RNA helicase
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Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30025365 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of RNA helicase vs. Ensembl Human
Match: DDX31 (DEAD-box helicase 31 [Source:HGNC Symbol;Acc:HGNC:16715]) HSP 1 Score: 406.371 bits (1043), Expect = 4.102e-129 Identity = 218/547 (39.85%), Postives = 335/547 (61.24%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAV------------DSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKS---LLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQT-SVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHT-----IEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREIS 2372
E VF+ +F + LHPHLI T++ +K++ T++Q+++IP LL G+D L++S TGSGKTL+Y IP++ SLQA++ I R G YA+V+ PTRELA+Q+ D + KL PF IV G+L+GG K + +K LRKG+NILISTP RL+ H++ ++ + + L+WL+ DEADRI +LG+ +++ ++ + + Q Q VL+SATLT+GV LA ++L +PV + + K ++ +NP+++AV DSF++P L+ ++ V P+KLR+V L +F+L KCK+ + K+VVF ++ +LVEFHY LF L + S +LP+ S + +LHGGME ++R AVF+ FS G LL TDV +RGLD+ + W+VQY+ P +P +YIHR+GRTAR G G +LL L P+E Y+N L + + I+ + V+ G + +H I E + + ED+V S S A+ +S +++Y + +E++ F R LHLGHVAKS + PR +S
Sbjct: 119 EKVFTSAAFHELG-LHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQ--KRQNVLLSATLTEGVTRLADISLHDPV--SISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKF-EEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSA-------SMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIKMEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVSWAKKALQSFIQAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPRNLS 652
BLAST of RNA helicase vs. Ensembl Human
Match: DDX31 (DEAD-box helicase 31 [Source:HGNC Symbol;Acc:HGNC:16715]) HSP 1 Score: 404.06 bits (1037), Expect = 4.346e-127 Identity = 218/547 (39.85%), Postives = 335/547 (61.24%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAV------------DSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKS---LLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQT-SVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHT-----IEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREIS 2372
E VF+ +F + LHPHLI T++ +K++ T++Q+++IP LL G+D L++S TGSGKTL+Y IP++ SLQA++ I R G YA+V+ PTRELA+Q+ D + KL PF IV G+L+GG K + +K LRKG+NILISTP RL+ H++ ++ + + L+WL+ DEADRI +LG+ +++ ++ + + Q Q VL+SATLT+GV LA ++L +PV + + K ++ +NP+++AV DSF++P L+ ++ V P+KLR+V L +F+L KCK+ + K+VVF ++ +LVEFHY LF L + S +LP+ S + +LHGGME ++R AVF+ FS G LL TDV +RGLD+ + W+VQY+ P +P +YIHR+GRTAR G G +LL L P+E Y+N L + + I+ + V+ G + +H I E + + ED+V S S A+ +S +++Y + +E++ F R LHLGHVAKS + PR +S
Sbjct: 224 EKVFTSAAFHELG-LHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKR--QNVLLSATLTEGVTRLADISLHDPV--SISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKF-EEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSA-------SMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIKMEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVSWAKKALQSFIQAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPRNLS 757
BLAST of RNA helicase vs. Ensembl Human
Match: DDX31 (DEAD-box helicase 31 [Source:HGNC Symbol;Acc:HGNC:16715]) HSP 1 Score: 404.06 bits (1037), Expect = 4.346e-127 Identity = 218/547 (39.85%), Postives = 335/547 (61.24%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAV------------DSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKS---LLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQT-SVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHT-----IEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREIS 2372
E VF+ +F + LHPHLI T++ +K++ T++Q+++IP LL G+D L++S TGSGKTL+Y IP++ SLQA++ I R G YA+V+ PTRELA+Q+ D + KL PF IV G+L+GG K + +K LRKG+NILISTP RL+ H++ ++ + + L+WL+ DEADRI +LG+ +++ ++ + + Q Q VL+SATLT+GV LA ++L +PV + + K ++ +NP+++AV DSF++P L+ ++ V P+KLR+V L +F+L KCK+ + K+VVF ++ +LVEFHY LF L + S +LP+ S + +LHGGME ++R AVF+ FS G LL TDV +RGLD+ + W+VQY+ P +P +YIHR+GRTAR G G +LL L P+E Y+N L + + I+ + V+ G + +H I E + + ED+V S S A+ +S +++Y + +E++ F R LHLGHVAKS + PR +S
Sbjct: 224 EKVFTSAAFHELG-LHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKR--QNVLLSATLTEGVTRLADISLHDPV--SISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKF-EEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSA-------SMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIKMEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVSWAKKALQSFIQAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPRNLS 757
BLAST of RNA helicase vs. Ensembl Human
Match: DDX31 (DEAD-box helicase 31 [Source:HGNC Symbol;Acc:HGNC:16715]) HSP 1 Score: 290.426 bits (742), Expect = 3.529e-87 Identity = 158/375 (42.13%), Postives = 243/375 (64.80%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAV------------DSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKS---LLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTT 1874
E VF+ +F + LHPHLI T++ +K++ T++Q+++IP LL G+D L++S TGSGKTL+Y IP++ SLQA++ I R G YA+V+ PTRELA+Q+ D + KL PF IV G+L+GG K + +K LRKG+NILISTP RL+ H++ ++ + + L+WL+ DEADRI +LG+ +++ ++ + + Q Q VL+SATLT+GV LA ++L +PV + + K ++ +NP+++AV DSF++P L+ ++ V P+KLR+V L +F+L KCK+ + K+VVF ++ +LVEFHY LF L + S +LP+ S + +LHGGME ++R AVF+ FS G LL T
Sbjct: 224 EKVFTSAAFHELG-LHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKR--QNVLLSATLTEGVTRLADISLHDPV--SISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKF-EEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSA-------SMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
BLAST of RNA helicase vs. Ensembl Human
Match: DDX18 (DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]) HSP 1 Score: 256.529 bits (654), Expect = 8.863e-74 Identity = 191/603 (31.67%), Postives = 304/603 (50.41%), Query Frame = 3
Query: 561 QIKNSESHVDDTKQN-LINASQPHTKSHQQNNIDSKKHLKNYNTIDNKNKNPKSTLDLDEDANIKDMEKFLSSTKGVNSEPVFSDKSFEKYSEL-HPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARA-GSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETP 2360
Q NSES K+ ++N ++P TK + N + T + +N K D DE + + + L+ F D SF L + + +K + + M T T IQ K+I PLL G+D+L + TGSGKTL++ IP + + + +G +++SPTRELA+QT VL +L V G+++GG + + L G+NI+++TP RLL H++ + G NLQ L+IDEADRI ++G+ E ++Q+++ + +RQ T+L SAT T+ VE+LA ++LK E Y+G ++ N VD GL+ +VCP++ R + L +FL K K++VF ++ V++HY+L + +LP + +HG + +KR F F +G LL TDV +RGLD+ ++W+VQY PP +P +YIHRVGRTAR +G ALL L+P E+ ++ +L+ S KV L S + + ++++ LE + + L A+ YKS +R+Y S ++Q F +L+L VA S P
Sbjct: 101 QSSNSESKKKKKKKRKMVNDAEPDTKKAKTENKGKSEEESAETTKETENNVEKPDNDEDE-SEVPSLPLGLTG--------AFEDTSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELI--VKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ-----TMLFSATQTRKVEDLARISLKK----EPLYVGVDDDKANA---TVD------GLEQGYVVCPSEKRFLLLFTFLKKNRK-----KKLMVFFSSCMSVKYHYELLNYI--------DLP--------------VLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQS-------KVPL-SEFDFSWSKISDIQSQ----------------LEKLIEKNYFLHKSAQEAYKSYIRAYDSHS--LKQIFNVNNLNLPQVALSFGFKVPP 619
BLAST of RNA helicase vs. Ensembl Celegans
Match: B0511.6 (RNA helicase [Source:UniProtKB/TrEMBL;Acc:O61815]) HSP 1 Score: 238.81 bits (608), Expect = 5.695e-69 Identity = 168/501 (33.53%), Postives = 257/501 (51.30%), Query Frame = 3
Query: 873 MKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKL---SNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLAL-KNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARA-GSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETP 2360
+ T T IQ K+I PLL GKDVL + TGSGKTL++ +P I L ++ + +G I++SPTREL++QT VL++L SN + G+++GG +K L KG++IL++TP RLL HL+ ++ + N++ LIIDEADRI ++G+ ++QV+ + KQR Q++L SAT + V+ L LAL NPVR V EE V+ GLQ +V P+ R++ L + T KV+VF ++ + V+FH++L + ID + +HG + KR F F G LL TDV +RGLD+ ++W+VQY P P +YIHRVGRTAR GKALL L+P E+ ++ +L+ + KV+L E + ++++ LE+ +S + L A+ YK +R+Y S ++ F ++ L V+KS P
Sbjct: 86 LGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLN--WKQHNGTGVIIVSPTRELSMQTYGVLSELLEGSN----LTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQR-----QSMLFSATHSPKVDELVKLALHSNPVRVSVHE--------KAEEATVE------GLQQGYIVAPSDKRLLLLFT-----FLKKNKTKKVMVFFSSCNSVKFHHELLNY------------------ID----IPCMSIHGKQKQQKRTTTFFQFCQAETGILLCTDVAARGLDIPAVDWIVQYDPTDEPREYIHRVGRTARGTNGSGKALLVLRPEELGFLRYLKAA-------KVTLNE-FEFSWSKVANIQSQ----------------LENLISKNYYLNKSAKEAYKCYLRAYD--SHSLKDIFDVTNMDLTAVSKSFGFSVPP 508
BLAST of RNA helicase vs. Ensembl Celegans
Match: T26G10.1 (Putative ATP-dependent RNA helicase T26G10.1 [Source:UniProtKB/Swiss-Prot;Acc:P34580]) HSP 1 Score: 187.193 bits (474), Expect = 4.560e-51 Identity = 132/419 (31.50%), Postives = 209/419 (49.88%), Query Frame = 3
Query: 810 DKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTG-KVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVG 2063
+KSF + P + R+ + IQ+ A+P L GKDV+ + TGSGKT ++AIP++ SL +D P + +V++PTRELA Q L + + ++ +++GGV M Q AL + +I+++TP RL+ HLE ++G L L++LI+DEADRI + + + ++++ I ++R +T L SAT+TK V L +L++P R V+ + VD+ QHY+ V P K + L+ L +H G +VF AT V LR +Q +P LHG M +KR F + + L+ TDV +RGLD+ ++ V+ Y P DY+HRVGRTARAG G A+ + +V ++ ++G
Sbjct: 43 EKSFAELGVSQP--LCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSL--LDHP----QAFFCLVLTPTRELAFQIGQQFEALGSG-IGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRER-----RTYLFSATMTKKVSKLERASLRDPARVS----------VSSRYKTVDNLK-----QHYIFV-PNKYKETYLVYLL------NEHAGNSAIVFCATCATT----MQIAVMLRQLG-MQAVP-----------------LHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLG 403
BLAST of RNA helicase vs. Ensembl Celegans
Match: Y23H5B.6 (RNA helicase [Source:UniProtKB/TrEMBL;Acc:A0A061ACL9]) HSP 1 Score: 177.178 bits (448), Expect = 4.898e-46 Identity = 119/382 (31.15%), Postives = 191/382 (50.00%), Query Frame = 3
Query: 882 TISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAE 2027
T T IQ I L G DV+ + TGSGKTL+ IP++ +L + + G+ A++ISPTRELA+QT + + G++IGG + ++ + G+NI++ TP RLL H++++ + ++LQ L++DEADR+ ++G+++ + ++ + +RQ T+L SAT T+ V++L + +PV V+ E A S + P L+ ++ + ++ AL SF+ K +VF+++ F + F L LP + L G M KR F F A L+ TDV SRGLD I+WV+Q P DYIHRVGR+AR G +LL + P++
Sbjct: 97 TKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALWR--AKWSPDYGLGALIISPTRELALQTFSTINAVGAHH-GFSCGLVIGGSDVAFERNRI-SGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQ-----TLLFSATQTRNVKDLCRVCTNDPV------------FVSVHENA--SAATPDNLKQSYVIVEEEHKINALWSFI-----EAHRKKKSLVFVSSCKQARFLTEAFS------QLRPGLP--------------VMGLWGTMNQKKRIETFTKFDESKAAVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQ 430
BLAST of RNA helicase vs. Ensembl Celegans
Match: ZK512.2 (Probable ATP-dependent RNA helicase DDX55 homolog [Source:UniProtKB/Swiss-Prot;Acc:P34640]) HSP 1 Score: 174.866 bits (442), Expect = 4.939e-46 Identity = 138/497 (27.77%), Postives = 239/497 (48.09%), Query Frame = 3
Query: 921 LLNGKDVLIKSATGSGKTLSYAIPLINSLQ--AIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPF---VRIVTGMLIGGVKMQIQKKALR-KGLNILISTPNRLLYHLEKSEGL---KLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFC-YRDLHLGHVAKSMACMETP--REISR 2375
LLN DV+++S TGSGKTL++ +P++ +Q + P + + A+++SP+REL Q V+ PF + + + GG K+ K + K +NIL++TP RL ++ + L K+ LQ L+IDEADR E+ + +++R+++ I KQR+ T L SAT K ++L L+N + +V + N P L++Y + C + L F+ + K+++F + + V + Y++F L + L F +HG + R + + FS + G +++TDV +RG+D+S I+WV+Q+ P + ++HR GRTAR G +G AL+ + ++ Y+N L +KV L + T +RKS L K+++ VS IL++ G ++ V ++K C DL++ +A S A + P RE+S+
Sbjct: 43 LLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAKLQP-----ADIGALILSPSRELCSQIVSVI----QPFAEKLNLTVETVTGGQKVDKNIKMFKNKNVNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQRR-----TGLFSATQVKEEDDLMVFGLRNAKQVKV---AQERNSAAPS-----------TLKNYYVECRADEKTSVCLEFI-----RQRTDKKILIFFPSCNSVRYFYKIFERCLGKRPL--------------------FAVHGKCSNPHRASQIKAFSDSTNGVMISTDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALILIASEQLAYVNFLDNH------EKVKLDEI------KVPTNNSRKSEE-------LRQKMIKIQVSDRAILEA----GTRAFVSHVESYAKHDCHLICSLDDLNVVGLANSYALLRLPKMRELSQ 463
BLAST of RNA helicase vs. Ensembl Celegans
Match: Y94H6A.5 (ATP-dependent RNA helicase [Source:UniProtKB/TrEMBL;Acc:Q688Z3]) HSP 1 Score: 172.555 bits (436), Expect = 3.501e-44 Identity = 121/393 (30.79%), Postives = 197/393 (50.13%), Query Frame = 3
Query: 891 TAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNP--VRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVG 2063
T IQ K IP +++GKDV+ S TGSGKT ++ IP++ L+ D +G+ A+++SPTRELA+QT V+ +L F + L+GG +++ Q + + +IL++TP RLL H+ L+L+ +Q+++ DEADR+ E+G+ + + + +++I ES QT+L SATL K + + A L +P VR +VD E+ D SM +C ++ ALL + K T VVF AT VE+ + H +D ++ ++ R+ + F L+ TDV +RG+D+ ++ V+ H P ++HRVGR ARAG G A+ + E+ Y+ L +G
Sbjct: 48 TPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLKRRDT-----TGIRALMVSPTRELALQTFKVVKELGR-FTGLRCACLVGGDQIEEQFSTIHENPDILLATPGRLL-HVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIP-----ESRQTLLFSATLPKMLVDFAKAGLTDPMLVRLDVD------------EKVSDKLSM------VFCMCRPDEKLFALLHLCRRMDRENKQT---VVFCATMKHVEYVVGILH----------------------RAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLTDLFMFLG 385
BLAST of RNA helicase vs. Ensembl Fly
Match: CG8611 (gene:FBgn0027602 transcript:FBtr0074440) HSP 1 Score: 386.341 bits (991), Expect = 1.567e-119 Identity = 221/545 (40.55%), Postives = 309/545 (56.70%), Query Frame = 3
Query: 837 LHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQR------QLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNP--------------------------EEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQE-----LPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETP 2360
LHPH +K L D + I T++Q+K IP +L GKDVL++S TGSGKTL+YA+PL+ LQ P I R+ GV A+VI PTREL +QT +++ KL P+ IV G L+GG + +K LRKG+NILI TP RL+ HL + KL LQ+LI+DEADR+ ELGY +V+Q++E I KQR +L LQ +L+SATLT V+ LAGL LKNP+ YI + + +E+ S+P LQ +V P KLR+VAL S L + K +VFM+T ++V FH+ + + L + L +E + D+ +I + F+LHG M +RQ VFR F C++ LL TDV RG+D+ I VVQY PP D++HRVGRTARAG KG+A+LFL P+E ++ HL+ + IQ+ + + ++T L RT + A + + F T LLED D L + + S ++ Y+ F KE++ F R H+GH AKS A E P
Sbjct: 334 LHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPL-----YIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQFVRHLEKKR--IRIQQGDMYAYLQTLLPKDDEARTVQEAASNLQHKFQT--LLED----DRELHDKSCKAFVSWMKFYSTFPKELKPIFNVRIAHMGHFAKSFALKEAP 865
BLAST of RNA helicase vs. Ensembl Fly
Match: CG8611 (gene:FBgn0027602 transcript:FBtr0074439) HSP 1 Score: 386.341 bits (991), Expect = 1.702e-119 Identity = 221/545 (40.55%), Postives = 309/545 (56.70%), Query Frame = 3
Query: 837 LHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQR------QLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNP--------------------------EEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQE-----LPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETP 2360
LHPH +K L D + I T++Q+K IP +L GKDVL++S TGSGKTL+YA+PL+ LQ P I R+ GV A+VI PTREL +QT +++ KL P+ IV G L+GG + +K LRKG+NILI TP RL+ HL + KL LQ+LI+DEADR+ ELGY +V+Q++E I KQR +L LQ +L+SATLT V+ LAGL LKNP+ YI + + +E+ S+P LQ +V P KLR+VAL S L + K +VFM+T ++V FH+ + + L + L +E + D+ +I + F+LHG M +RQ VFR F C++ LL TDV RG+D+ I VVQY PP D++HRVGRTARAG KG+A+LFL P+E ++ HL+ + IQ+ + + ++T L RT + A + + F T LLED D L + + S ++ Y+ F KE++ F R H+GH AKS A E P
Sbjct: 333 LHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPL-----YIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQFVRHLEKKR--IRIQQGDMYAYLQTLLPKDDEARTVQEAASNLQHKFQT--LLED----DRELHDKSCKAFVSWMKFYSTFPKELKPIFNVRIAHMGHFAKSFALKEAP 864
BLAST of RNA helicase vs. Ensembl Fly
Match: CG8611 (gene:FBgn0027602 transcript:FBtr0340619) HSP 1 Score: 358.221 bits (918), Expect = 2.659e-110 Identity = 203/491 (41.34%), Postives = 283/491 (57.64%), Query Frame = 3
Query: 837 LHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQR------QLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNP--------------------------EEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQE-----LPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLED 2198
LHPH +K L D + I T++Q+K IP +L GKDVL++S TGSGKTL+YA+PL+ LQ P I R+ GV A+VI PTREL +QT +++ KL P+ IV G L+GG + +K LRKG+NILI TP RL+ HL + KL LQ+LI+DEADR+ ELGY +V+Q++E I KQR +L LQ +L+SATLT V+ LAGL LKNP+ YI + + +E+ S+P LQ +V P KLR+VAL S L + K +VFM+T ++V FH+ + + L + L +E + D+ +I + F+LHG M +RQ VFR F C++ LL TDV RG+D+ I VVQY PP D++HRVGRTARAG KG+A+LFL P+E ++ HL+ + IQ+ + + ++T L RT + A + + F T LLED
Sbjct: 334 LHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPL-----YIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQFVRHLEKK--RIRIQQGDMYAYLQTLLPKDDEARTVQEAASNLQHKFQT--LLED 815
BLAST of RNA helicase vs. Ensembl Fly
Match: pit (gene:FBgn0266581 transcript:FBtr0084174) HSP 1 Score: 264.618 bits (675), Expect = 5.572e-77 Identity = 176/500 (35.20%), Postives = 267/500 (53.40%), Query Frame = 3
Query: 873 MKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIP---LINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTAR-AGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETP 2360
M T T IQ K++ PLL G+D++ + TGSGKTL++ IP LIN L+ + +G I+ISPTREL++QT VL +L G+++GG Q++ + L KG+NIL++TP RLL HL+ S NLQ LIIDE DRI E+G+ E ++Q++ + K+R QT+L SAT T +E L+ LALK +E Y+G + N + VD GL+ +VCP++ R++ L +FL K KV+VF ++ V++H++LF+ +LP T +HG + KR F F +G LL TDV +RGLD+ ++W+VQY PP +P +YIHRVGRTAR +G+ G ALL ++P E+ ++ +L+ + L+ + S + + + L LE ++ + L A+ +KS VR+Y S +++Q F L L VAKS + P
Sbjct: 205 MGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMP-----RNGTGVIIISPTRELSMQTFGVLKELMAHHHH-TYGLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRR-----QTMLFSATQTARIEALSKLALK----SEPIYVGVHD---NQDTATVD------GLEQGYIVCPSEKRLLVLFTFLKKNRK-----KKVMVFFSSCMSVKYHHELFNYI--------DLPVTS--------------IHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLRYLKAAKVPLNEFEFSWQKIADIQLQ------------------------LEKLIAKNYFLNQSAKEAFKSYVRAYD--SHQLKQIFNVNTLDLQAVAKSFGFLVPP 627
BLAST of RNA helicase vs. Ensembl Fly
Match: pit (gene:FBgn0266581 transcript:FBtr0346345) HSP 1 Score: 264.618 bits (675), Expect = 5.572e-77 Identity = 176/500 (35.20%), Postives = 267/500 (53.40%), Query Frame = 3
Query: 873 MKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIP---LINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTAR-AGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETP 2360
M T T IQ K++ PLL G+D++ + TGSGKTL++ IP LIN L+ + +G I+ISPTREL++QT VL +L G+++GG Q++ + L KG+NIL++TP RLL HL+ S NLQ LIIDE DRI E+G+ E ++Q++ + K+R QT+L SAT T +E L+ LALK +E Y+G + N + VD GL+ +VCP++ R++ L +FL K KV+VF ++ V++H++LF+ +LP T +HG + KR F F +G LL TDV +RGLD+ ++W+VQY PP +P +YIHRVGRTAR +G+ G ALL ++P E+ ++ +L+ + L+ + S + + + L LE ++ + L A+ +KS VR+Y S +++Q F L L VAKS + P
Sbjct: 205 MGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMP-----RNGTGVIIISPTRELSMQTFGVLKELMAHHHH-TYGLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRR-----QTMLFSATQTARIEALSKLALK----SEPIYVGVHD---NQDTATVD------GLEQGYIVCPSEKRLLVLFTFLKKNRK-----KKVMVFFSSCMSVKYHHELFNYI--------DLPVTS--------------IHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLRYLKAAKVPLNEFEFSWQKIADIQLQ------------------------LEKLIAKNYFLNQSAKEAFKSYVRAYD--SHQLKQIFNVNTLDLQAVAKSFGFLVPP 627
BLAST of RNA helicase vs. Ensembl Zebrafish
Match: ddx31 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-030131-3973]) HSP 1 Score: 384.415 bits (986), Expect = 4.591e-121 Identity = 200/545 (36.70%), Postives = 338/545 (62.02%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPE---EEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHS-----GTLRTRKSAHTIEESIFLTAKLL----EDHV-SSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRN 2390
E VF+ +FE+ + LHPHL+ TL + ++ T++Q++ IP L++GKD +++S TGSGKTL+Y IP++ LQAI P + R G A+VI PTRELA+Q+ + KL PF IV G+L+GG K + +K LRKG+N+LISTP RL+ H++ + + + ++WLI+DEADRI +LG+ +++ ++ + Q VL+SAT+T+G+ LA +++K+PV V + P+ + DS+++P LQ +++V P+KL +V L +F+L KCK+ + K+++F+++ + VEF LF ++L E+P+ NT ++ ++ ++LHG M ++R VF+ FS C G LL TDV +RGLD+ + W+VQY+PP + +Y+HRVGRTAR G++G +LLFL P+E +++ L + + ++ + ++ T + G +++SA E+ + A LL E++V +S+ LQ+ A++ + +R+YT + ++ F R LHLGH AKS + P+ ++ + + N
Sbjct: 148 EKVFTSNTFEELN-LHPHLVATLHKVLNVSSMTSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQFLQAIQPKVKRSDGPLAVVIVPTRELALQSFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRKGINVLISTPGRLVDHIKNTLSIAFSAVRWLILDEADRILDLGFEKDLTVILNALNAAG--PDRQNVLLSATITEGLSRLASISMKDPVSVHVSEGSEETVEACPQAAPQALSDSYAVPERLQQHVVVVPSKLHLVCLAAFILAKCKF-EQRQKLIIFISSCEAVEFLLNLF------TAVLCEIPS--NTSSKSTSCLNFYRLHGNMRQEERTEVFQEFSQCKTGILLCTDVAARGLDLPQVTWIVQYNPPVSAAEYVHRVGRTARIGAQGSSLLFLTPSETAFVDVLANH--NISLSEMKMVDILSTLMKDERFKGRGKWDSKRSADAFEQEVRERATLLQTDFENYVHASNESLQT-AKSALQCFLRAYTTYPSSLKHIFHIRMLHLGHAAKSFGLRDAPQGLASSISTN 677
BLAST of RNA helicase vs. Ensembl Zebrafish
Match: BX510918.1 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:NCBI gene;Acc:325248]) HSP 1 Score: 358.992 bits (920), Expect = 1.577e-111 Identity = 192/545 (35.23%), Postives = 329/545 (60.37%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPE---EEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHS-----GTLRTRKSAHTIEESIFLTAKLL----EDHV-SSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRN 2390
E VF+ +FE+ + LHPHL+ TL + ++ T++Q++ IP L++GKD +++S TGSGKTL+Y IP++ LQAI P + +LA+Q+ + KL PF IV G+L+GG K + +K LRKG+N+LISTP RL+ H++ + + + ++WLI+DEADRI +LG+ +++ ++ + Q VL+SAT+T+G+ LA +++K+PV V + P+ + DS+++P LQ +++V P+KL +V L +F+L KCK+ + K+V+F+++ + VEF LF ++L E+P+ NT ++ ++ ++LHG M ++R VF+ FS C G LL TDV +RGLD+ + W+VQY+PP + +Y+HRVGRTAR G++G +LLFL P+E +++ L + + ++ + ++ T + G +++SA E+ + A LL E++V +S+ LQ+ A++ + +R+YT + ++ F R LHLGH AKS + P+ ++ + + N
Sbjct: 148 EKVFTSNTFEELN-LHPHLVATLHKVLNVSSMTSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQFLQAIQPKVK------------ASQLALQSFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRKGINVLISTPGRLVDHIKNTLSIAFSAVRWLILDEADRILDLGFEKDLTVILNALNTAGPYR--QNVLLSATITEGLSRLASISMKDPVSVHVSEGSEETVEACPQAAPQALSDSYAVPERLQQHVVVVPSKLHLVCLAAFILAKCKF-EQRQKLVIFISSCEAVEFLLNLF------TAVLCEIPS--NTSSKSTSCLNFYRLHGNMRQEERTEVFQEFSQCKTGILLCTDVAARGLDLPQVTWIVQYNPPVSAAEYVHRVGRTARIGAQGSSLLFLTPSETAFVDVLANH--NISLSEMKMVDILSTLMKDERFKGRGKWDSKRSADAFEQEVRERATLLQTDFENYVHASNESLQT-AKSALQCFLRAYTTYPSSLKHIFHIRMLHLGHAAKSFGLRDAPQGLASSISTN 665
BLAST of RNA helicase vs. Ensembl Zebrafish
Match: CR381654.1 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:NCBI gene;Acc:325248]) HSP 1 Score: 358.607 bits (919), Expect = 2.301e-111 Identity = 192/545 (35.23%), Postives = 329/545 (60.37%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPE---EEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHS-----GTLRTRKSAHTIEESIFLTAKLL----EDHV-SSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRN 2390
E VF+ +FE+ + LHPHL+ TL + ++ T++Q++ IP L++GKD +++S TGSGKTL+Y IP++ LQAI P + +LA+Q+ + KL PF IV G+L+GG K + +K LRKG+N+LISTP RL+ H++ + + + ++WLI+DEADRI +LG+ +++ ++ + Q VL+SAT+T+G+ LA +++K+PV V + P+ + DS+++P LQ +++V P+KL +V L +F+L KCK+ + K+V+F+++ + VEF LF ++L E+P+ NT ++ ++ ++LHG M ++R VF+ FS C G LL TDV +RGLD+ + W+VQY+PP + +Y+HRVGRTAR G++G +LLFL P+E +++ L + + ++ + ++ T + G +++SA E+ + A LL E++V +S+ LQ+ A++ + +R+YT + ++ F R LHLGH AKS + P+ ++ + + N
Sbjct: 148 EKVFTSNTFEELN-LHPHLVATLHKVLNVSSMTSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQFLQAIQPKVK------------ASQLALQSFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRKGINVLISTPGRLVDHIKNTLSIAFSAVRWLILDEADRILDLGFEKDLTVILNALNTAG--PDRQNVLLSATITEGLSRLASISMKDPVSVHVSEGSEETVEACPQAAPQALSDSYAVPERLQQHVVVVPSKLHLVCLAAFILAKCKF-EQRQKLVIFISSCEAVEFLLNLF------TAVLCEIPS--NTSSKSTSCLNFYRLHGNMRQEERTEVFQEFSQCKTGILLCTDVAARGLDLPQVTWIVQYNPPVSAAEYVHRVGRTARIGAQGSSLLFLTPSETAFVDVLANH--NISLSEMKMVDILSTLMKDERFKGRGKWDSKRSADAFEQEVRERATLLQTDFENYVHASNESLQT-AKSALQCFLRAYTTYPSSLKHIFHIRMLHLGHAAKSFGLRDAPQGLASSISTN 665
BLAST of RNA helicase vs. Ensembl Zebrafish
Match: ddx31 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-030131-3973]) HSP 1 Score: 351.288 bits (900), Expect = 9.388e-109 Identity = 190/545 (34.86%), Postives = 326/545 (59.82%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPE---EEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHS-----GTLRTRKSAHTIEESIFLTAKLL----EDHV-SSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRN 2390
E VF+ +FE+ + LHPHL+ TL + ++ T++Q++ IP L++GKD +++S TGSGKTL+Y IP++ LQAI P + R G A+VI PTRELA+Q+ + KL PF IV G+L+GG K + +K LRKG+N+LISTP RL+ H++ + + + ++WLI+DEADRI +LG+ +++ ++ + Q VL+SAT+T+G+ LA +++K+PV V + P+ + DS+++P LQ +++V P+KL +V L +F+L KCK+ + K+++F+++ + VEF LF ++L E+P+ NT ++ ++ ++LHG M + DV +RGLD+ + W+VQY+PP + +Y+HRVGRTAR G++G +LLFL P+E +++ L + + ++ + ++ T + G +++SA E+ + A LL E++V +S+ LQ+ A++ + +R+YT + ++ F R LHLGH AKS + P+ ++ + + N
Sbjct: 148 EKVFTSNTFEELN-LHPHLVATLHKVLNVSSMTSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQFLQAIQPKVKRSDGPLAVVIVPTRELALQSFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRKGINVLISTPGRLVDHIKNTLSIAFSAVRWLILDEADRILDLGFEKDLTVILNALNAAG--PDRQNVLLSATITEGLSRLASISMKDPVSVHVSEGSEETVEACPQAAPQALSDSYAVPERLQQHVVVVPSKLHLVCLAAFILAKCKF-EQRQKLIIFISSCEAVEFLLNLF------TAVLCEIPS--NTSSKSTSCLNFYRLHGNMRQE--------------------DVAARGLDLPQVTWIVQYNPPVSAAEYVHRVGRTARIGAQGSSLLFLTPSETAFVDVLANH--NISLSEMKMVDILSTLMKDERFKGRGKWDSKRSADAFEQEVRERATLLQTDFENYVHASNESLQT-AKSALQCFLRAYTTYPSSLKHIFHIRMLHLGHAAKSFGLRDAPQGLASSISTN 657
BLAST of RNA helicase vs. Ensembl Zebrafish
Match: ddx18 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Source:ZFIN;Acc:ZDB-GENE-030131-9685]) HSP 1 Score: 259.225 bits (661), Expect = 4.507e-75 Identity = 203/635 (31.97%), Postives = 311/635 (48.98%), Query Frame = 3
Query: 459 VLKEQKTQLSDEVSFNKFSQLKDQSINNKKDLVEQIKNSESHVDDTKQNLINASQPHTKSHQQNNIDSKKHLKNYNTIDNKNKNPKSTLDLDEDANIKDMEKFLSSTKGVNSEPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARA-GSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETP 2360
V++EQ+ +SDEV N+ SQ + +K L +++ S V K+ + +Q S + + +L+ +N N + + + D D +D + S G F D+SF SE+ M T IQ K I PLL G+DVL + TGSGKTL++ IP I + + +G IV+SPTRELA+QT VL +L V G+++GG + + L G+NIL++TP RLL HL+ + G NLQ LIIDEADRI E+G+ E ++Q+++ + K+R Q++L SAT T+ VE+LA ++LK E Y+G +N E GL+ +VCP++ R + L +FL K K++VF ++ V+FHY+L + +LP + +HG + KR F F +G LL TDV +RGLD+ ++W+VQ+ PP +P +YIHRVGRTAR +G ALL L+P E+ ++ L+ + KV L S E + ++++ L+ + + L A+ YKS VR+Y S ++Q + L L VA S P
Sbjct: 55 VIEEQQQSVSDEV--NETSQKPKKKKKKRK-LDTTGESTTSSVKKAKKQSVETTQA---SAGEEEQQEEGNLETVKCPENGNNEKEGSAEEDSD---EDGPQLPSGLTGA-----FEDRSFASLSEVVSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLK--FMPRNGTGVIVLSPTRELAMQTYGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKR-----QSMLFSATQTRKVEDLARISLKK----EPLYVGVDDNKDTATVE---------GLEQGYVVCPSEKRFLLLFTFLKKNRK-----KKLMVFFSSCMSVKFHYELLNYI--------DLP--------------VMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELGFLRFLKQA-------KVPL-SEFEFSWTKISDIQSQ----------------LDKLIEKNYYLHKSAQEAYKSYVRAYDSHS--LKQIYNVETLDLPKVAMSFGFKVPP 601
BLAST of RNA helicase vs. Ensembl Xenopus
Match: DDX31 (DEAD-box helicase 31 [Source:NCBI gene;Acc:100492953]) HSP 1 Score: 324.709 bits (831), Expect = 1.966e-99 Identity = 201/550 (36.55%), Postives = 300/550 (54.55%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITIST--AIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEV--DYIGKPNNIVNPEEEAVDS----FSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHL---QTSVGGLHIQKVSLRSVMETALH----------HSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARN-GYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRN 2378
E VFS SF LHPHL+ T++ M +T +T +Q++ IP LL G+DVL++S TGSGKT++Y +PL+ SLQ + P I R G YA+V+ PTRELA+Q+ + KL PF IV G+L+GG K + +K LRKG+NILISTP RLL H+ ++ + +WL++DEADRI ++G+ ++V ++ + Q Q Q VL+SATL+ GV LA ++L +PV + D + + P+E+ D F+MP L + +V P+KL++V L +F+L K K KV + +A LR+ L F LH ++ + VF+ F+ C AG LL TDV +RGLD+ + W+VQ+ P + +YIHRVGRTAR G++G +LL L P+E Y+ L + SV + ++ + +ME L G ++ + ES+ L + V +L L R+ +S +RSY + K ++ F R LHLGHVAKS + P +SR
Sbjct: 118 EKVFSADSFSDLG-LHPHLVSTINTVMNMTNTTRYVVQKQTIPALLAGRDVLVRSQTGSGKTMAYGVPLVQSLQGVTPKIQRSDGPYALVLVPTRELALQSFSTIQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLLDHIRSTKSIHFTRARWLVVDEADRILDMGFEKDVTAILNALNSQCQHR--QNVLLSATLSPGVARLADISLNDPVSVTIAEDTNREDKHGGKPKEDKKDGDSSCFAMPEKLHQHAVVAPSKLKLVTLAAFILGKWKVRARV-KVAIQIA--------------ILRSHPPL------------------TFYLHLTIQTE----VFQQFTHCQAGILLCTDVAARGLDLPQVTWIVQFSAPASAAEYIHRVGRTARLGAQGSSLLILIPSEAAYLQTLAEHKISVSEMKMEDILSNLLMEDFLKIRRAGGKLRGAGGGREKKRQRERVGESV--REGWLANQVK---VLNYLYRSVTLQSYIRSYATYPKNLKHIFHIRSLHLGHVAKSFGLRDAPHSLSRQ 622
BLAST of RNA helicase vs. Ensembl Xenopus
Match: DDX31 (DEAD-box helicase 31 [Source:NCBI gene;Acc:100492953]) HSP 1 Score: 308.916 bits (790), Expect = 4.403e-95 Identity = 188/520 (36.15%), Postives = 279/520 (53.65%), Query Frame = 3
Query: 873 MKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEV--DYIGKPNNIVNPEEEAVDS----FSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHL---QTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQ 2405
M +T +T++Q++ IP LL G+DVL++S TGSGKT++Y +PL+ SLQ + P I R G YA+V+ PTRELA+Q+ + KL PF IV G+L+GG K + +K LRKG+NILISTP RLL H+ ++ + +WL++DEADRI ++G+ ++V ++ + Q Q Q VL+SATL+ GV LA ++L +PV + D + + P+E+ D F+MP L + +V P+KL++V L +F+L K K KV + +A LR+ L F LH ++ + VF+ F+ C AG LL TDV +RGLD+ + W+VQ+ P + +YIHRVGRTAR G++G +LL L P+E Y+ L + SV + ++ + +ME FL + D IL +L S +RSY + K ++ F R LHLGHVAKS + P +SR P Q
Sbjct: 1 MNMTNTTSVQKQTIPALLAGRDVLVRSQTGSGKTMAYGVPLVQSLQGVTPKIQRSDGPYALVLVPTRELALQSFSTIQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLLDHIRSTKSIHFTRARWLVVDEADRILDMGFEKDVTAILNALNSQCQHR--QNVLLSATLSPGVARLADISLNDPVSVTIAEDTNREDKHGGKPKEDKKDGDSSCFAMPEKLHQHAVVAPSKLKLVTLAAFILGKWKVRARV-KVAIQIA--------------ILRSHPPL------------------TFYLHLTIQTE----VFQQFTHCQAGILLCTDVAARGLDLPQVTWIVQFSAPASAAEYIHRVGRTARLGAQGSSLLILIPSEAAYLQTLAEHKISVSEMKMEDILSNLLMED---------------------FLKIRRAGGKRGGD-ILTALW-----SYIRSYATYPKNLKHIFHIRSLHLGHVAKSFGLRDAPHSLSRQLA-GSPSKQ 453
BLAST of RNA helicase vs. Ensembl Xenopus
Match: ddx55 (DEAD-box helicase 55 [Source:NCBI gene;Acc:100145293]) HSP 1 Score: 223.787 bits (569), Expect = 1.034e-62 Identity = 164/517 (31.72%), Postives = 261/517 (50.48%), Query Frame = 3
Query: 834 ELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVK-MQIQKKALRKGLNILISTPNRLLYHLEK-SEGLKL----NNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSK-EMRQFFCYRDLHLGHVAKSMACMETPR 2363
+L+ + +TLS+ +K T T +Q IP +N KD+ ++ TGSGKTL++ IPL+ L + + +++ V AI+I+PTRELAVQ +VL+ + F + +LIGG + K G NI+++TP RL + ++GL L L LI+DEADR+ ++G+ ++ ++ + KQR+ T L SAT T+ +ENL L+NPVR V G A + PI LQ+Y ++C + L++FL + K KH +VF +T VE++ + L+N V + +HG M+H KR +F F ++G L+ TDV +RG+D+ +NWVVQY PP + ++HR GRTAR G G AL+FL P E +Y++ L + QK L+ + E + ++ L K L+ SD +++ G K+ V ++K E F +DL ++A+ + PR
Sbjct: 15 KLNSSIRQTLSE-LKFTHMTPVQSATIPLFMNNKDIAAEAITGSGKTLAFVIPLLEILLKREEKL-KKNQVGAIIITPTRELAVQIDEVLSYFTKHFPQFSQILLIGGSNPVDDVMKFKEHGGNIIVATPGRLEDMFRRQADGLDLVSYVKTLDVLILDEADRLLDMGFEASINTILGFLPKQRR-----TGLFSATQTQELENLVRAGLRNPVRIAVKEKGVA---------ATCTQKTPIRLQNYYMICKADEKFNKLVAFLQQR-KQEKH----LVFFSTCACVEYYGKALEALLKN--------------------VKVMCIHGKMKH-KRNRIFTEFRKLNSGILVCTDVMARGIDIPEVNWVVQYDPPSSASAFVHRCGRTARIGHHGSALVFLLPMEESYVSFLSIN------QKCPLQEMTE-----------------LISAVDLLPK-LKSMAESD---RAVFEKGMKAFVSYVQAYAKHECNLIFRVKDLDFSNLARGFGLLRMPR 462
BLAST of RNA helicase vs. Ensembl Xenopus
Match: ddx55 (DEAD-box helicase 55 [Source:NCBI gene;Acc:100145293]) HSP 1 Score: 223.787 bits (569), Expect = 1.300e-62 Identity = 164/517 (31.72%), Postives = 261/517 (50.48%), Query Frame = 3
Query: 834 ELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVK-MQIQKKALRKGLNILISTPNRLLYHLEK-SEGLKL----NNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSK-EMRQFFCYRDLHLGHVAKSMACMETPR 2363
+L+ + +TLS+ +K T T +Q IP +N KD+ ++ TGSGKTL++ IPL+ L + + +++ V AI+I+PTRELAVQ +VL+ + F + +LIGG + K G NI+++TP RL + ++GL L L LI+DEADR+ ++G+ ++ ++ + KQR+ T L SAT T+ +ENL L+NPVR V G A + PI LQ+Y ++C + L++FL + K KH +VF +T VE++ + L+N V + +HG M+H KR +F F ++G L+ TDV +RG+D+ +NWVVQY PP + ++HR GRTAR G G AL+FL P E +Y++ L + QK L+ + E + ++ L K L+ SD +++ G K+ V ++K E F +DL ++A+ + PR
Sbjct: 18 KLNSSIRQTLSE-LKFTHMTPVQSATIPLFMNNKDIAAEAITGSGKTLAFVIPLLEILLKREEKL-KKNQVGAIIITPTRELAVQIDEVLSYFTKHFPQFSQILLIGGSNPVDDVMKFKEHGGNIIVATPGRLEDMFRRQADGLDLVSYVKTLDVLILDEADRLLDMGFEASINTILGFLPKQRR-----TGLFSATQTQELENLVRAGLRNPVRIAVKEKGVA---------ATCTQKTPIRLQNYYMICKADEKFNKLVAFLQQR-KQEKH----LVFFSTCACVEYYGKALEALLKN--------------------VKVMCIHGKMKH-KRNRIFTEFRKLNSGILVCTDVMARGIDIPEVNWVVQYDPPSSASAFVHRCGRTARIGHHGSALVFLLPMEESYVSFLSIN------QKCPLQEMTE-----------------LISAVDLLPK-LKSMAESD---RAVFEKGMKAFVSYVQAYAKHECNLIFRVKDLDFSNLARGFGLLRMPR 465
BLAST of RNA helicase vs. Ensembl Xenopus
Match: ddx55 (DEAD-box helicase 55 [Source:NCBI gene;Acc:100145293]) HSP 1 Score: 222.631 bits (566), Expect = 2.958e-62 Identity = 164/517 (31.72%), Postives = 261/517 (50.48%), Query Frame = 3
Query: 834 ELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVK-MQIQKKALRKGLNILISTPNRLLYHLEK-SEGLKL----NNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSK-EMRQFFCYRDLHLGHVAKSMACMETPR 2363
+L+ + +TLS+ +K T T +Q IP +N KD+ ++ TGSGKTL++ IPL+ L + + +++ V AI+I+PTRELAVQ +VL+ + F + +LIGG + K G NI+++TP RL + ++GL L L LI+DEADR+ ++G+ ++ ++ + KQR+ T L SAT T+ +ENL L+NPVR V G A + PI LQ+Y ++C + L++FL + K KH +VF +T VE++ + L+N V + +HG M+H KR +F F ++G L+ TDV +RG+D+ +NWVVQY PP + ++HR GRTAR G G AL+FL P E +Y++ L + QK L+ + E + ++ L K L+ SD +++ G K+ V ++K E F +DL ++A+ + PR
Sbjct: 15 KLNSSIRQTLSE-LKFTHMTPVQSATIPLFMNNKDIAAEAITGSGKTLAFVIPLLEILLKREEKL-KKNQVGAIIITPTRELAVQIDEVLSYFTKHFPQFSQILLIGGSNPVDDVMKFKEHGGNIIVATPGRLEDMFRRQADGLDLVSYVKTLDVLILDEADRLLDMGFEASINTILGFLPKQRR-----TGLFSATQTQELENLVRAGLRNPVRIAVKEKGVA---------ATCTQKTPIRLQNYYMICKADEKFNKLVAFLQQR-KQEKH----LVFFSTCACVEYYGKALEALLKN--------------------VKVMCIHGKMKH-KRNRIFTEFRKLNSGILVCTDVMARGIDIPEVNWVVQYDPPSSASAFVHRCGRTARIGHHGSALVFLLPMEESYVSFLSIN------QKCPLQEMTE-----------------LISAVDLLPK-LKSMAESD---RAVFEKGMKAFVSYVQAYAKHECNLIFRVKDLDFSNLARGFGLLRMPR 462
BLAST of RNA helicase vs. Ensembl Mouse
Match: Ddx31 (DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Source:MGI Symbol;Acc:MGI:2682639]) HSP 1 Score: 414.461 bits (1064), Expect = 3.312e-133 Identity = 220/536 (41.04%), Postives = 336/536 (62.69%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEA---VDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLF-HVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQT---SVGGLHIQKVSLRSVMETAL--HHSGTLRTRKSA-HTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREIS 2372
E VFS ++F++ +LHPHLI T++ +K++ T++Q+++IP LL G+D L++S TGSGKTL+Y +P++ SLQA+ I R G YA+V+ PTRELA+Q+ D + KL PF IV G+L+GG K + +K LRKG+NILISTP RL+ H++ ++ L N ++WLI+DEADRI +LG+ +++ ++ + + Q Q VL+SATLT+GV L ++L NPV + + K N NP+E A ++SF++P L ++++ P+KLR+V L +F+L KCK+ K+ K++VF ++ +LVEFHY LF H L + P +++ S + +LHG ME ++R +VF FS G LL TDV SRGLD+ + W+VQY P +P +YIHR+GRTAR G G +LL L P+E Y+N L + +VG + ++ + + G ++R S I E + + ED+V S + S A+ +S +R+Y + KE++ F R LHLGHVAKS + PR +S
Sbjct: 97 EQVFSPEAFQEL-DLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCVPVVQSLQALTSKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNLHFNRIRWLIVDEADRILDLGFEKDITVILNAVNAECQ--KRQNVLLSATLTEGVTRLVDISLHNPV--SISVLDKNCNQPNPKEVASIQLNSFAIPESLDQHVVLVPSKLRLVCLAAFILQKCKFEKNQ-KMIVFFSSCELVEFHYSLFLHTLLCHSG----TPTSEHLP-SASWPLKFLRLHGNMEQEERTSVFHEFSHSETGVLLCTDVASRGLDLPQVTWIVQYSAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVGEIKMEDILAVLAKDDCFKRRQRGAQKSRASGPQEIRERATVLQTVFEDYVHSSQRMVSWAKKALQSFIRAYATYPKELKSIFHVRALHLGHVAKSFGLRDAPRNLS 621
BLAST of RNA helicase vs. Ensembl Mouse
Match: Ddx18 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Source:MGI Symbol;Acc:MGI:1914192]) HSP 1 Score: 256.144 bits (653), Expect = 5.998e-74 Identity = 174/522 (33.33%), Postives = 269/522 (51.53%), Query Frame = 3
Query: 801 VFSDKSFEKYSEL-HPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARA-GSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETP 2360
F D SF S L + + +K + + M T IQ K+I PLL G+D+L + TGSGKTL++ IP+I + + +G +++SPTRELA+QT VL +L V G+++GG + + L G+NI+++TP RLL H++ + G NLQ L+IDEADRI ++G+ E ++Q+++ + +RQ T+L SAT T+ VE+LA ++LK E Y+G ++ E VD GL+ +VCP++ R + L +FL K KV+VF ++ V++HY+L + +LP + +HG + +KR F F +G LL TDV +RGLD+ ++W+VQY PP +P +YIHRVGRTAR +G ALL L+P E+ ++ +L+ S L+ S V + LE + + L A+ YKS +R+Y S ++Q F +L+L VA S P
Sbjct: 163 AFEDTSFASLSNLVNENTLKAIEE-MGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLK--FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVH-TYGLIMGGSNRSAEVQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQ-----TMLFSATQTRKVEDLARISLKK----EPLYVGVDDD---KEVATVD------GLEQGYVVCPSEKRFLLLFTFLKKNRK-----KKVMVFFSSCMSVKYHYELLNYI--------DLP--------------VLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLNQFDFSWSKVSDIQSQ------------------------LEKLIEKNYFLHKSAQEAYKSYIRAYDSHS--LKQIFNVNNLNLPQVALSFGFKVPP 609
BLAST of RNA helicase vs. Ensembl Mouse
Match: Ddx55 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Source:MGI Symbol;Acc:MGI:1915098]) HSP 1 Score: 215.312 bits (547), Expect = 1.115e-59 Identity = 161/517 (31.14%), Postives = 253/517 (48.94%), Query Frame = 3
Query: 837 LHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRK-GLNILISTPNRL--LYHLEKSEGLKL----NNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSK-EMRQFFCYRDLHLGHVAKSMACMETPR 2363
LHP ++ L + + T +Q IP + KDV ++ TGSGKTL++ IP++ L + + +++ V AIVI+PTRELA+Q +VL+ + F + + IGG + ++ G NI+++TP RL ++ K+EGL L +L L++DEADR+ ++G+ ++ ++E + KQR+ T L SAT T+ VENL L+NPVR V G A + P L+++ ++C + L+ FL + K +VF +T VE++ + L+ V I +HG M++ KR +F F +G L+ TDV +RG+D+ +NWV+QY PP N ++HR GRTAR G G AL+FL P E YIN L + QK L+ E +L +TI+ L A L D +++ G K+ V ++K E F +DL +A+ A + PR
Sbjct: 16 LHPRVLGALRE-LGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL-KKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVATPGRLEDMFR-RKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRR-----TGLFSATQTQEVENLVRAGLRNPVRISVKEKGVA---------ASSTQKTPSRLENHYMICKADEKFNQLVHFL-----RSRQQEKHLVFFSTCACVEYYGKALEALLKK--------------------VKILCIHGKMKY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEEAYINFLAIN------QKCPLQ---EMSLQR----------NTIDLLPKLRAMALAD--------RAVFEKGMKAFVSFVQAYAKHECSLIFRLKDLDFAGLARGFALLRMPR 462
BLAST of RNA helicase vs. Ensembl Mouse
Match: Ddx55 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Source:MGI Symbol;Acc:MGI:1915098]) HSP 1 Score: 214.542 bits (545), Expect = 1.532e-59 Identity = 157/517 (30.37%), Postives = 250/517 (48.36%), Query Frame = 3
Query: 837 LHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRK-GLNILISTPNRL--LYHLEKSEGLKL----NNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSK-EMRQFFCYRDLHLGHVAKSMACMETPR 2363
LHP ++ L + + T +Q IP + KDV ++ TGSGKTL++ IP++ L + + +++ V AIVI+PTRELA+Q +VL+ + F + + IGG + ++ G NI+++TP RL ++ K+EGL L +L L++DEADR+ ++G+ ++ ++E + KQR+ T L SAT T+ VENL L+NPVR V G A + P L+++ ++C + L+ FL + K +VF +T VE++ + L+ V I +HG M++ KR +F F +G L+ TDV +RG+D+ +NWV+QY PP N ++HR GRTAR G G AL+FL P E YIN L + + +Q+ +TI+ L A L D +++ G K+ V ++K E F +DL +A+ A + PR
Sbjct: 16 LHPRVLGALRE-LGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL-KKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVATPGRLEDMFR-RKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRR-----TGLFSATQTQEVENLVRAGLRNPVRISVKEKGVA---------ASSTQKTPSRLENHYMICKADEKFNQLVHFL-----RSRQQEKHLVFFSTCACVEYYGKALEALLKK--------------------VKILCIHGKMKY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEEAYINFLAINQKEMSLQR-----------------------NTIDLLPKLRAMALAD--------RAVFEKGMKAFVSFVQAYAKHECSLIFRLKDLDFAGLARGFALLRMPR 458
BLAST of RNA helicase vs. Ensembl Mouse
Match: Ddx10 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Source:MGI Symbol;Acc:MGI:1924841]) HSP 1 Score: 213.386 bits (542), Expect = 1.973e-57 Identity = 156/494 (31.58%), Postives = 240/494 (48.58%), Query Frame = 3
Query: 885 ISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRS-YTCFSKEMRQFFCYRDLHLGHVAKSMACMETPR 2363
+ T IQ++ I L GKDVL + TGSGKTL++ +P++ +L + T G+ ++ISPTRELA QT +VL K+ G++IGG ++ + + + +NIL+ TP RLL H++++ NLQ L++DEADRI ++G+A+ + ++E + K+RQ T+L SAT TK V++LA L+LK+P V K +S P L+ ++C ++ L SFL K K +VF ++ V++ L+ VF R + + I LHG + +R V+ F A L TD+ +RGLD +NWV+Q+ P + YIHR GRTAR G+ALL L P+E Q V L +KV ++ + E + K LE ++ D L+ A+ + S +RS Y KE+ F L + A S+ PR
Sbjct: 91 LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ--WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQ-----TLLFSATQTKSVKDLARLSLKDPEYVWVHEKAK--------------YSTPATLEQNYIICELHQKISVLFSFLRSHLK-----KKSIVFFSSCKEVQY---LYRVFCRLRP-----------------GISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEE------QGMVQQLLQKKVPVKEIKINP-----------------EKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMKDKEV---FNVSKLPITEYALSLGLAVAPR 510
BLAST of RNA helicase vs. UniProt/SwissProt
Match: sp|Q6NZQ2|DDX31_MOUSE (Probable ATP-dependent RNA helicase DDX31 OS=Mus musculus OX=10090 GN=Ddx31 PE=2 SV=2) HSP 1 Score: 414.461 bits (1064), Expect = 2.317e-132 Identity = 220/536 (41.04%), Postives = 336/536 (62.69%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEA---VDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLF-HVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQT---SVGGLHIQKVSLRSVMETAL--HHSGTLRTRKSA-HTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREIS 2372
E VFS ++F++ +LHPHLI T++ +K++ T++Q+++IP LL G+D L++S TGSGKTL+Y +P++ SLQA+ I R G YA+V+ PTRELA+Q+ D + KL PF IV G+L+GG K + +K LRKG+NILISTP RL+ H++ ++ L N ++WLI+DEADRI +LG+ +++ ++ + + Q Q VL+SATLT+GV L ++L NPV + + K N NP+E A ++SF++P L ++++ P+KLR+V L +F+L KCK+ K+ K++VF ++ +LVEFHY LF H L + P +++ S + +LHG ME ++R +VF FS G LL TDV SRGLD+ + W+VQY P +P +YIHR+GRTAR G G +LL L P+E Y+N L + +VG + ++ + + G ++R S I E + + ED+V S + S A+ +S +R+Y + KE++ F R LHLGHVAKS + PR +S
Sbjct: 97 EQVFSPEAFQEL-DLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCVPVVQSLQALTSKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNLHFNRIRWLIVDEADRILDLGFEKDITVILNAVNAECQ--KRQNVLLSATLTEGVTRLVDISLHNPV--SISVLDKNCNQPNPKEVASIQLNSFAIPESLDQHVVLVPSKLRLVCLAAFILQKCKFEKNQ-KMIVFFSSCELVEFHYSLFLHTLLCHSG----TPTSEHLP-SASWPLKFLRLHGNMEQEERTSVFHEFSHSETGVLLCTDVASRGLDLPQVTWIVQYSAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVGEIKMEDILAVLAKDDCFKRRQRGAQKSRASGPQEIRERATVLQTVFEDYVHSSQRMVSWAKKALQSFIRAYATYPKELKSIFHVRALHLGHVAKSFGLRDAPRNLS 621
BLAST of RNA helicase vs. UniProt/SwissProt
Match: sp|Q9H8H2|DDX31_HUMAN (Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens OX=9606 GN=DDX31 PE=1 SV=2) HSP 1 Score: 404.06 bits (1037), Expect = 2.087e-126 Identity = 218/547 (39.85%), Postives = 335/547 (61.24%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAV------------DSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKS---LLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQT-SVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHT-----IEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREIS 2372
E VF+ +F + LHPHLI T++ +K++ T++Q+++IP LL G+D L++S TGSGKTL+Y IP++ SLQA++ I R G YA+V+ PTRELA+Q+ D + KL PF IV G+L+GG K + +K LRKG+NILISTP RL+ H++ ++ + + L+WL+ DEADRI +LG+ +++ ++ + + Q Q VL+SATLT+GV LA ++L +PV + + K ++ +NP+++AV DSF++P L+ ++ V P+KLR+V L +F+L KCK+ + K+VVF ++ +LVEFHY LF L + S +LP+ S + +LHGGME ++R AVF+ FS G LL TDV +RGLD+ + W+VQY+ P +P +YIHR+GRTAR G G +LL L P+E Y+N L + + I+ + V+ G + +H I E + + ED+V S S A+ +S +++Y + +E++ F R LHLGHVAKS + PR +S
Sbjct: 224 EKVFTSAAFHELG-LHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKR--QNVLLSATLTEGVTRLADISLHDPV--SISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKF-EEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSA-------SMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIKMEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVSWAKKALQSFIQAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPRNLS 757
BLAST of RNA helicase vs. UniProt/SwissProt
Match: sp|Q86B47|Y8611_DROME (Probable ATP-dependent RNA helicase CG8611 OS=Drosophila melanogaster OX=7227 GN=CG8611 PE=1 SV=1) HSP 1 Score: 386.341 bits (991), Expect = 1.571e-118 Identity = 221/545 (40.55%), Postives = 309/545 (56.70%), Query Frame = 3
Query: 837 LHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQR------QLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNP--------------------------EEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQE-----LPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETP 2360
LHPH +K L D + I T++Q+K IP +L GKDVL++S TGSGKTL+YA+PL+ LQ P I R+ GV A+VI PTREL +QT +++ KL P+ IV G L+GG + +K LRKG+NILI TP RL+ HL + KL LQ+LI+DEADR+ ELGY +V+Q++E I KQR +L LQ +L+SATLT V+ LAGL LKNP+ YI + + +E+ S+P LQ +V P KLR+VAL S L + K +VFM+T ++V FH+ + + L + L +E + D+ +I + F+LHG M +RQ VFR F C++ LL TDV RG+D+ I VVQY PP D++HRVGRTARAG KG+A+LFL P+E ++ HL+ + IQ+ + + ++T L RT + A + + F T LLED D L + + S ++ Y+ F KE++ F R H+GH AKS A E P
Sbjct: 334 LHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPL-----YIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQFVRHLEKKR--IRIQQGDMYAYLQTLLPKDDEARTVQEAASNLQHKFQT--LLED----DRELHDKSCKAFVSWMKFYSTFPKELKPIFNVRIAHMGHFAKSFALKEAP 865
BLAST of RNA helicase vs. UniProt/SwissProt
Match: sp|Q7XJN0|RH17_ARATH (DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana OX=3702 GN=RH17 PE=2 SV=1) HSP 1 Score: 328.946 bits (842), Expect = 1.291e-100 Identity = 203/565 (35.93%), Postives = 306/565 (54.16%), Query Frame = 3
Query: 801 VFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQI----KKQRQLESL-------QTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNI-----VNPEEEAVD--------------SFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTG-KVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDI------FQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTA--KLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRN 2378
+F+ SF L L L +RM T +Q +AIP +L+G+DVL+ + TG+GKT++Y PLI+ LQ P + R G +A+VI PTREL +Q + L KL + F IV G ++GG K +K LRKG++ILI+TP RLL HL+ + NL+W+I DEAD I ELGY + + Q+++ + +Q + + + Q +L+SATL V +LA L+L +PV +D N+ P+ +A D + +P L L P R+VALLS +LK + + KVVVF +T+D V+FHY SLL E N+E ++ + ++ F+LHG ME + R++ F F LL+TDV +RGLD + ++QY PG +Y+HRVGRTAR G KG+ALLFLQP E++Y+ L+ G + + L V++ G + K ++E ++ + + LE ++P ++SLA+N + S VR Y E++ F + LHLGHVAKS A E P + ++
Sbjct: 25 LFASCSFSSLG-LDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLS--VLKNLFEREASQKVVVFFSTRDAVDFHY----------SLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQPIEIDYLKELKKH--GASLTEYPLMKVLDK-FPIPGNMPRIKKVLSLESHPWVISLQRALESLTYAEPKMKSLAKNAFVSWVRGYAAHKGELKSIFVVKKLHLGHVAKSFALREQPSLVGKS 573
BLAST of RNA helicase vs. UniProt/SwissProt
Match: sp|Q0DLB9|RH17_ORYSJ (DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica OX=39947 GN=RH17 PE=2 SV=2) HSP 1 Score: 324.324 bits (830), Expect = 4.514e-99 Identity = 199/564 (35.28%), Postives = 317/564 (56.21%), Query Frame = 3
Query: 789 NSEPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQI--------KKQRQLESL--QTVLISATLTKGVENLAGLALKNPVRAEVD-----YIGKPNN--IVNPEEE-----------AVDSFSMPIGL-QHYLLV-CPTKLRMVALLSFLLLKCKYGKH-TGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPN--TDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKS-AHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRN 2378
+ E +F+ SF LHP L L D+M T IQ +AIP ++G+ +L+K+ATG+GKTL+Y P+++ LQ +P + R G +A+V+ PTREL +Q + +L + F +V G ++GG +K LRKG++ILI+TP RLL HL+ + N++W++ DEAD I ELG+ + + ++E + + + ++E + Q +L+SATL + V LA ++LKNPV +D GK + + + EEE AVD F +P L Q Y+ V C ++L ++ +LK + + + KVVVF++T D V+FH+ + S L+ P D + + S +F+LHG M+ D R+ F FS+ + L++TDV +RGLD + ++QY PG +Y+HRVGRTAR G KG+ALLFLQP E +Y+ L+ + G + + L+ V+++ + L RK + + I + LE V+S+ + LAR+ + S VR+YT E+++ F + LHLGHVA+S E P + R+
Sbjct: 15 DKEGLFASCSFTDLG-LHPTLCAHLQDKMGFQAPTRIQAQAIPVAMSGQHMLVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTFALVLVPTRELCLQVYGIAQQLVHRFHWLVPGYIMGGENRAKEKARLRKGISILIATPGRLLDHLQHTSSFVYPNMRWIVFDEADSILELGFGKALEDILEHLGSRNDTSNQNKNKMEPMKRQNLLLSATLNEKVNRLAKISLKNPVMIGLDEQNSSAHGKNHTSLLSDDEEEILEKHNVTVEQAVDDFKLPAQLVQRYVKVSCGSRLAIL----LTILKSLFERQLSHKVVVFLSTCDSVDFHHTVL-------SQLEWSPGLQLDTDKKQKFISCKVFRLHGNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDFPKVKCIIQYDSPGEASEYVHRVGRTARIGEKGEALLFLQPIETDYLRDLE--LHGASLTEYPLQKVLDSFPVNGQRLHKRKQISLDMHPWIMSLQRALESFVTSEDTTKKLARDAFCSWVRAYTAHRGELKKIFMVKKLHLGHVARSFGLKEQPSLLGRS 564
BLAST of RNA helicase vs. TrEMBL
Match: A0A0X3PVN4 (RNA helicase OS=Schistocephalus solidus OX=70667 GN=DDX31 PE=3 SV=1) HSP 1 Score: 529.635 bits (1363), Expect = 1.588e-173 Identity = 292/642 (45.48%), Postives = 406/642 (63.24%), Query Frame = 3
Query: 759 EKFLSSTK-GVNS--EPVFSDKSFEKYSE---LHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQ----RQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIG--KPNNIV--NPEEEAV----DSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHH---SGTLRTRK-SAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDNDIEMTATNGKRRK----CSEGAPEPPNHSSKRPKLD-----------------QAHRNMLAEFGL 2555
E+FL++ K VN+ EP+FS S++++ E LHPHL+ TL + + T IQ AI PL +G D LIK+ TGSGKT SYA+PL+N L ++PPITR G A+V+ PTRELA QT +V +L+ +RIV+G LIGG K + QK +LRKGLNI+ISTP RLL HL K+ L L +QWL+IDEADR+ ELG+ +VR+V+E++ ++ + +QTVL+SATLT GVENLAGLAL+NPVR EV +P+ + +P ++++ +F+MP GL+H+LLVCP KLR+V L +FLLLK +Y K +GK++VF ATQD V+FHY+LF L + N D ++++++F+LHG M+H+ R VFR FS C G LLTTDV SRGLD++G+ WV+QYH G P+DY+HRVGRTARAG +GKALL L P E Y++ L+++V G+ ++K+ + V++TAL H S + +K S T+E++ ++ L VS + LQ+LA Y S +R+Y FS MR F +R LHLGHVA++ E P +I+ T S N G+RR+ S +P PP S+R D A RNMLAE+GL
Sbjct: 119 EEFLNTVKEPVNAFIEPLFSKTSWKEFGEKIGLHPHLVSTLVNHFNLKKPTLIQTSAIKPLCDGCDALIKAQTGSGKTFSYAVPLLNHLMNLEPPITRGDGPRAVVLLPTRELASQTAEVFVQLTKACIRIVSGCLIGGTKRKSQKASLRKGLNIIISTPQRLLDHLGKTSSLTLKGVQWLVIDEADRLVELGFERDVRRVIERVAREVSAVDRSVPVQTVLLSATLTPGVENLAGLALRNPVRCEVGEQSSLQPDTLKTNSPSQDSIMAPHAAFAMPSGLKHFLLVCPCKLRLVILAAFLLLKARYNKRSGKIIVFFATQDCVDFHYRLFGETLCDT-------NDDMHSPVLASNLNLFRLHGNMDHNDRYPVFRAFSNCPNGILLTTDVASRGLDLAGVAWVIQYHVSGTPVDYVHRVGRTARAGGRGKALLMLLPEEETYVSMLRSTV-GIELRKLEVTDVLQTALFHVNNSAKMANKKASVTTVEDAAASLSRHLLTTVSQNSELQALAEKAYLSFLRAYASFSGPMRAHFTFRRLHLGHVARAFCLQEAPSDIAAKVTGR--RSASGHTGN------APGQRRRQPRLTSASSPPPPAQKSRRLDFDADPANQPARAPRHKPAEMATRNMLAEYGL 744
BLAST of RNA helicase vs. TrEMBL
Match: A0A183TK58 (RNA helicase OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS16856 PE=3 SV=1) HSP 1 Score: 525.013 bits (1351), Expect = 3.609e-173 Identity = 286/627 (45.61%), Postives = 396/627 (63.16%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSE---LHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQ----RQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIG--KPNNIV--NPEEEAV----DSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHH---SGTLRTRK-SAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDNDIEMTATNGKRRK----CSEGAPEPPNHSSKRPKLD-----------------QAHRNMLAEFGL 2555
EP+FS S++++ E LHPHL+ TL + + T IQ AI PL +G D LIK+ TGSGKT SYA+PL+N L ++PPITR G A+V+ PTRELA QT +V +L+ +RIV+G LIGG K + QK +LRKGLNI+ISTP RLL HL K+ L L +QWL+IDEADR+ ELG+ +VR+V+E++ ++ + +QTVL+SATLT GVENLAGLAL+NPVR EV +P+ + +P ++++ +F+MP GL+H+LLVCP KLR+V L +FLLLK +Y K +GK++VF ATQD V+FHY+LF L + N D ++++++F+LHG M+H+ R VFR FS C G LLTTDV SRGLD++G+ WV+QYH G P+DY+HRVGRTARAG +GKALL L P E Y++ L+++V G+ ++K+ + V++TAL H S + +K S T+E++ ++ L VS + LQ+LA Y S +R+Y FS MR F +R LHLGHVA++ E P +I+ T S N G+RR+ S +P PP S+R D A RNMLAE+GL
Sbjct: 27 EPLFSKTSWKEFGEKIGLHPHLVSTLVNHFNLKKPTLIQTSAIKPLCDGCDALIKAQTGSGKTFSYAVPLLNHLMNLEPPITRGDGPRAVVLLPTRELASQTAEVFVQLTKACIRIVSGCLIGGTKRKSQKASLRKGLNIIISTPQRLLDHLGKTSSLTLKGVQWLVIDEADRLVELGFERDVRRVIERVAREVSAVDRSVPVQTVLLSATLTPGVENLAGLALRNPVRCEVGEQSSLQPDTLKTNSPSQDSIMAPHAAFAMPSGLKHFLLVCPCKLRLVILAAFLLLKARYNKRSGKIIVFFATQDCVDFHYRLFGETLCDT-------NDDMHSPVLASNLNLFRLHGNMDHNDRYPVFRAFSNCPNGILLTTDVASRGLDLAGVAWVIQYHVSGTPVDYVHRVGRTARAGGRGKALLMLLPEEETYVSMLRSTV-GIELRKLEVTDVLQTALFHVNNSAKMANKKASVTTVEDAAASLSRHLLTTVSQNSELQALAEKAYLSFLRAYASFSGPMRAHFTFRRLHLGHVARAFCLQEAPSDIAAKVTGR--RSASGHTGN------APGQRRRQPRLTSASSPPPPAQKSRRLDFDADPANQPARAPRHKPAEMATRNMLAEYGL 637
BLAST of RNA helicase vs. TrEMBL
Match: A0A5K3EY06 (RNA helicase OS=Mesocestoides corti OX=53468 PE=4 SV=1) HSP 1 Score: 521.161 bits (1341), Expect = 3.150e-172 Identity = 280/611 (45.83%), Postives = 390/611 (63.83%), Query Frame = 3
Query: 765 FLSSTKGVNSEPVFSDKSFEKYSE---LHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLE----SLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPE-EEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQS----TSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDNDIEMTATNGKRRKCSEGAPEP-PNHSSKRPKLDQ-AHRNMLAEFGL 2555
LS T N E VFS S+E + LHPHL+ + + TAIQ AI L G+D LIK+ TGSGKTL+YA+P++NSL +P ITR G +++I PTRELA QT V+T+L VRIV G L+GG+K + +K +LRKGLNI++ TP RLL HL K+ L L LQWLIIDEADR+ ELG+ +V ++++++ ++ LE S+QTVL+SATLT GVE LAGLALKNPV+ +V P+ + E ++ + FSMP GL+H+LL+ P K R+VAL +F+LLK KY + +GK++VF ATQD V+FHY+LF LR+ + ++D+S ++ +++LHG M+ +RQAVF+ FS+C G L+TTDV SRGLD++G+ WVVQYH G PIDY+HRVGRTARAG +GKALL LQP E +Y L +V GL ++K+ L V++TAL H + R+S T+EE+ +K V+ +P L +LA Y S +R+Y F+ EMR F ++ LHLGHVA++ TP +I+ T P S + + T +R + ++ E P +PK + A RNMLAE+GL
Sbjct: 9 LLSETINPNIESVFSKTSWENFGSQMNLHPHLLSIIQKNFRYQYPTAIQVSAIRKLCEGRDALIKAQTGSGKTLAYALPMLNSLMMAEPRITRSDGPKSLIILPTRELAAQTASVMTQLCRACVRIVPGCLVGGMKRKGEKASLRKGLNIIVGTPRRLLDHLGKTAVLSLRALQWLIIDEADRLVELGFERDVGRIIDRVSRETHLEGCDSSIQTVLLSATLTPGVETLAGLALKNPVKCDVSDELAPDEWKSSELDKRIAPFSMPSGLKHFLLIVPCKQRLVALAAFMLLKTKYSRRSGKLMVFFATQDCVDFHYRLFTEALRD----------GDGKVDESGFHTNNLHLYRLHGNMDPKERQAVFQAFSSCPDGILITTDVASRGLDLAGVAWVVQYHVSGTPIDYVHRVGRTARAGGRGKALLMLQPEEESYTQMLSATV-GLQVEKLKLSDVLQTALFHLQR-KGRQSVTTVEEAAASMSKHFFLTVADEPELSALAEKAYVSFLRAYASFTGEMRVHFAFKRLHLGHVARAFCLHATPSDIASRVTGKRPASSNRMTEQGSNTTVNKSRRLELADKTGEQRPLQRKHKPKPSELATRNMLAEYGL 607
BLAST of RNA helicase vs. TrEMBL
Match: A0A5K3EY10 (RNA helicase OS=Mesocestoides corti OX=53468 PE=4 SV=1) HSP 1 Score: 525.013 bits (1351), Expect = 3.998e-172 Identity = 280/615 (45.53%), Postives = 392/615 (63.74%), Query Frame = 3
Query: 753 DMEKFLSSTKGVNSEPVFSDKSFEKYSE---LHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLE----SLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPE-EEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQS----TSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDNDIEMTATNGKRRKCSEGAPEP-PNHSSKRPKLDQ-AHRNMLAEFGL 2555
D+ +S T N E VFS S+E + LHPHL+ + + TAIQ AI L G+D LIK+ TGSGKTL+YA+P++NSL +P ITR G +++I PTRELA QT V+T+L VRIV G L+GG+K + +K +LRKGLNI++ TP RLL HL K+ L L LQWLIIDEADR+ ELG+ +V ++++++ ++ LE S+QTVL+SATLT GVE LAGLALKNPV+ +V P+ + E ++ + FSMP GL+H+LL+ P K R+VAL +F+LLK KY + +GK++VF ATQD V+FHY+LF LR+ + ++D+S ++ +++LHG M+ +RQAVF+ FS+C G L+TTDV SRGLD++G+ WVVQYH G PIDY+HRVGRTARAG +GKALL LQP E +Y L +V GL ++K+ L V++TAL H + R+S T+EE+ +K V+ +P L +LA Y S +R+Y F+ EMR F ++ LHLGHVA++ TP +I+ T P S + + T +R + ++ E P +PK + A RNMLAE+GL
Sbjct: 114 DLLNIMSETINPNIESVFSKTSWENFGSQMNLHPHLLSIIQKNFRYQYPTAIQVSAIRKLCEGRDALIKAQTGSGKTLAYALPMLNSLMMAEPRITRSDGPKSLIILPTRELAAQTASVMTQLCRACVRIVPGCLVGGMKRKGEKASLRKGLNIIVGTPRRLLDHLGKTAVLSLRALQWLIIDEADRLVELGFERDVGRIIDRVSRETHLEGCDSSIQTVLLSATLTPGVETLAGLALKNPVKCDVSDELAPDEWKSSELDKRIAPFSMPSGLKHFLLIVPCKQRLVALAAFMLLKTKYSRRSGKLMVFFATQDCVDFHYRLFTEALRD----------GDGKVDESGFHTNNLHLYRLHGNMDPKERQAVFQAFSSCPDGILITTDVASRGLDLAGVAWVVQYHVSGTPIDYVHRVGRTARAGGRGKALLMLQPEEESYTQMLSATV-GLQVEKLKLSDVLQTALFHL-QRKGRQSVTTVEEAAASMSKHFFLTVADEPELSALAEKAYVSFLRAYASFTGEMRVHFAFKRLHLGHVARAFCLHATPSDIASRVTGKRPASSNRMTEQGSNTTVNKSRRLELADKTGEQRPLQRKHKPKPSELATRNMLAEYGL 716
BLAST of RNA helicase vs. TrEMBL
Match: A0A0R3UJ87 (RNA helicase OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS7553 PE=3 SV=1) HSP 1 Score: 517.694 bits (1332), Expect = 1.519e-169 Identity = 279/615 (45.37%), Postives = 390/615 (63.41%), Query Frame = 3
Query: 753 DMEKFLSSTKGVNSEPVFSDKSFEKYSE---LHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLE----SLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPE-EEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQS----TSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDNDIEMTATNGKRRKCSEGAPEP-PNHSSKRPKLDQ-AHRNMLAEFGL 2555
D+ +S T N E VFS S+E + LHPHL+ + + TAIQ AI L G+D LIK+ TGSGKTL+YA+P++NSL +P ITR G +++I PTRELA QT V+T+L VRIV G L+GG+K + +K RKGLNI++ TP RLL HL K+ L L LQWLIIDEADR+ ELG+ +V ++++++ ++ LE S+QTVL+SATLT GVE LAGLALKNPV+ +V P+ + E ++ + FSMP GL+H+LL+ P K R+VAL +F+LLK KY + +GK++VF ATQD V+FHY+LF LR+ + ++D+S ++ +++LHG M+ +RQAVF+ FS+C G L+TTDV SRGLD++G+ WVVQYH G PIDY+HRVGRTARAG +GKALL LQP E +Y L +V GL ++K+ L V++TAL H + R+S T+EE+ +K V+ +P L +LA Y S +R+Y F+ EMR F ++ LHLGHVA++ TP +I+ T P S + + T +R + ++ E P +PK + A RNMLAE+GL
Sbjct: 103 DLLNIMSETINPNIESVFSKTSWENFGSQMNLHPHLLSIIQKNFRYQYPTAIQVSAIRKLCEGRDALIKAQTGSGKTLAYALPMLNSLMMAEPRITRSDGPKSLIILPTRELAAQTASVMTQLCRACVRIVPGCLVGGMKRKGEKA--RKGLNIIVGTPRRLLDHLGKTAVLSLRALQWLIIDEADRLVELGFERDVGRIIDRVSRETHLEGCDSSIQTVLLSATLTPGVETLAGLALKNPVKCDVSDELAPDEWKSSELDKRIAPFSMPSGLKHFLLIVPCKQRLVALAAFMLLKTKYSRRSGKLMVFFATQDCVDFHYRLFTEALRD----------GDGKVDESGFHTNNLHLYRLHGNMDPKERQAVFQAFSSCPDGILITTDVASRGLDLAGVAWVVQYHVSGTPIDYVHRVGRTARAGGRGKALLMLQPEEESYTQMLSATV-GLQVEKLKLSDVLQTALFHL-QRKGRQSVTTVEEAAASMSKHFFLTVADEPELSALAEKAYVSFLRAYASFTGEMRVHFAFKRLHLGHVARAFCLHATPSDIASRVTGKRPASSNRMTEQGSNTTVNKSRRLELADKTGEQRPLQRKHKPKPSELATRNMLAEYGL 703
BLAST of RNA helicase vs. Ensembl Cavefish
Match: ddx31 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-030131-3973]) HSP 1 Score: 338.576 bits (867), Expect = 1.304e-104 Identity = 193/540 (35.74%), Postives = 316/540 (58.52%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNP----EEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGI---NWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVS--LRSVMETA-LHHSGTLRTRKSAHTIEESIFLTAKLL----EDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREIS 2372
E +F+ +FE+ +LHPHL+ TL+ + +T T++Q++ IP L+ GKD +++S TGSGKTL+Y IPL+ SLQA+ P I R G A+VI PTRE+ L L+ PF IV G+L+GG K + +K LRKG+NILISTP RL+ H++ + + + ++WL++DEADR +LG+ +++ ++ + + Q VL+SATLT+G+ LA +++ +PV ++ + P E++ DS + QH ++V P+KLR+V L +F+L KCK+ +H K++VF+++ ++VEF + +L+ P+T + + ++ +LHG M+ ++R VF+ FS AG LL T C + + + + +QY+PP + +Y+HRVGRTAR G++G LLFL P+E Y++ L LH K+ L ++M+ G ++KSA E + + A +L E++V A+ +S VR+YT + ++ F R+LHLGH AKS + P+ +S
Sbjct: 125 EKMFTGNTFEEL-DLHPHLVATLNKVLNVTSMTSVQKETIPVLMAGKDAVVRSQTGSGKTLAYGIPLVQSLQAVQPKIQRSDGPLAVVIVPTREVG-----CLICLNTPFTWIVPGVLMGGEKRKAEKARLRKGINILISTPGRLVDHIKNTLSIAFSAVRWLVLDEADRTLDLGFEKDLTVILNALNAAG--TARQNVLLSATLTEGLSRLASISMSDPVYIQISEGDGSSKSAKPSSTTSEQSPDS-QADLQAQH-VVVVPSKLRLVCLATFILAKCKF-QHGQKLIVFVSSCEVVEFLVTIL------SKVLESEPDTTS---KRQQPINFLRLHGNMQQEERMEVFQEFSQSKAGVLLCTVSCCYTVSLCCVFFFFFFLQYNPPTSAAEYVHRVGRTARIGAQGNGLLFLTPSETAYVDSLANHNISLHEMKMDDILSTLMQDERFKGRGKWDSKKSAAAREHELRVRATVLQTEFENYVHGSAETVQAAKKALQSFVRAYTAYPSALKHIFHIRNLHLGHAAKSFGLRDAPQGLS 644
BLAST of RNA helicase vs. Ensembl Cavefish
Match: ddx18 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Source:ZFIN;Acc:ZDB-GENE-030131-9685]) HSP 1 Score: 257.299 bits (656), Expect = 5.565e-74 Identity = 181/517 (35.01%), Postives = 270/517 (52.22%), Query Frame = 3
Query: 801 VFSDKSFEKYSEL-HPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARA-GSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMA 2345
F D+SF +EL + +K + + M T IQ K+I PLL G+DVL + TGSGKTL++ IP I + + +G I++SPTRELA+QT VL L V G+++GG + + L G+NIL++TP RLL HL+ + G NLQ LIIDEADRI E+G+ E ++Q+++ + K+R QT+L SAT T+ VE+LA ++LK E Y+G + N E V+ GL+ +VCP++ R + L +FL K K++VF ++ V+FHY+L + +LP + +HG + KR F F +G LL TDV +RGLD+ ++W+VQY PP +P +YIHRVGRTAR G ALL L+P E+ ++ L+ + KV L S E + ++++ LE + + L A+ YKS VR+Y S ++Q + + L+L VA S
Sbjct: 220 AFEDQSFASLAELVSENTLKGIKE-MGFENMTEIQHKSIRPLLEGRDVLAAAKTGSGKTLAFLIPAIELIYKLR--FMPRNGTGVIILSPTRELAMQTYGVLKDLMLHHVHTY-GLIMGGSNRSAEAQKLGNGVNILVATPGRLLDHLQNTAGFMYKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKR-----QTMLFSATQTRKVEDLARISLKK----EPLYVGVDD---NKETATVE------GLEQGYVVCPSEKRFLLLFTFLKKNRKK-----KLMVFFSSCMSVKFHYELLNYI--------DLP--------------VMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGIGHALLILRPEELGFLRFLKQA-------KVPL-SEFEFSWSKISDIQSQ----------------LEKLIEKNYYLHKSAQEAYKSYVRAYDSHS--LKQIYNVQTLNLPQVALSFG 661
BLAST of RNA helicase vs. Ensembl Cavefish
Match: ENSAMXT00000031571.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000729.1:45111:52134:1 gene:ENSAMXG00000042612.1 transcript:ENSAMXT00000031571.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 249.98 bits (637), Expect = 1.920e-73 Identity = 158/421 (37.53%), Postives = 233/421 (55.34%), Query Frame = 3
Query: 801 VFSDKSFEKYSEL-HPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARA-GSKGKALLFLQPAEVNYINHLQTS 2057
F D+SF +EL + +K + + M T IQ K+I PLL G+DVL + TGSGKTL++ IP I + + +G I++SPTRELA+QT VL L V G+++GG + + L G+NIL++TP RLL HL+ + G NLQ LIIDEADRI E+G+ E ++Q+++ + K+R QT+L SAT T+ VE+LA ++LK E Y+G + N E V+ GL+ +VCP++ R + L +FL K++VF ++ V+FHY+L + +LP + +HG + KR F F +G LL TDV +RGLD+ ++W+VQY PP +P +YIHRVGRTAR G ALL L+P E+ ++ L+ +
Sbjct: 102 AFEDQSFASLAELVSENTLKGIKE-MGFENMTEIQHKSIRPLLEGRDVLAAAKTGSGKTLAFLIPAIELIYKLR--FMPRNGTGVIILSPTRELAMQTYGVLKDLMLHHVH-TYGLIMGGSNRSAEAQKLGNGVNILVATPGRLLDHLQNTAGFMYKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKR-----QTMLFSATQTRKVEDLARISLKK----EPLYVGVDD---NKETATVE------GLEQGYVVCPSEKRFLLLFTFL-----KKNRKKKLMVFFSSCMSVKFHYELLNYI--------DLP--------------VMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGIGHALLILRPEELGFLRFLKQA 473
BLAST of RNA helicase vs. Ensembl Cavefish
Match: ENSAMXT00000040066.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000729.1:45111:52135:1 gene:ENSAMXG00000042612.1 transcript:ENSAMXT00000040066.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 248.44 bits (633), Expect = 2.503e-73 Identity = 159/421 (37.77%), Postives = 234/421 (55.58%), Query Frame = 3
Query: 801 VFSDKSFEKYSEL-HPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARA-GSKGKALLFLQPAEVNYINHLQTS 2057
F D+SF +EL + +K + + M T IQ K+I PLL G+DVL + TGSGKTL++ IP I + + +G I++SPTRELA+QT VL L V G+++GG + + L G+NIL++TP RLL HL+ + G NLQ LIIDEADRI E+G+ E ++Q+++ + K+R QT+L SAT T+ VE+LA ++LK E Y+G + N E V+ GL+ +VCP++ R + L +FL K K++VF ++ V+FHY+L + +LP + +HG + KR F F +G LL TDV +RGLD+ ++W+VQY PP +P +YIHRVGRTAR G ALL L+P E+ ++ L+ +
Sbjct: 65 AFEDQSFASLAELVSENTLKGIKE-MGFENMTEIQHKSIRPLLEGRDVLAAAKTGSGKTLAFLIPAIELIYKLR--FMPRNGTGVIILSPTRELAMQTYGVLKDLMLHHVH-TYGLIMGGSNRSAEAQKLGNGVNILVATPGRLLDHLQNTAGFMYKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKR-----QTMLFSATQTRKVEDLARISLKK----EPLYVGVDD---NKETATVE------GLEQGYVVCPSEKRFLLLFTFLKKNRKK-----KLMVFFSSCMSVKFHYELLNYI--------DLP--------------VMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGIGHALLILRPEELGFLRFLKQA 436
BLAST of RNA helicase vs. Ensembl Cavefish
Match: ddx10 (DEAD-box helicase 10 [Source:NCBI gene;Acc:103036294]) HSP 1 Score: 215.698 bits (548), Expect = 3.040e-58 Identity = 162/473 (34.25%), Postives = 238/473 (50.32%), Query Frame = 3
Query: 618 SQPHTKSHQQNNIDSKKHLKNYNTIDNKNKNPKSTLDLD-EDANIKDMEKFLSSTKGVNSEPVFSDKSFEKYSELHPHLIKTLSDRM--KITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAE 2027
Q K HQ + +K K Y+ K P+ D + E NI +K + +N + V K+S+ P KTL + + T IQ++ I L GKDVL + TGSGKTL++ IP++ L T G+ A++ISPTRELA QT +VL K+ G++IGG ++ + + + NI+I TP RLL H++++ ++L L++DEADRI ++G+A+ + ++E + K RQ T+L SAT TK V++LA L+LKNP V E+A FS P L+ +VC ++ L SFL + H K++VF A V++ LF VF R + + + LHG + KR V+ +F A L TD+ +RGLD +NWVVQ+ P + YIHRVGRTAR G+ALL L P+E
Sbjct: 6 GQEKKKHHQGPVKNFEKWKKRYDKTKQHVKPPRRKRDWEIERENI---QKLQAKYDQINPKDVI------KFSDF-PLSKKTLRGLLEGQYRQPTEIQKQTIGFALQGKDVLGAAKTGSGKTLAFLIPVLECL--YRHQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNH-EFSAGLVIGGKDLKDELLKIHR-TNIIICTPGRLLQHMDENSTFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKSRQ-----TLLFSATQTKSVKDLARLSLKNP------------EYVWVHEQA--KFSTPATLEQSYMVCELHQKVNMLFSFL----RSHLHK-KIIVFFACCKEVQY---LFRVFCRLRP-----------------GISVLALHGKQQQMKRVEVYNDFVRKKAAVLFATDIAARGLDFPAVNWVVQFDCPEDANTYIHRVGRTARYKEGGEALLILLPSE 420
BLAST of RNA helicase vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010109.1 (pep scaffold:Pmarinus_7.0:GL476492:615610:626431:-1 gene:ENSPMAG00000009147.1 transcript:ENSPMAT00000010109.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 255.758 bits (652), Expect = 1.161e-75 Identity = 164/478 (34.31%), Postives = 258/478 (53.97%), Query Frame = 3
Query: 630 TKSHQQNNIDSKKHLKNYNTIDNKNKNPKSTLDLDEDANIKDMEKFLSSTKGVNSEPVFSDKSFEKYSEL-HPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARA-GSKGKALLFLQPAEVNYINHLQTS 2057
T+S + D + +N D++ ++ + T D KD + + + + F D SF +EL + +K +++ M T IQ K+I PLL G+D+L + TGSGKTL++ IP I + I +G +V+SPTRELA+QT VL +L V G+++GG + + L KG+NIL++TP RLL H++ + NLQ L+IDEADRI E+G+ E ++Q++ + K+R QT+L SAT T+ +E+LA ++LK E Y+G + + E VD + +VCP++ R + L +FL K K++VF ++ V+FHY+LF+ +LP + +HG + KR F F +G LL TDV +RGLD+ ++W+VQ+ PP +P +YIHRVGRTAR G +G ALL L+P E+ ++ +L+ +
Sbjct: 120 TESKRPRGEDVEADGENQEQTDDEKRSGEGT-----DGETKDSDDDGPALP-IGTTGAFEDMSFSSLAELVSEYTLKAVAE-MGFATMTEIQHKSIRPLLEGRDILAAARTGSGKTLAFLIPAIELIHKIK--FMPRNGTGVLVLSPTRELAMQTYGVLRELMKHHVHTY-GLIMGGSNRTAEAQKLAKGINILVATPGRLLDHMQNTNTFMYKNLQCLVIDEADRILEVGFEEEIKQIIRLLPKKR-----QTMLFSATQTRKIEDLAKISLKK----EPLYVGVDD---HKETATVDGLEQQRSTPY--VVCPSEKRFLLLFTFLKKNRKK-----KIMVFFSSCMSVKFHYELFNYI--------DLP--------------VMGIHGKQKQTKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGIGGQGHALLILRPEELGFLRYLKQA 546
BLAST of RNA helicase vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000216.1 (pep scaffold:Pmarinus_7.0:GL476721:117971:126978:-1 gene:ENSPMAG00000000186.1 transcript:ENSPMAT00000000216.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 191.43 bits (485), Expect = 1.067e-53 Identity = 128/394 (32.49%), Postives = 206/394 (52.28%), Query Frame = 3
Query: 891 TAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLR---MVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVG 2063
T IQ +AIP L GKD++ + TGSGKT ++A+P++ +L +D P ++A+V++PTRELA Q + L + + I + +++GG+ M Q AL K +++I+TP RL+ HLE ++G + L++L++DEADRI + + V ++++ I K+R +T L SAT+TK V+ L ALK PV+ V+ + + V+ LQ Y + P K + +V +L+ L ++F +T + + Q + LRN +P LHG M +KR F + LL TDV SRGLD+ ++ V+ + P + DYIHRVGRTARAG GK++ F+ +V ++ +G
Sbjct: 19 TKIQVEAIPVALQGKDIIGLAETGSGKTGAFALPILQAL--LDAP----QRLFALVLTPTRELAFQISEQFEALGSS-IGIKSAVVVGGIDMMSQSLALAKKPHVIIATPGRLVDHLENTKGFNIRALKYLVMDEADRILNMDFETEVDKILKVIPKER-----KTYLFSATMTKKVQKLQRAALKEPVKCS----------VSTKYQTVEK------LQQYYVFIPAKFKDSYLVYILNEL--------AGNSFIIFCSTCN----NTQRIALLLRNLG-FTAIP-----------------LHGQMSQNKRLGSLNKFKGKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVSQYDVELFQRIEHLIG 354
BLAST of RNA helicase vs. Ensembl Sea Lamprey
Match: ddx55 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Source:NCBI gene;Acc:286745]) HSP 1 Score: 177.178 bits (448), Expect = 7.472e-48 Identity = 135/465 (29.03%), Postives = 214/465 (46.02%), Query Frame = 3
Query: 987 IPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVK-MQIQKKALRKGLNILISTPNRLLYHLEKS-EGLKLN----NLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPR 2363
IP+I L D V AI+I+PTRELAVQ +VL + F + + IGG M K L G +++++TP RL ++S EGL L NL L++DEADR+ ++G+ + ++ + KQR+ T L SAT T+ +E L L+NPVR V G + + P L ++ ++C + + L++FL + K KH +VF +T VE+ + + L V + +HG M+ D+R +F F + +G L+ TDV +RG+D+ ++WV+Q+ PP + ++HR GRTAR G+ G AL+FL P E Y+N L + QK L + IE + + +D + + S V++Y E F +D+ LG +A+ A + PR
Sbjct: 1 IPIIEMLLRRDGAFREMEEVGAIIITPTRELAVQIDEVLGQFLQRFPQFSHILFIGGSNPMDDVHKFLANGGHVIVATPGRLEDLFKRSDEGLDLRGAVRNLDVLVLDEADRLLDMGFEACLNTILSFLPKQRR-----TGLFSATQTQELEALVRAGLRNPVRIAVKERGAAES---------STRRTPARLDNFYVICRAEQKFNQLVAFLRAR-KQEKH----LVFFSTCAGVEYFGKALQMLLHG--------------------VTVMSIHGKMK-DRRNKIFATFRSLPSGLLVCTDVMARGIDIPEVDWVLQFDPPSSASAFVHRCGRTARIGNHGSALVFLLPMESAYVNFLSIN------QKCPL------------------TERAIERDVVDVLPQVRRAARTDRAVYEKGMQAFVSCVQAYA--KHECSLIFRIKDMDLGALARGFALLRLPR 399
BLAST of RNA helicase vs. Ensembl Sea Lamprey
Match: ddx27 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8]) HSP 1 Score: 177.563 bits (449), Expect = 1.522e-46 Identity = 124/426 (29.11%), Postives = 206/426 (48.36%), Query Frame = 3
Query: 798 PVFSDKSFEKYSELHPH------LIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSL--QAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKL-RMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHL 2048
P F D F + P L+K +S M T IQ+ IP L GKD+ +ATG+GKT ++ +P++ L + P+TR +V+ PTREL +Q V +LS F + T + +GG+ ++ Q+ ALR G +ILI+TP RL+ HL+ L++++ LI+DEADR+ + + E +++++ Q QR QT+L SAT+T V++LA ++LK+PV+ ++ ++ P Q ++ + P + A++S LL + + H V+VF + + + +LHG + +R R F L+ TDV +RGLD+ G+ V+ + P Y+HRVGRTARAG G+++ + E + +
Sbjct: 207 PFFEDAPFVDKNITFPDMNLSRPLLKAISS-MGFQQPTPIQKSCIPVGLLGKDICACAATGTGKTAAFMLPVLERLVYKPRQAPVTR-----VLVLVPTRELGIQVHSVTRQLSQ-FCNVQTSLAVGGLDIKTQEAALRAGPDILIATPGRLIDHLQNCPSFDLSSIEILILDEADRMLDEYFEEQMKEIIRQCSHQR-----QTMLFSATMTDQVQDLAAVSLKHPVKI---FVNSNTDVA------------PYLRQEFVRIRPNREGDREAIVSALLTRT-FQDH---VMVFTHR----------------------------LHILLGLLGLRVGELHGNLSQTQRLEALRRFKDDQIDILVATDVAARGLDIEGVKTVINFTMPSTIKHYVHRVGRTARAGRAGRSISLVGETERRVLKDI 573
BLAST of RNA helicase vs. Ensembl Sea Lamprey
Match: DDX54 (DEAD-box helicase 54 [Source:HGNC Symbol;Acc:HGNC:20084]) HSP 1 Score: 166.392 bits (420), Expect = 3.791e-45 Identity = 120/393 (30.53%), Postives = 194/393 (49.36%), Query Frame = 3
Query: 885 ISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVG 2063
+ T IQ K IP +L G+DV+ + TGSGKT ++ +P+ L A + ++G A+V+SPTRELA+QT TK + T +++GG +M+ Q AL + +I+I TP RL+ H+ LKL +++++ DEADR+ E+G+AE + +++ ++ R QT+L SATL K + A L +PV +D K ++ + + P L H LL+ H + VVF+AT+ VE +LR E+ + ++ ++ +R+ F L+ TDV +RG+D ++ V+ Y+ PG P +IHRVGR ARAG G A + P E+ ++ L +G
Sbjct: 55 VPTPIQRKCIPVILEGRDVVAMARTGSGKTAAFLVPMFERLHA----RSAQAGARALVLSPTRELALQTSK-FTKELGKHTGLKTALILGGDRMEDQFAALHENPDIIIGTPGRLM-HVVVEMNLKLQAMEYVVFDEADRLFEMGFAEQLTEIIRRLPDSR-----QTLLFSATLPKQLVEFARAGLSDPVLIRLDVDSKLSDQLKLAFMCSRADDKPCVLLH------------------LLRTVVKPHE-QTVVFVATKHHVE--------YLR--------------ELVSQAGMSCAYIYSALDQTERKINVGKFVHKKTMLLIVTDVAARGID-PMLDNVINYNFPGKPKLFIHRVGRVARAGRSGTAYSLVAPDEMPFVIDLHLFLG 394
BLAST of RNA helicase vs. Ensembl Yeast
Match: HAS1 (ATP-dependent RNA helicase; involved in the biogenesis of 40S and 60S ribosome subunits; localizes to both the nuclear periphery and nucleolus; highly enriched in nuclear pore complex fractions; constituent of 66S pre-ribosomal particles [Source:SGD;Acc:S000004903]) HSP 1 Score: 251.521 bits (641), Expect = 9.684e-75 Identity = 174/518 (33.59%), Postives = 269/518 (51.93%), Query Frame = 3
Query: 822 EKYSEL---HPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAG-SKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPR 2363
EK+ EL P L K + ++M T T++Q + IPPLL G+DVL + TGSGKTL++ IP I L ++ +G IVI+PTRELA+Q V +L F G++IGG + + + L KG+N+LI+TP RLL HL+ ++G NL+ LIIDEADRI E+G+ + +RQ+++ + E Q++L SAT T VE+LA ++L+ P ++ + + +N S GL+ +VC + R + L SFL K K++VF+++ + V+++ +L + +LP + +LHG + KR F F G L+ TDV +RGLD+ ++W++Q+ PP +P DYIHRVGRTAR KGK+L+FL P E+ ++ +L+ S KV L E I LE + S+ L A++GY+S +++Y S ++ + L L VAKS P+
Sbjct: 42 EKFEELKLSQPTL-KAI-EKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLK--FKPRNGTGIIVITPTRELALQIFGVARELME-FHSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPN----EDRQSMLFSATQTTKVEDLARISLR-PGPLFINVVPETDN------------STADGLEQGYVVCDSDKRFLLLFSFLKRNQK-----KKIIVFLSSCNSVKYYAELLNYI--------DLP--------------VLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGFLRYLKAS-------KVPLNEY-----------------EFPENKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAYA--SHSLKTVYQIDKLDLAKVAKSYGFPVPPK 484
BLAST of RNA helicase vs. Ensembl Yeast
Match: DBP7 (Putative ATP-dependent RNA helicase of the DEAD-box family; involved in ribosomal biogenesis; required at post-transcriptional step for efficient retrotransposition; essential for growth under anaerobic conditions [Source:SGD;Acc:S000001732]) HSP 1 Score: 240.35 bits (612), Expect = 1.304e-68 Identity = 184/581 (31.67%), Postives = 293/581 (50.43%), Query Frame = 3
Query: 849 LIKTLSDRMKITISTAIQEKAIPPLLN--GK-DVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLK---LNNLQWLIIDEADRITELGYAENVRQVMEQI--------KKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSM-PIGLQHYLLVCPTKLRMVALLSFL------LLKCKYGKHTGKVVVFMATQDLVEFHYQLF------HVFLRNKSLLQELPNTDNTEI-----DQSTSVDIFQLHGGMEHDKRQAVFRNFS---ACSAG---FLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPA-EVNYINHLQ-TSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESI---------------FLTAKL-LEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDN 2423
L+ L +M+I T+IQ++AIP ++ GK D I + TGSGKTLSY +P+I+++ +D + R SG +A+VI+PTRELA Q V + L + +V +LIGG + + +K LRKG N +I TP R+L HL+ ++ +K +L+++++DE D++ ELG+ E + ++++ + K + L +L SATLT GV L +ALK DY I N ++ D ++ P L + + P KLR+V L + L + T + +VF++ D VEFHY F H L S+ L NT + V I++LHG + R + ++F+ + G + TDV SRGLD+ + V++ PP D++HRVGRTARAG KG++LLFL P E Y++++Q G + K + ++ A R K E+S T L +E V D ++LA G+ S VR+Y + ++FF + LHLGH+AKS E P+ + +++ ++ +N
Sbjct: 154 LVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKLPHKLVHMLCSATLTDGVNRLRNVALK-------DY----KLISNGTKKDSDIVTVAPDQLLQRITIVPPKLRLVTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVEFHYDAFSGSDGHHKNLTGDSV--RLLTKGNTMFPCFSDSRDPDVVIYKLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDPPFAVEDHLHRVGRTARAGEKGESLLFLLPGEEEKYMDYIQPYHPMGWELLKFD-KEILMPAFKDVNVNRNDKFIRKDEKSSKNKDVGDKEYEWDTNATTWHLNIERRVVGDSAFKNLAVKGFISHVRAYATHISQEKKFFNVKFLHLGHLAKSFGLRERPKAMGLQSSKDGNSEKKPTKEN 720
BLAST of RNA helicase vs. Ensembl Yeast
Match: HCA4 (DEAD box RNA helicase; component of the SSU; interacts with Bfr2p and Enp2p; high-copy number suppression of a U14 snoRNA processing mutant suggests an involvement in 18S rRNA synthesis [Source:SGD;Acc:S000003570]) HSP 1 Score: 202.986 bits (515), Expect = 2.617e-55 Identity = 165/561 (29.41%), Postives = 264/561 (47.06%), Query Frame = 3
Query: 702 NKNPKSTLDLDEDANIKDMEKFLSSTKGVNSEPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDY--IGKPNNI---VNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLL--LKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPR 2363
N + TL ED I++++ TK +P + F K + +K L + I + T IQ +IP L G DVL + TGSGKTL++ +P+I L T G+ A++ISPTRELA+Q +VLTK+ + G++IGG ++ + + + + +NILI TP R+L HL+++ GL +NLQ L++DEADR ++G+ + + ++ + RQ T+L SAT ++ V +LA L+L DY +G + + VN E S P LQ + + P ++ L SF+ LKCK ++VF+++ V F Y+ F SL+ LHG + R F+ L TDV +RG+D ++WVVQ P + YIHRVGR AR G KGK+L+ L P E +++++ R + L+ + + L+ + DP L+ L + + S VRS + ++ +Q F + +L A S+ P+
Sbjct: 8 NTTQRKTLRQKEDEYIENLK-----TKIDEYDPKITKAKFFKDLPISDPTLKGLRESSFIKL-TEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYR--EKWTEFDGLGALIISPTRELAMQIYEVLTKIGS-HTSFSAGLVIGGKDVKFELERISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQ-----TLLFSATQSQSVADLARLSL-------TDYKTVGTHDVMDGSVNKEA------STPETLQQFYIEVPLADKLDILFSFIKSHLKCK-------MIVFLSSSKQVHFVYETFRKMQPGISLMH--------------------LHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEAF-----------LKRLNARKIEPGKLNIKQSKKKSIKPQ------------LQSLLFKDPELKYLGQKAFISYVRS--IYVQKDKQVFKFDELPTEEFAYSLGLPGAPK 488
BLAST of RNA helicase vs. Ensembl Yeast
Match: RRP3 (Protein involved in rRNA processing; required for maturation of the 35S primary transcript of pre-rRNA and for cleavage leading to mature 18S rRNA; homologous to eIF-4a, which is a DEAD box RNA-dependent ATPase with helicase activity [Source:SGD;Acc:S000001107]) HSP 1 Score: 194.897 bits (494), Expect = 2.291e-54 Identity = 143/471 (30.36%), Postives = 234/471 (49.68%), Query Frame = 3
Query: 666 KHLKNYNTIDNKNKNPKSTLDLDEDANIKDMEKFLSS---TKGVNSEPVFSDKSFEKYSELH--PHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVG 2063
K L+N + K S D +EDA + + S T +E D+SFE +SEL+ P LI+ + + + T IQ KAIPP L G D++ + TGSGKT ++AIP++N L P YA +++PTRELA Q ++ L + + + + ++GG+ M Q + L + +I+I+TP RL+ HLE ++G L L++L++DEADR+ ++ + + ++++ I Q + T L SAT+T ++ L +L NPV+ V + + + VD+ L L+V P L+ L+ L + GK ++ +F R K+ + L N +T+ LHG + ++R F A L+ TDV +RGLD+ ++ VV Y P + YIHRVGRTARAG GK++ + ++ I ++ +G
Sbjct: 26 KALENQKKLIEAEKEGGSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKN-LNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEP------YYACILAPTRELAQQIKETFDSLGS-LMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQER----TTYLFSATMTSKIDKLQRASLTNPVKCAV----------SNKYQTVDT------LVQTLMVVPGGLKNTYLIYLL------NEFIGKTMI----------------IFTRTKANAERLSGLCNLLEFSATA-----LHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLG 441
BLAST of RNA helicase vs. Ensembl Yeast
Match: DBP2 (ATP-dependent RNA helicase of the DEAD-box protein family; has strong preference for dsRNA; interacts with YRA1; required for assembly of Yra1p, Nab2p and Mex67p onto mRNA and formation of nuclear mRNP; involved in mRNA decay and rRNA processing; may be involved in suppression of transcription from cryptic initiation sites [Source:SGD;Acc:S000005056]) HSP 1 Score: 172.17 bits (435), Expect = 4.005e-46 Identity = 117/375 (31.20%), Postives = 194/375 (51.73%), Query Frame = 3
Query: 891 TAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFL 2015
T IQ + P L+G+D++ +ATGSGKTLSY +P I + A P + G +V++PTRELAVQ Q +K + RI + GGV Q + L +G I+I+TP RL+ LE + L + +L++DEADR+ ++G+ +R++++QI+ R QT++ SAT K V+ LA L +P++ +V S+ + H + ++V ++S + + K+ + A+QD Y+ +F K + ++ T+ + +HG + +R V + F + ++ TDV +RG+D+ GIN+V+ Y PGN DY+HR+GRT RAG+ G A+ F
Sbjct: 137 TGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINA-QPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHS-SRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGK-TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-----QTLMWSATWPKEVKQLAADYLNDPIQVQVG-------------------SLELSASHNI------TQIVEVVSDFEKRDRLNKY-----LETASQD---NEYKTL-IFASTKRMCDDI-----TKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFF 464
BLAST of RNA helicase vs. Ensembl Nematostella
Match: EDO36246 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJ72]) HSP 1 Score: 367.081 bits (941), Expect = 8.678e-117 Identity = 203/539 (37.66%), Postives = 323/539 (59.93%), Query Frame = 3
Query: 780 KGVNSEPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESL--QTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRN 2390
+ + ++P+F+ F + L H++ L + + ++ T++Q+ AIP LL G+DV IKS TGSGKTL YAIP++ +LQ I P I R G YA+V+ PTRELA+Q+ ++L KL PF +V G+++GG K + +K LRKG+NIL++TP RLL H+EK++ L N+QW+++DEADR+ ++G+ ++V +++ IK Q Q++++ Q VL+SATLT+GV+ L +AL NP + + +E+V + +P L+ Y ++ P+K+R+V+L SF+L K + K++VF++++D V+FHY LF L + ++++LHG M +R VF +S+ G LL+TDV +RGLD+ ++W++QY PG+ +DY+HRVGRTAR G +G+ALLFL PAEV Y+ L S + +++S+ +++T LT+ +SS ++ KS VRSY F ++ F +LHLGHVAK+ A + P IS TR+
Sbjct: 96 QSLENKPLFTGDKFSDLA-LSSHMVSNLENNVGVSKLTSVQKAAIPTLLAGEDVCIKSKTGSGKTLCYAIPVVQTLQDIVPKIERADGPYAVVLVPTRELALQSFNLLLKLVKPFQWVVPGLVVGGEKRKSEKARLRKGINILVATPGRLLDHIEKTQCLTFRNVQWIVLDEADRLLDMGFEKDVSAILKAIKDQ-QIKAMHRQAVLLSATLTQGVKQLVSIALSNPQFVSESGLNQQVEKDGSLDESVLA-QIPSQLKQYFVIVPSKMRLVSLASFILSKVQESPQN-KMIVFLSSRDSVDFHYGLFDKCL---------------GLGAGKKPELYKLHGSMSQTERTDVFTKYSSSQEGILLSTDVAARGLDLPRVSWIIQYDTPGSAVDYVHRVGRTARIGCEGQALLFLTPAEVKYLETL--SEFNIRPEELSVSKILQT----------------------LTS------ISS--------KDVKKSFVRSYATFPASLKHIFHVNNLHLGHVAKAFALRDPPTGIS-GTTRD 576
BLAST of RNA helicase vs. Ensembl Nematostella
Match: EDO38731 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SC22]) HSP 1 Score: 250.751 bits (639), Expect = 3.979e-74 Identity = 175/505 (34.65%), Postives = 263/505 (52.08%), Query Frame = 3
Query: 873 MKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALK-NPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAG-SKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNC 2381
M T T IQ K+I PLL G+D+L + TGSGKTL++ +P++ L + +GV I+ISPTREL++QT V L G+++GGV + + + L+KG+N+LI+TP RLL HL+ ++G NLQ L+IDEADRI E+G+ E +RQ++ + +R QTVL SAT TK VE+LA L+LK +P+ Y+G V+ +E S GL+ +V P++ R + L +FL + KV+VF ++ + V++H +L + +LP + ++HG + KR F F +G LL TDV +RGLD+ ++W+VQY P +P +YIHRVGRTAR KG ALLFL P E+ ++ +L+ + KV L E S L + LE + + L A++ YK+ +++Y S + + F L L VA S P +S N
Sbjct: 19 MGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVELLYKLQFKTRNGTGV--IIISPTRELSLQTYGVARDLLKHH-NFTYGIIMGGVNRKAEAERLQKGVNLLIATPGRLLDHLQNTQGFLYKNLQCLVIDEADRILEIGFEEEMRQIIRILPSKR-----QTVLFSATQTKNVEDLAKLSLKRSPL-----YVG-----VDDHKET----STVEGLEQGYIVVPSEKRFLVLFTFL-----KKNRSKKVMVFFSSCNSVKYHSELLNYI--------DLP--------------VLEIHGKQKQQKRTTTFFEFCNAKSGILLCTDVAARGLDIPEVDWIVQYDPADDPKEYIHRVGRTARGTEGKGHALLFLLPEELAFLRYLKHA-------KVPLN---EYDFSSSKILNIQSQ--------------LERLIEKNYYLHKSAKDAYKAYIQAYA--SHQHKSIFNVNSLDLQRVALSFG-FAVPPSVSLNV 447
BLAST of RNA helicase vs. Ensembl Nematostella
Match: EDO41335 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4S3]) HSP 1 Score: 214.157 bits (544), Expect = 5.702e-60 Identity = 157/504 (31.15%), Postives = 254/504 (50.40%), Query Frame = 3
Query: 870 RMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALR-KGLNILISTPNRLLYHLEKSE-GLKL----NNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEV-DYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETP 2360
+M + T +Q AIP ++ KDV +++ TGSGKTL++ IP+I + + + + + A++I+PTRELA Q +V++ L I +LIGG KA + +G NI+I TP RL L + + G+ L +L+ L++DEADR+ ++G+ ++ ++ + KQR+ T L SAT T VE L L+NPVR V + + K N+ P LQ++ L+C + + L++FL + K +VF +T V + +K+L + LPN V I LHG M+ + R +F +F +G L+ TDV +RG+D+ +NWV+QY PP + ++HR GRTAR G++G A++FL P E +Y++ + + QKV L++ L K A I TAK L+ + D L + S V++Y E F +++L LG +A+ + P
Sbjct: 22 KMNFSTMTPVQAAAIPLFMSNKDVAVEAVTGSGKTLAFVIPIIEIILRREDKLKKHE-IGALIITPTRELAQQIDEVVSTLVEDIPNIRRLLLIGGADPNADLKAFKYEGANIIIGTPGRLEDFLARQQDGINLASHLKSLEVLVLDEADRLLDMGFEASINTILGYLPKQRR-----TGLFSATQTDEVEALVRAGLRNPVRVTVREKLTKTKNVQR----------TPSTLQNFYLICRSHEKFSQLVAFL-----KARKDKKNMVFFSTCACVNYF---------SKALTKFLPN-----------VHIMALHGKMKSN-RHKIFDSFRKLESGILVCTDVMARGVDIPEVNWVIQYDPPSSANAFVHRCGRTARIGNEGNAVVFLLPTEDSYVDFISIN------QKVPLQA-----------LEPDKDAPNI------TAK-LKKLATKDRDLFEKGTKAFVSFVQAYK--KHECSLIFRFKELDLGLLAEGFGLLRLP 457
BLAST of RNA helicase vs. Ensembl Nematostella
Match: EDO41969 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S2R2]) HSP 1 Score: 207.608 bits (527), Expect = 3.640e-57 Identity = 142/404 (35.15%), Postives = 217/404 (53.71%), Query Frame = 3
Query: 822 EKYSELHPHLIKTLSDRMK--ITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAE 2027
EK+S+ P +TL MK T IQ++ IP L+G+DVL + TGSGKTL++ IP+I +L T G+ A+VISPTRELA QT +VL K+ N + G++IGG ++ ++K + K NI++ TP RLL H++++ +LQ L++DEADRI ++G+A + ++E + +RQ T+L SAT T+ V++LA L+L+ P YI E D+ S P L +VC ++ L SF+ K K++VF+++ V+F Y+ F + L +P + L+G + KR A++ F + L TD+ +RGLD +NWV+Q P + YIHR GRTAR G++LL L P+E
Sbjct: 50 EKFSDF-PISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPIIETLWR--QKWTSMDGLGALVISPTRELAYQTFEVLVKIGNKH-DLSAGLIIGGKDLKNEQKRIMK-TNIVVCTPGRLLQHMDETPNFDCTSLQILVLDEADRILDMGFAPTLNAIIENLPSERQ-----TLLYSATQTRSVKDLARLSLQEPT-----YISA--------HEKSDT-STPNRLTQSYVVCELPDKLNFLFSFIRNHLK-----SKILVFVSSCKQVKFIYEGF------RRLQPGIP--------------LMALYGKQKQLKRVAIYDEFCKKTQCVLFATDIAARGLDFPAVNWVIQLDCPEDANTYIHRAGRTARYQKDGQSLLVLLPSE 404
BLAST of RNA helicase vs. Ensembl Nematostella
Match: EDO33593 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SRU4]) HSP 1 Score: 184.882 bits (468), Expect = 7.013e-51 Identity = 128/388 (32.99%), Postives = 198/388 (51.03%), Query Frame = 3
Query: 897 IQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTG-KVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNY---INHL 2048
IQ +AIP L GKDV+ + TGSGKT ++A+P++ +L +D P ++A++++PTRELA Q + L + + + +++GG+ M Q L K +I+I+TP RL+ HLE ++G L L++L++DEADRI + + + V ++++ I K+R +T L SAT+TK V+ L +L+ PV+ EV + LQ L P+K + L+ L + G +VF T + + Q + LRN L D LHG M KR F + S L+ TDV SRGLD+ ++ V+ + P + DYIHRVGRTARAG G+++ F+ +V I HL
Sbjct: 40 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILQAL--LDNP----QRLFALILTPTRELAFQISEQCEALGSG-IGVKCAVIVGGIDMMSQALMLAKKPHIIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKER-----RTFLFSATMTKKVQKLQRASLQAPVKVEV----------------ATKYQTVEKLQQSYLFIPSKFKDCYLVYVL------NELAGNSFMVFCGTCN----NVQRVTLMLRNLGL------------------DAVPLHGQMSQSKRLGALNKFKSKSRSILVATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYDVELYQRIEHL 371
BLAST of RNA helicase vs. Ensembl Medaka
Match: ddx31 (DEAD-box helicase 31 [Source:NCBI gene;Acc:101158115]) HSP 1 Score: 372.474 bits (955), Expect = 4.054e-116 Identity = 207/550 (37.64%), Postives = 323/550 (58.73%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVD-----YIGKPNNIVNPEEEAV---DSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQ-LHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQT---SVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLL----EDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCP 2396
E +F+ SF + +LHPHL+ TL+ + ++ T++Q++ IP L +G+D L++S TGSGKTLSYA+PL+ SLQ+I P ++R G A+VI PTRELAVQT + KL PF IV G+L+GG K + +K +RKG+NIL+STP RL+ H++ + + + ++WL++DEADR +LG+ +++ ++ + + Q VL+SATLT GV LA + LK+PV +V ++ V + EA +SF++P L+ + +V P+K+R+V L +F+L KCK KV+VF+++ + VEF + LF L + L FQ LHG M+ ++R VF+ FSA +G LL TDV +RGLD+ + W+VQY PP + +Y+HRVGRTAR G +G +LLFL PAE +I+ L S+ + +Q++ +++ G ++ S+ +E+ + A +L E+ V SD A+ +S +R+YT + ++ F R LHLGH AKS + P +S P
Sbjct: 179 EKIFTSDSFSEL-DLHPHLVATLNKVLNVSTLTSVQKQTIPVLQSGRDALVRSQTGSGKTLSYAVPLVQSLQSIQPKVSRSDGPLALVIVPTRELAVQTFQIFQKLLKPFTWIVPGVLMGGEKRKAEKARIRKGINILVSTPGRLVDHIKHTLSIAFSAVRWLVLDEADRTLDLGFDKDLTVILNSLNSTG--PARQNVLLSATLTLGVSRLADVCLKDPVSIQVSGPSSSSDHTGSSHVTSDTEAANTSESFAVPEALRQFAVVVPSKIRLVCLAAFVLDKCK----DNKVIVFVSSCEAVEFLHSLFTSVLTRPAAYPRLS---------------FQRLHGNMKQEERSEVFQLFSASQSGVLLCTDVAARGLDLPLVTWIVQYTPPSSAAEYVHRVGRTARIGGRGSSLLFLTPAETAFISELANHNISLSEMKLQEILSCLMLDDTYRGRGKYYSKTSSKALEQEVRERATVLQTEFENFVHSDAQSLQAAKKALQSYLRAYTTYPAHLKHIFHIRFLHLGHAAKSFGLRDAPGGLSSALGSKGP 706
BLAST of RNA helicase vs. Ensembl Medaka
Match: ddx31 (DEAD-box helicase 31 [Source:NCBI gene;Acc:101158115]) HSP 1 Score: 372.474 bits (955), Expect = 4.054e-116 Identity = 207/550 (37.64%), Postives = 323/550 (58.73%), Query Frame = 3
Query: 795 EPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVD-----YIGKPNNIVNPEEEAV---DSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQ-LHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQT---SVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLL----EDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCP 2396
E +F+ SF + +LHPHL+ TL+ + ++ T++Q++ IP L +G+D L++S TGSGKTLSYA+PL+ SLQ+I P ++R G A+VI PTRELAVQT + KL PF IV G+L+GG K + +K +RKG+NIL+STP RL+ H++ + + + ++WL++DEADR +LG+ +++ ++ + + Q VL+SATLT GV LA + LK+PV +V ++ V + EA +SF++P L+ + +V P+K+R+V L +F+L KCK KV+VF+++ + VEF + LF L + L FQ LHG M+ ++R VF+ FSA +G LL TDV +RGLD+ + W+VQY PP + +Y+HRVGRTAR G +G +LLFL PAE +I+ L S+ + +Q++ +++ G ++ S+ +E+ + A +L E+ V SD A+ +S +R+YT + ++ F R LHLGH AKS + P +S P
Sbjct: 179 EKIFTSDSFSEL-DLHPHLVATLNKVLNVSTLTSVQKQTIPVLQSGRDALVRSQTGSGKTLSYAVPLVQSLQSIQPKVSRSDGPLALVIVPTRELAVQTFQIFQKLLKPFTWIVPGVLMGGEKRKAEKARIRKGINILVSTPGRLVDHIKHTLSIAFSAVRWLVLDEADRTLDLGFDKDLTVILNSLNSTG--PARQNVLLSATLTLGVSRLADVCLKDPVSIQVSGPSSSSDHTGSSHVTSDTEAANTSESFAVPEALRQFAVVVPSKIRLVCLAAFVLDKCK----DNKVIVFVSSCEAVEFLHSLFTSVLTRPAAYPRLS---------------FQRLHGNMKQEERSEVFQLFSASQSGVLLCTDVAARGLDLPLVTWIVQYTPPSSAAEYVHRVGRTARIGGRGSSLLFLTPAETAFISELANHNISLSEMKLQEILSCLMLDDTYRGRGKYYSKTSSKALEQEVRERATVLQTEFENFVHSDAQSLQAAKKALQSYLRAYTTYPAHLKHIFHIRFLHLGHAAKSFGLRDAPGGLSSALGSKGP 706
BLAST of RNA helicase vs. Ensembl Medaka
Match: ddx31 (DEAD-box helicase 31 [Source:NCBI gene;Acc:101158115]) HSP 1 Score: 349.362 bits (895), Expect = 7.319e-108 Identity = 195/517 (37.72%), Postives = 302/517 (58.41%), Query Frame = 3
Query: 894 AIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVD-----YIGKPNNIVNPEEEAV---DSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQ-LHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQT---SVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLL----EDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCP 2396
++Q++ IP L +G+D L++S TGSGKTLSYA+PL+ SLQ+I P ++R G A+VI PTRELAVQT + KL PF IV G+L+GG K + +K +RKG+NIL+STP RL+ H++ + + + ++WL++DEADR +LG+ +++ ++ + + Q VL+SATLT GV LA + LK+PV +V ++ V + EA +SF++P L+ + +V P+K+R+V L +F+L KCK KV+VF+++ + VEF + LF L + L FQ LHG M+ ++R VF+ FSA +G LL TDV +RGLD+ + W+VQY PP + +Y+HRVGRTAR G +G +LLFL PAE +I+ L S+ + +Q++ +++ G ++ S+ +E+ + A +L E+ V SD A+ +S +R+YT + ++ F R LHLGH AKS + P +S P
Sbjct: 171 SVQKQTIPVLQSGRDALVRSQTGSGKTLSYAVPLVQSLQSIQPKVSRSDGPLALVIVPTRELAVQTFQIFQKLLKPFTWIVPGVLMGGEKRKAEKARIRKGINILVSTPGRLVDHIKHTLSIAFSAVRWLVLDEADRTLDLGFDKDLTVILNSLNSTG--PARQNVLLSATLTLGVSRLADVCLKDPVSIQVSGPSSSSDHTGSSHVTSDTEAANTSESFAVPEALRQFAVVVPSKIRLVCLAAFVLDKCK----DNKVIVFVSSCEAVEFLHSLFTSVLTRPAAYPRLS---------------FQRLHGNMKQEERSEVFQLFSASQSGVLLCTDVAARGLDLPLVTWIVQYTPPSSAAEYVHRVGRTARIGGRGSSLLFLTPAETAFISELANHNISLSEMKLQEILSCLMLDDTYRGRGKYYSKTSSKALEQEVRERATVLQTEFENFVHSDAQSLQAAKKALQSYLRAYTTYPAHLKHIFHIRFLHLGHAAKSFGLRDAPGGLSSALGSKGP 666
BLAST of RNA helicase vs. Ensembl Medaka
Match: ddx18 (DEAD-box helicase 18 [Source:NCBI gene;Acc:101158147]) HSP 1 Score: 259.225 bits (661), Expect = 2.633e-75 Identity = 179/521 (34.36%), Postives = 266/521 (51.06%), Query Frame = 3
Query: 801 VFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARA-GSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETP 2360
F D +FE ++L M T IQ K + PLL G+DVL + TGSGKTL++ IP I + + +G I++SPTRELA+QT VL +L V G+++GG + + L G+NIL++TP RLL HL+ + G NLQ LIIDEADRI E+G+ E ++Q+++ + K+R QT+L SAT T+ VE+LA ++LK E Y+G +N N VD GL+ +VCP++ R + L +FL K K++VF ++ V+FHY+L + +LP + +HG + KR F F +G LL TDV +RGLD+ ++W++QY PP +P +YIHRVGRTAR +G ALL L+P E+ ++ L+ + KV L S E + ++++ LE + + L A+ YKS VR+Y S ++Q + L+L VA S P
Sbjct: 145 AFEDTAFESLADLVSEGTLKGVKEMGFQHMTEIQHKTVRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLK--FMPRNGTGVIILSPTRELAMQTYGVLKELMTHHVH-TYGLIMGGSNRSAEAQRLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKRR-----QTMLFSATQTRRVEDLARISLKK----EPLYVGVDDNKDNA---TVD------GLEQGYVVCPSEKRFLLLFTFLKKNRK-----KKLMVFFSSCMSVKFHYELLNYI--------DLP--------------VMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIIQYDPPDDPKEYIHRVGRTARGIDGRGHALLILRPEELGFLRFLKQA-------KVPL-SEFEFSWSKISDIQSQ----------------LEKLIEKNYYLHKSAQEAYKSYVRAYDSHS--LKQIYSVNTLNLPMVALSFGFKVPP 591
BLAST of RNA helicase vs. Ensembl Medaka
Match: ddx55 (DEAD-box helicase 55 [Source:NCBI gene;Acc:101161657]) HSP 1 Score: 207.608 bits (527), Expect = 3.061e-57 Identity = 139/412 (33.74%), Postives = 219/412 (53.16%), Query Frame = 3
Query: 834 ELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALR-KGLNILISTPNRL--LYHLEKSEGLKL----NNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHL 2048
+LH +++TL + ++ T T +Q +P ++ KDV ++ TGSGKTL++ IP+I L + + ++ V A+VI+PTRELA+Q +V+ F +L+GG L+ +G NI+I+TP RL ++ KSEGL L +L L++DEADR+ ++G+ ++ ++ + KQR+ T L SAT T+ +E L L+NPVR V G A + P L +Y VC + L++FL + KH K +VF +T VEF+ + + +R V + +HG M+ +KR ++F +F +G L+ TDV +RG+D+ +NWV+QY PP ++HR GRTAR G+ G AL+FL P E Y+N L
Sbjct: 15 KLHEGILETLRE-LRFTHMTPVQAACVPLFMSNKDVAAEAVTGSGKTLAFVIPIIELLLKREEKL-KKMQVGALVITPTRELALQISEVMETFLRRFPEFTQILLVGGSNPAEDVDRLKDRGGNIVIATPGRLEDMFR-RKSEGLDLASAVRSLDVLVLDEADRLLDMGFESSLNTILSFLPKQRR-----TGLFSATQTQELEKLVRAGLRNPVRITVKEKGL--------AAAAPAQKTPSRLSNYYTVCRADEKFNHLVAFL----RQHKHE-KQLVFFSTCACVEFYGRALELLVRK--------------------VPVCCIHGKMK-NKRNSIFADFRKLKSGILVCTDVMARGVDIPDVNWVLQYDPPSRASAFVHRCGRTARIGNYGNALVFLLPMEETYVNFL 384
BLAST of RNA helicase vs. Planmine SMEST
Match: SMESG000017301.1 (SMESG000017301.1) HSP 1 Score: 1483 bits (3838), Expect = 0.000e+0 Identity = 715/719 (99.44%), Postives = 718/719 (99.86%), Query Frame = 3
Query: 399 MDLMLNLSMDPIPKKKPFSKVLKEQKTQLSDEVSFNKFSQLKDQSINNKKDLVEQIKNSESHVDDTKQNLINASQPHTKSHQQNNIDSKKHLKNYNTIDNKNKNPKSTLDLDEDANIKDMEKFLSSTKGVNSEPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDNDIEMTATNGKRRKCSEGAPEPPNHSSKRPKLDQAHRNMLAEFGL 2555
MDLMLNLSMDPIPKKKPFSKVLKEQKTQLSDEVSFNKFSQLKDQSINNKKDLVEQIKNSESHVDDTKQNLINASQPHTKSHQQNNIDSKKHLKNYNTIDNKNKNPKSTLDLDEDANIKDMEKFLSSTKGVNSEPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQA+DPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDNDIE+TATNGKRRKCS+GAPEP NHSSKRPKLDQAHRNMLAEFGL
Sbjct: 1 MDLMLNLSMDPIPKKKPFSKVLKEQKTQLSDEVSFNKFSQLKDQSINNKKDLVEQIKNSESHVDDTKQNLINASQPHTKSHQQNNIDSKKHLKNYNTIDNKNKNPKSTLDLDEDANIKDMEKFLSSTKGVNSEPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQALDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDNDIEITATNGKRRKCSKGAPEPSNHSSKRPKLDQAHRNMLAEFGL 719
BLAST of RNA helicase vs. Planmine SMEST
Match: SMESG000017301.1 (SMESG000017301.1) HSP 1 Score: 1478.38 bits (3826), Expect = 0.000e+0 Identity = 712/716 (99.44%), Postives = 715/716 (99.86%), Query Frame = 3
Query: 408 MLNLSMDPIPKKKPFSKVLKEQKTQLSDEVSFNKFSQLKDQSINNKKDLVEQIKNSESHVDDTKQNLINASQPHTKSHQQNNIDSKKHLKNYNTIDNKNKNPKSTLDLDEDANIKDMEKFLSSTKGVNSEPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDNDIEMTATNGKRRKCSEGAPEPPNHSSKRPKLDQAHRNMLAEFGL 2555
MLNLSMDPIPKKKPFSKVLKEQKTQLSDEVSFNKFSQLKDQSINNKKDLVEQIKNSESHVDDTKQNLINASQPHTKSHQQNNIDSKKHLKNYNTIDNKNKNPKSTLDLDEDANIKDMEKFLSSTKGVNSEPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQA+DPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDNDIE+TATNGKRRKCS+GAPEP NHSSKRPKLDQAHRNMLAEFGL
Sbjct: 1 MLNLSMDPIPKKKPFSKVLKEQKTQLSDEVSFNKFSQLKDQSINNKKDLVEQIKNSESHVDDTKQNLINASQPHTKSHQQNNIDSKKHLKNYNTIDNKNKNPKSTLDLDEDANIKDMEKFLSSTKGVNSEPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQALDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDNDIEITATNGKRRKCSKGAPEPSNHSSKRPKLDQAHRNMLAEFGL 716
BLAST of RNA helicase vs. Planmine SMEST
Match: SMESG000017301.1 (SMESG000017301.1) HSP 1 Score: 1468.75 bits (3801), Expect = 0.000e+0 Identity = 707/711 (99.44%), Postives = 710/711 (99.86%), Query Frame = 3
Query: 423 MDPIPKKKPFSKVLKEQKTQLSDEVSFNKFSQLKDQSINNKKDLVEQIKNSESHVDDTKQNLINASQPHTKSHQQNNIDSKKHLKNYNTIDNKNKNPKSTLDLDEDANIKDMEKFLSSTKGVNSEPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDNDIEMTATNGKRRKCSEGAPEPPNHSSKRPKLDQAHRNMLAEFGL 2555
MDPIPKKKPFSKVLKEQKTQLSDEVSFNKFSQLKDQSINNKKDLVEQIKNSESHVDDTKQNLINASQPHTKSHQQNNIDSKKHLKNYNTIDNKNKNPKSTLDLDEDANIKDMEKFLSSTKGVNSEPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQA+DPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDNDIE+TATNGKRRKCS+GAPEP NHSSKRPKLDQAHRNMLAEFGL
Sbjct: 1 MDPIPKKKPFSKVLKEQKTQLSDEVSFNKFSQLKDQSINNKKDLVEQIKNSESHVDDTKQNLINASQPHTKSHQQNNIDSKKHLKNYNTIDNKNKNPKSTLDLDEDANIKDMEKFLSSTKGVNSEPVFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQALDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPESQEAVLDNDIEITATNGKRRKCSKGAPEPSNHSSKRPKLDQAHRNMLAEFGL 711
BLAST of RNA helicase vs. Planmine SMEST
Match: SMESG000060345.1 (SMESG000060345.1) HSP 1 Score: 241.891 bits (616), Expect = 2.660e-70 Identity = 181/560 (32.32%), Postives = 278/560 (49.64%), Query Frame = 3
Query: 801 VFSDKSFEKYSELHPHLIKTLSDRMKITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEGLKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLT-------------------------KGVENLAGLALK-NPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQHYLLVCPTKLRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFLQPAEVNYINHLQTSVGGLHIQKVSLRSVMETALHHSGTLRTRKSAHTIEESIFLTAKLLEDHVSSDPILQSLARNGYKSLVRSYTCFSKEMRQFFCYRDLHLGHVAKSMACMETPREISRNCTRNCPES 2402
+ + +FE+ + ++ ++ K L D M + T IQ + IP LL KDV+ + TGSGKTL++ +PL+N + ++ G AI++SPTREL+VQT +VL KL + TG+LIGG Q++ K L++G+ IL++TP RLL HL ++ + LQ LIIDEADR+ E G+ E + ++ ++ K+RQ TVL SATL + V LA L++K N + ++ N+V + V S Q Y+ VC R L +F+ K++VFM+T V++ Y+LF++ +V + LHG KR F F+ A + TDV +RGLD+ ++WV+QY PP +P +YIHRVGRTARAG+ G+AL+FL+P E ++++ L + KV V E S L ++S I V S+ LQ A++G+ + VR+Y FS F L L +AK+ E P + ++ P+S
Sbjct: 12 IIINNNFEELN-INENIKKALKD-MNMIKMTPIQGRCIPHLLENKDVMGAAKTGSGKTLAFLVPLVN--KVLNSNFEPRHGTAAIIMSPTRELSVQTFEVLRKLV-VHTELRTGLLIGGNNRQVEAKYLQEGVTILVATPGRLLDHLNNTKFFLFHRLQTLIIDEADRLMEQGFLEEMTAIVRKLPKKRQ-----TVLFSATLKMSSAKLKMKMKKPEIDKRSSKVSTEEKVLTLACLSMKENCMLIDMSKEKLEANVVGGDNATVSQLS-----QGYV-VCKPSDRFRLLYTFI-----KKNQKKKIMVFMSTCLEVKYFYELFNII----------------------NVPVLALHGKQSQPKRLKNFEKFNENEAAIIFCTDVAARGLDIPLVDWVLQYDPPDDPKEYIHRVGRTARAGNAGQALIFLRPEETDFLSLLAKN-------KV---PVTEFEFDESKMLPIQESYEKI--------------VESNSALQHSAKSGFTTFVRAYCSFSLSC---FDVHKLDLAALAKTFGLKEPPHVMISVSGKSNPKS 501
BLAST of RNA helicase vs. Planmine SMEST
Match: SMESG000075674.1 (SMESG000075674.1) HSP 1 Score: 182.57 bits (462), Expect = 2.003e-47 Identity = 121/384 (31.51%), Postives = 196/384 (51.04%), Query Frame = 3
Query: 876 KITISTAIQEKAIPPLLNGKDVLIKSATGSGKTLSYAIPLINSLQAIDPPITRESGVYAIVISPTRELAVQTQDVLTKLSNPFVRIVTGMLIGGVKMQIQKKALRKGLNILISTPNRLLYHLEKSEG--LKLNNLQWLIIDEADRITELGYAENVRQVMEQIKKQRQLESLQTVLISATLTKGVENLAGLALKNPVRAEVDYIGKPNNIVNPEEEAVDSFSMPIGLQH-YLLVCPTK-LRMVALLSFLLLKCKYGKHTGKVVVFMATQDLVEFHYQLFHVFLRNKSLLQELPNTDNTEIDQSTSVDIFQLHGGMEHDKRQAVFRNFSACSAGFLLTTDVCSRGLDMSGINWVVQYHPPGNPIDYIHRVGRTARAGSKGKALLFL 2015
K+ T IQ + IP +++GKDV+ + TGSGKTLSY +PLI + P +T G AIV+ PTREL++Q + K++ + G + GG Q L++G+ I++ TP R++ + + G L L+ ++++DEADR+ ++G+ V ++ +I+ RQ TV+ SAT + +E +A +K P+ VD K V +QH YLL K L++V LLS K+ GK +VF+ TQ+ Q+ L ++ ++ +HGG+ +KR+ NF + + L+ T + +RGLD++ + VV Y P + DY+HR GRT RAG+KG + F+
Sbjct: 300 KMNEPTPIQSQTIPAIMSGKDVIGIAKTGSGKTLSYLLPLIRHIHN-QPNVTVGEGPIAIVLCPTRELSIQIHQEIEKITYALRDVNCGCIYGGADTAQQISRLKRGVEIVVGTPGRIIDIMATNGGRNLSLSRCTFIVLDEADRMFDMGFEPQVMAIISRIRPDRQ-----TVMFSATFPRRIEAVAKKIMKEPIEVRVDGGNKVCTDV---------------VQHVYLLDENDKFLKLVELLSEF-------KYRGKSLVFVETQETA----QILSSNLTHQGF------------------EVSMIHGGLTQEKREEGMFNFKSGTVPILIATSIAARGLDVNDLMMVVNYDCPNHYEDYVHRCGRTGRAGNKGYSYTFV 633 The following BLAST results are available for this feature:
BLAST of RNA helicase vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of RNA helicase vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of RNA helicase vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of RNA helicase vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of RNA helicase vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of RNA helicase vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of RNA helicase vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of RNA helicase vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of RNA helicase vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of RNA helicase vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of RNA helicase vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 5
BLAST of RNA helicase vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of RNA helicase vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of RNA helicase vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30025365 ID=SMED30025365|Name=RNA helicase|organism=Schmidtea mediterranea sexual|type=transcript|length=2586bpback to top protein sequence of SMED30025365-orf-1 >SMED30025365-orf-1 ID=SMED30025365-orf-1|Name=SMED30025365-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=720bp MDLMLNLSMDPIPKKKPFSKVLKEQKTQLSDEVSFNKFSQLKDQSINNKKback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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