SMED30025598

Overview
NameSMED30025598
Smed IDSMED30025598
Length (bp)1819
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30025598 (SMED30025598) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30025598 (SMED30025598) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30025598 (SMED30025598) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30025598 (SMED30025598) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30025598

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
cephalic gangliaSMED30025598SMESG000050315.1 dd_Smed_v4_3258_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30025598SMESG000050315.1 dd_Smed_v4_3258_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30025598SMESG000050315.1 dd_Smed_v6_3258_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30025598 vs. Planmine SMEST
Match: SMESG000050315.1 (SMESG000050315.1)

HSP 1 Score: 1004.2 bits (2595), Expect = 0.000e+0
Identity = 519/520 (99.81%), Postives = 520/520 (100.00%), Query Frame = 2 
Query:   95 MKFFYEIQLTSIIFINVIYANYTYQDMEGNLIREGSFNFSIFVKQFSGLVLYAIDSFNNLLIEIEKDTVFIKLNDTISLANSQELCGCSSCKHIYATFILKTRDNILTIKCNGYTSTLAVGKIKKKANQFFGYPIPNGYKSNKTFLWMGNIGLFKGLNDMIYFPLKGQLIGCLDNFFINGKLIQFKSYGSQFSFTCPKGYNQTICNGNHCSQSTVFYDMNDCSISSLNGRYCSTNLRSLNTEHSSIKLNHKLSLIRLEWMTNDDLADPCLMEMKLKNGNIILFHLDKTQRFKMIINNKQAKLFHTTQMKTLPINSTNILAANFTGTEILIKLYSEENINSFVLPLVDEVQLVNFGKSSMKGYCSDFSGLMNFNFTEYPTKDITKQGKRGQSLTETGTIFENSLKHSATTAPSTSFHKXXXXXXXXXXXHKLNDFEMDTVKXXXXXXXXXXXXXXXMVTFYGIIRKEMRSHFKKINSLPRVKNNARDLPLPDVSIPLRNVYEFEEETSKELRNSGEYEELY 1654
            MKFFYEIQLTSIIFINVIYANYTYQDMEGNLIREGSFNFSIFVKQFSGLVLYAIDSFNNLLIEIEKDTVFIKLNDTISLANSQELCGCSSCKHIYATFILKTRDNILTIKCNGYTSTLAVGKIKKKANQFFGYPIPNGYKSNKTFLWMGNIGLFKGLNDMIYFPLKGQLIGCLDNFFINGKLIQFKSYGSQFSFTCPKGYNQTICNGNHCSQSTVFYDMNDCSISSLNGRYCSTNLRSLNTEHSSIKLNHKLSLIRLEWMTNDDLADPCLMEMKLKNGNIILFHLDKTQRFKMIINNKQAKLFHTTQMKTLPINSTNILAANFTGTEILIKLYSEENINSFVLPLVDEVQLVNFGKSSMKGYC+DFSGLMNFNFTEYPTKDITKQGKRGQSLTETGTIFENSLKHSATTAPSTSFHKIINNINNNISNHKLNDFEMDTVKIAVIAGIILIVLLLIMVTFYGIIRKEMRSHFKKINSLPRVKNNARDLPLPDVSIPLRNVYEFEEETSKELRNSGEYEELY
Sbjct:    1 MKFFYEIQLTSIIFINVIYANYTYQDMEGNLIREGSFNFSIFVKQFSGLVLYAIDSFNNLLIEIEKDTVFIKLNDTISLANSQELCGCSSCKHIYATFILKTRDNILTIKCNGYTSTLAVGKIKKKANQFFGYPIPNGYKSNKTFLWMGNIGLFKGLNDMIYFPLKGQLIGCLDNFFINGKLIQFKSYGSQFSFTCPKGYNQTICNGNHCSQSTVFYDMNDCSISSLNGRYCSTNLRSLNTEHSSIKLNHKLSLIRLEWMTNDDLADPCLMEMKLKNGNIILFHLDKTQRFKMIINNKQAKLFHTTQMKTLPINSTNILAANFTGTEILIKLYSEENINSFVLPLVDEVQLVNFGKSSMKGYCNDFSGLMNFNFTEYPTKDITKQGKRGQSLTETGTIFENSLKHSATTAPSTSFHKIINNINNNISNHKLNDFEMDTVKIAVIAGIILIVLLLIMVTFYGIIRKEMRSHFKKINSLPRVKNNARDLPLPDVSIPLRNVYEFEEETSKELRNSGEYEELY 520
[Close]
BLAST of SMED30025598 vs. Planmine SMEST
Match: SMESG000050299.1 (SMESG000050299.1)

HSP 1 Score: 266.159 bits (679), Expect = 1.921e-81
Identity = 187/531 (35.22%), Postives = 281/531 (52.92%), Query Frame = 2 
Query:  119 LTSIIFINVIY--ANYTYQDMEGNLIREGSFNFSIFVKQFSGLVLYAIDSFNNLLIEIEKD----TVFIKLNDTISLANSQELCGCSSCKHIYATFILKTRDNILTIKCNGYTSTLAVGKIKKK---ANQFFGYPIPNGYKSNK--TFLWMGNIGLFKGLNDMIYFPLKGQLIGCLDNFFINGKLIQFKSYGSQFSFTCPKGYNQTICNGNHCSQSTVFYDMNDCSISSLNGRYCSTNLR--SLNTEHSSIKLNHKLSLIRLEWMTNDDLADPCLMEMKLKNGNIILFHLDKTQRFKMIINNKQAKLFHTTQMKTLPINSTNILAANFTGTEILIKLYSEENINSFVLPLVDEVQLVNFGKSSMKGYCSDFSGLMNFNFTEYPTKDITKQGKRGQSLTETGTIFENSLKHSATTAPSTSFHKXXXXXXXXXXXHKLNDFEMDTVKXXXXXXXXXXXXXXXMVTFYGIIRKEMRSHFKKIN------SLPRVKNNARDLPLPDVSIPLRNVYEFE-EETSKELRNSGEYEEL 1651
              S+IF   I+   NY + +++G+LI + + NFS+FVK F G+V Y ID  N +LIE+E++     +  K N+ +    S+ LCGC  C  +Y TFIL+   + + +KCN  T TL V + K K    +QF  YP+PN Y   K  T+++MGNIG +KG N M Y PL  QLIGCLD F+ NGKLI+  S  ++F   C   Y +T+ + N  ++ TV YD+ DCSISSLN RYC  NL   +L T ++ +K   K   IRL+W+ +    + CLME+ L +G+ I+F+++  Q   +    K      +  ++TL  NST  + ANFT T+ +++L S+E+I++F+  L +    +N G S  +  C  F G M+F   +Y       +     SL  T  +    L        ST        +       K ++ ++ +  I  I   + +V + +++ FY IIRKEMRSH +KI+        P    N R+        P  NVYE+E E      R+SG YE L
Sbjct:    8 FVSVIFRLTIFLSTNYIHLELDGDLISQETTNFSLFVKHFKGIVFYGIDRSNKVLIELEEEKDEKRILFKFNNILINEKSRNLCGCPKCSDVYMTFILQLDRSQIAVKCNNQTQTLQVDRSKSKILKPDQFDNYPVPNMYNREKKVTYIFMGNIGPYKGPNYMEYLPLYNQLIGCLDKFYFNGKLIRVTSNSTKFKSFCLTEYIETVHSENFTTKFTVSYDIPDCSISSLNTRYCIRNLSIFNLTTSNTPLKFAGKHFFIRLDWIVSIRYQNLCLMEIFLNDGSAIIFYVENAQSLVVQKVYKNGTFSLSKILETLDTNSTYTMIANFTETKFIVRLSSKEDISTFIQQLNNPPVSINIGISRTQSICKTFEGFMDF---QYKILYSPNKMSSTPSLKPTTALSSRGLDKIKENITST--------VQYTTIVFKKDEIKITSANIIFITISVFLVFIFLLLLFYIIIRKEMRSHIRKISFGTMSAVDPSQSENIRN--------PRPNVYEYEFENVYVSSRDSGGYEIL 519
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BLAST of SMED30025598 vs. Planmine SMEST
Match: SMESG000050303.1 (SMESG000050303.1)

HSP 1 Score: 204.527 bits (519), Expect = 4.688e-59
Identity = 117/340 (34.41%), Postives = 181/340 (53.24%), Query Frame = 2 
Query:  215 IFVKQFSGLVLYAIDSFNNLLIEIEKD---TVFIKLNDTISLA-NSQELCGCSSCKHIYATFILKTRDNILTIKCNGYTSTLAVGKIKKKANQFFGYPIPNGYKS--NKTFLWMGNIGLFKGLNDMIYFPLKGQLIGCLDNFFINGKLIQFKSYGSQFSFTCPKGYNQTICNGNHCSQSTVFYDMNDCSISSLNGRYCSTNLRSL--NTEHSSIKLNHKLSLIRLEWMTNDDLADPCLMEMKLKNGNIILFHLDKTQRFKMIINNKQAKLFHTTQMKTLPINSTNILAANFTGTEILIKLYSEENINSFVLPLVDEVQLVNFGKSSMKGYCSDFSGLMNF 1210
            +F+K  +G+VLYA+D  + +LIE+EK    T  +  N+  S+  N   +CGC  C +IY  + ++      ++ C   T  L   + ++ AN+   YP+P  Y +  N+TF+ +GNIG F+G   ++Y PL+ QL+GCL   +ING  I F S GS F+ +C   Y +TIC   +C++S+V Y + DCSIS LN RYC+++L     N  H    LN  L   RL+W+ +      CL+E +++NG  I F+      +   I+N +    H    K L   S   +   FTG  ++IKL S E+I ++  P+  E   +  G      YC  F G +NF
Sbjct:    1 MFMKNLNGVVLYAVDHSDRILIELEKVNGVTEMVYTNNKHSIRRNIHSICGCLECSYIYMEWRIELIKRRPSVTCGNVTQDLITVESRENANKILAYPLPKNYDTIRNQTFIMIGNIGPFEGNTGIVYNPLRNQLVGCLYKLYINGSRILFNSKGSIFNSSCFTDYTETICGPRYCNESSVTYKITDCSISVLNRRYCTSDLHQFFGNQSH---YLNGNLQFARLDWLIDVLEGSSCLIEFEMENGYFIAFYTSYLNLYVDFIHNSRV---HYHIPKLLHAKSIETMVVEFTGKNVIIKLSSGEDIKTYSYPIASEPIFIRIGSFFKTKYCKTFQGRINF 334
[Close]
BLAST of SMED30025598 vs. Planmine SMEST
Match: SMESG000050309.1 (SMESG000050309.1)

HSP 1 Score: 204.912 bits (520), Expect = 5.197e-59
Identity = 123/367 (33.51%), Postives = 194/367 (52.86%), Query Frame = 2 
Query:  131 IFINVIYANYTYQDMEGNLIREGSFNFSIFVKQFSGLVLYAIDSFNNLLIEIEK-----DTVFIKLNDTISLANSQELCGCSSCKHIYATFILKTRDNILTIKCNGYTSTLAVGK--IKKKANQFFGYPIPNGYKSNKTFLWMGNIGLFKGLNDMIYFPLKGQLIGCLDNFFINGKLIQFKSYGSQFSFTCPKGYNQTICNGNHCSQSTVFYDMNDCSISSLNGRYCSTNLRSLNTEHSSIKLNHKLSLIRLEWMTNDDLADPCLMEMKLKNGNIILFHLDKTQRFKMIINNKQAKLFHTTQMKTLPINSTNILAANFTGTEILIKLYSEENINSFVLPLVDEVQLVNFGKSSMKGYCSDFSGLMNF 1210
            I IN   A+Y YQ++  +L      NFS+F+K  +G+VLY +D  + +LIE+EK     + VF     +I   N   +CGC +C +IY  + ++     L+I C  +  TL + +      +     YP    Y  NKT + +GNIG F    +MIY PLK QL+GCL   ++N   I F S GS F+ +CP  Y +TIC  N+C+QS + Y +NDCSIS LN +YC+T+L+  +     + +   L + R++W  N  +   CL++ K+K+G+ I+F++     +   I N         ++K+L  NS   +   F   +I+I+L S E++ + +  +  E   +  G SS    C  F G MNF
Sbjct:    5 IKINENSASYIYQEINQSLASVKQINFSMFMKNLNGVVLYGVDHSDRILIELEKVNGVTEMVFTNNKHSIR-RNIHSICGCWNCYNIYMEWRIELAIKRLSITCEDFIQTLNISQSNTTSLSESISNYPPLRKY-LNKTLIMIGNIGPFVDYTEMIYLPLKNQLVGCLHQLYVNENQILFNSNGSLFNSSCPSEYKETICGPNYCNQSIITYKINDCSISQLNRKYCATDLKQFHEREMRL-IEESLIIARIDWEINPLVRFQCLLDFKMKDGSFIIFYIIYPHFYMRSIYNTTCS--DIQKLKSLDGNSIETMVLKFLDKDIIIQLSSGEDVQTHIQAIASEPTSIRVGYSSKLKECKFFKGRMNF 366
[Close]
BLAST of SMED30025598 vs. Planmine SMEST
Match: SMESG000050309.1 (SMESG000050309.1)

HSP 1 Score: 204.912 bits (520), Expect = 6.728e-59
Identity = 120/360 (33.33%), Postives = 191/360 (53.06%), Query Frame = 2 
Query:  152 ANYTYQDMEGNLIREGSFNFSIFVKQFSGLVLYAIDSFNNLLIEIEK-----DTVFIKLNDTISLANSQELCGCSSCKHIYATFILKTRDNILTIKCNGYTSTLAVGK--IKKKANQFFGYPIPNGYKSNKTFLWMGNIGLFKGLNDMIYFPLKGQLIGCLDNFFINGKLIQFKSYGSQFSFTCPKGYNQTICNGNHCSQSTVFYDMNDCSISSLNGRYCSTNLRSLNTEHSSIKLNHKLSLIRLEWMTNDDLADPCLMEMKLKNGNIILFHLDKTQRFKMIINNKQAKLFHTTQMKTLPINSTNILAANFTGTEILIKLYSEENINSFVLPLVDEVQLVNFGKSSMKGYCSDFSGLMNF 1210
            A+Y YQ++  +L      NFS+F+K  +G+VLY +D  + +LIE+EK     + VF     +I   N   +CGC +C +IY  + ++     L+I C  +  TL + +      +     YP    Y  NKT + +GNIG F    +MIY PLK QL+GCL   ++N   I F S GS F+ +CP  Y +TIC  N+C+QS + Y +NDCSIS LN +YC+T+L+  +     + +   L + R++W  N  +   CL++ K+K+G+ I+F++     +   I N         ++K+L  NS   +   F   +I+I+L S E++ + +  +  E   +  G SS    C  F G MNF
Sbjct:   23 ASYIYQEINQSLASVKQINFSMFMKNLNGVVLYGVDHSDRILIELEKVNGVTEMVFTNNKHSIR-RNIHSICGCWNCYNIYMEWRIELAIKRLSITCEDFIQTLNISQSNTTSLSESISNYPPLRKY-LNKTLIMIGNIGPFVDYTEMIYLPLKNQLVGCLHQLYVNENQILFNSNGSLFNSSCPSEYKETICGPNYCNQSIITYKINDCSISQLNRKYCATDLKQFHEREMRL-IEESLIIARIDWEINPLVRFQCLLDFKMKDGSFIIFYIIYPHFYMRSIYNTTCS--DIQKLKSLDGNSIETMVLKFLDKDIIIQLSSGEDVQTHIQAIASEPTSIRVGYSSKLKECKFFKGRMNF 377
The following BLAST results are available for this feature:
BLAST of SMED30025598 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025598 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025598 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025598 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025598 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025598 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025598 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025598 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025598 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025598 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025598 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025598 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025598 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025598 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000050315.10.000e+099.81SMESG000050315.1[more]
SMESG000050299.11.921e-8135.22SMESG000050299.1[more]
SMESG000050303.14.688e-5934.41SMESG000050303.1[more]
SMESG000050309.15.197e-5933.51SMESG000050309.1[more]
SMESG000050309.16.728e-5933.33SMESG000050309.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30025598 ID=SMED30025598|Name=SMED30025598|organism=Schmidtea mediterranea sexual|type=transcript|length=1819bp
ATTATTACATCTTCATCCGTAAACTTGGTTATTACATTCTGTCATATTCC
ATTACGGTATAAATTCGCAGTTGCATTTTGACACGACAAATCAAATGAAA
TTCTTTTATGAAATTCAACTAACATCTATAATATTTATTAATGTTATATA
TGCGAATTATACTTATCAAGATATGGAAGGAAACTTAATCAGAGAAGGAT
CATTCAACTTTTCCATATTTGTAAAGCAGTTCTCCGGTCTTGTGCTCTAT
GCCATAGATTCATTCAACAACCTTTTGATCGAAATTGAAAAGGATACAGT
TTTCATCAAGCTCAACGATACGATAAGCCTTGCAAACAGTCAGGAATTAT
GTGGATGTTCCTCATGCAAGCATATTTATGCGACATTCATTTTGAAAACA
AGAGACAATATTTTGACAATAAAATGCAATGGTTACACCAGTACTCTCGC
AGTAGGTAAAATTAAAAAAAAAGCAAACCAATTTTTCGGCTACCCGATTC
CAAATGGTTATAAAAGTAATAAAACTTTCTTATGGATGGGCAATATTGGA
CTTTTTAAAGGTCTTAACGACATGATATACTTCCCTCTGAAAGGCCAATT
AATTGGTTGCCTTGATAATTTTTTTATTAATGGGAAGTTGATACAATTCA
AATCCTACGGATCACAATTTAGTTTCACTTGCCCGAAGGGTTACAATCAA
ACAATTTGCAACGGAAACCACTGCAGTCAATCAACCGTATTTTACGATAT
GAACGATTGCTCAATTTCCAGTTTAAACGGGAGATATTGTAGCACTAATC
TACGTTCTTTAAATACAGAACATTCATCAATAAAATTGAACCATAAATTA
TCACTGATCAGATTGGAATGGATGACAAATGATGATCTCGCTGATCCCTG
CTTGATGGAAATGAAATTAAAGAATGGTAATATTATTCTTTTCCATCTCG
ACAAAACTCAGCGTTTTAAAATGATTATAAATAATAAGCAAGCAAAACTT
TTCCACACAACACAGATGAAGACCTTACCAATAAATTCCACAAACATTTT
GGCTGCAAATTTTACCGGAACAGAAATCCTTATTAAACTATATAGCGAAG
AAAACATTAATAGTTTTGTCCTGCCATTGGTAGATGAAGTTCAACTTGTC
AATTTTGGAAAGTCTTCGATGAAAGGTTATTGCAGCGACTTCAGTGGACT
AATGAATTTCAATTTCACTGAATATCCTACGAAAGATATAACAAAACAAG
GCAAAAGAGGTCAGAGTTTGACAGAAACGGGAACCATTTTCGAAAATTCC
TTGAAGCATTCAGCGACTACTGCTCCTTCAACCAGTTTTCATAAAATCAT
CAACAATATAAATAACAACATCTCCAACCACAAACTTAATGATTTTGAAA
TGGATACGGTTAAAATTGCTGTAATAGCGGGAATAATACTGATTGTCTTG
CTGCTTATAATGGTTACATTTTATGGAATTATTAGAAAAGAAATGAGGTC
ACATTTTAAAAAAATAAATTCTTTACCAAGAGTGAAGAATAACGCCAGAG
ATCTACCACTTCCAGATGTGTCTATACCACTTCGAAATGTATATGAATTT
GAGGAGGAAACTTCTAAAGAACTTCGAAATAGTGGAGAATATGAGGAACT
TTACTAATAAAAAAAGACATTTTTATTTTAATTTTGGGTTAATATTATCG
GATGTCTTGCATTAATTTATTTTCAATAATTCACATTTGATGCATTCTTT
TATCTATGATATTCAGAGGAAACCTTTATCTACTTTGATTTAATTAAATA
TAAAATTGTTAAAACGAAA
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protein sequence of SMED30025598-orf-1

>SMED30025598-orf-1 ID=SMED30025598-orf-1|Name=SMED30025598-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=521bp
MKFFYEIQLTSIIFINVIYANYTYQDMEGNLIREGSFNFSIFVKQFSGLV
LYAIDSFNNLLIEIEKDTVFIKLNDTISLANSQELCGCSSCKHIYATFIL
KTRDNILTIKCNGYTSTLAVGKIKKKANQFFGYPIPNGYKSNKTFLWMGN
IGLFKGLNDMIYFPLKGQLIGCLDNFFINGKLIQFKSYGSQFSFTCPKGY
NQTICNGNHCSQSTVFYDMNDCSISSLNGRYCSTNLRSLNTEHSSIKLNH
KLSLIRLEWMTNDDLADPCLMEMKLKNGNIILFHLDKTQRFKMIINNKQA
KLFHTTQMKTLPINSTNILAANFTGTEILIKLYSEENINSFVLPLVDEVQ
LVNFGKSSMKGYCSDFSGLMNFNFTEYPTKDITKQGKRGQSLTETGTIFE
NSLKHSATTAPSTSFHKIINNINNNISNHKLNDFEMDTVKIAVIAGIILI
VLLLIMVTFYGIIRKEMRSHFKKINSLPRVKNNARDLPLPDVSIPLRNVY
EFEEETSKELRNSGEYEELY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 441..463