SMED30025486

Overview
NameSMED30025486
Smed IDSMED30025486
Length (bp)3054
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30025486 (SMED30025486) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30025486 (SMED30025486) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30025486 (SMED30025486) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30025486 (SMED30025486) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30025486

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30025486h1SMcG0006985 Contig7485newmark_estsPMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30025486h1SMcG0006985 Contig7485uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
head regionSMED30025486 SmedASXL_050861SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
X1 cellSMED30025486h1SMcG0006985 SmedASXL_000846SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30025486h1SMcG0006985 SmedASXL_047599SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30025486 SmedASXL_007615SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
reproductive organSMED30025486h1SMcG0006985 Contig9060newmark_estsPMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30025486h1SMcG0006985 Contig9060uc_Smed_v2PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
zeta neoblastSMED30025486h1SMcG0006985 dd_Smed_v4_37111_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30025486 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.004955:13454..16383 -12148
Homology
BLAST of SMED30025486 vs. Planmine SMEST
Match: SMESG000054261.1 (SMESG000054261.1)

HSP 1 Score: 266.544 bits (680), Expect = 2.292e-81
Identity = 163/268 (60.82%), Postives = 194/268 (72.39%), Query Frame = 1
Query: 1414 AAMMQRLDKLEREHAILTSKYQKIKHTWSSPETTHGLYQKISRLSQARDDLIIENRSQQITISEQSAALWQIFTEHELLTCLPSLRLAQEIDIIPAHHFPLH---QANQRISPSGNIEGXXXXXXXXXXXXXXXXXXXXXXXALLQTNLRIEEPAEMVDLPPTYEEVEQHISDPDIVYAPTLPFFRHPTSTQINLNVEENEQPDQIRISTMLNLTPIEIGILSERVSPSTHSTIGPATLSQEEPSQVTSNPSTRYPKRRRLPVDIDGE 2208
            AA +Q+LDKLERE+AIL  KYQ++K TWSS ET   LYQKISRLS+ARDDLIIENRS++ITIS+QSAALWQIFTEHELLT LPS RL QE+DIIPAHH PL    Q    +S + N E    N R RPNRNRRRR+R+RAENALLQ NLR EEP +M +L  T++E ++  SD D++YAP  PFF+HP+STQI +N+   + P +I ISTMLN  PIE    S   SP   S + P    QEEP +   NP  R PKRRRLPVDID +
Sbjct:   18 AATLQKLDKLERENAILQEKYQRVKGTWSSTETIKRLYQKISRLSRARDDLIIENRSRRITISKQSAALWQIFTEHELLTRLPSRRLTQELDIIPAHHLPLQTTIQMPNTLSYTNNPESVSGNWRHRPNRNRRRRQRQRAENALLQANLRQEEPMKMSELQNTFDEEDRCASDLDVIYAPVPPFFQHPSSTQITVNITRIKSPTRISISTMLNPPPIETETTSTHSSPVILSVVEPTISLQEEPRRSAPNPPVRCPKRRRLPVDIDDD 285          
BLAST of SMED30025486 vs. Planmine SMEST
Match: SMESG000042162.1 (SMESG000042162.1)

HSP 1 Score: 244.588 bits (623), Expect = 1.371e-72
Identity = 163/267 (61.05%), Postives = 189/267 (70.79%), Query Frame = 1
Query: 1417 AMMQRLDKLEREHAILTSKYQKIKHTWSSPETTHGLYQKISRLSQARDDLIIENRSQQITISEQSAALWQIFTEHELLTCLPSLRLAQEIDIIPAHHFPLHQANQRIS---PSGNIEGXXXXXXXXXXXXXXXXXXXXXXXALLQTNLRIEEPAEMVDLPPTYEEVEQHISDPDIVYAPTLPFFRHPTSTQINLNVEENEQPDQIRISTMLNLTPIEIGILSERVSPSTHSTIGPATLSQEEPSQVTSNPSTRYPKRRRLPVDIDGE 2208
            A MQ+LDKLER+ A L +KYQK+K TWSSPETTHGL Q ISRLS+ARDDL I+ RSQ+ITISEQSAAL QIFT++EL T LP   LAQEIDII A H PL    Q I+   PSG+      NQRRRPNRNRRRR+RRRAENA+LQ NLR  +  +M + PP Y EVE    DPD+VYAP+L  +  P S  I+L  EENE P+       LNL P EI +LS RV P+ HS I PAT +QEEPSQ+T   + RYPK R LPVDID E
Sbjct:   64 AAMQKLDKLERDFATLQAKYQKVKGTWSSPETTHGLDQSISRLSRARDDLRIQTRSQRITISEQSAALQQIFTKNELRTRLPRRSLAQEIDIILAQHLPLRPVVQSINGPHPSGS-----GNQRRRPNRNRRRRKRRRAENAILQANLRAGDQTDMTNSPPAYTEVEFPAYDPDVVYAPSLTIYPPPPSIYIDLEAEENEPPNFNHTLERLNLAPEEIAVLSGRVPPTIHSAIEPATSTQEEPSQLTPTSTHRYPKLRCLPVDIDTE 325          
BLAST of SMED30025486 vs. Planmine SMEST
Match: SMESG000069599.1 (SMESG000069599.1)

HSP 1 Score: 232.261 bits (591), Expect = 1.253e-68
Identity = 141/190 (74.21%), Postives = 159/190 (83.68%), Query Frame = 1
Query: 1417 AMMQRLDKLEREHAILTSKYQKIKHTWSSPETTHGLYQKISRLSQARDDLIIENRSQQITISEQSAALWQIFTEHELLTCLPSLRLAQEIDIIPAHHFPLHQANQ---RISPSGNIEGXXXXXXXXXXXXXXXXXXXXXXXALLQTNLRIEEPAEMVDLPPTYEEVEQHISDPDIVYAPTLPFFRHPTST 1977
            AMMQ+LDKL+RE A L +KY+K+K TWSSPETTHGL QKISRLS+A+ DLI+ENRSQ+ITISE+SAAL QIFTEHEL+T LPS RLAQE+DIIPAHH PLH A Q   R  PSG  EGR  NQRRRPNRNRRRRE+RRAENALLQTNLR  E AEMVDLPP YEEVEQH+ D D++YAP  P+FR P+S 
Sbjct:  119 AMMQKLDKLKREFATLQTKYRKVKGTWSSPETTHGLSQKISRLSRAQGDLIVENRSQRITISEESAALRQIFTEHELMTRLPSWRLAQELDIIPAHHLPLHPATQSHNRPPPSGIAEGRTGNQRRRPNRNRRRREKRRAENALLQTNLRSGESAEMVDLPPAYEEVEQHLFDRDVIYAPVSPYFRRPSSA 308          
BLAST of SMED30025486 vs. Planmine SMEST
Match: SMESG000070265.1 (SMESG000070265.1)

HSP 1 Score: 228.794 bits (582), Expect = 6.199e-67
Identity = 155/275 (56.36%), Postives = 182/275 (66.18%), Query Frame = 1
Query: 1393 NRSLNISAAMMQRLDKLEREHAILTSKYQKIKHTWSSPETTHGLYQKISRLSQARDDLIIENRSQQITISEQSAALWQIFTEHELLTCLPSLRLAQEIDIIPAHHFPLHQANQ--RISPS-GNIEGXXXXXXXXXXXXXXXXXXXXXXXALLQTNLRIEEPAEMVDLPPTYEEVEQHISDPDIVYAPTLPFFRHPTSTQINLNVEENEQPDQIRISTMLNLTPIEIGILSERVSPSTHSTIGPATLSQEEPSQVTSNPSTRYPKRRRLPVDIDGE 2208
            +++L I       + ++      L  K  ++K TWSSPETT  LYQKISRL +ARDDLIIENRSQ+ TIS QSAAL QIF EHELLT LPS RLAQE+DII AHH PL    Q   I PS GN E R  +QR RPNRNR RR+RRRAENALLQ NLR E P E+ +L  T+E  ++  S+ D++YAP  PFFRHP STQIN+N    E   +I ISTMLN  PIE    S   SP   S + PAT SQE P Q   NP  + PKRR LPVD+DG+
Sbjct:   67 SKNLTIRRGNDAEIGQIGERKCYLVGKVLRVKGTWSSPETTKELYQKISRLFRARDDLIIENRSQRNTISGQSAALRQIFREHELLTRLPSRRLAQELDIIHAHHLPLQPTIQLPNILPSIGNPESRSRSQRHRPNRNRHRRQRRRAENALLQANLRPEGPMEISELQTTFEREDRRASNLDVIYAPVRPFFRHPYSTQININATGLESLTRISISTMLNPPPIETETSSGYSSPVILSVVEPATSSQEGPRQSALNPPVKGPKRRCLPVDMDGD 341          
BLAST of SMED30025486 vs. Planmine SMEST
Match: SMESG000035723.1 (SMESG000035723.1)

HSP 1 Score: 222.631 bits (566), Expect = 2.844e-66
Identity = 157/221 (71.04%), Postives = 176/221 (79.64%), Query Frame = 1
Query: 1552 ARDDLIIENRSQQITISEQSAALWQIFTEHELLTCLPSLRLAQEIDIIPAHHFPLHQANQRISP---SGNIEGXXXXXXXXXXXXXXXXXXXXXXXALLQTNLRIEEPAEMVDLPPTYEEVEQHISDPDIVYAPTLPFFRHPTSTQINLNVEENEQPDQIRISTMLNLTPIEIGILSERVSPSTHSTIGPATLSQEEPSQVTSNPSTRYPKRRRLPVDIDG 2205
            ARDDLII+NRSQ+ITISEQSAAL QIFTEHEL + LPS R+AQEIDII A+HFPLH A    +    SG+ E R  +QRRRPNRNRRRRERRRAENAL+QT LR  E  EMVDLPP YEEV+ H  DPD++YAP  PFF  P+S+QINLN+ ++EQP QIRISTMLNLTPIEIGILSER +P   STI PAT SQE  SQ  SNP  RYP+RRRLPVDIDG
Sbjct:    2 ARDDLIIKNRSQRITISEQSAALRQIFTEHELQSRLPSRRVAQEIDIITAYHFPLHLATHLHNGPLLSGSAEIRTGSQRRRPNRNRRRRERRRAENALIQTILRAGEQMEMVDLPPAYEEVKLHSRDPDVIYAPVSPFFHRPSSSQINLNMVDSEQPSQIRISTMLNLTPIEIGILSERTAPIIQSTIEPATSSQEGSSQSASNPPARYPRRRRLPVDIDG 222          
The following BLAST results are available for this feature:
BLAST of SMED30025486 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025486 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025486 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025486 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025486 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025486 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025486 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025486 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025486 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025486 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025486 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025486 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025486 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025486 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000054261.12.292e-8160.82SMESG000054261.1[more]
SMESG000042162.11.371e-7261.05SMESG000042162.1[more]
SMESG000069599.11.253e-6874.21SMESG000069599.1[more]
SMESG000070265.16.199e-6756.36SMESG000070265.1[more]
SMESG000035723.12.844e-6671.04SMESG000035723.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30025486 ID=SMED30025486|Name=SMED30025486|organism=Schmidtea mediterranea sexual|type=transcript|length=3054bp
CATGTTACGACTGGGCATCAGGGATAAGATAACGACACCACAACGAATAC
AGATTTTAAAAAATGTCGAAAAGGGAATTTTTCATTGGGAATTGTTAGAC
GAAAATAAGACTCTCTAAATAATTCAGAAAACCATAACAAATCCATAGGC
AAAACCCCCGATAGTTTAACGCCAAAAATTCCATCAGGTAGTTAGTGAAT
ATCGTTGGAGAGAAAATTAGGGCGACGTTAACCATAAAACGATACGACCA
AATTGTTATAGATCATAGAAACCTAAAGATTTCAGGACACAATCCACGCG
ATCGCCGTCTTATAAAACGTGTAGTGAAAGACCCGTAAATAAATCAACAT
AGACTTCGCCCCAACTGATTACGATAATTATAATTACAATACCATTACTC
GCTAGTCCATAGTCCGCCATACAATCGCAAATATCGAATAGATTAGTAAT
CTAAATAATCAATTTACATTGCGTGTAGAATTTTATACGAATTTTATACC
ACAGGATCGTTCAGAGAAAATCGTGAGTAGTATATTTATTGATAACTAGG
GATAATAATGAAAAATAATTCTGATCGTCAAAGTTCATATAAGGAGAATC
CTTTGACCACAGCCAGAACAAATGATTTAAGCCAATAAAATATTGTTCGG
ACGACACGAGTAGAGAACCCTGTATCCATTTGCGATGTAATGAAGTTTTG
TTTTTATTATTAATAAGTTCACGACCAACAATAGTCAACGAAATCTTCTT
TCGAATATTTATTATGATTATTACAATTTTACTATTAATATTTATTAAAA
TTAACATGCAAATGTGGTCCCTCAATATTATAAAAATGTGAAACGTTAAA
TAAAATGAACCCCTACTATGAAATGAAAATTGAGAGTTTCGTTGCTTAGA
ATGAAATTATGGGTAAATTGTGTATTGACAGTTGAATTTTCGACTTATAA
GTTTTAACAAACTATGCTGAATTCAAAACTAAGTAATTTGTGCCAACCCC
AGACTGACCAGCGCGTTTTTCTTTCAAGCTACCCGTGAGTAAAGTCATGG
CGGTTAATCATTACGTTAATTCCAACGGGGATGAGTACTCCTTAAATTAT
CGGGAGCCCAAGTCTTTTCAGTACATGATCACGCCTAAAAAAAATGAATT
TATCTAAACTCCCTTTTATTACATATATAATTACCCTCTAAGACCTGTGT
TATAGCAAAATATTCTTAAATAATTATAATCTTTATTATAAAATTTCCTT
TCTAGACAGTCGATTAATAAGAACTCTATCTTCCTAAATCACCAAAGCTA
TTCTGAATTATAGTCCATTTAAAACGACTGTCGTAGAAGGAAATCCTAAT
TAGGTTCGGTCAGGAAACTTACAAGAATTGTCACTAACAATAAACCGTTC
TTTGAATATCAGCGCGGCCATGATGCAAAGGCTTGATAAACTAGAAAGAG
AACATGCCATCTTAACATCAAAATACCAGAAGATCAAACATACATGGAGT
TCACCCGAAACCACTCACGGTTTATACCAGAAAATATCTCGCCTTTCTCA
AGCTCGCGATGATCTGATCATCGAAAACCGGAGCCAGCAGATCACCATAT
CCGAACAAAGCGCTGCGCTCTGGCAGATTTTTACCGAACATGAACTCCTG
ACTTGCCTACCGAGTCTGAGATTGGCGCAGGAAATCGATATCATTCCTGC
GCATCATTTCCCTCTCCACCAAGCGAATCAACGGATCTCCCCAAGCGGGA
ATATAGAAGGCCGAGTAGAAAATCAGAGGCGCCGACCCAACCGAAACCGC
CGCCGCCGAGAAAGACGACGGGCAGAAAACGCTCTGCTGCAAACTAACCT
GAGAATCGAAGAACCAGCAGAAATGGTCGACTTACCTCCCACGTACGAAG
AAGTAGAACAGCACATATCGGATCCAGATATAGTCTATGCACCGACGTTG
CCGTTCTTCAGACACCCAACCTCAACTCAAATAAATCTCAATGTGGAGGA
AAATGAACAGCCTGACCAGATCCGTATATCGACGATGCTGAATCTCACTC
CGATTGAGATAGGAATTTTAAGCGAACGTGTGTCTCCAAGCACCCACTCT
ACTATCGGGCCGGCAACCTTGTCTCAAGAAGAGCCGAGCCAAGTGACTTC
AAACCCCTCTACCCGATATCCCAAACGTCGACGGTTACCTGTTGACATCG
ATGGAGAATTTTAGTGTACACGCCCAAAGCATAGAATATTACGACTCTGA
CTCCGTACAGTACCTTACGCCTGGTAGAAATGACCCTATTTGCTACTCAT
TAGTGTATTCACTGCATTTTTAAATTAATTGTATTCTTCATGTATTGTCC
TATTATATTATCCTGTACTATTTAATATAATGTGTTTTTAAATTACACGC
TATAGTTATAACACTTGTTTTCTTTTTTTAGTTGTAATTAATGGAATATA
TAAGCGACTGTTGTTTAATTACATGCATCAACTGACATCTATCACTAAAT
TATAAACTTTTTTAACGGGTCATAGTGGTAATCAGGAATAAATTAATAGG
TAACCCATATAGCTGTAATAGTAAGCGGAGTTACAACAATTTAATGATTA
AAGATCCGCCATAAATTCACAGACCCGTAGTTAAGATTTGATATTTAAAA
CTGTTGCTAAATAGTTGGTACTCTCCCATTTCATAACTAATTCCCAAACG
CAACGAACCAGGTTCTCCTTAAGGATTATGGGATCAGAATGAAATGCGTA
AGACCTTCTAGCGGCCGCGGTGAACCGGAAACGAAGGTTGTTCGAGGAGT
AGTATTGGTAACAATGCTCACCTGCTCGAATGGCATTAAGCTGTCATACA
GATTACCAACATGGTTCCAACCATGGGTGTATCATGGTAAGTGATAAATT
ATGTGGTGTGCGTGGGGAATTAACCCTAGAGTAGGATAGGCAAGTGTTCT
TAACGAGAGTCATGAATCCTCATCAATAAAGTTTTCCCCGCACACCAACA
CGAGGAAGGAAACCATAATTAAATATGAGTGTGGAACGGACACATTGGAA
ATAA
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protein sequence of SMED30025486-orf-1

>SMED30025486-orf-1 ID=SMED30025486-orf-1|Name=SMED30025486-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=265bp
MMQRLDKLEREHAILTSKYQKIKHTWSSPETTHGLYQKISRLSQARDDLI
IENRSQQITISEQSAALWQIFTEHELLTCLPSLRLAQEIDIIPAHHFPLH
QANQRISPSGNIEGRVENQRRRPNRNRRRRERRRAENALLQTNLRIEEPA
EMVDLPPTYEEVEQHISDPDIVYAPTLPFFRHPTSTQINLNVEENEQPDQ
IRISTMLNLTPIEIGILSERVSPSTHSTIGPATLSQEEPSQVTSNPSTRY
PKRRRLPVDIDGEF*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
PLANA:0002109X1 cell