SMED30025868

Overview
NameSMED30025868
Smed IDSMED30025868
Length (bp)2629
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30025868 (SMED30025868) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30025868 (SMED30025868) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30025868 (SMED30025868) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30025868 (SMED30025868) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30025868

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30025868SMESG000081182.1 SMESG000080940.1 SMESG000078992.1 SMESG000078983.1 SMESG000077415.1 SMESG000077287.1 SMESG000076760.1 SMESG000075210.1 SMESG000074911.1 SMESG000074028.1 SMESG000068123.1 SMESG000065077.1 SMESG000064823.1 SMESG000064822.1 SMESG000064680.1 SMESG000063141.1 SMESG000061023.1 SMESG000059899.1 SMESG000059678.1 SMESG000059068.1 SMESG000058995.1 SMESG000058904.1 SMESG000058773.1 SMESG000057509.1 SMESG000056948.1 SMESG000056946.1 SMESG000055464.1 SMESG000052810.1 SMESG000051827.1 SMESG000050002.1 SMESG000048941.1 SMESG000048129.1 SMESG000044186.1 SMESG000043961.1 SMESG000043940.1 SMESG000043581.1 SMESG000043095.1 SMESG000042799.1 SMESG000039943.1 SMESG000039436.1 SMESG000037686.1 SMESG000036786.1 SMESG000035410.1 SMESG000035332.1 SMESG000035314.1 SMESG000034988.1 SMESG000033936.1 SMESG000030178.1 SMESG000029692.1 SMESG000028769.1 SMESG000021640.1 SMESG000016998.1 SMESG000016572.1 SMESG000014693.1 SMESG000014273.1 SMESG000013977.1 SMESG000010932.1 SMESG000009343.1 SMESG000008912.1 SMESG000008886.1 SMESG000008709.1 SMESG000007885.1 SMESG000007620.1 SMESG000005720.1 SMESG000002803.1 SMESG000001438.1 SMESG000000930.1 SMESG000000690.1 SMESG000000374.1 SmedASXL_014427SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30025868SMESG000081182.1 SMESG000078992.1 SMESG000078983.1 SMESG000077287.1 SMESG000076760.1 SMESG000075210.1 SMESG000074911.1 SMESG000074028.1 SMESG000068123.1 SMESG000065077.1 SMESG000064823.1 SMESG000064822.1 SMESG000064680.1 SMESG000063141.1 SMESG000061023.1 SMESG000059899.1 SMESG000059678.1 SMESG000058995.1 SMESG000058904.1 SMESG000057509.1 SMESG000056948.1 SMESG000056946.1 SMESG000052810.1 SMESG000050002.1 SMESG000048855.1 SMESG000048129.1 SMESG000044186.1 SMESG000043961.1 SMESG000043940.1 SMESG000043581.1 SMESG000042799.1 SMESG000039943.1 SMESG000039436.1 SMESG000037686.1 SMESG000036786.1 SMESG000035410.1 SMESG000035332.1 SMESG000035314.1 SMESG000034988.1 SMESG000030178.1 SMESG000029692.1 SMESG000028769.1 SMESG000016998.1 SMESG000016572.1 SMESG000014693.1 SMESG000014273.1 SMESG000013977.1 SMESG000010932.1 SMESG000009680.1 SMESG000009343.1 SMESG000008912.1 SMESG000008886.1 SMESG000008709.1 SMESG000007885.1 SMESG000007620.1 SMESG000005720.1 SMESG000001438.1 SMESG000000930.1 SMESG000000690.1 SMESG000000374.1 Contig10876uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30025868SMESG000081182.1 SMESG000078992.1 SMESG000078983.1 SMESG000077287.1 SMESG000076760.1 SMESG000075210.1 SMESG000074911.1 SMESG000074028.1 SMESG000068123.1 SMESG000065077.1 SMESG000064823.1 SMESG000064822.1 SMESG000064680.1 SMESG000063141.1 SMESG000061023.1 SMESG000059899.1 SMESG000059678.1 SMESG000058995.1 SMESG000058904.1 SMESG000057509.1 SMESG000056948.1 SMESG000056946.1 SMESG000052810.1 SMESG000050002.1 SMESG000048855.1 SMESG000048129.1 SMESG000044186.1 SMESG000043961.1 SMESG000043940.1 SMESG000043581.1 SMESG000042799.1 SMESG000039943.1 SMESG000039436.1 SMESG000037686.1 SMESG000036786.1 SMESG000035410.1 SMESG000035332.1 SMESG000035314.1 SMESG000034988.1 SMESG000030178.1 SMESG000029692.1 SMESG000028769.1 SMESG000016998.1 SMESG000016572.1 SMESG000014693.1 SMESG000014273.1 SMESG000013977.1 SMESG000010932.1 SMESG000009680.1 SMESG000009343.1 SMESG000008912.1 SMESG000008886.1 SMESG000008709.1 SMESG000007885.1 SMESG000007620.1 SMESG000005720.1 SMESG000001438.1 SMESG000000930.1 SMESG000000690.1 SMESG000000374.1 Contig10876newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30025868SMESG000081182.1 SMESG000080940.1 SMESG000078992.1 SMESG000078983.1 SMESG000077287.1 SMESG000075210.1 SMESG000074911.1 SMESG000074028.1 SMESG000072039.1 SMESG000071706.1 SMESG000068337.1 SMESG000068123.1 SMESG000065077.1 SMESG000064823.1 SMESG000064822.1 SMESG000064680.1 SMESG000063141.1 SMESG000061023.1 SMESG000059899.1 SMESG000059765.1 SMESG000059761.1 SMESG000059678.1 SMESG000058904.1 SMESG000058773.1 SMESG000057509.1 SMESG000056948.1 SMESG000056946.1 SMESG000055464.1 SMESG000053941.1 SMESG000052810.1 SMESG000051827.1 SMESG000050002.1 SMESG000049686.1 SMESG000048129.1 SMESG000043961.1 SMESG000043940.1 SMESG000043581.1 SMESG000040860.1 SMESG000040455.1 SMESG000039943.1 SMESG000039785.1 SMESG000039436.1 SMESG000037686.1 SMESG000036786.1 SMESG000035410.1 SMESG000035332.1 SMESG000035314.1 SMESG000030178.1 SMESG000029692.1 SMESG000029268.1 SMESG000028769.1 SMESG000021640.1 SMESG000016998.1 SMESG000016572.1 SMESG000016077.1 SMESG000015785.1 SMESG000014693.1 SMESG000014273.1 SMESG000013977.1 SMESG000010932.1 SMESG000009343.1 SMESG000008912.1 SMESG000008886.1 SMESG000008709.1 SMESG000007885.1 SMESG000007620.1 SMESG000005720.1 SMESG000002803.1 SMESG000002488.1 SMESG000001438.1 SMESG000000690.1 SMESG000000374.1 Contig36656newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30025868SMESG000081182.1 SMESG000080940.1 SMESG000078992.1 SMESG000078983.1 SMESG000077287.1 SMESG000075210.1 SMESG000074911.1 SMESG000074028.1 SMESG000072039.1 SMESG000071706.1 SMESG000068337.1 SMESG000068123.1 SMESG000065077.1 SMESG000064823.1 SMESG000064822.1 SMESG000064680.1 SMESG000063141.1 SMESG000061023.1 SMESG000059899.1 SMESG000059765.1 SMESG000059761.1 SMESG000059678.1 SMESG000058904.1 SMESG000058773.1 SMESG000057509.1 SMESG000056948.1 SMESG000056946.1 SMESG000055464.1 SMESG000053941.1 SMESG000052810.1 SMESG000051827.1 SMESG000050002.1 SMESG000049686.1 SMESG000048129.1 SMESG000043961.1 SMESG000043940.1 SMESG000043581.1 SMESG000040860.1 SMESG000040455.1 SMESG000039943.1 SMESG000039785.1 SMESG000039436.1 SMESG000037686.1 SMESG000036786.1 SMESG000035410.1 SMESG000035332.1 SMESG000035314.1 SMESG000030178.1 SMESG000029692.1 SMESG000029268.1 SMESG000028769.1 SMESG000021640.1 SMESG000016998.1 SMESG000016572.1 SMESG000016077.1 SMESG000015785.1 SMESG000014693.1 SMESG000014273.1 SMESG000013977.1 SMESG000010932.1 SMESG000009343.1 SMESG000008912.1 SMESG000008886.1 SMESG000008709.1 SMESG000007885.1 SMESG000007620.1 SMESG000005720.1 SMESG000002803.1 SMESG000002488.1 SMESG000001438.1 SMESG000000690.1 SMESG000000374.1 Contig36656uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
nervous systemSMED30025868SMESG000081182.1 SMESG000080940.1 SMESG000078992.1 SMESG000078983.1 SMESG000077287.1 SMESG000075210.1 SMESG000074911.1 SMESG000074028.1 SMESG000072039.1 SMESG000071706.1 SMESG000068337.1 SMESG000068123.1 SMESG000065077.1 SMESG000064823.1 SMESG000064822.1 SMESG000064680.1 SMESG000063141.1 SMESG000061023.1 SMESG000059899.1 SMESG000059678.1 SMESG000059068.1 SMESG000058904.1 SMESG000057509.1 SMESG000056948.1 SMESG000056946.1 SMESG000055464.1 SMESG000053941.1 SMESG000052810.1 SMESG000051827.1 SMESG000050002.1 SMESG000049686.1 SMESG000048129.1 SMESG000043961.1 SMESG000043940.1 SMESG000043581.1 SMESG000042799.1 SMESG000040860.1 SMESG000039943.1 SMESG000039785.1 SMESG000039436.1 SMESG000037686.1 SMESG000036786.1 SMESG000035410.1 SMESG000035332.1 SMESG000035314.1 SMESG000034988.1 SMESG000031376.1 SMESG000030178.1 SMESG000029692.1 SMESG000029268.1 SMESG000028769.1 SMESG000021640.1 SMESG000016998.1 SMESG000016572.1 SMESG000016077.1 SMESG000015785.1 SMESG000014693.1 SMESG000013977.1 SMESG000010932.1 SMESG000009343.1 SMESG000008912.1 SMESG000008886.1 SMESG000008709.1 SMESG000007885.1 SMESG000007620.1 SMESG000005720.1 SMESG000002803.1 SMESG000001438.1 SMESG000000930.1 SMESG000000690.1 SMESG000000374.1 dd_Smed_v4_7997_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30025868SMESG000081182.1 SMESG000080940.1 SMESG000078992.1 SMESG000078983.1 SMESG000077287.1 SMESG000075210.1 SMESG000074911.1 SMESG000074028.1 SMESG000072039.1 SMESG000071706.1 SMESG000068337.1 SMESG000068123.1 SMESG000065077.1 SMESG000064823.1 SMESG000064822.1 SMESG000064680.1 SMESG000063141.1 SMESG000061023.1 SMESG000059899.1 SMESG000059678.1 SMESG000059068.1 SMESG000058904.1 SMESG000057509.1 SMESG000056948.1 SMESG000056946.1 SMESG000055464.1 SMESG000053941.1 SMESG000052810.1 SMESG000051827.1 SMESG000050002.1 SMESG000049686.1 SMESG000048129.1 SMESG000043961.1 SMESG000043940.1 SMESG000043581.1 SMESG000042799.1 SMESG000040860.1 SMESG000039943.1 SMESG000039785.1 SMESG000039436.1 SMESG000037686.1 SMESG000036786.1 SMESG000035410.1 SMESG000035332.1 SMESG000035314.1 SMESG000034988.1 SMESG000031376.1 SMESG000030178.1 SMESG000029692.1 SMESG000029268.1 SMESG000028769.1 SMESG000021640.1 SMESG000016998.1 SMESG000016572.1 SMESG000016077.1 SMESG000015785.1 SMESG000014693.1 SMESG000013977.1 SMESG000010932.1 SMESG000009343.1 SMESG000008912.1 SMESG000008886.1 SMESG000008709.1 SMESG000007885.1 SMESG000007620.1 SMESG000005720.1 SMESG000002803.1 SMESG000001438.1 SMESG000000930.1 SMESG000000690.1 SMESG000000374.1 dd_Smed_v4_7997_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30025868SMESG000081182.1 SMESG000080940.1 SMESG000078992.1 SMESG000078983.1 SMESG000077287.1 SMESG000075210.1 SMESG000074911.1 SMESG000074028.1 SMESG000072039.1 SMESG000071706.1 SMESG000068337.1 SMESG000068123.1 SMESG000065077.1 SMESG000064823.1 SMESG000064822.1 SMESG000064680.1 SMESG000063141.1 SMESG000061023.1 SMESG000059899.1 SMESG000059678.1 SMESG000059068.1 SMESG000058904.1 SMESG000057509.1 SMESG000056948.1 SMESG000056946.1 SMESG000055464.1 SMESG000053941.1 SMESG000052810.1 SMESG000051827.1 SMESG000050002.1 SMESG000049686.1 SMESG000048129.1 SMESG000043961.1 SMESG000043940.1 SMESG000043581.1 SMESG000042799.1 SMESG000040860.1 SMESG000039943.1 SMESG000039785.1 SMESG000039436.1 SMESG000037686.1 SMESG000036786.1 SMESG000035410.1 SMESG000035332.1 SMESG000035314.1 SMESG000034988.1 SMESG000031376.1 SMESG000030178.1 SMESG000029692.1 SMESG000029268.1 SMESG000028769.1 SMESG000021640.1 SMESG000016998.1 SMESG000016572.1 SMESG000016077.1 SMESG000015785.1 SMESG000014693.1 SMESG000013977.1 SMESG000010932.1 SMESG000009343.1 SMESG000008912.1 SMESG000008886.1 SMESG000008709.1 SMESG000007885.1 SMESG000007620.1 SMESG000005720.1 SMESG000002803.1 SMESG000001438.1 SMESG000000930.1 SMESG000000690.1 SMESG000000374.1 dd_Smed_v4_7997_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30025868SMESG000081182.1 SMESG000080940.1 SMESG000078992.1 SMESG000078983.1 SMESG000077287.1 SMESG000075210.1 SMESG000074911.1 SMESG000074028.1 SMESG000072039.1 SMESG000071706.1 SMESG000068337.1 SMESG000068123.1 SMESG000065077.1 SMESG000064823.1 SMESG000064822.1 SMESG000064680.1 SMESG000063141.1 SMESG000061023.1 SMESG000059899.1 SMESG000059678.1 SMESG000059068.1 SMESG000058904.1 SMESG000057509.1 SMESG000056948.1 SMESG000056946.1 SMESG000055464.1 SMESG000053941.1 SMESG000052810.1 SMESG000051827.1 SMESG000050002.1 SMESG000049686.1 SMESG000048129.1 SMESG000043961.1 SMESG000043940.1 SMESG000043581.1 SMESG000042799.1 SMESG000040860.1 SMESG000039943.1 SMESG000039785.1 SMESG000039436.1 SMESG000037686.1 SMESG000036786.1 SMESG000035410.1 SMESG000035332.1 SMESG000035314.1 SMESG000034988.1 SMESG000031376.1 SMESG000030178.1 SMESG000029692.1 SMESG000029268.1 SMESG000028769.1 SMESG000021640.1 SMESG000016998.1 SMESG000016572.1 SMESG000016077.1 SMESG000015785.1 SMESG000014693.1 SMESG000013977.1 SMESG000010932.1 SMESG000009343.1 SMESG000008912.1 SMESG000008886.1 SMESG000008709.1 SMESG000007885.1 SMESG000007620.1 SMESG000005720.1 SMESG000002803.1 SMESG000001438.1 SMESG000000930.1 SMESG000000690.1 SMESG000000374.1 dd_Smed_v4_7997_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult colorimetric in situ hybridization evidence
neoblastSMED30025868SMESG000081182.1 SMESG000080940.1 SMESG000078992.1 SMESG000078983.1 SMESG000077287.1 SMESG000075210.1 SMESG000074911.1 SMESG000074028.1 SMESG000072039.1 SMESG000071706.1 SMESG000068337.1 SMESG000068123.1 SMESG000065077.1 SMESG000064823.1 SMESG000064822.1 SMESG000064680.1 SMESG000063141.1 SMESG000061023.1 SMESG000059899.1 SMESG000059678.1 SMESG000059068.1 SMESG000058904.1 SMESG000057509.1 SMESG000056948.1 SMESG000056946.1 SMESG000055464.1 SMESG000053941.1 SMESG000052810.1 SMESG000051827.1 SMESG000050002.1 SMESG000049686.1 SMESG000048129.1 SMESG000043961.1 SMESG000043940.1 SMESG000043581.1 SMESG000042799.1 SMESG000040860.1 SMESG000039943.1 SMESG000039785.1 SMESG000039436.1 SMESG000037686.1 SMESG000036786.1 SMESG000035410.1 SMESG000035332.1 SMESG000035314.1 SMESG000034988.1 SMESG000031376.1 SMESG000030178.1 SMESG000029692.1 SMESG000029268.1 SMESG000028769.1 SMESG000021640.1 SMESG000016998.1 SMESG000016572.1 SMESG000016077.1 SMESG000015785.1 SMESG000014693.1 SMESG000013977.1 SMESG000010932.1 SMESG000009343.1 SMESG000008912.1 SMESG000008886.1 SMESG000008709.1 SMESG000007885.1 SMESG000007620.1 SMESG000005720.1 SMESG000002803.1 SMESG000001438.1 SMESG000000930.1 SMESG000000690.1 SMESG000000374.1 dd_Smed_v4_7997_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30025868SMESG000081182.1 SMESG000080940.1 SMESG000078992.1 SMESG000078983.1 SMESG000077287.1 SMESG000075210.1 SMESG000074911.1 SMESG000074028.1 SMESG000072039.1 SMESG000071706.1 SMESG000068337.1 SMESG000068123.1 SMESG000065077.1 SMESG000064823.1 SMESG000064822.1 SMESG000064680.1 SMESG000063141.1 SMESG000061023.1 SMESG000059899.1 SMESG000059678.1 SMESG000059068.1 SMESG000058904.1 SMESG000057509.1 SMESG000056948.1 SMESG000056946.1 SMESG000055464.1 SMESG000053941.1 SMESG000052810.1 SMESG000051827.1 SMESG000050002.1 SMESG000049686.1 SMESG000048129.1 SMESG000043961.1 SMESG000043940.1 SMESG000043581.1 SMESG000042799.1 SMESG000040860.1 SMESG000039943.1 SMESG000039785.1 SMESG000039436.1 SMESG000037686.1 SMESG000036786.1 SMESG000035410.1 SMESG000035332.1 SMESG000035314.1 SMESG000034988.1 SMESG000031376.1 SMESG000030178.1 SMESG000029692.1 SMESG000029268.1 SMESG000028769.1 SMESG000021640.1 SMESG000016998.1 SMESG000016572.1 SMESG000016077.1 SMESG000015785.1 SMESG000014693.1 SMESG000013977.1 SMESG000010932.1 SMESG000009343.1 SMESG000008912.1 SMESG000008886.1 SMESG000008709.1 SMESG000007885.1 SMESG000007620.1 SMESG000005720.1 SMESG000002803.1 SMESG000001438.1 SMESG000000930.1 SMESG000000690.1 SMESG000000374.1 dd_Smed_v4_7997_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30025868SMESG000081182.1 SMESG000080940.1 SMESG000078992.1 SMESG000078983.1 SMESG000077287.1 SMESG000075210.1 SMESG000074911.1 SMESG000074028.1 SMESG000072039.1 SMESG000071706.1 SMESG000068337.1 SMESG000068123.1 SMESG000065077.1 SMESG000064823.1 SMESG000064822.1 SMESG000064680.1 SMESG000063141.1 SMESG000061023.1 SMESG000059899.1 SMESG000059678.1 SMESG000059068.1 SMESG000058904.1 SMESG000057509.1 SMESG000056948.1 SMESG000056946.1 SMESG000055464.1 SMESG000053941.1 SMESG000052810.1 SMESG000051827.1 SMESG000050002.1 SMESG000049686.1 SMESG000048129.1 SMESG000043961.1 SMESG000043940.1 SMESG000043581.1 SMESG000042799.1 SMESG000040860.1 SMESG000039943.1 SMESG000039785.1 SMESG000039436.1 SMESG000037686.1 SMESG000036786.1 SMESG000035410.1 SMESG000035332.1 SMESG000035314.1 SMESG000034988.1 SMESG000031376.1 SMESG000030178.1 SMESG000029692.1 SMESG000029268.1 SMESG000028769.1 SMESG000021640.1 SMESG000016998.1 SMESG000016572.1 SMESG000016077.1 SMESG000015785.1 SMESG000014693.1 SMESG000013977.1 SMESG000010932.1 SMESG000009343.1 SMESG000008912.1 SMESG000008886.1 SMESG000008709.1 SMESG000007885.1 SMESG000007620.1 SMESG000005720.1 SMESG000002803.1 SMESG000001438.1 SMESG000000930.1 SMESG000000690.1 SMESG000000374.1 dd_Smed_v4_7997_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30025868 vs. Planmine SMEST
Match: SMESG000076760.1 (SMESG000076760.1)

HSP 1 Score: 466.077 bits (1198), Expect = 2.055e-157
Identity = 239/261 (91.57%), Postives = 252/261 (96.55%), Query Frame = 2
Query: 1238 MNNENSEKYCDYYQRPGHRSSKYHAQIECWNCGKLGHTATRCRVPKISFQCWQENHLPAAYRTRRNHDQNNNTKTPESKSTEMKNEINMPARMCNYLAVDQPHTKINQQSEINVLQGTSRKQQIKCDPIKHQQDWNTLKITEGLEAEKRYSEIGTFQAXXXXXXXXXXXXXXXXADIIKLTTNDSQVEKINEMWEKRINGVLRINMMRAITKKEPSVQRIPQIKIESEIIERMENVNLNNEDHNEPAMGSDVNRNIETRNQ 2020
            M++ENSEKYCDYYQR  HRSSKYHAQIECWNCGKLGHTATRCR+PKISFQC QENHLPAAYRTRRNHD+NNNTKTPESK TEM+NE +MPARMC+YLAVDQPHT+INQQSEINVLQG SRKQQIKCDPIKHQQDWNTLKITE LEAEKRYSE+GTFQARIEEER RRRKEELLKADIIKLTTNDSQV+KINEMWEKRI+GVLRINMMRAITKKEPSVQ+IPQI+IESEIIERMENVNLNNEDHNEPAMGSDVNRNIETR Q
Sbjct:    1 MSSENSEKYCDYYQRSCHRSSKYHAQIECWNCGKLGHTATRCRLPKISFQCRQENHLPAAYRTRRNHDENNNTKTPESKLTEMQNEKDMPARMCSYLAVDQPHTEINQQSEINVLQGISRKQQIKCDPIKHQQDWNTLKITEALEAEKRYSEMGTFQARIEEERWRRRKEELLKADIIKLTTNDSQVKKINEMWEKRIHGVLRINMMRAITKKEPSVQKIPQIRIESEIIERMENVNLNNEDHNEPAMGSDVNRNIETRTQ 261          
BLAST of SMED30025868 vs. Planmine SMEST
Match: SMESG000000690.1 (SMESG000000690.1)

HSP 1 Score: 464.151 bits (1193), Expect = 2.678e-154
Identity = 237/261 (90.80%), Postives = 250/261 (95.79%), Query Frame = 2
Query: 1238 MNNENSEKYCDYYQRPGHRSSKYHAQIECWNCGKLGHTATRCRVPKISFQCWQENHLPAAYRTRRNHDQNNNTKTPESKSTEMKNEINMPARMCNYLAVDQPHTKINQQSEINVLQGTSRKQQIKCDPIKHQQDWNTLKITEGLEAEKRYSEIGTFQAXXXXXXXXXXXXXXXXADIIKLTTNDSQVEKINEMWEKRINGVLRINMMRAITKKEPSVQRIPQIKIESEIIERMENVNLNNEDHNEPAMGSDVNRNIETRNQ 2020
            MNNENSEKYCD+YQRPGHRSSKYHAQIECWNCGK GHTATRCR+PKISFQCWQENHLPAAYRTRRNHD+NNNTKTPESKSTE++NEIN+P RMC+Y A +QPHT+INQQSE NVLQG SRKQQIK DPIKHQQDWNTLK+TE LEAEKRYSEI TFQARIEEER RRRKEELLKADIIKLTTNDSQV+KINEMWEKRINGV RINMMRAITKKEPSVQRIPQI+IESEIIERMENVNLNNEDHNEPA+GSDVNRNIETRNQ
Sbjct:    1 MNNENSEKYCDHYQRPGHRSSKYHAQIECWNCGKSGHTATRCRIPKISFQCWQENHLPAAYRTRRNHDENNNTKTPESKSTELQNEINIPTRMCSYFADNQPHTEINQQSEKNVLQGISRKQQIKWDPIKHQQDWNTLKMTEALEAEKRYSEIRTFQARIEEERWRRRKEELLKADIIKLTTNDSQVKKINEMWEKRINGVQRINMMRAITKKEPSVQRIPQIRIESEIIERMENVNLNNEDHNEPAVGSDVNRNIETRNQ 261          
BLAST of SMED30025868 vs. Planmine SMEST
Match: SMESG000028769.1 (SMESG000028769.1)

HSP 1 Score: 459.914 bits (1182), Expect = 1.333e-153
Identity = 233/261 (89.27%), Postives = 247/261 (94.64%), Query Frame = 2
Query: 1238 MNNENSEKYCDYYQRPGHRSSKYHAQIECWNCGKLGHTATRCRVPKISFQCWQENHLPAAYRTRRNHDQNNNTKTPESKSTEMKNEINMPARMCNYLAVDQPHTKINQQSEINVLQGTSRKQQIKCDPIKHQQDWNTLKITEGLEAEKRYSEIGTFQAXXXXXXXXXXXXXXXXADIIKLTTNDSQVEKINEMWEKRINGVLRINMMRAITKKEPSVQRIPQIKIESEIIERMENVNLNNEDHNEPAMGSDVNRNIETRNQ 2020
            MNNENSEKYCDYYQRPGHRSSKYHAQIECWNCGKLGHTATRCRVPKISFQCWQENHLP AYRTRRN+D+NNNTKT ESKSTEM+NEIN+  RMC+YL  +QPHT+INQQSEI+VLQG SRKQQIKCDP+KHQQDWN LKITE LEAEKRYSEIGTFQARIEEE   R+KEELLKADIIKLTTNDSQVEKINEMW KRINGV RINMMRAITKKEPSVQRIPQI+IES+IIERMENVNLNNEDHNEPA+GS+VNRNIETRNQ
Sbjct:    1 MNNENSEKYCDYYQRPGHRSSKYHAQIECWNCGKLGHTATRCRVPKISFQCWQENHLPTAYRTRRNNDENNNTKTTESKSTEMQNEINILTRMCSYLPDNQPHTEINQQSEIDVLQGMSRKQQIKCDPVKHQQDWNMLKITEALEAEKRYSEIGTFQARIEEESWSRKKEELLKADIIKLTTNDSQVEKINEMWAKRINGVPRINMMRAITKKEPSVQRIPQIRIESKIIERMENVNLNNEDHNEPAIGSEVNRNIETRNQ 261          
BLAST of SMED30025868 vs. Planmine SMEST
Match: SMESG000080940.1 (SMESG000080940.1)

HSP 1 Score: 450.284 bits (1157), Expect = 2.391e-150
Identity = 235/261 (90.04%), Postives = 247/261 (94.64%), Query Frame = 2
Query: 1238 MNNENSEKYCDYYQRPGHRSSKYHAQIECWNCGKLGHTATRCRVPKISFQCWQENHLPAAYRTRRNHDQNNNTKTPESKSTEMKNEINMPARMCNYLAVDQPHTKINQQSEINVLQGTSRKQQIKCDPIKHQQDWNTLKITEGLEAEKRYSEIGTFQAXXXXXXXXXXXXXXXXADIIKLTTNDSQVEKINEMWEKRINGVLRINMMRAITKKEPSVQRIPQIKIESEIIERMENVNLNNEDHNEPAMGSDVNRNIETRNQ 2020
            MNNENSEKYCDYYQRP HRSSKYHAQIECWNCGKLGHTATRCR+PKISFQCWQENHLP AYRTRRNHDQNNNT+TPESKSTEM+NEIN+P RMC+YL  +QPHT+INQQSEINVLQG SRKQQIK DPIKHQQDWNTLK+TE LEAEKRYSEI TFQARIEEER RRRKEELLKADIIKLTTNDSQVEKINEMWEKRIN + RINM+RAITKKEPSVQRIPQI+IESEIIERMENVNLNNEDHNEPA+ S VNRNIETRNQ
Sbjct:    1 MNNENSEKYCDYYQRPDHRSSKYHAQIECWNCGKLGHTATRCRIPKISFQCWQENHLPTAYRTRRNHDQNNNTETPESKSTEMQNEINIPTRMCSYLPDNQPHTEINQQSEINVLQGISRKQQIKWDPIKHQQDWNTLKMTEALEAEKRYSEIRTFQARIEEERWRRRKEELLKADIIKLTTNDSQVEKINEMWEKRINRIPRINMVRAITKKEPSVQRIPQIRIESEIIERMENVNLNNEDHNEPAIESYVNRNIETRNQ 261          
BLAST of SMED30025868 vs. Planmine SMEST
Match: SMESG000043095.1 (SMESG000043095.1)

HSP 1 Score: 445.277 bits (1144), Expect = 1.549e-147
Identity = 227/261 (86.97%), Postives = 241/261 (92.34%), Query Frame = 2
Query: 1238 MNNENSEKYCDYYQRPGHRSSKYHAQIECWNCGKLGHTATRCRVPKISFQCWQENHLPAAYRTRRNHDQNNNTKTPESKSTEMKNEINMPARMCNYLAVDQPHTKINQQSEINVLQGTSRKQQIKCDPIKHQQDWNTLKITEGLEAEKRYSEIGTFQAXXXXXXXXXXXXXXXXADIIKLTTNDSQVEKINEMWEKRINGVLRINMMRAITKKEPSVQRIPQIKIESEIIERMENVNLNNEDHNEPAMGSDVNRNIETRNQ 2020
            MN ENSEKYCDYYQRPGHRSSKYH QIECWNCGKLGHTAT+CRVPKISFQCWQENHLP AYRTRRN+D+NNNTKT ESKSTEM+NE +MPARMC+YLA +QPH +INQQSEINVLQ  S KQQIKCDPIKHQQDWNTLKITE LEAEKRYS++GTFQA IEEER R RKE+LLKADIIKLTTNDSQV+KINEMWEKRING+ RINMMRAIT KEPSVQRIPQI+IESEIIERMENVNLNN DHNEP   SDVNRNIETRNQ
Sbjct:    1 MNTENSEKYCDYYQRPGHRSSKYHEQIECWNCGKLGHTATKCRVPKISFQCWQENHLPTAYRTRRNNDENNNTKTAESKSTEMQNEKDMPARMCSYLADNQPHMEINQQSEINVLQDISTKQQIKCDPIKHQQDWNTLKITEALEAEKRYSKMGTFQAYIEEERWRSRKEKLLKADIIKLTTNDSQVKKINEMWEKRINGLPRINMMRAITNKEPSVQRIPQIRIESEIIERMENVNLNNGDHNEPTTESDVNRNIETRNQ 261          
The following BLAST results are available for this feature:
BLAST of SMED30025868 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025868 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025868 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025868 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025868 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025868 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025868 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025868 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025868 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025868 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025868 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025868 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025868 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025868 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000076760.12.055e-15791.57SMESG000076760.1[more]
SMESG000000690.12.678e-15490.80SMESG000000690.1[more]
SMESG000028769.11.333e-15389.27SMESG000028769.1[more]
SMESG000080940.12.391e-15090.04SMESG000080940.1[more]
SMESG000043095.11.549e-14786.97SMESG000043095.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30025868 ID=SMED30025868|Name=SMED30025868|organism=Schmidtea mediterranea sexual|type=transcript|length=2629bp
CGGAAATTAAGGAGATGCATAGTAATAGAACACAGTCTCAACTCGGATTA
AAAGGGATGTGCATTAACGGAGCATAATCTCAACTAGAATTAGAAAAGAC
ATGTGACAAAGAGACATGGTCCACGACTATAGTAGAAAATGTAAATTGTG
AATGAGGAAAAAGAAATAACGAGGAATCAGTCAAGGAAACAGAATGAATC
AATAAAATAAATAATATCCGTGCACGGAGAAGGGAATATATTGTATAAAA
GCGATAGCAATTAACGACATTAAAAACAAAAGATTAAGAAAACGGAAAAC
AATGTAACCGATGATAACGATTGATGAGAAATAACGAAAATAGGGAAAAT
GGATTAAGAAAACGAAAGGATAAAACAAAAAGACGAAACTAAAAGCCAGA
TGAGGTTAAAACAAAGTGAGATAGATAGAACGATGAAAGATAAATGAGAA
AGGGAGAAAATAAAAATTATTTAAGGATAAATAAAAGGAGAATGCGAAAC
GCAAAATGAATGAAAATAAAAATACGAGGGGTAATAGAACTTGGGAAACG
GCGTGGTCAAACGAATTGTTAAAAATAAATGATTATTACGACTATATAGA
TAATTGTTACTACCCCACATAGATAATTAAAAATCGACGCAAAACAAAAT
CAAAGAGATAAAGACTACTGGTGGGAATTATAATGAAAAATGTGACGAAG
CCTGGGGAATACGAATTATCATAAGTACGAGTAATATAACCGAGATAATT
GGGAGAAACGGACACTATGGGAATCCTGAGAAACGAGGATAAGTTAACAT
TGATAAAAAGGACAAATGAGTAAAGAGAATCTAGATGAAATAAAAGGTGG
TTAAACGCAATTATAATATAAATACCGTTGGTTGGAATTAAAATTAATAA
CGCAAGAAAAACGAACAGTAAAATGCTATGCTATGTAATCGTTGTAAAGT
ACGATTCATATATGTTTAATAAACAGTGGAGAGGTGATATTTTTCTATTC
AGGTAAATCAATCAAACAAGACAACAATTCAGTATCGACAACAACCAAGC
CAACAATTCAGTAACGATAACAACCAAGTCAGTGGTCCGGTATCGATAGT
AACAAAGAGATTAACCCCGTATCAACAACAACCAAGCCAACAATCCAGTA
TCGATAACAAGCAAGTCAATAATTCAGTAGCAACAACAACCAAGCCAATC
AAGAAATAAAGCAGCAAGACCAGATTCGTAAACGACGATGAATAACGAGA
ATTCTGAGAAATATTGTGATTACTACCAAAGACCAGGTCACAGATCTAGT
AAATATCATGCGCAAATAGAATGTTGGAATTGTGGAAAATTAGGACATAC
CGCAACAAGATGTAGAGTACCCAAAATAAGTTTCCAATGTTGGCAAGAGA
ATCACCTCCCAGCTGCATATCGAACAAGAAGAAATCATGACCAAAATAAC
AACACCAAAACGCCAGAAAGCAAGTCAACCGAGATGAAAAATGAGATAAA
CATGCCTGCAAGAATGTGTAACTATTTGGCCGTTGACCAACCACACACGA
AAATAAATCAACAATCAGAAATAAATGTACTACAAGGTACATCAAGGAAA
CAACAGATAAAATGTGACCCAATAAAACATCAGCAAGACTGGAACACGTT
GAAGATTACCGAAGGATTAGAAGCAGAAAAACGGTATAGTGAGATAGGAA
CATTTCAAGCGCGTATAGAAGAAGAACGTTTGAGAAGAAGGAAAGAGGAG
TTGTTGAAAGCTGACATAATAAAATTAACGACCAATGATAGCCAAGTAGA
AAAGATTAACGAAATGTGGGAAAAACGAATAAATGGGGTACTAAGAATCA
ATATGATGCGAGCAATTACAAAAAAGGAACCAAGTGTACAAAGAATTCCA
CAAATAAAGATTGAAAGCGAGATAATCGAAAGAATGGAAAACGTGAATTT
GAATAATGAGGATCACAATGAACCGGCAATGGGAAGTGATGTAAATAGAA
ATATCGAAACAAGAAATCAAGCATACATGAATTATATGAGATATATGATC
GGGTATGTCGCTGGTTATTAATTATTTTTGAAAAATACAAAATTGTGACG
TCACAGTTCTTAAACCTCCTTGAGCACAAATGTGTATCCCTCCCTCTAGT
GCGTGACGTCATTTATGGACGGTTTTTATGTACTGTTGGGTCGTTTAAAA
TTAATATCTGTTATTTTATAATTATATTTCTGCGATTTCATTTGTTCCTG
TAGATTACGTTGTAACGATTTTGGCTTTTTGTTTCCAACTTGTTTTTTCT
CCTTTCCACGTCACGGTTCAATTTAGCCCGGTTTCTTGATTATTATTAAA
TACATTAATTTCCTTCTCGAGTATTTGTAACAACTCATCAACCACAAAAC
TCGTCTCTCGCGTATTTATTTTGTATAATATCCAATTCTTTCAATTTTTT
GCATGTCATTTTGGAAATCTTTTGTATGATATTTCACTACTGAAACAATT
GTTATAAAATGATGAAAATTTTAAAAATCATTACTTTTGCGCATCAAAGT
CAGAATTCTTTTTTTTTGTTTTAGTTGGTTTAGCAGATTCCCAGTAATTG
CTAACACGTGACAGTCTGTGTGAATCCAG
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protein sequence of SMED30025868-orf-1

>SMED30025868-orf-1 ID=SMED30025868-orf-1|Name=SMED30025868-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=278bp
MNNENSEKYCDYYQRPGHRSSKYHAQIECWNCGKLGHTATRCRVPKISFQ
CWQENHLPAAYRTRRNHDQNNNTKTPESKSTEMKNEINMPARMCNYLAVD
QPHTKINQQSEINVLQGTSRKQQIKCDPIKHQQDWNTLKITEGLEAEKRY
SEIGTFQARIEEERLRRRKEELLKADIIKLTTNDSQVEKINEMWEKRING
VLRINMMRAITKKEPSVQRIPQIKIESEIIERMENVNLNNEDHNEPAMGS
DVNRNIETRNQAYMNYMRYMIGYVAGY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0002032epidermal cell
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: molecular function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0005198structural molecule activity
GO:0046872metal ion binding
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0019012virion
GO:0019013viral nucleocapsid
GO:0019028viral capsid
GO:0020002host cell plasma membrane
GO:0030430host cell cytoplasm
GO:0033644host cell membrane
GO:0042025host cell nucleus
Vocabulary: biological process
TermDefinition
GO:0016032viral process
GO:0019076viral release from host cell
GO:0039702viral budding via host ESCRT complex
GO:0046755viral budding