SMED30025505

Overview
NameSMED30025505
Smed IDSMED30025505
Length (bp)2079
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30025505 (SMED30025505) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30025505 (SMED30025505) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30025505 (SMED30025505) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30025505 (SMED30025505) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30025505

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30025505SMESG000010825.1 Contig2265newmark_estsPMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30025505SMESG000017213.1 Contig2265newmark_estsPMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30025505 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1)

HSP 1 Score: 159.458 bits (402), Expect = 5.465e-65
Identity = 107/264 (40.53%), Postives = 151/264 (57.20%), Query Frame = 3
Query:  900 LNMKRFNSNYLPRILNKNERHDIINNYPCFISLLKKKNSKTKFDHINYKLSLINKSKLNFKIKDCDNLFYRNGNLCFSIKLSEIKKSDA-TKKIITKSTNFQNKNKTIITNLVNTDNYCSKLIKAPLAIKKFLFVFSRKLAETVSIKNDLHKGTVINKTLDNLKFQKQLPYFLVKSDLKYADGDFIMKDLLTSEDADNESFNIGLSNLTRSQLNKLYFDFPEIKEMCFTEGMHKDSDKISSLINHLKLNKEFPKDISFSGCKFI 1688
            L   +FN     R LNK+E+  +  ++P     +K K S  KF ++N +L  I  SK   KI      FYRNGN+C SI  S   K++   KK I K++        I +N++ + N   K   A  AIK+FLFV S KL+ET +I N   +G  IN TL+ LK Q+ LP +L+KS +KY DGDF+M DLL+  D +  +  +  S L+RSQ+  L+  FPE+ E+ F+E    ++DK  +LIN+LK    FP+ ISF G KFI
Sbjct: 4114 LEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKTEPLVKKTILKTS-------IIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISNAKVRGEQINNTLNLLKKQRALPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSES-DCNTDKFKNLINNLKSEHGFPEQISFVGGKFI 4369          

HSP 2 Score: 108.997 bits (271), Expect = 5.465e-65
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 1
Query: 1726 GLFDLFKISKDDIELERLISLPASSNKIVEIIFHLNYLNLKGNVKYFSNITYGTYVLNYFRNVLLLHSIIDSEKCNSLIIDTLEIWGSELTDQIPSTSYFKFSCQEKLIKYEKWLLNG 2079
            GL +  ++   D  L  L S P SS KI++IIFHLNYL LKG +K+ SN +YG YV NY RN L L+SI D E  N+L +D +E W   L   IP  SY   SC+E+L++  +W L+ 
Sbjct: 4393 GLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSS 4510          

HSP 3 Score: 140.198 bits (352), Expect = 2.713e-59
Identity = 100/264 (37.88%), Postives = 141/264 (53.41%), Query Frame = 3
Query:  900 LNMKRFNSNYLPRILNKNERHDIINNYPCFISLLKKKNSKTKFDHINYKLSLINKSKLNFKIKDCDNLFYRNGNLCFSIKLSEIKKSDA-TKKIITKSTNFQNKNKTIITNLVNTDNYCSKLIKAPLAIKKFLFVFSRKLAETVSIKNDLHKGTVINKTLDNLKFQKQLPYFLVKSDLKYADGDFIMKDLLTSEDADNESFNIGLSNLTRSQLNKLYFDFPEIKEMCFTEGMHKDSDKISSLINHLKLNKEFPKDISFSGCKFI 1688
            L   +FN     R LNK+E+  +  ++P     +K K S  KF ++N +L  I  SK   KI      FYRNGN+C SI  S   K +   KK I K++        I +N++ + N   K   A  AIK+FLFV S KL+ET +I N                 Q+ LP +L+KS +KY DGDF+M DLL+  D +  +  +  S L+RSQ+  L+  FPE+ E+ F+E    ++DK  +LIN+LK    FP+ ISF G KFI
Sbjct: 1780 LEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKMEPLVKKTILKTS-------IIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISN---------------AKQRALPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSES-DCNTDKFKNLINNLKSEHGFPEQISFVGGKFI 2020          

HSP 4 Score: 108.997 bits (271), Expect = 2.713e-59
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 1
Query: 1726 GLFDLFKISKDDIELERLISLPASSNKIVEIIFHLNYLNLKGNVKYFSNITYGTYVLNYFRNVLLLHSIIDSEKCNSLIIDTLEIWGSELTDQIPSTSYFKFSCQEKLIKYEKWLLNG 2079
            GL +  ++   D  L  L S P SS KI++IIFHLNYL LKG +K+ SN +YG YV NY RN L L+SI D E  N+L +D +E W   L   IP  SY   SC+E+L++  +W L+ 
Sbjct: 2044 GLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSS 2161          
BLAST of SMED30025505 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1)

HSP 1 Score: 159.458 bits (402), Expect = 5.650e-65
Identity = 107/264 (40.53%), Postives = 151/264 (57.20%), Query Frame = 3
Query:  900 LNMKRFNSNYLPRILNKNERHDIINNYPCFISLLKKKNSKTKFDHINYKLSLINKSKLNFKIKDCDNLFYRNGNLCFSIKLSEIKKSDA-TKKIITKSTNFQNKNKTIITNLVNTDNYCSKLIKAPLAIKKFLFVFSRKLAETVSIKNDLHKGTVINKTLDNLKFQKQLPYFLVKSDLKYADGDFIMKDLLTSEDADNESFNIGLSNLTRSQLNKLYFDFPEIKEMCFTEGMHKDSDKISSLINHLKLNKEFPKDISFSGCKFI 1688
            L   +FN     R LNK+E+  +  ++P     +K K S  KF ++N +L  I  SK   KI      FYRNGN+C SI  S   K++   KK I K++        I +N++ + N   K   A  AIK+FLFV S KL+ET +I N   +G  IN TL+ LK Q+ LP +L+KS +KY DGDF+M DLL+  D +  +  +  S L+RSQ+  L+  FPE+ E+ F+E    ++DK  +LIN+LK    FP+ ISF G KFI
Sbjct: 4085 LEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKTEPLVKKTILKTS-------IIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISNAKVRGEQINNTLNLLKKQRALPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSES-DCNTDKFKNLINNLKSEHGFPEQISFVGGKFI 4340          

HSP 2 Score: 108.997 bits (271), Expect = 5.650e-65
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 1
Query: 1726 GLFDLFKISKDDIELERLISLPASSNKIVEIIFHLNYLNLKGNVKYFSNITYGTYVLNYFRNVLLLHSIIDSEKCNSLIIDTLEIWGSELTDQIPSTSYFKFSCQEKLIKYEKWLLNG 2079
            GL +  ++   D  L  L S P SS KI++IIFHLNYL LKG +K+ SN +YG YV NY RN L L+SI D E  N+L +D +E W   L   IP  SY   SC+E+L++  +W L+ 
Sbjct: 4364 GLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSS 4481          

HSP 3 Score: 140.198 bits (352), Expect = 2.828e-59
Identity = 100/264 (37.88%), Postives = 141/264 (53.41%), Query Frame = 3
Query:  900 LNMKRFNSNYLPRILNKNERHDIINNYPCFISLLKKKNSKTKFDHINYKLSLINKSKLNFKIKDCDNLFYRNGNLCFSIKLSEIKKSDA-TKKIITKSTNFQNKNKTIITNLVNTDNYCSKLIKAPLAIKKFLFVFSRKLAETVSIKNDLHKGTVINKTLDNLKFQKQLPYFLVKSDLKYADGDFIMKDLLTSEDADNESFNIGLSNLTRSQLNKLYFDFPEIKEMCFTEGMHKDSDKISSLINHLKLNKEFPKDISFSGCKFI 1688
            L   +FN     R LNK+E+  +  ++P     +K K S  KF ++N +L  I  SK   KI      FYRNGN+C SI  S   K +   KK I K++        I +N++ + N   K   A  AIK+FLFV S KL+ET +I N                 Q+ LP +L+KS +KY DGDF+M DLL+  D +  +  +  S L+RSQ+  L+  FPE+ E+ F+E    ++DK  +LIN+LK    FP+ ISF G KFI
Sbjct: 1780 LEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKMEPLVKKTILKTS-------IIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISN---------------AKQRALPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSES-DCNTDKFKNLINNLKSEHGFPEQISFVGGKFI 2020          

HSP 4 Score: 108.997 bits (271), Expect = 2.828e-59
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 1
Query: 1726 GLFDLFKISKDDIELERLISLPASSNKIVEIIFHLNYLNLKGNVKYFSNITYGTYVLNYFRNVLLLHSIIDSEKCNSLIIDTLEIWGSELTDQIPSTSYFKFSCQEKLIKYEKWLLNG 2079
            GL +  ++   D  L  L S P SS KI++IIFHLNYL LKG +K+ SN +YG YV NY RN L L+SI D E  N+L +D +E W   L   IP  SY   SC+E+L++  +W L+ 
Sbjct: 2044 GLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSS 2161          
BLAST of SMED30025505 vs. Planmine SMEST
Match: SMESG000021487.1 (SMESG000021487.1)

HSP 1 Score: 154.451 bits (389), Expect = 1.166e-61
Identity = 118/329 (35.87%), Postives = 180/329 (54.71%), Query Frame = 3
Query:  789 VDELFNDTEKVSNAENSPLN-PINTQFENFKVTVT------KDALNMKRFNS---NYLPRILNKNERHDIINNYPCFISLLKKKNSKTKFDHINYKLS--LINKSKLNFKIKDC-DNLFYRNGNLCFSIKLSEIKKSDATKKIITKSTNFQNKNKTIITNLVNTDNYCSKLIKAPLAIKKFLFVFSRKLAETVSIKNDLHKGTVINKTLDNLKFQKQLPYFLVKSDLKYADGDFIMKDLL---TSEDADNESFNIGLSNLTRSQLNKLYFDFPEIKEMCFTEGMHKDSDKISSLINHLKLNKEFPKDISFSGCKFIIKQKSNKIEPDSW 1727
            +D L +++  V+   N+ LN   N   +NF++T         D   ++ F +   N + RIL KNER  +   YP  I+L K+K S  K+  +N  LS      + LN    DC +  FYRN N C S  L+  KKS   K  + K+  +  KNK     +VN     +  I AP+AIKKFLF  S +LAETVSI++D H+G+ INK + ++   +QLP +L+KS++KY DG+F++ DL     S D  ++  +   S L+R+++  LY  +P +KE+CF E      D + SL+  LK+   FP++I + G KF      +K EP+S+
Sbjct:  160 IDNLIDNSNIVNKISNNILNKEFNNGLKNFQITFKNNLIKKTDNFKLQPFENKDFNKVVRILTKNERKTLFIKYPKLINLNKRKESHNKYLELNKILSEYSFQCNPLNL---DCFEYFFYRNQNFCVSFNLNNTKKS--FKPSVLKNNIYLIKNK-----IVNIFPVGASYIPAPMAIKKFLFNVSPELAETVSIRDDKHRGSKINKIISSMIKAQQLPNYLIKSNIKYEDGEFLLLDLTKVKLSSDTTDKLVSSTFSELSRTEMKNLYSSYPSLKEICFVENPSTKHDSVISLVESLKIKNAFPENIFYEGGKFFQSAIKSK-EPNSF 477          

HSP 2 Score: 102.834 bits (255), Expect = 1.166e-61
Identity = 52/118 (44.07%), Postives = 76/118 (64.41%), Query Frame = 1
Query: 1726 GLFDLFKISKDDIELERLISLPASSNKIVEIIFHLNYLNLKGNVKYFSNITYGTYVLNYFRNVLLLHSIIDSEKCNSLIIDTLEIWGSELTDQIPSTSYFKFSCQEKLIKYEKWLLNG 2079
            GLFDL  +SKDD +L+ ++       KIVEIIF+LNYL L G++KY  N TY  YV NY RN  L++S+   E    ++ D  E W +E+  +IP  S++  SCQEK++K ++W ++G
Sbjct:  485 GLFDLESMSKDDADLKSILDKQGCDFKIVEIIFYLNYLGLIGSLKYCQNQTYSDYVSNYIRNCCLINSLCSLEDLALVLDDDFEYWATEIIQKIPHESFYYTSCQEKILKLKQWKISG 602          
BLAST of SMED30025505 vs. Planmine SMEST
Match: SMESG000068945.1 (SMESG000068945.1)

HSP 1 Score: 146.747 bits (369), Expect = 1.691e-50
Identity = 100/120 (83.33%), Postives = 106/120 (88.33%), Query Frame = 3
Query:  501 SMDPEKSFDVCDKKALSNKILPLSAKLMELEEHILRMNSKFDIVLSKLXXXXXXXXXXXXXXXXXXXVDNKDDLNISSNYNLVSENVLNKYIKESSVDELFNDTEKVSNAENSPLNPINT 860
            +MDPEK FD CD +ALSNKILPL +KLMELEEHILR   KFDIVLSKL NSDFNDNNCNLNI NKIN DN +DLNISSNYN+VSENVLNKY KESSVDELFNDTEKVSN+EN PLN INT
Sbjct:  106 AMDPEKLFDECDMQALSNKILPLLSKLMELEEHILR---KFDIVLSKLGNSDFNDNNCNLNIPNKINFDNNEDLNISSNYNIVSENVLNKYNKESSVDELFNDTEKVSNSENGPLNSINT 222          

HSP 2 Score: 73.1738 bits (178), Expect = 1.691e-50
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 1
Query:  337 ENQIIYSQQLLDFISQRSNGHNQLPLSPKSIHXXXXXXXXXXXXTGDNQLPPS 495
            +NQII SQQLLDFISQRSNGHNQLPLS K IH DLSLDLLSKKSTGDNQLPPS
Sbjct:   51 KNQIICSQQLLDFISQRSNGHNQLPLSAKPIHPDLSLDLLSKKSTGDNQLPPS 103          
BLAST of SMED30025505 vs. Planmine SMEST
Match: SMESG000046455.1 (SMESG000046455.1)

HSP 1 Score: 119.013 bits (297), Expect = 1.746e-48
Identity = 101/257 (39.30%), Postives = 147/257 (57.20%), Query Frame = 3
Query:  936 RILNKNERHDIINNYPCFISLLKKKNSKTKFDHINYKLSLINKSKLNFKIKDCDNLFYRNGNLCFSIKLSEIKKSDATKKIITKSTNFQNKNKTIITNLVNTD---NY-CSKLIKAPLAIKKFLFVFSRKLAETVSIKNDLHKGTVINKTLDNLKFQKQLPYFLVKSDLKYADGDFIMKDLLTSEDADNESFNIGLSNLTRSQLNKLYFDFPEIKEMCFTE--GMHKDSDKISSLINHLKLNKEFPKDISFSGCKFI 1688
            R+L+  ER      +P   +LLK K S+ K + +N +L+ I+K      I    N F+RN N+C +I   +   S   K  ITK       N  I T+L+N+    NY  +K I A L+IKKFLFV S KLAET +I N   +   INK +  LK +  LP +LVKS + Y DGDF+M DLL S + + E     ++ L+RSQ+ +L+  FPEI+E+ F E   + ++ +K+ +LIN  K+ + FP+ ISF G KF+
Sbjct:  621 RVLDSKERQQFFKLFPNSFALLKSKESEKKSEVLNIELTKISKIDNPLNIAGFKNFFFRNNNICVTI---DFYNSSKVKSKITK-------NLKIKTSLINSKIVKNYNTNKFIPASLSIKKFLFVLSDKLAETTNISNVTVREEQINKIITLLKIKNSLPDYLVKSQINYKDGDFLMLDLLNSFEIEGE-LGQNITELSRSQIKELFNSFPEIQELFFIEKKSIDENPEKLINLINKFKIEETFPQQISFVGGKFV 866          

HSP 2 Score: 94.3597 bits (233), Expect = 1.746e-48
Identity = 53/104 (50.96%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 1726 GLFDLFKISKDDIELERLISLPASSNKIVEIIFHLNYLNLKGNVKYFSNITYGTYVLNYFRNVLLLHSIIDSEKCNSLIIDTLEIWGSELTDQIPSTSYFKFSC 2037
            GLF LF +S+ D  L  L+  P S  K+V+IIFHLNYLNLKGN    +N TY  YV NY  N LL+HSI+D E C  L +D +E+W  +L + IPS+S +  SC
Sbjct:  890 GLFSLFGLSEYDNILNSLLCQPKSPEKLVDIIFHLNYLNLKGNFDTSTNGTYENYVQNYIVNCLLMHSILDLETCAFLNLDNIELWAPKLIELIPSSSDYSSSC 993          
The following BLAST results are available for this feature:
BLAST of SMED30025505 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025505 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025505 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025505 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025505 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025505 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025505 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025505 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025505 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025505 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025505 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025505 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025505 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025505 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000021486.15.465e-6540.53SMESG000021486.1[more]
SMESG000021486.15.650e-6540.53SMESG000021486.1[more]
SMESG000021487.11.166e-6135.87SMESG000021487.1[more]
SMESG000068945.11.691e-5083.33SMESG000068945.1[more]
SMESG000046455.11.746e-4839.30SMESG000046455.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30025505 ID=SMED30025505|Name=SMED30025505|organism=Schmidtea mediterranea sexual|type=transcript|length=2079bp
CTGCGTGACATAATGGGGGTTGGGTGATAAGTGTGTCTCCTGGTGGTGAC
TGTCCAGTGGTCACTTGGCATAATCGTGAGGTCAGTGGTCAAAGATCAAT
TACTAGGTAGCAATTGAGTGGACAGAGGTTATATATTGTTTAATAATAAC
GTAAGCCAAGGGGGGGGGTTGTATCCAATTTGGTATTATCTCCAAAGATA
ATTATTGGTGTCTATTTTTCTAGTTCTCCTCTCACACAACACGATGACGC
AATCTCTTTCGGTAGTGCAAGCTCAACTTGCATCAGATCAATTGAATAAT
AGTTCATCAGAACTGGTTATTTTCAAAACAATTCTAGAAAATCAGATAAT
TTATTCCCAGCAATTATTGGATTTTATCTCACAAAGATCAAACGGACATA
ATCAATTGCCACTTTCGCCGAAGTCAATTCATCTAGATCTGTCATTGGAT
TTACTATCAAAGAAATCAACCGGTGATAATCAATTGCCACCTTCGCGAAG
TCAATGGATCCTGAAAAATCGTTCGACGTATGTGATAAGAAAGCACTCTC
AAACAAAATATTGCCACTTTCGGCGAAGCTAATGGAACTTGAAGAGCACA
TTTTGCGAATGAATAGTAAGTTTGATATTGTTTTGAGTAAATTAAGTAAT
TCTGATTTTAATGATAATAATTGTAATTTAAATATACTAAATAAAATTAA
TGTCGATAATAAGGATGACTTAAATATCTCATCTAATTATAATCTTGTTT
CAGAAAATGTCTTAAATAAATATATTAAGGAATCATCAGTTGATGAATTA
TTTAATGATACTGAAAAAGTTTCAAATGCAGAAAATAGTCCTTTAAATCC
TATTAATACACAGTTTGAAAATTTTAAAGTTACTGTAACTAAGGATGCTT
TAAATATGAAAAGATTTAACTCAAATTACCTTCCACGTATTTTAAATAAA
AATGAACGTCATGATATTATTAATAATTATCCATGCTTCATAAGTTTATT
GAAAAAGAAAAATTCTAAGACCAAGTTTGATCATATTAATTATAAACTTT
CCTTGATTAATAAATCGAAACTTAATTTTAAAATAAAAGATTGTGATAAT
TTATTCTATAGAAATGGCAATCTCTGCTTTTCAATCAAGTTAAGTGAAAT
TAAAAAATCAGATGCTACTAAAAAGATAATTACAAAATCAACAAATTTTC
AAAATAAAAATAAAACCATTATTACCAACCTTGTTAATACTGATAATTAT
TGTTCCAAGCTGATTAAAGCTCCATTAGCAATAAAGAAATTTTTATTTGT
ATTTTCCCGTAAATTAGCCGAAACAGTTTCTATTAAAAACGACCTGCATA
AAGGAACTGTCATTAATAAAACTTTGGATAATTTAAAATTTCAAAAACAA
TTACCATACTTTCTTGTAAAATCTGACTTAAAATATGCTGATGGTGACTT
TATTATGAAGGATCTTTTAACTTCTGAAGATGCTGATAATGAATCTTTTA
ATATTGGGTTATCTAATTTAACAAGATCGCAGCTTAATAAACTTTATTTT
GATTTCCCAGAGATTAAAGAGATGTGTTTTACTGAAGGCATGCACAAAGA
TTCTGATAAGATAAGTAGTTTAATTAATCACTTAAAGTTAAATAAAGAAT
TTCCAAAAGATATTTCATTTTCTGGTTGTAAATTTATTATAAAACAAAAA
TCAAATAAAATAGAACCCGATTCTTGGATTATTCGACTTATTTAAGATAT
CTAAAGACGATATAGAACTTGAGAGACTTATTTCATTACCTGCTTCTTCA
AATAAAATTGTTGAAATAATTTTCCACCTAAATTATTTAAACTTAAAGGG
TAATGTAAAATATTTTAGTAACATCACATATGGTACTTATGTTTTAAATT
ATTTCCGTAATGTTTTACTATTACATTCTATTATTGATAGTGAAAAATGC
AATTCGTTGATAATTGATACTCTTGAAATATGGGGGTCTGAATTAACTGA
TCAAATTCCTTCTACTTCCTATTTTAAATTTAGTTGTCAAGAAAAACTAA
TTAAATATGAAAAGTGGTTACTTAATGGC
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protein sequence of SMED30025505-orf-1

>SMED30025505-orf-1 ID=SMED30025505-orf-1|Name=SMED30025505-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=113bp
MTQSLSVVQAQLASDQLNNSSSELVIFKTILENQIIYSQQLLDFISQRSN
GHNQLPLSPKSIHLDLSLDLLSKKSTGDNQLPPSRSQWILKNRSTYVIRK
HSQTKYCHFRRS*
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protein sequence of SMED30025505-orf-2

>SMED30025505-orf-2 ID=SMED30025505-orf-2|Name=SMED30025505-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=414bp
MDPEKSFDVCDKKALSNKILPLSAKLMELEEHILRMNSKFDIVLSKLSNS
DFNDNNCNLNILNKINVDNKDDLNISSNYNLVSENVLNKYIKESSVDELF
NDTEKVSNAENSPLNPINTQFENFKVTVTKDALNMKRFNSNYLPRILNKN
ERHDIINNYPCFISLLKKKNSKTKFDHINYKLSLINKSKLNFKIKDCDNL
FYRNGNLCFSIKLSEIKKSDATKKIITKSTNFQNKNKTIITNLVNTDNYC
SKLIKAPLAIKKFLFVFSRKLAETVSIKNDLHKGTVINKTLDNLKFQKQL
PYFLVKSDLKYADGDFIMKDLLTSEDADNESFNIGLSNLTRSQLNKLYFD
FPEIKEMCFTEGMHKDSDKISSLINHLKLNKEFPKDISFSGCKFIIKQKS
NKIEPDSWIIRLI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000070intestinal phagocyte