DNA-binding protein Ikaros
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30025549 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of DNA-binding protein Ikaros vs. Ensembl Human
Match: SPATA48 (spermatogenesis associated 48 [Source:HGNC Symbol;Acc:HGNC:22564]) HSP 1 Score: 72.4034 bits (176), Expect = 4.184e-13 Identity = 50/143 (34.97%), Postives = 76/143 (53.15%), Query Frame = 1 Query: 736 LYTSTTQKAYEDIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKCYPSVDSWRKNVDLESFEAAQLRPDHFLMK-RPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTGKI 1161 Y S+TQKAYED+P+D L P+ +T+E++ DPI ++ K Y V + + V E ++ Q R FL +P +F S + R IP Y+G + + N +D+DNP + D L R S P + + GYTGK+ Sbjct: 236 FYKSSTQKAYEDVPWDKMLPPKLVPEETTLEKTADPISQCFTL-KRYKGVPAITQMVG-ELWDRFQTR--SFLAPVKPINFVSSSSRSKYIPLYTGHVQSTNADDVDNP-LGDIASLAKQRYSKPLYTNTSRAANIPGYTGKV 373
BLAST of DNA-binding protein Ikaros vs. Ensembl Zebrafish
Match: SPATA48 (chromosome 13 C7orf72 homolog [Source:NCBI gene;Acc:101884205]) HSP 1 Score: 89.3521 bits (220), Expect = 6.431e-19 Identity = 71/214 (33.18%), Postives = 108/214 (50.47%), Query Frame = 1 Query: 529 PTALTY----HNKIKTVDACRASLRAKEKRKITNALLAQIDSRKKTFISNAFPEFTPKIGPNATEDELKAIKFLYTSTTQKAYEDIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKCYPSVDSWRKNVDLESFEAAQLRPDHFLMKRPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTGK 1158 P+AL Y H + + A+L+AK + TNA + S+ I NA P+ + AT A +++YTS TQ+ YED+ +DS L PR P+S++E+ DP+ + + + + W+ + QLR F K+P F S P+ IP Y G +G+ N ++++ P +DF PLTVLRS VP + GYTGK Sbjct: 149 PSALIYDNSEHKRWNSRMRPEAALKAKLE-GWTNAQSIKQPSQDSHEI-NADPDPSVLFDSKAT----AAQQYIYTSATQRGYEDVAWDSKLPPRHEPPISSLEKMADPVSQCFVLKRYHSRPELWQ--AIGSHWSKHQLR-GTFNPKKPISFTSSCPKSGHIPLYCGTVGSENMDNVNIPE-EDFTPLTVLRSKVPPHTLTSYRTTIPGYTGK 352
BLAST of DNA-binding protein Ikaros vs. Ensembl Xenopus
Match: SPATA48 (spermatogenesis associated 48 [Source:NCBI gene;Acc:100491044]) HSP 1 Score: 90.5077 bits (223), Expect = 1.508e-19 Identity = 67/211 (31.75%), Postives = 106/211 (50.24%), Query Frame = 1 Query: 532 TALTYHNKIKTVDACRASLRAK-EKRKITNALLAQIDSRKKTFISNAFPEFTPKIGPNATEDELKAIKFLYTSTTQKAYEDIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKCYPSVDSWRKNVDLESFEAAQLRPDHFLMKRPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTGKI 1161 T+ +++ ++ A RA LR KR S +TF NA + + + N + E A KF++TS+TQ AYE++P+DS L + P S ++ A+++ K + W+ N L ++ Q R + RP+ F S PR QIP Y+GC G+ N EDIDNP ++ P T +R+ P + +P GYTG++ Sbjct: 64 TSTCWNSVARSEAALRAILRGSASKRTPPQKAHGPSSSLSQTFAFNAVKD-SDDVS-NESLREAMARKFMFTSSTQSAYEEVPWDSKLPAKLSPPESAVKMKSRSASASFTPMKSEFHPEPWQVNGRL--WDRFQTR-RTYTGTRPNTFMSRFPRMDQIPNYTGCTGSRNSEDIDNPSA-EYTPFTKVRTQQPHYYKSAYSPNIPGYTGRV 268
BLAST of DNA-binding protein Ikaros vs. Ensembl Mouse
Match: Spata48 (spermatogenesis associated 48 [Source:MGI Symbol;Acc:MGI:1921112]) HSP 1 Score: 60.077 bits (144), Expect = 2.705e-9 Identity = 40/144 (27.78%), Postives = 73/144 (50.69%), Query Frame = 1 Query: 736 LYTSTTQKAYEDIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKC--YPSVDSWRKNVDLESFEAAQLRPDHFLMKRPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTGKI 1161 Y S+TQKAYED+P+D L P+ +T+E++ D I +S + P++ + + F+ +P +F SP+ R IP Y+G + + + +++DNP+ D + + R S ++ + + GYTGK+ Sbjct: 243 FYKSSTQKAYEDVPWDKMLPPKLDPEETTVEKAADHISQCFSLKRYERLPAITQMVGGL-WDRFQTRLFS----APAKPINFVSPSTRSKYIPLYTGHVQSTDADNVDNPY-GDIKSVASPRHSKLQYTNSSRSANIPGYTGKV 380
BLAST of DNA-binding protein Ikaros vs. UniProt/SwissProt
Match: sp|A4D263|SPT48_HUMAN (Spermatogenesis-associated protein 48 OS=Homo sapiens OX=9606 GN=SPATA48 PE=4 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.009e-12 Identity = 50/143 (34.97%), Postives = 76/143 (53.15%), Query Frame = 1 Query: 736 LYTSTTQKAYEDIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKCYPSVDSWRKNVDLESFEAAQLRPDHFLMK-RPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTGKI 1161 Y S+TQKAYED+P+D L P+ +T+E++ DPI ++ K Y V + + V E ++ Q R FL +P +F S + R IP Y+G + + N +D+DNP + D L R S P + + GYTGK+ Sbjct: 236 FYKSSTQKAYEDVPWDKMLPPKLVPEETTLEKTADPISQCFTL-KRYKGVPAITQMVG-ELWDRFQTR--SFLAPVKPINFVSSSSRSKYIPLYTGHVQSTNADDVDNP-LGDIASLAKQRYSKPLYTNTSRAANIPGYTGKV 373
BLAST of DNA-binding protein Ikaros vs. UniProt/SwissProt
Match: sp|Q5NC83|SPT48_MOUSE (Spermatogenesis-associated protein 48 OS=Mus musculus OX=10090 GN=Spata48 PE=2 SV=2) HSP 1 Score: 60.077 bits (144), Expect = 2.013e-8 Identity = 40/144 (27.78%), Postives = 73/144 (50.69%), Query Frame = 1 Query: 736 LYTSTTQKAYEDIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKC--YPSVDSWRKNVDLESFEAAQLRPDHFLMKRPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTGKI 1161 Y S+TQKAYED+P+D L P+ +T+E++ D I +S + P++ + + F+ +P +F SP+ R IP Y+G + + + +++DNP+ D + + R S ++ + + GYTGK+ Sbjct: 239 FYKSSTQKAYEDVPWDKMLPPKLDPEETTVEKAADHISQCFSLKRYERLPAITQMVGGL-WDRFQTRLFS----APAKPINFVSPSTRSKYIPLYTGHVQSTDADNVDNPY-GDIKSVASPRHSKLQYTNSSRSANIPGYTGKV 376
BLAST of DNA-binding protein Ikaros vs. TrEMBL
Match: A0A267GR96 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig002996g1 PE=4 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 1.025e-40 Identity = 113/348 (32.47%), Postives = 171/348 (49.14%), Query Frame = 1 Query: 139 LFY-MDENCGPNDIEAYKIQEMKRKNRLNLGRNYYNKSFINKVNEEDFYKVNHLKENRLPQPYRDYENFVNPVSHFLTPGYNKANHRGI--NPVKIASFNEETPQNTDPKEINSNRINCPNVFEELNRQSEFDPTALTYHNKIKTVDACRASLRAKEKRKITNALLAQIDSRKKTFISNAFPEFTPKIGPNATEDELKAIKFLYTSTTQKAYE-----DIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKCYPSVDSWRKNVDLESFEAAQLRPDHFLMKRPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTGK 1158 +FY D N G NDI ++ + +R +R R + K + +F K R PYRDYE+ V+P+S + G A RG+ P+ + + N+ PQ P+ I+S R P + E++R SE +P L H K+ RA + T+ +S K T + + PK P+ +E + A K++YTSTTQ AYE D+P Y +R+ P T+E DP+ + K P +W +++ QLRPD++ +RP+ +CS R +PTYSGC+GA N ++IDNP+ + P TVLR+ PKF GYTG+ Sbjct: 24 VFYRTDANAGLNDIRRFQQERFRRIHRFPPNRGSADAKSFGKESSPEFKKFEDSGLQRCAAPYRDYESIVDPISGSI--GAGAAFVRGLPGRPIGVYAHND-GPQYNRPQTIHSIRKGMPGAYPEIDRASETEPPGLPAHEKLVGPGYTRAV-----QGGWTSGTDQTPESAKLTLLCH-----LPKARPDMSERDRLAYKYIYTSTTQSAYEAVPAEDMPRGGY---KRFPPTHTLEAHADPVSLTNNSKKTLPPAQTWCSQERGLTWDFKQLRPDYYNRQRPYTYCSVARRTDHLPTYSGCVGADNPQEIDNPY-EPLRPYTVLRNPQPKFGVSGAPTDIPGYTGR 354
BLAST of DNA-binding protein Ikaros vs. TrEMBL
Match: A0A267EMV2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig002565g1 PE=4 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.359e-40 Identity = 113/348 (32.47%), Postives = 171/348 (49.14%), Query Frame = 1 Query: 139 LFY-MDENCGPNDIEAYKIQEMKRKNRLNLGRNYYNKSFINKVNEEDFYKVNHLKENRLPQPYRDYENFVNPVSHFLTPGYNKANHRGI--NPVKIASFNEETPQNTDPKEINSNRINCPNVFEELNRQSEFDPTALTYHNKIKTVDACRASLRAKEKRKITNALLAQIDSRKKTFISNAFPEFTPKIGPNATEDELKAIKFLYTSTTQKAYE-----DIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKCYPSVDSWRKNVDLESFEAAQLRPDHFLMKRPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTGK 1158 +FY D N G NDI ++ + +R +R R + K + +F K R PYRDYE+ V+P+S + G A RG+ P+ + + N+ PQ P+ I+S R P + E++R SE +P L H K+ RA + T+ +S K T + + PK P+ +E + A K++YTSTTQ AYE D+P Y +R+ P T+E DP+ + K P +W +++ QLRPD++ +RP+ +CS R +PTYSGC+GA N ++IDNP+ + P TVLR+ PKF GYTG+ Sbjct: 24 VFYRTDANAGLNDIRRFQQERFRRIHRFPPYRGSADAKSFGKESSPEFKKFEDSGLQRCAAPYRDYESIVDPISGSI--GAGAAFVRGLPGRPIGVYAHND-GPQYNRPQTIHSIRKGMPGAYPEIDRASETEPPGLPAHQKLVGPGYTRAV-----QGGWTSGTDQTPESAKLTLLCH-----LPKARPDMSERDRLAYKYIYTSTTQSAYEAVPAEDMPRGGY---KRFPPTHTLEAHADPVSLTNNSKKTLPPAQTWCSQERGLTWDFKQLRPDYYNRQRPYTYCSVARRTDHLPTYSGCVGADNPQEIDNPY-EPLRPYTVLRNPQPKFGVSGAPTDIPGYTGR 354
BLAST of DNA-binding protein Ikaros vs. TrEMBL
Match: A0A2T7P8Q7 (Uncharacterized protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_09060 PE=4 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.956e-39 Identity = 107/331 (32.33%), Postives = 166/331 (50.15%), Query Frame = 1 Query: 178 EAYKIQEMKRKNRLNLGRNYYNKSFINKVNEEDFYKVNHLKENRLPQPYRDYENFVNPVSHFLTPGYNKANHRGINPVKIASFNEETPQNTDPKEINSNRINCPNVFEELNRQSEFDPTALTYHNKIKTVDACRASLRAKEKRKITNALLAQIDSRKKT-FISNAFPEFTPKIGPNATEDELK----AIKFLYTSTTQKAYEDIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKCYPSVDSWRKNVDLESFEAAQLRPDHFLMKRPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTG 1155 E KI++MK + L + +SF +++ F N ++ P+R ++N ++PVS F++ G + H G ++ TPQ+ DPKE NS R+N P EL R++ + P T N K D R ++ D RK + A + PK P + E + A+++LY+S+TQ+ YE++P+D+ L P+ WAPV+T+E PD I +S+ + P+ W+ SF+ Q R ++ P FCSP PR HQIP Y GCIGA N E++DN + F P T+ R +P + + P GY G Sbjct: 6 EKRKIRQMKFPD---LRGRHDCESFQKSLDDPSFKVWNDEGDHSAYAPHRCFDNIIDPVSGFVSVGGDVDRHTGHERIRSMVQLNRTPQSADPKEKNSIRVNDPAAPPELRRENTWAPGEPTKWNSRKVSDGW--------IRSQLGGWTSEYDPRKPAPELIRAKSMYIPK--PPSEESKYSRDHLALRYLYSSSTQRGYEEVPWDTMLPPKMWAPVTTLENKPDQISQCFSQRRYEPAAQEWQ--ALGRSFDWFQQRRGYY-KSAPITFCSPCPRAHQIPLYGGCIGAENLEEMDNVQ-ESFHPFTIKRVIIPCPSETSHRPNIPGYKG 319
BLAST of DNA-binding protein Ikaros vs. TrEMBL
Match: A0A210PW04 (Uncharacterized protein C7orf72 OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT19203 PE=4 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 1.503e-38 Identity = 108/348 (31.03%), Postives = 166/348 (47.70%), Query Frame = 1 Query: 142 FYMDENCGPNDIEAYKIQEMKRKNRLNL----GRNYYNKSFINKVNEEDFYKVNHLKENRLPQPYRDYENFVNPVSHFLTPGYNKANHRGINPVKIASFNEETPQNTDPKEINSNRINCPNVFEELNRQSEFDPTALTYHNKIKTVDACRASLRAKEKRKITNALLAQIDSRK------KTFISNAFPEFTPKIGPNATEDELKAIKFLYTSTTQKAYEDIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKCYPSVDSWRKNVDLESFEAAQLRPDHFLMKRPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTG 1155 Y+D N G N ++ +I+ +R + GR + + + + K N + R PYRDY+N V+PVS F++ G + + G + ETPQ P+ NS+R EL R + ++P A + N D R + D R+ K +AF P D L A+K+ Y ++TQK++E++P+D+ LHP++WAPVSTIEE PD I Y+ + P+ W+ S++ Q R ++ +P FCS NPR QIP+Y G IGA N ++IDN + F+P TV R +P+++ P GY G Sbjct: 26 LYVDANAGGNSVQ--QIETHRRARHMKFPTLTGRGDVDSFTTSMKTDIGYKKWNDEGDFRSSAPYRDYDNIVDPVSGFVSAGGDVDRNTGRKKINSLVQLNETPQAVPPQGKNSDRKKEVKAPPELRRSNTYEPGAPSMWNSRSVSDIW--------IRSQLGGWTSDYDPRQPAPEMSKWRSKSAFVPKPPSEQSRDGRDHL-AMKYKYGTSTQKSFEEVPWDNMLHPKQWAPVSTIEERPDMISQNYTLKRYDPAAQEWQSTG--RSWDWFQKRQGYY-KNQPVAFCSSNPRAQQIPSYGGSIGAENLDEIDNAQ-EPFDPYTVKRVLIPRYSETGHRPNIPGYKG 358
BLAST of DNA-binding protein Ikaros vs. TrEMBL
Match: K1Q5G4 (Uncharacterized protein OS=Crassostrea gigas OX=29159 GN=CGI_10006803 PE=4 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 3.374e-35 Identity = 107/353 (30.31%), Postives = 174/353 (49.29%), Query Frame = 1 Query: 133 KCLFYMDENCGPNDIEAYKIQEMKRKNRLNL----GRNYYNKSFINKVNEEDFYKVNHLKENRLPQPYRDYENFVNPVSHFLTPGYN---KANHRGINPVKIASFNEETPQNTDPKEINSNRINCPNVFEELNRQSEFDPTALTYHNKIKTVDACRASLRAKEKRKITNALLAQIDSRKKTFISNAF---PEFTPKIGPNATED--ELKAIKFLYTSTTQKAYEDIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKCYPSVDSWRKNVDLESFEAAQLRPDHFLMKRPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTG 1155 + +D N G N ++ +I+ +R ++ GR + + F + N + R PYRDY+N V+PVS F++ G + H+ I P +A N+ PQ P+ +S+R N EL R + ++P A ++ N KT D S + D RK+ ++ + F PK ++D + A+KF+Y S+TQK+YE++P+D+ L ++WAPVST+E+ PD I Y+ + P+ W+ S++ Q R ++ P +F SP PR IP YSGCIGA N ++ DN + F P T+ R ++P+++ P GY G Sbjct: 23 QSYLQVDTNAGGNTVQ--QIENHRRIRQMKFPTLSGRADVDSFKAFPAKDIGFKRWNDEGDFRANAPYRDYDNIVDPVSGFVSAGGDVDRGTGHKKIRP--LAQLND-VPQCAAPQSKHSDRKNSEKAPPELRRSNTYEPGAPSFWNSRKTSDEWIKSQ--------LGGWTSDYDPRKEAPETSRWRSKSAFVPKPPSEQSKDGRDHLALKFMYGSSTQKSYEEVPWDNMLPSKQWAPVSTLEDRPDMISQTYTLKRYDPAAQEWQGTG--RSWDWFQKRRGYY-KDGPINFSSPCPRTQHIPNYSGCIGADNLDEKDN-QKEPFYPYTIKRVNIPRYSETGHRPNIPGYQG 358
BLAST of DNA-binding protein Ikaros vs. Ensembl Cavefish
Match: SPATA48 (spermatogenesis associated 48 [Source:NCBI gene;Acc:103044575]) HSP 1 Score: 97.4413 bits (241), Expect = 7.234e-22 Identity = 61/170 (35.88%), Postives = 93/170 (54.71%), Query Frame = 1 Query: 724 AIKFLYTSTTQKAYEDIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKCYPSVDSWRKNVDLESFEAAQLRPDHFLMKRPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTGK------------IPI--LPGNMLPP 1191 A ++ YTS Q+ YED+ +DS L PR AP+ST+E+ DP+ ++ + + W+ + QLR + K+P F SP+P+ QIP Y G +G+ N +++D+P KDF+PLTVLR+ +P + P GYTGK +P +PG+ LPP Sbjct: 194 ARRYSYTSAAQRGYEDVDWDSKLPPRFKAPLSTLEKMADPVNQHFTLKRYNSRPELWQAIGTY--WNKHQLR-ATYNAKKPVSFTSPHPKSGQIPLYCGVVGSENMDNVDDPD-KDFKPLTVLRTILPPYTPTAHRPTIPGYTGKALHARPHTSDITLPSRPIPGSSLPP 359
BLAST of DNA-binding protein Ikaros vs. Ensembl Cavefish
Match: SPATA48 (spermatogenesis associated 48 [Source:NCBI gene;Acc:103044575]) HSP 1 Score: 86.6557 bits (213), Expect = 3.119e-18 Identity = 49/136 (36.03%), Postives = 80/136 (58.82%), Query Frame = 1 Query: 724 AIKFLYTSTTQKAYEDIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKCYPSVDSWRKNVDLESFEAAQLRPDHFLMKRPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTET 1131 A ++ YTS Q+ YED+ +DS L PR AP+ST+E+ DP+ ++ + + W+ + QLR + K+P F SP+P+ QIP Y G +G+ N +++D+P KDF+PLTVLR+ +P + ++ Sbjct: 194 ARRYSYTSAAQRGYEDVDWDSKLPPRFKAPLSTLEKMADPVNQHFTLKRYNSRPELWQAIGTY--WNKHQLR-ATYNAKKPVSFTSPHPKSGQIPLYCGVVGSENMDNVDDPD-KDFKPLTVLRTILPPYTPTAQS 325
BLAST of DNA-binding protein Ikaros vs. Planmine SMEST
Match: SMESG000052707.1 (SMESG000052707.1) HSP 1 Score: 771.541 bits (1991), Expect = 0.000e+0 Identity = 390/390 (100.00%), Postives = 390/390 (100.00%), Query Frame = 1 Query: 67 MVERIIKXXXXXXXXXXXXXXXKCLFYMDENCGPNDIEAYKIQEMKRKNRLNLGRNYYNKSFINKVNEEDFYKVNHLKENRLPQPYRDYENFVNPVSHFLTPGYNKANHRGINPVKIASFNEETPQNTDPKEINSNRINCPNVFEELNRQSEFDPTALTYHNKIKTVDACRASLRAKEKRKITNALLAQIDSRKKTFISNAFPEFTPKIGPNATEDELKAIKFLYTSTTQKAYEDIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKCYPSVDSWRKNVDLESFEAAQLRPDHFLMKRPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTGKIPILPGNMLPPFNTDPIPRNVLGQPC 1236 MVERIIKDLRLSNLGGRRLRDSKCLFYMDENCGPNDIEAYKIQEMKRKNRLNLGRNYYNKSFINKVNEEDFYKVNHLKENRLPQPYRDYENFVNPVSHFLTPGYNKANHRGINPVKIASFNEETPQNTDPKEINSNRINCPNVFEELNRQSEFDPTALTYHNKIKTVDACRASLRAKEKRKITNALLAQIDSRKKTFISNAFPEFTPKIGPNATEDELKAIKFLYTSTTQKAYEDIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKCYPSVDSWRKNVDLESFEAAQLRPDHFLMKRPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTGKIPILPGNMLPPFNTDPIPRNVLGQPC Sbjct: 1 MVERIIKDLRLSNLGGRRLRDSKCLFYMDENCGPNDIEAYKIQEMKRKNRLNLGRNYYNKSFINKVNEEDFYKVNHLKENRLPQPYRDYENFVNPVSHFLTPGYNKANHRGINPVKIASFNEETPQNTDPKEINSNRINCPNVFEELNRQSEFDPTALTYHNKIKTVDACRASLRAKEKRKITNALLAQIDSRKKTFISNAFPEFTPKIGPNATEDELKAIKFLYTSTTQKAYEDIPFDSYLHPRRWAPVSTIEESPDPIRAAYSKNKCYPSVDSWRKNVDLESFEAAQLRPDHFLMKRPHDFCSPNPRGHQIPTYSGCIGAYNKEDIDNPHVKDFEPLTVLRSSVPKFATCTETPVFVGYTGKIPILPGNMLPPFNTDPIPRNVLGQPC 390 The following BLAST results are available for this feature:
BLAST of DNA-binding protein Ikaros vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of DNA-binding protein Ikaros vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of DNA-binding protein Ikaros vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of DNA-binding protein Ikaros vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of DNA-binding protein Ikaros vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of DNA-binding protein Ikaros vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of DNA-binding protein Ikaros vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 2
BLAST of DNA-binding protein Ikaros vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of DNA-binding protein Ikaros vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of DNA-binding protein Ikaros vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of DNA-binding protein Ikaros vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of DNA-binding protein Ikaros vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of DNA-binding protein Ikaros vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of DNA-binding protein Ikaros vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30025549 ID=SMED30025549|Name=DNA-binding protein Ikaros|organism=Schmidtea mediterranea sexual|type=transcript|length=1328bpback to top protein sequence of SMED30025549-orf-1 >SMED30025549-orf-1 ID=SMED30025549-orf-1|Name=SMED30025549-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=391bp MVERIIKDLRLSNLGGRRLRDSKCLFYMDENCGPNDIEAYKIQEMKRKNRback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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