey
Match: scrib (scribble planar cell polarity protein [Source:NCBI gene;Acc:368473])

HSP 1 Score: 50.447 bits (119), Expect = 3.431e-7
Identity = 37/96 (38.54%), Postives = 50/96 (52.08%), Query Frame = 1

Query:  163 FPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLN 450
             P ++ + L  N LE +   IG L  +  LD+S+N+++ LPD IG L  L       N L  LPE +  LK L  L    N L T+L +A GDC N
Sbjct:  143 LPNVRELWLDGNQLEALPSEIGELRRLVCLDISQNRLERLPDAIGGLAALTDFLASQNHLEELPEELGKLKHLSILKADQNRL-THLPEAIGDCEN 237

[Close]

BLAST of SMED30025931 vs. Ensembl Sea Lamprey
Match: lrrc40 (leucine rich repeat containing 40 [Source:NCBI gene;Acc:334130])

HSP 1 Score: 47.7506 bits (112), Expect = 2.623e-6
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1

Query:  187 LSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETM 363
            L+ N L  ++ ++ LL ++T LD+  N++  LP  +G+LVNLQ L++  NKL +LPE++
Sbjct:   91 LASNRLRALSDDLQLLPALTVLDVHDNQLTELPQVLGELVNLQKLNVSHNKLQTLPESL 149

[Close]

BLAST of SMED30025931 vs. Ensembl Nematostella
Match: EDO38539 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SCL9])

HSP 1 Score: 51.6026 bits (122), Expect = 2.680e-8
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1

Query:  169 TIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLP 354
            T++S++LS N    + P +G L ++ +L L  N I+ LPDE+G LVNL+ L L  NKL  +P
Sbjct:   23 TLQSLELSYNGFIELPPALGELVNLQELYLQHNSIELLPDELGNLVNLKRLGLAHNKLNDVP 84

[Close]

BLAST of SMED30025931 vs. Ensembl Nematostella
Match: EDO38205 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SDM2])

HSP 1 Score: 50.8322 bits (120), Expect = 2.766e-8
Identity = 27/65 (41.54%), Postives = 45/65 (69.23%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMC 366
            +KS+ L+  +L  I   +  L S+ KLDL+ N++  +P+ I +LV+L+ LDL +NKLTS+PE++ 
Sbjct:    1 LKSLSLTKGNLTSIPEEVFRLVSLEKLDLNNNELTSIPESIAQLVSLEKLDLNNNKLTSIPESIA 65

[Close]

BLAST of SMED30025931 vs. Ensembl Nematostella
Match: EDO37499 (Leucine-rich repeat protein soc-2 homolog [Source:UniProtKB/Swiss-Prot;Acc:A7SFP1])

HSP 1 Score: 52.7582 bits (125), Expect = 1.169e-7
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1

Query:  178 SIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
            ++D+S N +E +   IG    +T LDL  N I  LPD IG+L  +  L LR N+L+SLP+++ N
Sbjct:  228 TLDISHNHIENLPAEIGNCVHMTSLDLQHNDIPSLPDSIGRLTAMTRLGLRYNQLSSLPDSLAN 291

HSP 2 Score: 49.6766 bits (117), Expect = 9.799e-7
Identity = 23/65 (35.38%), Postives = 41/65 (63.08%), Query Frame = 1

Query:  169 TIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETM 363
            +++ + L  N + ++ P +GLL ++  L LS+N +  LPD + KL  L+ LDLR NK+  +P+ +
Sbjct:  110 SLRELYLYGNRIAVLPPEVGLLPNLETLALSENNLTTLPDNLVKLTKLKVLDLRHNKIKEIPDVI 174

[Close]

BLAST of SMED30025931 vs. Ensembl Nematostella
Match: EDO33432 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SS78])

HSP 1 Score: 50.0618 bits (118), Expect = 8.880e-7
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMC 366
            ++ +DL CN LE +   +G L S+ +  L  N ++ LP EIG L  LQ  D+  NK+  LP+ +C
Sbjct:  123 LERLDLGCNELEELPDVVGSLPSLAEFWLDGNLLKTLPTEIGNLKKLQIFDVSENKIEYLPDEIC 187

[Close]

BLAST of SMED30025931 vs. Ensembl Nematostella
Match: EDO38039 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SE32])

HSP 1 Score: 48.9062 bits (115), Expect = 1.502e-6
Identity = 20/46 (43.48%), Postives = 34/46 (73.91%), Query Frame = 1

Query:  232 LTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
            + ++TKL L +N++  LPD+ G LVNL++LD+  N++  LP++ CN
Sbjct:  292 MANLTKLHLDENQVVCLPDDFGDLVNLEWLDVGQNRIEMLPDSFCN 337

[Close]

BLAST of SMED30025931 vs. Ensembl Medaka
Match: lrrc59 (leucine rich repeat containing 59 [Source:NCBI gene;Acc:101160781])

HSP 1 Score: 99.3673 bits (246), Expect = 1.706e-23
Identity = 60/114 (52.63%), Postives = 80/114 (70.18%), Query Frame = 1

Query:  160 KFPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQ 501
            + P    +DLSCN++  ++P    LT + KLDLSKN++  LPDE G LVNLQ+LDL +NKL +LP +   L+ LKWLDLKDNPL   L+KAAGDCL+++QC  CA  VL  + +
Sbjct:   36 QLPKATVMDLSCNNIICLSPEFCSLTHLVKLDLSKNQLTCLPDEFGNLVNLQHLDLFNNKLMTLPVSFSQLRSLKWLDLKDNPLEPTLAKAAGDCLDEKQCKLCASKVLQHMRE 149

[Close]

BLAST of SMED30025931 vs. Ensembl Medaka
Match: lrrc28 (leucine rich repeat containing 28 [Source:NCBI gene;Acc:101170504])

HSP 1 Score: 51.9878 bits (123), Expect = 4.313e-7
Identity = 28/64 (43.75%), Postives = 46/64 (71.88%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETM 363
            ++S+DLS N+L+++ P+IG L ++  L LS N++ +LP EIG L  L+ LD+  N+L SLP+ +
Sbjct:   90 LQSLDLSDNALQLLCPDIGRLRALRHLRLSNNRLNYLPPEIGDLQELETLDVAMNQLMSLPDRL 153

[Close]

BLAST of SMED30025931 vs. Ensembl Medaka
Match: lrrc7 (leucine rich repeat containing 7 [Source:NCBI gene;Acc:101170832])

HSP 1 Score: 52.373 bits (124), Expect = 4.806e-7
Identity = 30/88 (34.09%), Postives = 43/88 (48.86%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTS-----------------------ITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMC 366
            ++  D SCN LE + P IG L S                       +T + L  NK++FLPDEIG++  L+ L+L  N+L +LP T  
Sbjct:  314 LEEFDCSCNELESLPPTIGYLHSLRTFAADENFLTELPREIGNCRNVTVMSLRSNKLEFLPDEIGQMTKLRVLNLSDNRLKNLPFTFT 401

[Close]

BLAST of SMED30025931 vs. Ensembl Medaka
Match: lrrc7 (leucine rich repeat containing 7 [Source:NCBI gene;Acc:101170832])

HSP 1 Score: 52.373 bits (124), Expect = 5.162e-7
Identity = 30/88 (34.09%), Postives = 43/88 (48.86%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTS-----------------------ITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMC 366
            ++  D SCN LE + P IG L S                       +T + L  NK++FLPDEIG++  L+ L+L  N+L +LP T  
Sbjct:  320 LEEFDCSCNELESLPPTIGYLHSLRTFAADENFLTELPREIGNCRNVTVMSLRSNKLEFLPDEIGQMTKLRVLNLSDNRLKNLPFTFT 407

[Close]

BLAST of SMED30025931 vs. Ensembl Medaka
Match: lrrc7 (leucine rich repeat containing 7 [Source:NCBI gene;Acc:101170832])

HSP 1 Score: 52.373 bits (124), Expect = 5.172e-7
Identity = 30/88 (34.09%), Postives = 43/88 (48.86%), Query Frame = 1

Query:  172 IKSIDLSCNSLEIITPNIGLLTS-----------------------ITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMC 366
            ++  D SCN LE + P IG L S                       +T + L  NK++FLPDEIG++  L+ L+L  N+L +LP T  
Sbjct:  320 LEEFDCSCNELESLPPTIGYLHSLRTFAADENFLTELPREIGNCRNVTVMSLRSNKLEFLPDEIGQMTKLRVLNLSDNRLKNLPFTFT 407

[Close]

BLAST of SMED30025931 vs. Planmine SMEST
Match: SMESG000066313.1 (SMESG000066313.1)

HSP 1 Score: 399.438 bits (1025), Expect = 3.672e-140
Identity = 271/273 (99.27%), Postives = 273/273 (100.00%), Query Frame = 1

Query:  157 IKFPTIKSIDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSXXXXXXXXXXRREEEIMRQRVLEEEKQREIXXXXXXXXXXXXXXXIDERKTQLLESRSSNENMSSFIQNNSSFSDETNVNSITGKLLSXXXXXXXXXXXXXXXXXXXXXXXXXXNRNPHKFSSGTVQWCQKANQNIPTSLIYFRNLLWQYANEAF 975
            IKFPTIKSIDLSCN+LEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNLKKLKWLDLKDNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSKKLKKTDKKKRREEEIMRQRVLEEEKQREIKKLEKAELRLKRKAEI+ERKTQLLESRSSNENMSSFIQNNSSFSDETNVNSITGKLLSFFRHIIAFFFGFLCLVIVVLILLGFCNRNPHKFSSGTVQWCQKANQNIPTSLIYFRNLLWQYANEAF
Sbjct:   32 IKFPTIKSIDLSCNALEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNLKKLKWLDLKDNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMSKKLKKTDKKKRREEEIMRQRVLEEEKQREIKKLEKAELRLKRKAEIEERKTQLLESRSSNENMSSFIQNNSSFSDETNVNSITGKLLSFFRHIIAFFFGFLCLVIVVLILLGFCNRNPHKFSSGTVQWCQKANQNIPTSLIYFRNLLWQYANEAF 304

HSP 2 Score: 64.6994 bits (156), Expect = 1.368e-11
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 2

Query:   14 MCSKIQIQKLIENDELDLSLQALNEIPIKDIVYY 115
            MCSKIQIQKLIENDELDLSLQALNEIPIKDI+ +
Sbjct:    1 MCSKIQIQKLIENDELDLSLQALNEIPIKDIIKF 34

[Close]

BLAST of SMED30025931 vs. Planmine SMEST
Match: SMESG000004186.1 (SMESG000004186.1)

HSP 1 Score: 51.2174 bits (121), Expect = 7.900e-7
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 1

Query:  181 IDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCNXXXXXXXXXXXNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMS 510
            +DLS N ++ ++ +I  L+++  LDL  N ++ +PDEI  L  L+YL+L  NK+T LPE++  L  L+ +      L  NL K     L  E C   +L VLD  N   S
Sbjct:  101 LDLSSNHIKKVSEDIRFLSNLLYLDLQNNNLKTIPDEICDLAQLRYLNLSKNKITVLPESIGTLNHLQQII-----LGNNLLK----LLPTEFCRLLSLEVLDLSNNEFS 201

[Close]

BLAST of SMED30025931 vs. Planmine SMEST
Match: SMESG000072843.1 (SMESG000072843.1)

HSP 1 Score: 49.2914 bits (116), Expect = 3.054e-6
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 1

Query:  220 NIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMC 366
            NI  LT+++ L++ +N I+ LP  +G LV+LQYLD+  N L  LPE++C
Sbjct:  150 NINRLTNLSHLEIRENDIKSLPQNMGFLVSLQYLDVGHNDLKELPESLC 198

[Close]

BLAST of SMED30025931 vs. Planmine SMEST
Match: SMESG000029655.1 (SMESG000029655.1)

HSP 1 Score: 48.1358 bits (113), Expect = 6.974e-6
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1

Query:  181 IDLSCNSLEIITPN-IGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
            ++L  N +  + PN +   T++ +LDLS N++  +P EIG LVNLQ L L SN +  LP T+ N
Sbjct:  390 LNLRGNEICTLIPNDVVTWTTLVELDLSSNQLSIIPPEIGALVNLQKLHLSSNHIKKLPPTIGN 453

[Close]

BLAST of SMED30025931 vs. Planmine SMEST
Match: SMESG000063073.1 (SMESG000063073.1)

HSP 1 Score: 48.1358 bits (113), Expect = 7.140e-6
Identity = 24/61 (39.34%), Postives = 37/61 (60.66%), Query Frame = 1

Query:  187 LSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMCN 369
            L+ NS+  I+ +I LL  ++ LD+S N I  LPD I  L  L+Y ++  NK+  LP+ + N
Sbjct:   97 LTANSISFISKDISLLDKLSHLDISDNNISSLPDSITNLTQLKYFNINKNKIQKLPDQIEN 157

HSP 2 Score: 47.7506 bits (112), Expect = 8.822e-6
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1

Query:  181 IDLSCNSLEIITPNIGLLTSITKLDLSKNKIQFLPDEIGKLVNLQYLDLRSNKLTSLPETMC 366
            +DLS N +    P I  L  +TKLDLS N+I  +P  + +L NLQ LDL  NKL +  E  C
Sbjct:  187 MDLSHNEISEFPPQINELYLLTKLDLSYNQITSMPFTLERLHNLQILDLSQNKLLTFSEGFC 248

The following BLAST results are available for this feature:

BLAST of SMED30025931 vs. Ensembl Human
BLAST of SMED30025931 vs. Ensembl Celegans
BLAST of SMED30025931 vs. Ensembl Fly
BLAST of SMED30025931 vs. Ensembl Zebrafish
BLAST of SMED30025931 vs. Ensembl Xenopus
BLAST of SMED30025931 vs. Ensembl Mouse
BLAST of SMED30025931 vs. UniProt/SwissProt
BLAST of SMED30025931 vs. TrEMBL
BLAST of SMED30025931 vs. Ensembl Cavefish
BLAST of SMED30025931 vs. Ensembl Sea Lamprey
BLAST of SMED30025931 vs. Ensembl Yeast
BLAST of SMED30025931 vs. Ensembl Nematostella
BLAST of SMED30025931 vs. Ensembl Medaka
BLAST of SMED30025931 vs. Planmine SMEST

BLAST of SMED30025931 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
LRRC59	4.080e-24	46.90	leucine rich repeat containing 59 [Source:HGNC Sym...	[more]
LRRC28	7.093e-9	47.76	leucine rich repeat containing 28 [Source:HGNC Sym...	[more]
LRRC28	2.734e-8	47.76	leucine rich repeat containing 28 [Source:HGNC Sym...	[more]
LRRC28	2.803e-8	47.76	leucine rich repeat containing 28 [Source:HGNC Sym...	[more]
LRRC28	3.413e-8	46.88	leucine rich repeat containing 28 [Source:HGNC Sym...	[more]

BLAST of SMED30025931 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
F56A8.3	3.438e-14	31.76	pep chromosome:WBcel235:III:13256880:13262883:1 ge...	[more]
F56A8.3	3.438e-14	31.76	pep chromosome:WBcel235:III:13256880:13262883:1 ge...	[more]
soc-2	7.553e-7	47.62	Leucine-rich repeat protein soc-2 [Source:UniProt...	[more]
soc-2	8.815e-7	47.62	Leucine-rich repeat protein soc-2 [Source:UniProt...	[more]
soc-2	8.815e-7	47.62	Leucine-rich repeat protein soc-2 [Source:UniProt...	[more]

BLAST of SMED30025931 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
CG3408	9.850e-14	34.72	gene:FBgn0036008 transcript:FBtr0076426	[more]
CG3408	2.218e-12	34.72	gene:FBgn0036008 transcript:FBtr0333863	[more]
scrib	2.351e-8	41.18	gene:FBgn0263289 transcript:FBtr0308627	[more]
scrib	2.670e-8	41.18	gene:FBgn0263289 transcript:FBtr0308626	[more]
scrib	2.707e-8	41.18	gene:FBgn0263289 transcript:FBtr0308633	[more]

BLAST of SMED30025931 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lrrc59	9.622e-24	55.86	leucine rich repeat containing 59 [Source:NCBI gen...	[more]
lrrc59	9.622e-24	55.86	leucine rich repeat containing 59 [Source:NCBI gen...	[more]
BX088692.1	2.774e-9	46.88	leucine rich repeat containing 28 [Source:NCBI gen...	[more]
lrrc28	3.335e-9	46.88	leucine rich repeat containing 28 [Source:ZFIN;Acc...	[more]
lrrc7	6.404e-7	34.09	leucine rich repeat containing 7 [Source:ZFIN;Acc:...	[more]

BLAST of SMED30025931 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lrrc59	7.719e-24	42.76	leucine rich repeat containing 59 [Source:NCBI gen...	[more]
lrrc59	2.658e-22	42.57	leucine rich repeat containing 59 [Source:NCBI gen...	[more]
lrrc59	5.358e-19	45.67	leucine rich repeat containing 59 [Source:NCBI gen...	[more]
lrrc28	9.994e-13	54.69	leucine rich repeat containing 28 [Source:NCBI gen...	[more]
lrrc28	1.047e-12	54.69	leucine rich repeat containing 28 [Source:NCBI gen...	[more]

BLAST of SMED30025931 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Lrrc59	3.098e-24	46.21	leucine rich repeat containing 59 [Source:MGI Symb...	[more]
Lrrc28	3.722e-11	48.44	leucine rich repeat containing 28 [Source:MGI Symb...	[more]
Shoc2	1.785e-8	49.21	Shoc2, leucine rich repeat scaffold protein [Sourc...	[more]
Shoc2	1.785e-8	49.21	Shoc2, leucine rich repeat scaffold protein [Sourc...	[more]
Rsu1	7.316e-8	41.79	Ras suppressor protein 1 [Source:MGI Symbol;Acc:MG...	[more]

BLAST of SMED30025931 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q96AG4\|LRC59_HUMAN	1.873e-23	46.90	Leucine-rich repeat-containing protein 59 OS=Homo ...	[more]
sp\|Q922Q8\|LRC59_MOUSE	2.000e-23	46.21	Leucine-rich repeat-containing protein 59 OS=Mus m...	[more]
sp\|Q5RJR8\|LRC59_RAT	2.101e-23	46.21	Leucine-rich repeat-containing protein 59 OS=Rattu...	[more]
sp\|Q8AVS8\|LRC59_XENLA	3.733e-23	44.90	Leucine-rich repeat-containing protein 59 OS=Xenop...	[more]
sp\|Q6NX28\|LRC59_XENTR	4.628e-23	42.76	Leucine-rich repeat-containing protein 59 OS=Xenop...	[more]

BLAST of SMED30025931 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A1A8F670	3.420e-24	48.28	Leucine rich repeat containing 59 OS=Nothobranchiu...	[more]
A0A3P8REF8	8.122e-24	48.53	Leucine rich repeat containing 59 OS=Astatotilapia...	[more]
A0A3P9B7D0	8.122e-24	48.53	Leucine rich repeat containing 59 OS=Maylandia zeb...	[more]
W5MZB8	8.725e-24	48.28	Leucine rich repeat containing 59 OS=Lepisosteus o...	[more]
A0A3Q2WJS5	9.369e-24	48.53	Leucine rich repeat containing 59 OS=Haplochromis ...	[more]

BLAST of SMED30025931 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lrrc59	3.719e-24	53.64	leucine rich repeat containing 59 [Source:NCBI gen...	[more]
pidd1	2.858e-9	43.08	p53-induced death domain-containing protein 1 [Sou...	[more]
lrrc7	3.538e-7	34.09	leucine rich repeat containing 7 [Source:ZFIN;Acc:...	[more]
rsu1	4.215e-7	40.30	Ras suppressor protein 1 [Source:NCBI gene;Acc:103...	[more]
rsu1	4.951e-7	40.30	Ras suppressor protein 1 [Source:NCBI gene;Acc:103...	[more]

BLAST of SMED30025931 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
LRRC59	2.197e-24	38.57	leucine rich repeat containing 59 [Source:HGNC Sym...	[more]
lrrc18a	5.365e-8	52.27	leucine rich repeat containing 18a [Source:ZFIN;Ac...	[more]
ENSPMAT00000004940.1	2.562e-7	47.54	pep scaffold:Pmarinus_7.0:GL476356:339323:347865:-...	[more]
scrib	3.431e-7	38.54	scribble planar cell polarity protein [Source:NCBI...	[more]
lrrc40	2.623e-6	40.68	leucine rich repeat containing 40 [Source:NCBI gen...	[more]

BLAST of SMED30025931 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30025931 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO38539	2.680e-8	43.55	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38205	2.766e-8	41.54	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO37499	1.169e-7	42.19	Leucine-rich repeat protein soc-2 homolog [Source...	[more]
EDO33432	8.880e-7	38.46	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38039	1.502e-6	43.48	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30025931 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lrrc59	1.706e-23	52.63	leucine rich repeat containing 59 [Source:NCBI gen...	[more]
lrrc28	4.313e-7	43.75	leucine rich repeat containing 28 [Source:NCBI gen...	[more]
lrrc7	4.806e-7	34.09	leucine rich repeat containing 7 [Source:NCBI gene...	[more]
lrrc7	5.162e-7	34.09	leucine rich repeat containing 7 [Source:NCBI gene...	[more]
lrrc7	5.172e-7	34.09	leucine rich repeat containing 7 [Source:NCBI gene...	[more]

BLAST of SMED30025931 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000066313.1	3.672e-140	99.27	SMESG000066313.1	[more]
SMESG000004186.1	7.900e-7	36.36	SMESG000004186.1	[more]
SMESG000072843.1	3.054e-6	46.94	SMESG000072843.1	[more]
SMESG000029655.1	6.974e-6	42.19	SMESG000029655.1	[more]
SMESG000063073.1	7.140e-6	39.34	SMESG000063073.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30025931 ID=SMED30025931|Name=SMED30025931|organism=Schmidtea mediterranea sexual|type=transcript|length=1020bp
CGTAATAATTTTAATGTGTTCGAAAATCCAAATTCAAAAATTAATTGAAA
ATGACGAATTGGATTTGAGTTTGCAGGCATTGAATGAAATACCTATTAAA
GATATCGTTTATTACTTTTCATTTAATGAAATATATAGCTTAATTATTTT
ATCTAGATCAAATTTCCAACAATCAAGTCAATAGATTTATCTTGTAACTC
ATTAGAAATTATTACTCCTAACATAGGATTACTTACATCTATAACAAAAC
TTGATTTAAGTAAAAATAAAATTCAATTTTTACCGGATGAAATTGGCAAA
CTGGTAAACTTACAATACCTTGATCTCCGATCGAATAAACTAACAAGTTT
GCCAGAAACAATGTGCAACTTAAAGAAACTGAAATGGCTCGATTTGAAAG
ACAATCCATTGAATACAAATTTAAGTAAAGCGGCTGGAGATTGTTTAAAT
AAAGAACAGTGCGGAAAATGTGCCCTCAATGTATTAGACTTTTTAAATCA
AGCAATGTCGAAAAAACTGAAAAAAACAGATAAAAAGAAACGAAGAGAAG
AAGAAATAATGCGACAGAGAGTACTTGAAGAAGAAAAACAAAGAGAGATA
AAAAAGCTAGAGAAAGCAGAGCTTCGTCTTAAAAGAAAAGCGGAAATTGA
TGAACGAAAAACGCAGTTACTTGAAAGCCGTTCATCAAACGAAAACATGT
CATCATTTATCCAAAATAATTCAAGTTTTTCGGATGAAACAAATGTAAAT
TCAATAACTGGGAAATTATTGTCATTTTTTCGTCATATCATTGCGTTTTT
CTTTGGTTTTCTTTGTTTAGTAATTGTTGTATTAATATTGCTTGGTTTTT
GTAATCGCAATCCACACAAGTTCTCTTCTGGTACAGTTCAATGGTGTCAA
AAAGCAAATCAAAATATACCAACCTCACTGATTTATTTTCGAAATTTATT
GTGGCAGTACGCAAATGAAGCTTTTTGATGGTGATGAGATTTTGTTGTGA
TTTAATATATAGATTTTGGA

protein sequence of SMED30025931-orf-1

>SMED30025931-orf-1 ID=SMED30025931-orf-1|Name=SMED30025931-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=206bp
MCNLKKLKWLDLKDNPLNTNLSKAAGDCLNKEQCGKCALNVLDFLNQAMS
KKLKKTDKKKRREEEIMRQRVLEEEKQREIKKLEKAELRLKRKAEIDERK
TQLLESRSSNENMSSFIQNNSSFSDETNVNSITGKLLSFFRHIIAFFFGF
LCLVIVVLILLGFCNRNPHKFSSGTVQWCQKANQNIPTSLIYFRNLLWQY
ANEAF*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000028	Category 2 cell
PLANA:0000099	neuron
PLANA:0002032	epidermal cell
PLANA:0002075	pigment cell
PLANA:0007528	glial cell

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR001611	Leu-rich_rpt
IPR032675	LRR_dom_sf

Vocabulary: **molecular function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **cellular component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 66..100
None	No IPR available	PANTHER	PTHR45752	FAMILY NOT NAMED	coord: 3..159
None	No IPR available	PANTHER	PTHR45752:SF4	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 59	coord: 3..159
None	No IPR available	TMHMM	TMhelix		coord: 142..164

Main menu

SMED30025931

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 9

Owlery

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