Pinin, desmosome associated protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30025387 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of Pinin, desmosome associated protein vs. Ensembl Human
Match: PNN (pinin, desmosome associated protein [Source:HGNC Symbol;Acc:HGNC:9162]) HSP 1 Score: 67.3958 bits (163), Expect = 3.443e-11 Identity = 60/195 (30.77%), Postives = 105/195 (53.85%), Query Frame = 2 Query: 188 NDKDGPSL-NSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEIVKAVKYSESHLEGGNMK 769 +D P+L +SVV +K RTR D + + K K+R +R+FG LMGTL K+++ +T + R +IE+K+E + + ++ E+ EL +R +Q +L++L Q+ A+ + W K+ YIRT P +FY P + TQ I+++ R+++A+ E R+ IE + + E+ +MK Sbjct: 105 DDVKKPALQSSVVATSKERTRRDLI--QDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVATE--RQKRRQEIEQKLEVQAEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPHLFYIPGRMCPATQKLIEESQRKMNALFEGRR----IEFAEQINKMEARPRRQSMK 291
BLAST of Pinin, desmosome associated protein vs. Ensembl Celegans
Match: pnn-1 (PiNiN nuclear speckle-associated protein and splicing factor homolog [Source:UniProtKB/TrEMBL;Acc:Q95ZQ5]) HSP 1 Score: 50.447 bits (119), Expect = 1.641e-6 Identity = 41/138 (29.71%), Postives = 83/138 (60.14%), Query Frame = 2 Query: 299 RCKRLFGHL-MGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQ-TAREIDAMIETRKKKL 706 R +RLF +L MGTL+S KK +K+T + K ++ ++ + E+ ++E+++LL +RE++ +LK L ++ + + ++ + MKG+I+TT +P +F++P + + L + Q T R++D I R+++L Sbjct: 159 RNRRLFSNLIMGTLSSFKKTEKKTTQQEKQEEVEKKLEETKKKD---FESRKEEKHDLLNKRREQEKELKSLQRKKALIQYAEHHANQLKLMKGWIKTTTSPHIFWQP-VKHTVRSLELKQATERQLDDQIADREEQL 292
BLAST of Pinin, desmosome associated protein vs. Ensembl Fly
Match: Pnn (gene:FBgn0037737 transcript:FBtr0113210) HSP 1 Score: 56.225 bits (134), Expect = 2.114e-8 Identity = 36/140 (25.71%), Postives = 75/140 (53.57%), Query Frame = 2 Query: 299 RCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEI 718 R +R+FG L+GTL + E+S + + +I++KVE+ ++K++ L ++++Q +++ L + + F W + K IRT P +F++P + + T+ + ++ E D IE R+++LE+E+ Sbjct: 131 RNRRMFGSLLGTLQKFCQ--EESRLKSKEDKKAEIDRKVEKQELQERAMLRKQRETLFLDRKKKQFEIRRLEYKMARMKDFKVWEATMLNAKNNIRTKTKPHLFFRPKVHSPRTEKLLSKSKSEADVFIEFRREELEVEL 268
BLAST of Pinin, desmosome associated protein vs. Ensembl Fly
Match: Pnn (gene:FBgn0037737 transcript:FBtr0082126) HSP 1 Score: 56.225 bits (134), Expect = 2.119e-8 Identity = 36/140 (25.71%), Postives = 75/140 (53.57%), Query Frame = 2 Query: 299 RCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEI 718 R +R+FG L+GTL + E+S + + +I++KVE+ ++K++ L ++++Q +++ L + + F W + K IRT P +F++P + + T+ + ++ E D IE R+++LE+E+ Sbjct: 131 RNRRMFGSLLGTLQKFCQ--EESRLKSKEDKKAEIDRKVEKQELQERAMLRKQRETLFLDRKKKQFEIRRLEYKMARMKDFKVWEATMLNAKNNIRTKTKPHLFFRPKVHSPRTEKLLSKSKSEADVFIEFRREELEVEL 268
BLAST of Pinin, desmosome associated protein vs. Ensembl Zebrafish
Match: pnn (pinin, desmosome associated protein [Source:ZFIN;Acc:ZDB-GENE-060519-3]) HSP 1 Score: 56.9954 bits (136), Expect = 3.906e-8 Identity = 50/175 (28.57%), Postives = 97/175 (55.43%), Query Frame = 2 Query: 203 PSL-NSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEIVK 724 P+L +SVV +K RTR D + + + K+R +R+FG LMGTL K+++ ST + R +IE+K+E + + ++ E+ EL +R +Q +L++L + A+ + W + K+ +IRT P +FY P + TQ ++++ ++++ + + R++ +I K Sbjct: 111 PALQSSVVATSKERTRRD--LIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESTVSTERLKR--RQEIEQKLEVQAEQERKKVECERRELFEERRAKQTELRLLEHKVELAQLQEDWNAHNSKLIKFIRTKTKPPIFYLPGRMCSATQKLLEESQKKLNGVFDERREAFAEQINK 281
BLAST of Pinin, desmosome associated protein vs. Ensembl Xenopus
Match: pnn (pinin, desmosome associated protein [Source:NCBI gene;Acc:448224]) HSP 1 Score: 65.4698 bits (158), Expect = 1.123e-10 Identity = 54/170 (31.76%), Postives = 95/170 (55.88%), Query Frame = 2 Query: 191 DKDGPSL-NSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRK 697 D P+L +SVV +K RTR D + + K K+R +R+FG LMGTL K+++ +T Q R +IE+K+E + + ++ E+ EL +R +Q +L++L Q+ A + W +K+ YIRT P +FY P + +Q D++ ++++A+ E+R+ Sbjct: 108 DDKKPALQSSVVATSKERTRRDLI--QDQNMDEKGKQRNRRIFGLLMGTLQKFKQESNVATE--QQKRRHEIEQKLEVQAEEEKKQVETERRELFEERRTKQTELRLLEQKVELAHLQEEWNDHNKKIIKYIRTKTKPHLFYIPGRMCPPSQKLFDESQKKLNAIFESRR 273
BLAST of Pinin, desmosome associated protein vs. Ensembl Xenopus
Match: pnn (pinin, desmosome associated protein [Source:NCBI gene;Acc:448224]) HSP 1 Score: 65.4698 bits (158), Expect = 1.126e-10 Identity = 54/170 (31.76%), Postives = 95/170 (55.88%), Query Frame = 2 Query: 191 DKDGPSL-NSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRK 697 D P+L +SVV +K RTR D + + K K+R +R+FG LMGTL K+++ +T Q R +IE+K+E + + ++ E+ EL +R +Q +L++L Q+ A + W +K+ YIRT P +FY P + +Q D++ ++++A+ E+R+ Sbjct: 108 DDKKPALQSSVVATSKERTRRDLI--QDQNMDEKGKQRNRRIFGLLMGTLQKFKQESNVATE--QQKRRHEIEQKLEVQAEEEKKQVETERRELFEERRTKQTELRLLEQKVELAHLQEEWNDHNKKIIKYIRTKTKPHLFYIPGRMCPPSQKLFDESQKKLNAIFESRR 273
BLAST of Pinin, desmosome associated protein vs. Ensembl Xenopus
Match: pnn (pinin, desmosome associated protein [Source:NCBI gene;Acc:448224]) HSP 1 Score: 65.4698 bits (158), Expect = 1.183e-10 Identity = 54/170 (31.76%), Postives = 95/170 (55.88%), Query Frame = 2 Query: 191 DKDGPSL-NSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRK 697 D P+L +SVV +K RTR D + + K K+R +R+FG LMGTL K+++ +T Q R +IE+K+E + + ++ E+ EL +R +Q +L++L Q+ A + W +K+ YIRT P +FY P + +Q D++ ++++A+ E+R+ Sbjct: 108 DDKKPALQSSVVATSKERTRRDLI--QDQNMDEKGKQRNRRIFGLLMGTLQKFKQESNVATE--QQKRRHEIEQKLEVQAEEEKKQVETERRELFEERRTKQTELRLLEQKVELAHLQEEWNDHNKKIIKYIRTKTKPHLFYIPGRMCPPSQKLFDESQKKLNAIFESRR 273
BLAST of Pinin, desmosome associated protein vs. Ensembl Mouse
Match: Pnn (pinin [Source:MGI Symbol;Acc:MGI:1100514]) HSP 1 Score: 67.781 bits (164), Expect = 1.864e-11 Identity = 60/195 (30.77%), Postives = 105/195 (53.85%), Query Frame = 2 Query: 188 NDKDGPSL-NSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEIVKAVKYSESHLEGGNMK 769 +D P+L +SVV +K RTR D + + K K+R +R+FG LMGTL K+++ +T + R +IE+K+E + + ++ E+ EL +R +Q +L++L Q+ A+ + W K+ YIRT P +FY P + TQ I+++ R+++A+ E R+ IE + + E+ +MK Sbjct: 105 DDVKKPALQSSVVATSKERTRRDLI--QDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVATE--RQKRRQEIEQKLEVQAEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPHLFYIPGRMCPATQKLIEESQRKMNALFEGRR----IEFAEQINKMEARPRRQSMK 291
BLAST of Pinin, desmosome associated protein vs. UniProt/SwissProt
Match: sp|O35691|PININ_MOUSE (Pinin OS=Mus musculus OX=10090 GN=Pnn PE=1 SV=4) HSP 1 Score: 68.1662 bits (165), Expect = 8.717e-11 Identity = 60/195 (30.77%), Postives = 105/195 (53.85%), Query Frame = 2 Query: 188 NDKDGPSL-NSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEIVKAVKYSESHLEGGNMK 769 +D P+L +SVV +K RTRD + + K K+R +R+FG LMGTL K+++ +T + R +IE+K+E + + ++ E+ EL +R +Q +L++L Q+ A+ + W K+ YIRT P +FY P + TQ I+++ R+++A+ E R+ IE + + E+ +MK Sbjct: 105 DDVKKPALQSSVVATSKERTRD---LIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVATE--RQKRRQEIEQKLEVQAEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPHLFYIPGRMCPATQKLIEESQRKMNALFEGRR----IEFAEQINKMEARPRRQSMK 290
BLAST of Pinin, desmosome associated protein vs. UniProt/SwissProt
Match: sp|Q9H307|PININ_HUMAN (Pinin OS=Homo sapiens OX=9606 GN=PNN PE=1 SV=5) HSP 1 Score: 67.3958 bits (163), Expect = 1.653e-10 Identity = 60/195 (30.77%), Postives = 105/195 (53.85%), Query Frame = 2 Query: 188 NDKDGPSL-NSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEIVKAVKYSESHLEGGNMK 769 +D P+L +SVV +K RTR D + + K K+R +R+FG LMGTL K+++ +T + R +IE+K+E + + ++ E+ EL +R +Q +L++L Q+ A+ + W K+ YIRT P +FY P + TQ I+++ R+++A+ E R+ IE + + E+ +MK Sbjct: 105 DDVKKPALQSSVVATSKERTRRDLI--QDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVATE--RQKRRQEIEQKLEVQAEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPHLFYIPGRMCPATQKLIEESQRKMNALFEGRR----IEFAEQINKMEARPRRQSMK 291
BLAST of Pinin, desmosome associated protein vs. UniProt/SwissProt
Match: sp|Q5R5X0|PININ_PONAB (Pinin OS=Pongo abelii OX=9601 GN=PNN PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 2.133e-10 Identity = 60/195 (30.77%), Postives = 105/195 (53.85%), Query Frame = 2 Query: 188 NDKDGPSL-NSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEIVKAVKYSESHLEGGNMK 769 +D P+L +SVV +K RTR D + + K K+R +R+FG LMGTL K+++ +T + R +IE+K+E + + ++ E+ EL +R +Q +L++L Q+ A+ + W K+ YIRT P +FY P + TQ I+++ R+++A+ E R+ IE + + E+ +MK Sbjct: 105 DDVKKPALQSSVVATSKERTRRDLI--QDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVATE--RQKRRQEIEQKLEVQAEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPHLFYIPGRMCPATQKLIEESQRKMNALFEGRR----IEFAEQINKMEARPRRQSMK 291
BLAST of Pinin, desmosome associated protein vs. UniProt/SwissProt
Match: sp|P79149|PININ_CANLF (Pinin OS=Canis lupus familiaris OX=9615 GN=PNN PE=2 SV=3) HSP 1 Score: 62.7734 bits (151), Expect = 3.949e-9 Identity = 59/195 (30.26%), Postives = 104/195 (53.33%), Query Frame = 2 Query: 188 NDKDGPSL-NSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEIVKAVKYSESHLEGGNMK 769 +D P+L +SVV +K RTR D + + K K+R +R+FG LMGTL K+++ +T + R +IE+K+E + + ++ E+ EL +R +Q +L++L Q+ A+ + W K+ YIRT P +FY + TQ I+++ R+++A+ E R+ IE + + E+ +MK Sbjct: 105 DDVKKPALQSSVVATSKERTRRDLI--QDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVATE--RQKRRQEIEQKLEVQAEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPHLFYILGRMCPATQKLIEESQRKMNALFEGRR----IEFAEQINKMEARPRRQSMK 291
BLAST of Pinin, desmosome associated protein vs. UniProt/SwissProt
Match: sp|P79122|PININ_BOVIN (Pinin OS=Bos taurus OX=9913 GN=PNN PE=2 SV=3) HSP 1 Score: 59.3066 bits (142), Expect = 4.625e-8 Identity = 56/195 (28.72%), Postives = 103/195 (52.82%), Query Frame = 2 Query: 188 NDKDGPSL-NSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEIVKAVKYSESHLEGGNMK 769 +D P+L +SVV +K R+ + L + +N + + ER +FG LMGTL K+++ +T + R +IE+K+E + + ++ E+ EL +R +Q +L++L Q+ A+ + W K+ YIRT P +FY P + +L I+++ R+ +A+ E R+ IE + + E+ +MK Sbjct: 105 DDVKKPALQSSVVATSKERSTERPLFQDQNTDEKETPERPGPIFGLLMGTLQKFKQESTVATE--RQKRRQEIEQKLEVQAEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPHLFYIPGRMCPAPKL-IEESQRKTNALFEGRR----IEFAEQINKMEARPRRQSMK 292
BLAST of Pinin, desmosome associated protein vs. TrEMBL
Match: A0A4Z2CWX5 (Pinin OS=Schistosoma japonicum OX=6182 GN=EWB00_007005 PE=4 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 6.599e-31 Identity = 84/254 (33.07%), Postives = 145/254 (57.09%), Query Frame = 2 Query: 17 LKRTISLCKEGINTADQNLIKLTGR--SYDKTENLPNQRFNKRRINV------------EHEVPSEVKKPRNDKDGPSL-NSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEIVKAVK 733 LK+ + L KE + D ++ ++TGR S + ++ N+R R + + ++E+ ++K+P +D S+ +SVV++T R+R DA + +KER +R+ G L GTL + ++ + PQ R ++ K+E K E +++E+ EL R++RE ++ IL Q+ R F+ W+ ++EKMKGY RT+K P++FY+P I NE+++ RI+ R IDA+I R+KKLE E + V+ Sbjct: 7 LKKDLELAKEQLKIVDNDIKRITGRDPSDRRVGDVNNKRIRPRTVGINQLRPDSLDKVNDNEIFQDIKRPVDDDLKVSIASSVVRVTDTRSRQDA----AKELKKSDKERGRRMLGILQGTLKQFQAESVAAVKKPQMEKRRLVDAKLEARAKEEKENLRRERAELFRARREHHVEVSILQQKMRLLRKFEIWKEQQEKMKGYCRTSKPPYIFYRPKIHNEKSKWRIEAAVRAIDALIARRRKKLETEFEETVQ 256
BLAST of Pinin, desmosome associated protein vs. TrEMBL
Match: A0A095BX45 (Pinin OS=Schistosoma haematobium OX=6185 GN=MS3_01785 PE=4 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 9.388e-27 Identity = 82/237 (34.60%), Postives = 136/237 (57.38%), Query Frame = 2 Query: 17 LKRTISLCKEGINTADQNLIKLTGR--SYDKTENLPNQRFNKRRINVEHEVPSEVKKPRNDK-DGPSLNSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEI 718 LK+ + L KE + D ++ ++TGR S + ++R R V ++K+P +D +SVV++T R+R+DA + +KER +R+ G L GTL + ++ + PQ R ++ K+E K E +++E+ EL R++RE ++ IL Q+ R + F+ W+ ++EKMKG+ RT+K P++FY+P I NEE++ RI+ T R IDA+I R+KKLE E Sbjct: 7 LKKNLELAKEQLKIVDNDIKRITGRDPSDRRIGEANSKRIRARIAGVNQLSLQDIKRPIDDDLRVSVASSVVRVTDTRSREDA----AKELKKSDKERGRRMLGILQGTLKQFQAESAAAIKKPQMEKRRLVDAKLEARAKEEKENLRRERAELFRTRREHHVEVSILQQKMRLLKKFEIWKEQQEKMKGFCRTSKPPYIFYRPKIHNEESKWRIEVTVRAIDALIARRRKKLETEF 239
BLAST of Pinin, desmosome associated protein vs. TrEMBL
Match: A0A183KA05 (Uncharacterized protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS11838 PE=4 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.041e-25 Identity = 84/256 (32.81%), Postives = 141/256 (55.08%), Query Frame = 2 Query: 17 LKRTISLCKEGINTADQNLIKLTGRSYDKTENLPNQR----FNKRRINV-----------------EHEVPSEVKKPRNDK-DGPSLNSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEI 718 LK+ + L KE + D ++ ++TGR P++R N +RI + ++ ++K+P +D +SVV++T R+R+DA + +KER +R+ G L GTL + ++ + PQ R ++ K+E K E +++E+ EL R++RE ++ IL Q+ R + F+ W+ ++EKMKG+ RT+K P++FY+P I NEE++ RI+ TAR IDA+I R+KKLE E Sbjct: 7 LKKNLELAKEQLKIVDNDIKRITGRD-------PSERRIGEANSKRIRARIAGVNQLRPDSSDKVNDDKILQDIKRPIDDDLRVSVASSVVRVTDTRSREDA----AKELKKSDKERGRRMLGILQGTLKQFQAESAAAIKKPQMEKRRLVDAKLEARAKEEKENLRRERAELFRTRREHHVEVSILQQKMRLLKKFEIWKEQQEKMKGFCRTSKPPYIFYRPKIHNEESKWRIEVTARAIDALIARRRKKLETEF 251
BLAST of Pinin, desmosome associated protein vs. TrEMBL
Match: A0A3Q0KUH4 (Pinn, putative OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 5.446e-24 Identity = 81/249 (32.53%), Postives = 136/249 (54.62%), Query Frame = 2 Query: 17 LKRTISLCKEGINTADQNLIKLTGR--SYDKTENLPNQRFNKRRINVEHEVP------------SEVKKPRNDK-DGPSLNSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEI 718 LK+ + L KE + D ++ ++TGR S + ++R R V P ++K+P +D +SVV++T R+R+DA + +KER +R+ G L GTL + ++ + PQ R ++ K+E + E +++E+ EL R++RE ++ IL Q+ R + F+ W+ ++EKMKG+ RT+K P++FY+P I NEE++ RI+ R IDA+I R+KKLE E Sbjct: 7 LKKNLELAKEQLKIVDNDIKRITGRDPSDRRIGEANSKRIRARIAGVNQLRPDSSDKVDDAKILQDIKRPIDDDLRVSVASSVVRVTDTRSREDA----AKELKKSDKERGRRMLGILQGTLKQFQAESAAAIKKPQMEKRRLVDAKLEARAREEKENLRRERAELFRTRREHHVEVSILQQKMRLLKKFEIWKEQQEKMKGFCRTSKPPYIFYRPKIHNEESKWRIEVAVRAIDALIARRRKKLETEF 251
BLAST of Pinin, desmosome associated protein vs. TrEMBL
Match: Q5DEZ4 (SJCHGC01029 protein OS=Schistosoma japonicum OX=6182 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 3.884e-23 Identity = 54/141 (38.30%), Postives = 87/141 (61.70%), Query Frame = 2 Query: 311 LFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEIVKAVK 733 + G L GTL + ++ + PQ R ++ K+E K E +++E+ EL R++RE ++ IL Q+ R F+ W+ ++EKMKGY RT+K P++FY+P I NE+++ RI+ R IDA+I R+KKLE E + V+ Sbjct: 1 MLGILQGTLKQFQAESVAAVKKPQMEKRRLVDAKLEARAKEEKENLRRERAELFRARREHHVEVSILQQKMRLLRKFEIWKEQQEKMKGYCRTSKPPYIFYRPKIHNEKSKWRIEAAVRAIDALIARRRKKLETEFEETVQ 141
BLAST of Pinin, desmosome associated protein vs. Ensembl Cavefish
Match: pnn (pinin, desmosome associated protein [Source:NCBI gene;Acc:103028628]) HSP 1 Score: 62.003 bits (149), Expect = 9.597e-10 Identity = 51/169 (30.18%), Postives = 96/169 (56.80%), Query Frame = 2 Query: 203 PSL-NSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKL 706 P+L +SVV +K RTR D + + K K+R +R+FG LMGTL K+++ ST+ + R +IE+K+E + + ++ E+ EL +R +Q +L++L + A+ + W + K+ +IRT P +FY P + TQ +D++ ++++A+ + R++ Sbjct: 111 PALQSSVVATSKERTRRD--LIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESTVSTDRLKR--RQEIEQKLEVQAEQERKKVESERRELFEERRAKQTELRLLEHKVELAQLQEEWNAHNSKIIKFIRTKTKPPIFYLPGRMCSATQKLLDESQKKMNAVFDERREAF 275
BLAST of Pinin, desmosome associated protein vs. Ensembl Sea Lamprey
Match: pnn (pinin, desmosome associated protein [Source:ZFIN;Acc:ZDB-GENE-060519-3]) HSP 1 Score: 55.8398 bits (133), Expect = 4.616e-9 Identity = 48/154 (31.17%), Postives = 82/154 (53.25%), Query Frame = 2 Query: 212 NSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREI 673 +SVV K RTR D + + K ++R +R+FG LMGTL K AE S + + R +IE KVEE + + E+ EL +R +Q L++L + + A + W + +K+ +IRT P +F+ P +N +TQ ++++ + + Sbjct: 117 SSVVNTAKERTRRD--LIHDQNPDEKGRQRNRRMFGLLMGTLQKFK--AEASEENEKQKRRHEIEAKVEEQAEEERRALALERRELFEERRNQQATLRLLEVKVQLAHLQEEWDAHNQKLLPFIRTKTKPHMFFLPAKMNPDTQKLLEESQKTL 266
BLAST of Pinin, desmosome associated protein vs. Ensembl Nematostella
Match: EDO44058 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RWZ2]) HSP 1 Score: 51.2174 bits (121), Expect = 4.601e-7 Identity = 67/279 (24.01%), Postives = 118/279 (42.29%), Query Frame = 2 Query: 8 LTELKRTISLCKEGINTADQNLIKLTGRSYDKTENLPNQR-----------------FNKRRIN------------------------VEHEVPSEVKKPRNDKDGPSLNSVVQITKGRTR--------DDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRK 697 + EL+R + + +EG+ D+ + KLTGR D +E P R KRR++ H + S+ ++ +D PS+ S V T R DDA K K R +R+FG L+GTL K+D+ ++ + R +I KK+EE E + ++ +L ++R +Q +LK L + + W + I+T TP +FY P+ ++TQ +++++R + + R+ Sbjct: 4 VAELRREVEIAREGLKNVDETIKKLTGR--DPSEFRPPGRRVSLKRDFGDRSGLHGPGGKRRVSGDDQSGPRGRLSSRVIVSQTSQVSARHSLDSDGEEEEDDSKKPSIQSSVVATAAPVRLKREPVIADDA----------KTKSRNRRMFGMLLGTLQKFKQDSVSHSDKEKR--REEINKKLEEKEAKEKEEMATQRRDLYNARRAKQAELKRLEWKVELTAMQEEWDQNSLHLCNSIKTKATPPIFYLPSKHTDKTQKLLEESSRAVKRAMAKRR 268
BLAST of Pinin, desmosome associated protein vs. Ensembl Medaka
Match: pnn (pinin, desmosome associated protein [Source:ZFIN;Acc:ZDB-GENE-060519-3]) HSP 1 Score: 56.9954 bits (136), Expect = 2.799e-8 Identity = 39/142 (27.46%), Postives = 80/142 (56.34%), Query Frame = 2 Query: 299 RCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEIVK 724 R +R+FG LMGTL K+++ S+ + R +IE+K+E + + ++ E+ EL +R +Q +L++L Q+ A+ + W S + +IRT P +FY P + +Q ++++ ++++A+ E R++ ++ K Sbjct: 8 RNRRMFGLLMGTLQKFKQESNVSSE--KQKRRSEIEQKLEVQAEAEKKKVENERRELFEERRAKQTELRLLEQKVELAQLQEEWTSHNNNLLKFIRTKTKPHIFYLPGKMCSASQKLLEESTKKLNAVFEERREAFAEQLNK 147
BLAST of Pinin, desmosome associated protein vs. Planmine SMEST
Match: SMESG000043585.1 (SMESG000043585.1) HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0 Identity = 384/384 (100.00%), Postives = 384/384 (100.00%), Query Frame = 2 Query: 2 MDLTELKRTISLCKEGINTADQNLIKLTGRSYDKTENLPNQRFNKRRINVEHEVPSEVKKPRNDKDGPSLNSVVQITKGRTRDDALIXXXXXXXXXXXXRCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEIVKAVKYSESHLEGGNMKIENLNMDIIDRETIMXXXXXXXXXXXXXXXXXXXKARSRSPVDSLAXXXXXXXXXXXXXXXXXXNPTVHEDDHHNQPPVNHQSPAEQCQPXXXXXXXXXXXXXHVVNVKEETDRPLESMIVPEICSQD 1153 MDLTELKRTISLCKEGINTADQNLIKLTGRSYDKTENLPNQRFNKRRINVEHEVPSEVKKPRNDKDGPSLNSVVQITKGRTRDDALIELKNKENPKEKERCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEIVKAVKYSESHLEGGNMKIENLNMDIIDRETIMNKDPSDINNIISNHNDENKKARSRSPVDSLASEDYEDMIEEIEISMHDENPTVHEDDHHNQPPVNHQSPAEQCQPIEGGINEEISGENHVVNVKEETDRPLESMIVPEICSQD Sbjct: 1 MDLTELKRTISLCKEGINTADQNLIKLTGRSYDKTENLPNQRFNKRRINVEHEVPSEVKKPRNDKDGPSLNSVVQITKGRTRDDALIELKNKENPKEKERCKRLFGHLMGTLNSIKKDAEKSTNDPQNITRLKIEKKVEEGNKLINETIQKEQNELLRSKRERQNDLKILNQRYRAAEAFDRWRSEKEKMKGYIRTTKTPFVFYKPTIINEETQLRIDQTAREIDAMIETRKKKLEIEIVKAVKYSESHLEGGNMKIENLNMDIIDRETIMNKDPSDINNIISNHNDENKKARSRSPVDSLASEDYEDMIEEIEISMHDENPTVHEDDHHNQPPVNHQSPAEQCQPIEGGINEEISGENHVVNVKEETDRPLESMIVPEICSQD 384 The following BLAST results are available for this feature:
BLAST of Pinin, desmosome associated protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of Pinin, desmosome associated protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of Pinin, desmosome associated protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of Pinin, desmosome associated protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of Pinin, desmosome associated protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 3
BLAST of Pinin, desmosome associated protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of Pinin, desmosome associated protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Pinin, desmosome associated protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Pinin, desmosome associated protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Pinin, desmosome associated protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Pinin, desmosome associated protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Pinin, desmosome associated protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Pinin, desmosome associated protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of Pinin, desmosome associated protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30025387 ID=SMED30025387|Name=Pinin, desmosome associated protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1458bpback to top protein sequence of SMED30025387-orf-1 >SMED30025387-orf-1 ID=SMED30025387-orf-1|Name=SMED30025387-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=385bp MDLTELKRTISLCKEGINTADQNLIKLTGRSYDKTENLPNQRFNKRRINVback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|