Universal stress protein MSMEG_3950/MSMEI_3859
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30025317 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13Note: Hover over icons to view figure legend
Homology
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. UniProt/SwissProt
Match: sp|A0QZA1|Y3950_MYCS2 (Universal stress protein MSMEG_3950/MSMEI_3859 OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=MSMEG_3950 PE=1 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 7.097e-8 Identity = 41/139 (29.50%), Postives = 69/139 (49.64%), Query Frame = 3 Query: 378 IMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYAT-PAVGMMEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHA 791 I++ +DSS S A RW + + + +HV+ PV + PA M VL+ AI + +K+ + + E GL + I ++ L+ ++K Q ++++GNRG+G L R LGS S +LH+A Sbjct: 10 ILVGVDSSAESDAAVRWAAREASLHDAPITLMHVIAPVVVSWPAGPYM---ATVLECQEENARHAIEQAQKVVADCLGETH--GLTVQTEIRKESV-ARTLIDASKSAQ--MVVVGNRGMGALGRVLLGSTSTSLLHYA 140
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. UniProt/SwissProt
Match: sp|P74148|Y1388_SYNY3 (Universal stress protein Sll1388 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1388 PE=3 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 7.325e-8 Identity = 36/155 (23.23%), Postives = 72/155 (46.45%), Query Frame = 3 Query: 363 MAKRSIMIPIDSSEHSKRAFRWYIK-NMKQPNDLVLF---------IHVVEPVYATPAVGMMEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHI 797 M I++ +D SE +K + I K+ + L++F + + Y A+G + + +E+ E ++ Q + + ++ G+ + + V +PG + AK+ AD++++G RG+ L FLGSVS +++HH Sbjct: 1 MGYGKILVALDRSELAKEVLQQAIALGQKESSQLMVFYCIPVDSQDLSIYPSFYGEAAIGFSQI-------IKEHLEEQQTEAREWLQSIVQQVQEDGVACEWDVKVG-EPGRWIRDMAKNWDADLVVLGRRGLKGLAEVFLGSVSSYVIHHVQC 147
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. UniProt/SwissProt
Match: sp|Q8LGG8|USPAL_ARATH (Universal stress protein A-like protein OS=Arabidopsis thaliana OX=3702 GN=At3g01520 PE=1 SV=2) HSP 1 Score: 51.9878 bits (123), Expect = 8.917e-7 Identity = 34/143 (23.78%), Postives = 67/143 (46.85%), Query Frame = 3 Query: 408 SKRAFRWYIKNMKQPNDL---VLFIHV----------VEPVYATPAVGMMEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHI 797 KRAF W ++ + + N +L +HV V+ +YA+P +D M + +G L + F+++ + G+ +A+I P + + K + D +++G+RG+G ++ F+G+VS + HA Sbjct: 27 CKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASP------------EDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKT-GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAEC 156
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. UniProt/SwissProt
Match: sp|Q57951|Y531_METJA (Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0531 PE=3 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 8.990e-7 Identity = 41/144 (28.47%), Postives = 73/144 (50.69%), Query Frame = 3 Query: 372 RSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGMMEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIH---VDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAH 794 + I+IP D S+ S A + I K+ + V I+VV+ +P VG+ P + +S ++++ GQE + + K E IH ++ P +V+ A+ +AD+I++G G L R LGSV++ ++ +AH Sbjct: 27 KKIVIPTDGSDVSLEAAKHAINIAKEFDAEVYAIYVVD---VSPFVGL--PAEGSWELISELLKEE-------GQEALKKVKKMAEEWGVKIHTEMLEGVPANEIVEFAEKKKADLIVMGTTGKTGLERILLGSVAERVIKNAH 158
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. TrEMBL
Match: A0A448X5I9 (Usp domain-containing protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS22031 PE=4 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 2.773e-65 Identity = 97/143 (67.83%), Postives = 125/143 (87.41%), Query Frame = 3 Query: 372 RSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGM-MEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHI 797 R+I+IPID SEHS RAF WYI+N+K+ D V IHV+EPVY TPAVG+ ME PP+++DDM+R+ME++I GKKLGQ+FM +AK+ G++ KAF+HVDTKPG ALVKS+ DH+AD+I++GNRG+GTLRRTFLGSVSDH+LHH+HI Sbjct: 33 RNILIPIDGSEHSDRAFVWYIENLKKAGDCVHLIHVIEPVYTTPAVGLAMESPPLLVDDMTRVMEESIESGKKLGQQFMRKAKEFGVDSKAFLHVDTKPGHALVKSSIDHKADIIVMGNRGLGTLRRTFLGSVSDHVLHHSHI 175
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. TrEMBL
Match: A0A0R3U2V2 (Usp domain-containing protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS832 PE=4 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 5.542e-62 Identity = 88/143 (61.54%), Postives = 124/143 (86.71%), Query Frame = 3 Query: 372 RSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGM-MEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHI 797 R ++ PID+S++ +RAF+WY N+++PNDLV F+HV+EPVY TPA+G+ ME PP+++DDM+R+ME++I GKKLGQ++M AKD +E KAF+HVDTKPGAA+VKSA DH+AD+I+IG+RG+G ++RTFLGSVSD+I+H+A I Sbjct: 5 RRVLFPIDASDNCQRAFKWYEVNLRKPNDLVYFVHVIEPVYTTPAIGLAMESPPLMVDDMTRVMEESIAAGKKLGQKYMQMAKDENIECKAFLHVDTKPGAAIVKSATDHKADIIVIGSRGLGAIKRTFLGSVSDYIVHNASI 147
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. TrEMBL
Match: A0A183QRF3 (Usp domain-containing protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 1.845e-61 Identity = 92/145 (63.45%), Postives = 121/145 (83.45%), Query Frame = 3 Query: 366 AKRSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGM-MEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHI 797 + R I+IPID S+H RAFRWY++NMK+ D + F+HV+EPVY TPA+GM ME PPI DM+R+ME++I +GKKLGQ++MHEAK L KAF+HVDTKPG++LVK+ DH+A+VI++GNRG+G +RRTFLGSVSD++LHHAHI Sbjct: 7 SSRVILIPIDGSDHCDRAFRWYLENMKRDTDCITFVHVIEPVYNTPAIGMTMESPPI--PDMTRVMEESIEQGKKLGQKYMHEAKSYKLNAKAFLHVDTKPGSSLVKAISDHKANVILMGNRGLGAIRRTFLGSVSDYVLHHAHI 149
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. TrEMBL
Match: A0A094ZGI8 (Universal stress protein OS=Schistosoma haematobium OX=6185 GN=MS3_01096 PE=4 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 4.248e-61 Identity = 92/145 (63.45%), Postives = 121/145 (83.45%), Query Frame = 3 Query: 366 AKRSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGM-MEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHI 797 + R I+IPID S+H RAFRWY++NMK+ D + F+HV+EPVY TPA+GM ME PPI DM+R+ME++I +GKKLGQ++MHEAK L KAF+HVDTKPG++LVK+ DH+A+VI++GNRG+G +RRTFLGSVSD++LHHAHI Sbjct: 7 SSRVILIPIDGSDHCDRAFRWYLENMKRDTDCITFVHVIEPVYNTPAIGMTMESPPI--PDMTRVMEESIEQGKKLGQKYMHEAKSHKLNAKAFLHVDTKPGSSLVKAISDHKANVILMGNRGLGAIRRTFLGSVSDYVLHHAHI 149
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. TrEMBL
Match: A0A183K3A8 (Usp domain-containing protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS9473 PE=4 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 4.683e-61 Identity = 92/145 (63.45%), Postives = 121/145 (83.45%), Query Frame = 3 Query: 366 AKRSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGM-MEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHI 797 + R I+IPID S+H RAFRWY++NMK+ D + F+HV+EPVY TPA+GM ME PPI DM+R+ME++I +GKKLGQ++MHEAK L KAF+HVDTKPG++LVK+ DH+A+VI++GNRG+G +RRTFLGSVSD++LHHAHI Sbjct: 7 SSRVILIPIDGSDHCDRAFRWYLENMKRDTDCITFVHVIEPVYNTPAIGMTMESPPI--PDMTRVMEESIEQGKKLGQKYMHEAKSHKLNAKAFLHVDTKPGSSLVKAISDHKANVILMGNRGLGAIRRTFLGSVSDYVLHHAHI 149
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Nematostella
Match: EDO45800 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RRQ2]) HSP 1 Score: 110.153 bits (274), Expect = 2.705e-29 Identity = 53/142 (37.32%), Postives = 86/142 (60.56%), Query Frame = 3 Query: 372 RSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGMMEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHI 797 R I++PIDSS+HS+ AF WY+ NM D ++ +HV++ V +V D+ M + E K L +++ +A+ L+ K + KPG + + +KD D+I++G+RG+G++RRT LGSVSD++LHHAH+ Sbjct: 10 RRILLPIDSSKHSEDAFEWYVNNMHHEEDELILVHVLDSAAIQTRVS---SHGLVDDEFKNEMNKGLKEVKALEEKYKTKAETASLKAKIEVR-GGKPGETICQCSKDEHCDLILMGSRGLGSIRRTILGSVSDYVLHHAHV 147
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Nematostella
Match: EDO44746 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUS8]) HSP 1 Score: 107.457 bits (267), Expect = 2.922e-28 Identity = 52/143 (36.36%), Postives = 88/143 (61.54%), Query Frame = 3 Query: 369 KRSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGMMEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHI 797 KR ++IP+D S+HS+RAF WY +++ +P D VL IH E P+ ++ D+ ++ +++ I KKL +E+ + K+ G+ + F +PG + + AKD A +++G+RG GT+RRT LGSVSD+ +HH+ + Sbjct: 6 KRRVVIPVDGSQHSERAFNWYRQHVHEPGDEVLIIHTQEQP-TIPSSPYAYGGTVLPDEWNKAVDECIVNAKKLIEEYNKKCKEQGMTCRLF-KGSGQPGETICQLAKDLSAKHVVMGSRGCGTIRRTLLGSVSDYCVHHSSV 146
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Nematostella
Match: EDO33143 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7ST34]) HSP 1 Score: 97.4413 bits (241), Expect = 1.332e-24 Identity = 51/148 (34.46%), Postives = 85/148 (57.43%), Query Frame = 3 Query: 363 MAKRSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGMMEPPPIVL---DDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHI 797 M R I+IP+D SEHS+RAF WY + + P D VL +H +E P V + P V ++ S M+++ + + + + + K+ L + + V G + + A+D A++I++G RG G +RRT LGSVSD+++HH+H+ Sbjct: 1 MEGRKILIPVDGSEHSERAFDWYAELLHSPGDEVLVVHCIE----LPPVPLEHQFPFVFAYYEEWSAMVKETREQHEAMLRSYEDICKEKKLHYEIMMVVGKPAGDVICQVARDVSANLIVLGTRGQGMIRRTILGSVSDYVVHHSHL 144
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Nematostella
Match: EDO38142 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SDN9]) HSP 1 Score: 98.2117 bits (243), Expect = 1.493e-24 Identity = 60/156 (38.46%), Postives = 87/156 (55.77%), Query Frame = 3 Query: 366 AKRSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGMMEPPPI---VLDDMSRMMEDAINEGKKL----GQEFMHEAKDTGLEPKAFIHVDT-----KPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHI 797 KR +++ +D S +S RA++WY N+ Q DL+L IH E + PA P P ++ S +++ A +E K L G++ + E K IH KPG + K A+D A +II+G+RG+GTLRRTFLGS SD+ +HHAHI Sbjct: 8 CKRKVVLALDGSVNSMRAYQWYWDNIYQEGDLLLVIHAFE-LPTMPAA----PYPYGFAYYEEWSSLVQKADDEAKHLLEDCGRKCQEKICSIDPEKKKNIHFKLFKETGKPGEVVCKFAQDENAHLIIMGSRGLGTLRRTFLGSNSDYCVHHAHI 158
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Nematostella
Match: EDO44805 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUT2]) HSP 1 Score: 91.6633 bits (226), Expect = 2.828e-22 Identity = 53/145 (36.55%), Postives = 83/145 (57.24%), Query Frame = 3 Query: 372 RSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAV---GMMEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHI 797 R I+IP+D S+HS+RAF WY + + ND V +H +P A P G P +D + M+ +++ K + + + + KD+ ++ + PG + + AKD AD II+G+RG+GT+RRT +GSVS+ LHH HI Sbjct: 10 RKIVIPVDGSKHSERAFDWYKGALHRGNDEVFVVHAFDPYAAPPTPYPYGFAFP-----EDWEQHMKKTVDDAKSVMEYYEKKCKDSKMKC-TMLTKPGDPGETICEIAKDKNADQIIMGSRGLGTVRRTIVGSVSEFCLHHTHI 148
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Planmine SMEST
Match: SMESG000016283.1 (SMESG000016283.1) HSP 1 Score: 300.827 bits (769), Expect = 2.507e-103 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 3 Query: 363 MAKRSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGMMEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHIXXXXXXXEAK 827 MAKRSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGMMEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHIPVVVVPPEAK Sbjct: 1 MAKRSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGMMEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHIPVVVVPPEAK 155
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Planmine SMEST
Match: SMESG000022085.1 (SMESG000022085.1) HSP 1 Score: 171.4 bits (433), Expect = 2.068e-52 Identity = 79/142 (55.63%), Postives = 106/142 (74.65%), Query Frame = 3 Query: 372 RSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGMMEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHI 797 R +++P+D S++S+RAF WYI M + DL + I++VEPVYATP + E + D +S+ M+D I +GK+L Q F+H AK+ +E KAFIHVD KPG ALVK AK+H+ADVI++GNRGV L RTFLGSVSD+IL HAH+ Sbjct: 8 RVVLLPLDGSDNSERAFEWYIGQMHRRGDLAVLINIVEPVYATPPLNSAENSVLSNDSVSQQMQDIIEDGKQLTQRFLHMAKNANVEAKAFIHVDPKPGPALVKCAKEHRADVIVVGNRGVSKLHRTFLGSVSDYILQHAHL 149
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Planmine SMEST
Match: SMESG000039918.1 (SMESG000039918.1) HSP 1 Score: 147.517 bits (371), Expect = 3.416e-43 Identity = 65/144 (45.14%), Postives = 102/144 (70.83%), Query Frame = 3 Query: 366 AKRSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGMMEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHAHI 797 + R+I+IP+DSS+HS+RAF WY N+KQ D++ +H+VEP YAT A+ + + ++DM+ M+ A + K+L Q+++ A+D + K I+VD K G A++K A +++ ++IIGNRG+GTLRRT LGS SD IL+HA++ Sbjct: 6 SNRNILIPVDSSDHSRRAFEWYQANIKQEGDVLFLVHIVEPQYATSAISISDTIKFKMEDMTSKMDSASKKAKELLQKYIKLAEDDRIHTKGIINVDNKAGDAIIKIASENRVSLVIIGNRGIGTLRRTILGSTSDFILNHANV 149
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Planmine SMEST
Match: SMESG000020952.1 (SMESG000020952.1) HSP 1 Score: 145.591 bits (366), Expect = 1.738e-42 Identity = 65/143 (45.45%), Postives = 103/143 (72.03%), Query Frame = 3 Query: 366 AKRSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGM-MEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHA 791 +R I++P+D SEH++RA WY++N+ +PNDLV IH+VEP+Y + AVG+ ME + ++D+ ++ +++GK L ++F HE ++ G K ++ VD+K G A++K H+ D+II+ NRG G +RRTFLGSVSD++LHHA Sbjct: 9 VERVILMPVDRSEHTERAIDWYVENLMKPNDLVQMIHIVEPMYTSTAVGIGMEVAFLPVEDLESKIKKQLDKGKSLVKKFTHELQEKGGRAKGYVIVDSKVGEAIIKVCHTHKVDLIIVANRGEGLIRRTFLGSVSDYVLHHA 151
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Planmine SMEST
Match: SMESG000020882.1 (SMESG000020882.1) HSP 1 Score: 140.969 bits (354), Expect = 1.499e-40 Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = 3 Query: 366 AKRSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGM-MEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHA 791 ++R I+IPID SE S+RA WY NM + ND+V IH+VEP+Y T AVG+ ME + ++++ ++ I++GK L +E++ D G + K FI VD++ G ++ DH ADVI++ NRG G LRRTFLGSVSD++LHHA Sbjct: 17 SERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVEPIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHA 159 The following BLAST results are available for this feature:
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 4
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Universal stress protein MSMEG_3950/MSMEI_3859 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30025317 ID=SMED30025317|Name=Universal stress protein MSMEG_3950/MSMEI_3859|organism=Schmidtea mediterranea sexual|type=transcript|length=1062bpback to top protein sequence of SMED30025317-orf-1 >SMED30025317-orf-1 ID=SMED30025317-orf-1|Name=SMED30025317-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=156bp MAKRSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEPVYATPAVGback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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