SMED30025874
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30025874 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Alignments
SMED30025874 aligns in the following genomic locations:
Homology
BLAST of SMED30025874 vs. Ensembl Human
Match: OSTM1 (osteoclastogenesis associated transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:21652]) HSP 1 Score: 75.8702 bits (185), Expect = 1.493e-14 Identity = 59/244 (24.18%), Postives = 106/244 (43.44%), Query Frame = 3 Query: 225 ELANISAQTTLCFLEFSQPLRICSNC----RNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQ--VFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDN--SQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQR 932 + AN SA+ T C + ++P+R+C C + +DN +A N + +C LL +D + F+ W + NC +C +S E S F+ L N ++C + + NA + + C+ C Y ++S Y+ MQ+ ++ +C D+ D MN TR LWS+ F C S + ++ +FI + + ++FY + + K R + +R Sbjct: 90 DFANSSAELTGCLVRSARPVRLCQTCYPLFQQVVSKMDNISRAAGNT---SESQSCARSLLMADRMQIVVILSEFFNTTWQEANCANCLTNNSEELSNSTVYFLNLFNHTLTCFEHNLQGNAHSLLQTKNYSEV----------CKNCREAYKTLSSLYSEMQKMNELENKAEPGTHLCIDVEDAMNITRKLWSRTFNCSVPCSDTVPVIAVSVFI-LFLPVVFYLSSFLHSEQKKRKLILPKR 319
BLAST of SMED30025874 vs. Ensembl Human
Match: OSTM1 (osteoclastogenesis associated transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:21652]) HSP 1 Score: 59.3066 bits (142), Expect = 6.107e-10 Identity = 41/169 (24.26%), Postives = 74/169 (43.79%), Query Frame = 3 Query: 438 FDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQ--VFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDN--SQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQR 932 F+ W + NC +C +S E S F+ L N ++C + + NA + + C+ C Y ++S Y+ MQ+ ++ +C D+ D MN TR LWS+ F C S + ++ +FI + + ++FY + + K R + +R Sbjct: 15 FNTTWQEANCANCLTNNSEELSNSTVYFLNLFNHTLTCFEHNLQGNAHSLLQTKNYSEV----------CKNCREAYKTLSSLYSEMQKMNELENKAEPGTHLCIDVEDAMNITRKLWSRTFNCSVPCSDTVPVIAVSVFI-LFLPVVFYLSSFLHSEQKKRKLILPKR 172
BLAST of SMED30025874 vs. Ensembl Fly
Match: CG14969 (gene:FBgn0035440 transcript:FBtr0073082) HSP 1 Score: 63.1586 bits (152), Expect = 8.594e-11 Identity = 64/253 (25.30%), Postives = 107/253 (42.29%), Query Frame = 3 Query: 195 KITNCSMYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYT-RFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLI-FSLPLFIVIVVTLL-FYCLASTYFHDKMRVVFYKQRRLKY 944 K +C +L + ++ C S P+ +C C + + + N + L+ N NC L SD + + + + W NCE+C++ + F + Y+ +L+N CL+ +AS + C C +Y ++N FY M++KV GS VC D+ D MN TR WSK KC +V L F + + +V+++ + FY A VV K+R + Sbjct: 25 KKHSCEKLLADLGDAQSKFIYCATTKSVPVNLCEGCVDLYRNLTNDYGNLI------ANANCSKRYLNSDRINIVATTQGILTSLWQKANCENCFRDN---FWIVYSDNSTKLQN----CLE---SASSDL-----------------VCFKCKNDYVSLNDFYLSMEKKVGGS--------VCFDLQDNMNRTRLNWSKTLKCCQREVKLTNFLIAVGVVVLLPIFTFYITA---------VVVTKRREANH 227
BLAST of SMED30025874 vs. Ensembl Zebrafish
Match: ostm1 (osteoclastogenesis associated transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-081104-270]) HSP 1 Score: 71.2478 bits (173), Expect = 2.767e-13 Identity = 57/245 (23.27%), Postives = 102/245 (41.63%), Query Frame = 3 Query: 258 CFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKC-----DNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDNGNSTIL 977 C + +++P+++C NC K + + + + + GNV+C L +SD + + + WT C+ C + + D F+ N ++SC + + + N S C+ C Y +N Y M++ T +C DI D MN TR LWSK F C + V + S LF+ I+ L S++ H + K+R+L + +S+++ Sbjct: 102 CLVFYARPVKVCQNCYTGFKGLKEIYLNISSGQ-GPGNVSCHDSLTRSDRLMLLYTLYSNLEDIWTSAKCDQCLTEHEEALTNDTRYFMATLNQSLSCFEQYKD---NHSE---------------LCKDCKPRYKRLNELYGKMEKNQT----------LCIDIEDAMNITRKLWSKNFGCSFPREETVPVIAVSSFMLFLPIIFYL------SSFLHSEQ-----KKRKLIHPKRAKSSSSLM 306
BLAST of SMED30025874 vs. Ensembl Zebrafish
Match: ostm1 (osteoclastogenesis associated transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-081104-270]) HSP 1 Score: 70.0922 bits (170), Expect = 6.403e-13 Identity = 55/232 (23.71%), Postives = 95/232 (40.95%), Query Frame = 3 Query: 258 CFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKC-----DNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRL 938 C + +++P+++C NC K + + + + + GNV+C L +SD + + + WT C+ C + + D F+ N ++SC + + + N S C+ C Y +N Y M++ T +C DI D MN TR LWSK F C + V + S LF+ I+ L S++ H + + R+L Sbjct: 94 CLVFYARPVKVCQNCYTGFKGLKEIYLNISSGQ-GPGNVSCHDSLTRSDRLMLLYTLYSNLEDIWTSAKCDQCLTEHEEALTNDTRYFMATLNQSLSCFEQYKD---NHSE---------------LCKDCKPRYKRLNELYGKMEKNQT----------LCIDIEDAMNITRKLWSKNFGCSFPREETVPVIAVSSFMLFLPIIFYL------SSFLHSEQKKRKLIHRKL 290
BLAST of SMED30025874 vs. Ensembl Zebrafish
Match: ostm1 (osteoclastogenesis associated transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-081104-270]) HSP 1 Score: 53.1434 bits (126), Expect = 6.347e-8 Identity = 42/170 (24.71%), Postives = 66/170 (38.82%), Query Frame = 3 Query: 450 WTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKC-----DNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKY 944 WT C+ C + + D F+ N ++SC + + + N S C+ C Y +N Y M++ T +C DI D MN TR LWSK F C + V + S LF+ I+ L S++ H + + R+L + Sbjct: 14 WTSAKCDQCLTEHEEALTNDTRYFMATLNQSLSCFEQYKD---NHSE---------------LCKDCKPRYKRLNELYGKMEKNQT----------LCIDIEDAMNITRKLWSKNFGCSFPREETVPVIAVSSFMLFLPIIFYL------SSFLHSEQKKRKLIHRKLPH 149
BLAST of SMED30025874 vs. Ensembl Xenopus
Match: setd4 (SET domain containing 4 [Source:Xenbase;Acc:XB-GENE-5772357]) HSP 1 Score: 90.8929 bits (224), Expect = 3.359e-20 Identity = 71/260 (27.31%), Postives = 117/260 (45.00%), Query Frame = 3 Query: 207 CSMYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKC-----DNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDNGNST 971 C E AN SA + C + ++P+R+C +C E + +++ +++G V+C LLQSD I F++ W + C C + S + F+E+ S +C N S K T+ S G S CR C+ NY +N Y+ ++++ +C D+ D MN+TR LWSK F C D V + + LF+ I+ FY S+Y H + K+R+L + + N++ Sbjct: 32 CLRLLAEFANHSASLSSCLVYNARPVRLCQHCYTEYVQLQTTMQSI-EAPLQNGTVSCAASLLQSDRVQVIVILNDFFEQTWEESKCSQCLQNQSQSLLNTTSEFMEMFLSLGTC--------FNLSR-KEPTVVSQQGNFSSICRNCSKNYRELNDLYSKLEKE----------KALCIDLEDAMNSTRILWSKTFNCTVPCTDTVPVIAVSAFILFLPII----FY--LSSYLHSEQ-----KKRKLIFPNRIKSNAS 260
BLAST of SMED30025874 vs. Ensembl Mouse
Match: Ostm1 (osteopetrosis associated transmembrane protein 1 [Source:MGI Symbol;Acc:MGI:2655574]) HSP 1 Score: 72.0182 bits (175), Expect = 1.607e-13 Identity = 59/251 (23.51%), Postives = 108/251 (43.03%), Query Frame = 3 Query: 207 CSMYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRD-GNVN----CEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQV-FTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLK 941 C + AN SA+ T C + ++P+R+C C + V K M+N R+ GN + C LL +D + F+ W + NC +C + + S + F+ L N ++C + + + PK + CR C Y ++ Y+ MQ+ ++ +C D+ D MN TR LWS+ F C + + + + + + I+ + + L+S ++ + +RLK Sbjct: 88 CRELLMDFANSSAELTACMVRSARPVRLCQTCYPLFQQVAIK----MDNISRNIGNTSEGPRCGGSLLTADRMQIVLMVSEFFNSTWQEANCANCLTNNGEDLSNNTEDFLSLFNKTLACFEHNLQGHTYSLLPPKNYS---------EVCRNCKEAYKNLSLLYSQMQKLNGLENKAEPETHLCIDVEDAMNITRKLWSRTFNCSVTCSDTVSVVAVSVFILFLPVVFYLSSFLHSEQKKRKLILPKRLK 325
BLAST of SMED30025874 vs. Ensembl Mouse
Match: Ostm1 (osteopetrosis associated transmembrane protein 1 [Source:MGI Symbol;Acc:MGI:2655574]) HSP 1 Score: 55.0694 bits (131), Expect = 1.232e-8 Identity = 40/174 (22.99%), Postives = 72/174 (41.38%), Query Frame = 3 Query: 438 FDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDV-------SACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDN--SQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQR 932 F+ W + NC +C + + S + F+ L N ++C FE G + + CR C Y ++ Y+ MQ+ ++ +C D+ D MN TR LWS+ F C S + ++ +FI + + ++FY + + K R + +R Sbjct: 11 FNSTWQEANCANCLTNNGEDLSNNTEDFLSLFNKTLAC---------------FEHNLQGHTYSLLPPKNYSEVCRNCKEAYKNLSLLYSQMQKLNGLENKAEPETHLCIDVEDAMNITRKLWSRTFNCSVTCSDTVSVVAVSVFI-LFLPVVFYLSSFLHSEQKKRKLILPKR 168
BLAST of SMED30025874 vs. Ensembl Mouse
Match: Ostm1 (osteopetrosis associated transmembrane protein 1 [Source:MGI Symbol;Acc:MGI:2655574]) HSP 1 Score: 54.6842 bits (130), Expect = 2.393e-8 Identity = 42/176 (23.86%), Postives = 75/176 (42.61%), Query Frame = 3 Query: 438 FDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDV-------SACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDN--SQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRL 938 F+ W + NC +C + + S + F+ L N ++C FE G + + CR C Y ++ Y+ MQ+ ++ +C D+ D MN TR LWS+ F C S + ++ +FI + + ++FY S++ H + K+R+L Sbjct: 11 FNSTWQEANCANCLTNNGEDLSNNTEDFLSLFNKTLAC---------------FEHNLQGHTYSLLPPKNYSEVCRNCKEAYKNLSLLYSQMQKLNGLENKAEPETHLCIDVEDAMNITRKLWSRTFNCSVTCSDTVSVVAVSVFI-LFLPVVFY--LSSFLHSEQ-----KKRKL 163
BLAST of SMED30025874 vs. UniProt/SwissProt
Match: sp|Q86WC4|OSTM1_HUMAN (Osteopetrosis-associated transmembrane protein 1 OS=Homo sapiens OX=9606 GN=OSTM1 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.171e-14 Identity = 59/244 (24.18%), Postives = 106/244 (43.44%), Query Frame = 3 Query: 225 ELANISAQTTLCFLEFSQPLRICSNC----RNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQ--VFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDN--SQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQR 932 + AN SA+ T C + ++P+R+C C + +DN +A N + +C LL +D + F+ W + NC +C +S E S F+ L N ++C + + NA + + C+ C Y ++S Y+ MQ+ ++ +C D+ D MN TR LWS+ F C S + ++ +FI + + ++FY + + K R + +R Sbjct: 90 DFANSSAELTGCLVRSARPVRLCQTCYPLFQQVVSKMDNISRAAGNT---SESQSCARSLLMADRMQIVVILSEFFNTTWQEANCANCLTNNSEELSNSTVYFLNLFNHTLTCFEHNLQGNAHSLLQTKNYSEV----------CKNCREAYKTLSSLYSEMQKMNELENKAEPGTHLCIDVEDAMNITRKLWSRTFNCSVPCSDTVPVIAVSVFI-LFLPVVFYLSSFLHSEQKKRKLILPKR 319
BLAST of SMED30025874 vs. UniProt/SwissProt
Match: sp|Q8BGT0|OSTM1_MOUSE (Osteopetrosis-associated transmembrane protein 1 OS=Mus musculus OX=10090 GN=Ostm1 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.124e-12 Identity = 59/251 (23.51%), Postives = 108/251 (43.03%), Query Frame = 3 Query: 207 CSMYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRD-GNVN----CEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQV-FTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLK 941 C + AN SA+ T C + ++P+R+C C + V K M+N R+ GN + C LL +D + F+ W + NC +C + + S + F+ L N ++C + + + PK + CR C Y ++ Y+ MQ+ ++ +C D+ D MN TR LWS+ F C + + + + + + I+ + + L+S ++ + +RLK Sbjct: 88 CRELLMDFANSSAELTACMVRSARPVRLCQTCYPLFQQVAIK----MDNISRNIGNTSEGPRCGGSLLTADRMQIVLMVSEFFNSTWQEANCANCLTNNGEDLSNNTEDFLSLFNKTLACFEHNLQGHTYSLLPPKNYS---------EVCRNCKEAYKNLSLLYSQMQKLNGLENKAEPETHLCIDVEDAMNITRKLWSRTFNCSVTCSDTVSVVAVSVFILFLPVVFYLSSFLHSEQKKRKLILPKRLK 325
BLAST of SMED30025874 vs. TrEMBL
Match: H0ZPI5 (Osteoclastogenesis associated transmembrane protein 1 OS=Taeniopygia guttata OX=59729 GN=OSTM1 PE=4 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.267e-17 Identity = 65/247 (26.32%), Postives = 106/247 (42.91%), Query Frame = 3 Query: 231 ANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNV--NCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSA------CRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKC-----DNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQR 932 A SA T C ++P+R+C C + + ++ +++ + G+ NC LL SD + + + F++ W NC +C K +S S F++L N +++C FE G G D+S C+ CN Y+ +N Y ++Q +C D+ D MN TR LWS+ F C D V + S LF+ IV FY + + K R++ +R Sbjct: 62 AEGSAALTGCLGRRARPVRLCQGCHGHYRRLLAQYGSIVR-AVGGGSESHNCAKSLLTSDXAAVVVTLSEFFNETWEAANCANCLKNNSEGLSNSTEEFLDLFNKSLTC---------------FEHNLQGQGIDLSPNNYTEVCKNCNETYTKLNDLYNHLQRMNRQGGESAHSAHLCIDVEDAMNITRKLWSRTFNCSLPCSDTVPVIAVSSFILFLPIV----FYLSSFLHSKQKKRILILPKR 288
BLAST of SMED30025874 vs. TrEMBL
Match: Q0IHW1 (Uncharacterized protein OS=Xenopus tropicalis OX=8364 GN=ostm1 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 4.649e-17 Identity = 70/254 (27.56%), Postives = 116/254 (45.67%), Query Frame = 3 Query: 225 ELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKC-----DNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDNGNST 971 E AN SA + C + ++P+R+C +C E + +++ +++G V+C LLQSD I F++ W + C C + S + F+E+ S +C N S K T+ S G S CR C+ NY +N Y+ ++++ +C D+ D MN+TR LWSK F C D V + + LF+ I+ FY S+Y H + K+R+L + + N++ Sbjct: 33 EFANHSASLSSCLVYNARPVRLCQHCYTEYVQLQTTMQSI-EAPLQNGTVSCAASLLQSDRVQVIVILNDFFEQTWEESKCSQCLQNQSQSLLNTTSEFMEMFLSLGTC--------FNLSR-KEPTVVSQQGNFSSICRNCSKNYRELNDLYSKLEKE----------KALCIDLEDAMNSTRILWSKTFNCTVPCTDTVPVIAVSAFILFLPII----FY--LSSYLHSEQ-----KKRKLIFPNRIKSNAS 255
BLAST of SMED30025874 vs. TrEMBL
Match: A0A5G3JXG4 (SET domain containing 4 OS=Xenopus tropicalis OX=8364 GN=setd4 PE=4 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 5.275e-17 Identity = 71/260 (27.31%), Postives = 117/260 (45.00%), Query Frame = 3 Query: 207 CSMYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKC-----DNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDNGNST 971 C E AN SA + C + ++P+R+C +C E + +++ +++G V+C LLQSD I F++ W + C C + S + F+E+ S +C N S K T+ S G S CR C+ NY +N Y+ ++++ +C D+ D MN+TR LWSK F C D V + + LF+ I+ FY S+Y H + K+R+L + + N++ Sbjct: 32 CLRLLAEFANHSASLSSCLVYNARPVRLCQHCYTEYVQLQTTMQSI-EAPLQNGTVSCAASLLQSDRVQVIVILNDFFEQTWEESKCSQCLQNQSQSLLNTTSEFMEMFLSLGTC--------FNLSR-KEPTVVSQQGNFSSICRNCSKNYRELNDLYSKLEKE----------KALCIDLEDAMNSTRILWSKTFNCTVPCTDTVPVIAVSAFILFLPII----FY--LSSYLHSEQ-----KKRKLIFPNRIKSNAS 260
BLAST of SMED30025874 vs. TrEMBL
Match: A0A151MJP4 (Osteopetrosis-associated transmembrane protein 1 OS=Alligator mississippiensis OX=8496 GN=OSTM1 PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.727e-17 Identity = 66/239 (27.62%), Postives = 105/239 (43.93%), Query Frame = 3 Query: 243 AQTTLCFLEFSQPLRICSNC----RNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKC-----DNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQR 932 A + C + ++P+R+C +C R + +DN +A+ N+ + NC LL SD + F+K W + NC +C K S S F++L N + C + N + S + CR CN Y +N+ YT MQ + + + +C D+ D MN TR LWS+ F C D V + S LF+ +V FY + + K R++F +R Sbjct: 62 AALSGCLVRSARPVRLCQSCYGLFRAVTEQLDNITRAVGNS---SKSYNCAKSLLMSDRLQIVVVLSEFFNKTWEEANCANCLKNSSEGLSNATIEFLDLFNKTLMCFE------HNLQGQAISLVASNY---TEVCRNCNVTYKKLNTLYTEMQRESEHGESE-HSKHLCIDVEDAMNITRRLWSRTFNCSVPCSDTVPVIAVSSFILFLPVV----FYLSSFLHSKQKKRILFLPKR 283
BLAST of SMED30025874 vs. TrEMBL
Match: A0A452HIJ3 (Osteoclastogenesis associated transmembrane protein 1 OS=Gopherus agassizii OX=38772 GN=OSTM1 PE=4 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 8.398e-17 Identity = 63/239 (26.36%), Postives = 101/239 (42.26%), Query Frame = 3 Query: 231 ANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKC-----DNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQR 932 A+ S + T C + ++P+R+C +C ++V + K + NC LL SD + F+ W NC +C K +S S F+ L N+ + C + N + + I G CR C+ YS +N+ Y MQ+ R +C D+ D MN TR LWS+ F C D V + S LF+ ++ FY + + K R++ +R Sbjct: 19 ASSSVRLTGCLVRSARPVRLCQSCYRHFQSVTEQLKNITRAVGNSSESNCAKSLLMSDRVQLVVILSQFFNSTWEKANCANCLKNNSEGLSNSTIEFLNLFNTTLMCFE---------HNFQGQAINLGPSNHTEVCRNCSRTYSNLNALYNKMQKMT--EQRSEHRTPLCIDVEDAMNITRRLWSRTFNCSVPCSDTVPVIAVSSFILFLPVI----FYLSSFLHSKQKKRILILPKR 242
BLAST of SMED30025874 vs. Ensembl Cavefish
Match: ostm1 (osteoclastogenesis associated transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-081104-270]) HSP 1 Score: 77.0258 bits (188), Expect = 2.160e-15 Identity = 56/245 (22.86%), Postives = 97/245 (39.59%), Query Frame = 3 Query: 258 CFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKC-----DNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDNGNSTIL 977 C + ++P+R+C NC + ++ + + + + + GNV+C+ L++SD + + WT C C D + FI N ++SC + + C C A Y +N Y+ M + G C DI D MN TR LWSK+F C + V + S LF+ ++ L S + H + K+R+L + N +++ Sbjct: 95 CLVSSARPVRVCQNCYQAYSSFNDIYTNISSGQTQSGNVSCQDSLMRSDRLMLLFNLYSSLTDIWTSALCTQCLTPDQKSLTNSTLDFISYLNKSLSCFEKYQENHTEL------------------CMDCKATYKGLNEMYSTMLKN----------KGYCIDIEDAMNVTRRLWSKKFGCTVPREETVPVIAVSSFMLFLPVIFYL------SNFLHSEQ-----KKRKLIHPKRAKSNHSLM 300
BLAST of SMED30025874 vs. Ensembl Medaka
Match: ostm1 (osteoclastogenesis associated transmembrane protein 1 [Source:NCBI gene;Acc:101155979]) HSP 1 Score: 72.7886 bits (177), Expect = 6.388e-14 Identity = 61/263 (23.19%), Postives = 110/263 (41.83%), Query Frame = 3 Query: 189 DYKITNCSMYKQELANISAQT----TLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKC-----DNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMS 950 D +I+N Y EL +I +Q C + ++P+R+C C + ++ N + + ++++ GN +C L++SD + W NC+ C + + + T F++ N +SC + + G C+ C ++Y +N Y+ M++ + C D+ D MN TR LWSK F C + V + S LF+ I+ FY + + K R + + +R Y S Sbjct: 66 DLEISN---YCLELLSIFSQRYSDYVKCLVPAARPVRVCMKCYSGYGSLLNAYMNISSDQMGPGNESCRDSLMRSDRLMLVYVLFSNMQDLWEKSNCDFCITEKFQGVNNETTHFMKNLNQTLSCFEKYQQ-----------------GNHTELCKNCKSSYKGLNELYSSMEKTL------------CIDVEDAMNMTRILWSKNFNCSMPRGETVPVIAVSSFMLFLPII----FYLSSFLHSEQKKRKLIHPKRMKSYSS 292
BLAST of SMED30025874 vs. Planmine SMEST
Match: SMESG000014644.1 (SMESG000014644.1) HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0 Identity = 309/310 (99.68%), Postives = 309/310 (99.68%), Query Frame = 3 Query: 111 MINCRXXXXXXXXXXXXXXXXXXYFTDYKITNCSMYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDNGNSTILETMK*QVSDRNVIGALDIEIP 1040 MINCRISIIFIVFLLISESFSFEYFTDYKITNCSMYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDNGNSTILETMK QVSDRNVIGALDIEIP Sbjct: 1 MINCRISIIFIVFLLISESFSFEYFTDYKITNCSMYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDNGNSTILETMK-QVSDRNVIGALDIEIP 309
BLAST of SMED30025874 vs. Planmine SMEST
Match: SMESG000014644.1 (SMESG000014644.1) HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0 Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 3 Query: 111 MINCRXXXXXXXXXXXXXXXXXXYFTDYKITNCSMYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDN 959 MINCRISIIFIVFLLISESFSFEYFTDYKITNCSMYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDN Sbjct: 1 MINCRISIIFIVFLLISESFSFEYFTDYKITNCSMYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDN 283
BLAST of SMED30025874 vs. Planmine SMEST
Match: SMESG000014644.1 (SMESG000014644.1) HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0 Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 3 Query: 111 MINCRXXXXXXXXXXXXXXXXXXYFTDYKITNCSMYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDN 959 MINCRISIIFIVFLLISESFSFEYFTDYKITNCSMYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDN Sbjct: 1 MINCRISIIFIVFLLISESFSFEYFTDYKITNCSMYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDN 283
BLAST of SMED30025874 vs. Planmine SMEST
Match: SMESG000014644.1 (SMESG000014644.1) HSP 1 Score: 538.11 bits (1385), Expect = 0.000e+0 Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 3 Query: 213 MYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDNGNSTILETMK 989 MYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDNGNSTILETMK Sbjct: 1 MYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDNGNSTILETMK 259
BLAST of SMED30025874 vs. Planmine SMEST
Match: SMESG000014644.1 (SMESG000014644.1) HSP 1 Score: 517.694 bits (1332), Expect = 0.000e+0 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 3 Query: 213 MYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDN 959 MYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDN Sbjct: 1 MYKQELANISAQTTLCFLEFSQPLRICSNCRNEKKAVDNKFKALMNNKIRDGNVNCEPILLQSDVSTTIESFKLVFDKEWTDGNCEHCYKKDSPEFSVDYTRFIELENSAMSCLQVFTNASLNFSNPKFETIWSGFGFDVSACRACNANYSAVNSFYTYMQEKVTGSDRQLLWNGVCGDIGDIMNTTRYLWSKEFKCDNSQVNLIFSLPLFIVIVVTLLFYCLASTYFHDKMRVVFYKQRRLKYMSNDN 249 The following BLAST results are available for this feature:
BLAST of SMED30025874 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of SMED30025874 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30025874 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of SMED30025874 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of SMED30025874 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of SMED30025874 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 3
BLAST of SMED30025874 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 2
BLAST of SMED30025874 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30025874 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SMED30025874 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30025874 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30025874 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30025874 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of SMED30025874 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30025874 ID=SMED30025874|Name=SMED30025874|organism=Schmidtea mediterranea sexual|type=transcript|length=1216bpback to top protein sequence of SMED30025874-orf-1 >SMED30025874-orf-1 ID=SMED30025874-orf-1|Name=SMED30025874-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=294bp MINCRISIIFIVFLLISESFSFEYFTDYKITNCSMYKQELANISAQTTLCback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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