Dimer_Tnp_hAT domain-containing protein

Overview
NameDimer_Tnp_hAT domain-containing protein
Smed IDSMED30025309
Length (bp)578
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Dimer_Tnp_hAT domain-containing protein (SMED30025309) t-SNE clustered cells

Violin plots show distribution of expression levels for Dimer_Tnp_hAT domain-containing protein (SMED30025309) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Dimer_Tnp_hAT domain-containing protein (SMED30025309) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Dimer_Tnp_hAT domain-containing protein (SMED30025309) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Homology
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851])

HSP 1 Score: 58.9214 bits (141), Expect = 7.725e-10
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  197 RKYDPMYLSLGFTYKVINGQE-RPLCLLCMNTLASDSMKPNKLKRHLESKVLINNHLTSLWKQF 385
            RKYDP Y+  GF   VI+G+  +P C++C + LA+++MKP+KLKRHL SK   +  ++S  K+F
Sbjct:  735 RKYDPSYIEFGFV-AVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLYSK---HKEISSQPKEF 794          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851])

HSP 1 Score: 58.9214 bits (141), Expect = 8.344e-10
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  197 RKYDPMYLSLGFTYKVINGQE-RPLCLLCMNTLASDSMKPNKLKRHLESKVLINNHLTSLWKQFL 388
            RKYDP Y+  GF   VI+G+  +P C++C + LA+++MKP+KLKRHL SK   +  ++S  K+F 
Sbjct:  735 RKYDPSYIEFGFV-AVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLYSK---HKEISSQPKEFF 795          

HSP 2 Score: 46.9802 bits (110), Expect = 7.974e-6
Identity = 25/79 (31.65%), Postives = 46/79 (58.23%), Query Frame = 2
Query:  347 LINNHLTSLWKQFLLYFKDLDMSKYE--WIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            +I+ HLT+L + F  YF   +  +    WI+NPF++ K D+  LT   Q+ ++ L++D  LK  F +  ++ + W++ K
Sbjct: 1177 VISEHLTNLLECFEFYFPSKEDPRIGNLWIQNPFLSSK-DNLNLTVTLQDKLLKLATDEGLKISFENTASLPSFWIKAK 1254          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851])

HSP 1 Score: 58.9214 bits (141), Expect = 9.057e-10
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  197 RKYDPMYLSLGFTYKVINGQE-RPLCLLCMNTLASDSMKPNKLKRHLESKVLINNHLTSLWKQFL 388
            RKYDP Y+  GF   VI+G+  +P C++C + LA+++MKP+KLKRHL SK   +  ++S  K+F 
Sbjct:  584 RKYDPSYIEFGFV-AVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLYSK---HKEISSQPKEFF 644          

HSP 2 Score: 47.3654 bits (111), Expect = 7.664e-6
Identity = 25/79 (31.65%), Postives = 46/79 (58.23%), Query Frame = 2
Query:  347 LINNHLTSLWKQFLLYFKDLDMSKYE--WIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            +I+ HLT+L + F  YF   +  +    WI+NPF++ K D+  LT   Q+ ++ L++D  LK  F +  ++ + W++ K
Sbjct: 1026 VISEHLTNLLECFEFYFPSKEDPRIGNLWIQNPFLSSK-DNLNLTVTLQDKLLKLATDEGLKISFENTASLPSFWIKAK 1103          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Match: ZBED5 (zinc finger BED-type containing 5 [Source:HGNC Symbol;Acc:HGNC:30803])

HSP 1 Score: 58.151 bits (139), Expect = 1.292e-9
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 2
Query:  185 KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343
            KPK RKYD  YLS GFTY          C+LC   L++ S+ P+KL+RHLE+K
Sbjct:  104 KPKRRKYDESYLSFGFTYFGNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETK 156          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Match: ZBED5 (zinc finger BED-type containing 5 [Source:HGNC Symbol;Acc:HGNC:30803])

HSP 1 Score: 58.151 bits (139), Expect = 1.292e-9
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 2
Query:  185 KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343
            KPK RKYD  YLS GFTY          C+LC   L++ S+ P+KL+RHLE+K
Sbjct:  104 KPKRRKYDESYLSFGFTYFGNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETK 156          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Mouse
Match: Zbed5 (zinc finger, BED type containing 5 [Source:MGI Symbol;Acc:MGI:1919220])

HSP 1 Score: 63.1586 bits (152), Expect = 2.010e-11
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 2
Query:  191 KYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343
            K RKY+  +L  GFT  +  G ERP C++C   L+++SMKPNKLKRH ESK
Sbjct:  165 KRRKYNEGFLQYGFTSTITVGIERPQCVICGVVLSAESMKPNKLKRHFESK 215          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. UniProt/SwissProt
Match: sp|Q6R2W3|SCND3_HUMAN (SCAN domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ZBED9 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 4.007e-9
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  197 RKYDPMYLSLGFTYKVINGQE-RPLCLLCMNTLASDSMKPNKLKRHLESKVLINNHLTSLWKQFL 388
            RKYDP Y+  GF   VI+G+  +P C++C + LA+++MKP+KLKRHL SK   +  ++S  K+F 
Sbjct:  735 RKYDPSYIEFGFV-AVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLYSK---HKEISSQPKEFF 795          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. UniProt/SwissProt
Match: sp|A4Z943|ZBED5_BOVIN (Zinc finger BED domain-containing protein 5 OS=Bos taurus OX=9913 GN=ZBED5 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 5.591e-9
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 2
Query:  185 KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343
            KPK RKYD  YLS GFTY          C+LC   L++ S+ P+KL+RHLE+K
Sbjct:  105 KPKRRKYDESYLSFGFTYFGNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETK 157          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. UniProt/SwissProt
Match: sp|A4Z944|ZBED5_CANLF (Zinc finger BED domain-containing protein 5 OS=Canis lupus familiaris OX=9615 GN=ZBED5 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 6.031e-9
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 2
Query:  185 KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343
            KPK RKYD  YLS GFTY          C+LC   L++ S+ P+KL+RHLE+K
Sbjct:  105 KPKRRKYDESYLSFGFTYFGNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETK 157          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. UniProt/SwissProt
Match: sp|Q49AG3|ZBED5_HUMAN (Zinc finger BED domain-containing protein 5 OS=Homo sapiens OX=9606 GN=ZBED5 PE=2 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 6.203e-9
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 2
Query:  185 KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343
            KPK RKYD  YLS GFTY          C+LC   L++ S+ P+KL+RHLE+K
Sbjct:  104 KPKRRKYDESYLSFGFTYFGNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETK 156          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A1A9UKT1 (Uncharacterized protein OS=Glossina austeni OX=7395 PE=4 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.067e-43
Identity = 75/81 (92.59%), Postives = 76/81 (93.83%), Query Frame = 2
Query:  335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            ESKVLINN LTSLWKQF LYFKDLDMSKYEWIRNPFV EKY  FGLTTAEQEMIIDLSSDSTLKQMFRDENNIVT+WLRVK
Sbjct:   60 ESKVLINNRLTSLWKQFSLYFKDLDMSKYEWIRNPFVVEKYYYFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTLWLRVK 140          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A1A9V2H8 (Uncharacterized protein OS=Glossina austeni OX=7395 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.665e-41
Identity = 72/81 (88.89%), Postives = 73/81 (90.12%), Query Frame = 2
Query:  335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            ESK LINNHLTSLWKQF LYFKDLDMSKYEWIRNPFV EK D FGLTTAEQEMIIDLS DSTLKQ+FRDENNIVT  LRVK
Sbjct:   16 ESKALINNHLTSLWKQFSLYFKDLDMSKYEWIRNPFVVEKDDYFGLTTAEQEMIIDLSCDSTLKQIFRDENNIVTFCLRVK 96          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A1B0A569 (Uncharacterized protein OS=Glossina pallidipes OX=7398 PE=4 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.052e-38
Identity = 69/81 (85.19%), Postives = 72/81 (88.89%), Query Frame = 2
Query:  335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            ESKVLINN LT++WKQF LY KDLDMSKYEWIRN FV EKYD FGLTTAEQEMIIDLSSDSTL QMF +ENNIVT WLRVK
Sbjct:   16 ESKVLINNDLTNVWKQFSLYSKDLDMSKYEWIRNQFVVEKYDYFGLTTAEQEMIIDLSSDSTLNQMFHNENNIVTFWLRVK 96          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A1A9VI02 (Uncharacterized protein OS=Glossina austeni OX=7395 PE=4 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.141e-37
Identity = 67/82 (81.71%), Postives = 71/82 (86.59%), Query Frame = 2
Query:  344 VLINNHL----TSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            ++I N L    + LWKQF LYFKDLD+SKYEWIRNPFV EKYD FGLTTAEQEMIIDLSSDSTLKQMFRDENNIVT WLRVK
Sbjct:   39 IIITNFLLMFSSVLWKQFSLYFKDLDVSKYEWIRNPFVVEKYDYFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTFWLRVK 120          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A1A9UE01 (Uncharacterized protein OS=Glossina austeni OX=7395 PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.198e-28
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 2
Query:  335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPF-VTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRD 541
            ESKVLINN+LTSLWKQF LYFK+ D+SK EWIRNPF   EKYD FG+TTAEQEMIIDLSSDSTLKQMFRD
Sbjct:  157 ESKVLINNYLTSLWKQFSLYFKNRDVSKCEWIRNPFEPIEKYDYFGVTTAEQEMIIDLSSDSTLKQMFRD 226          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000051422.1 (pep primary_assembly:Astyanax_mexicanus-2.0:15:35461191:35465166:-1 gene:ENSAMXG00000032672.1 transcript:ENSAMXT00000051422.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 57.7658 bits (138), Expect = 8.932e-10
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 2
Query:  164 NTSSQNCKPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343
            +T SQ   PK+  Y   YL+LGFT      +  PLC++C   LA++++KP KL+RHLE+K
Sbjct:   72 DTPSQFPFPKWTLYCSEYLALGFTCTGTENEPLPLCVVCSEVLANEALKPTKLRRHLETK 131          

HSP 2 Score: 49.2914 bits (116), Expect = 6.872e-7
Identity = 33/90 (36.67%), Postives = 46/90 (51.11%), Query Frame = 2
Query:  311 PNKLKRHLESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFG-LTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            PN + R       I  HL SL  Q   YF  LD+  + WI NPFV         L+ +E++ +IDLS DS LK +F  + ++V  WL  +
Sbjct:  519 PNAVSRP------IVEHLQSLKMQLRDYFPALDV-HFSWIENPFVDICQGAIASLSASEEDRLIDLSCDSALKLIF-SQKSLVNFWLHAR 600          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000044261.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000070.1:2279767:2281653:1 gene:ENSAMXG00000037161.1 transcript:ENSAMXT00000044261.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 55.0694 bits (131), Expect = 7.674e-9
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 2
Query:  185 KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343
            K K RKY   YL+LGFT      +  PLC++C   LA++++K  KL+RHLE+K
Sbjct:   36 KLKRRKYSSEYLALGFTCTGTENEPLPLCVVCSEVLANEALKTTKLRRHLETK 88          

HSP 2 Score: 51.6026 bits (122), Expect = 1.297e-7
Identity = 34/90 (37.78%), Postives = 47/90 (52.22%), Query Frame = 2
Query:  311 PNKLKRHLESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFG-LTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            PN + R       I  HL SL  Q   YF  LD+  + WI NPFV      F  L+ +E++ +IDLS DS LK +F  + ++V  WL  +
Sbjct:  476 PNAVSRP------IVEHLQSLKMQLRDYFPALDV-HFSWIENPFVDICQGAFASLSASEEDRLIDLSCDSALKFIF-SQKSLVNFWLHAR 557          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000035512.1 (pep primary_assembly:ASM223467v1:11:22712371:22714941:1 gene:ENSORLG00000026495.1 transcript:ENSORLT00000035512.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 78.5666 bits (192), Expect = 6.667e-17
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  137 KRKDDENIGNTSSQNC-KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESKVLINNH 361
            KRK + +  N ++ +  K K RKYD  Y++LGFT   +  +ERP+CLLC+  LA+DSMKPNKL+RHL  K L  NH
Sbjct:    9 KRKAERDADNETNVSLPKAKMRKYDEAYVALGFTVTTVGDEERPVCLLCLKMLAADSMKPNKLRRHL--KTLHPNH 82          

HSP 2 Score: 47.7506 bits (112), Expect = 2.162e-6
Identity = 27/76 (35.53%), Postives = 45/76 (59.21%), Query Frame = 2
Query:  350 INNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            I  H++SL   F  YF + + S+Y+W+R+PF       F  ++AE++  ID++SDSTL+  F  +  +   WL V+
Sbjct:  470 IKEHISSLIGFFKKYFPE-NSSQYDWVRDPFNAPAPTSF--SSAEEDQFIDMTSDSTLRLRFTSQ-TLSEFWLNVE 541          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000040389.1 (pep primary_assembly:ASM223467v1:19:265767:268275:-1 gene:ENSORLG00000025045.1 transcript:ENSORLT00000040389.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 78.5666 bits (192), Expect = 7.198e-17
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  137 KRKDDENIGNTSSQNC-KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESKVLINNH 361
            KRK + +  N ++ +  K K RKYD  Y++LGFT   +  +ERP+CLLC+  LA+DSMKPNKL+RHL  K L  NH
Sbjct:    9 KRKAERDADNETNVSLPKAKTRKYDEAYVALGFTVTTVGDEERPVCLLCLKMLAADSMKPNKLRRHL--KTLHPNH 82          

HSP 2 Score: 48.1358 bits (113), Expect = 1.987e-6
Identity = 27/76 (35.53%), Postives = 45/76 (59.21%), Query Frame = 2
Query:  350 INNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            I  H++SL   F  YF + + S+Y+W+R+PF       F  ++AE++  ID++SDSTL+  F  +  +   WL V+
Sbjct:  470 IKEHISSLIGFFKKYFPE-NSSQYDWVRDPFNAPAPTSF--SSAEEDQFIDMTSDSTLRLRFTSQ-TLSEFWLNVE 541          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000028620.1 (pep primary_assembly:ASM223467v1:3:35179252:35181570:1 gene:ENSORLG00000028714.1 transcript:ENSORLT00000028620.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 52.7582 bits (125), Expect = 4.783e-8
Identity = 27/70 (38.57%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  137 KRKDDENIGNTSSQNCKPKY-RKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343
            KRK++  + + +S + K K+ RKY+P ++  GF       + R  C+ C  TL+++++KP+KLKRHLE+K
Sbjct:   40 KRKNE--VQSYASPSSKAKFIRKYNPDFIKFGFVNGGSEAEPRAQCVECGLTLSNEALKPSKLKRHLETK 107          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000032459.1 (pep primary_assembly:ASM223467v1:8:14240678:14247355:1 gene:ENSORLG00000024991.1 transcript:ENSORLT00000032459.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 48.1358 bits (113), Expect = 1.769e-6
Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 2
Query:  197 RKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343
            RKY+P  ++ GF       + R  C+ C  TL+++++KP+KLKRHLE+K
Sbjct:   13 RKYNPDLINFGFVNGGSEAEPRAQCVECGLTLSNEALKPSKLKRHLETK 61          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000034374.1 (pep primary_assembly:ASM223467v1:1:33902242:33903496:-1 gene:ENSORLG00000022072.1 transcript:ENSORLT00000034374.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 47.7506 bits (112), Expect = 2.432e-6
Identity = 24/76 (31.58%), Postives = 44/76 (57.89%), Query Frame = 2
Query:  350 INNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            +N H+++L K F  YF   D ++Y+WIR+PF      +F  +T E +  I ++SDST++   + +  +   W+ V+
Sbjct:  272 MNAHISALQKHFQRYFPVQDPTQYDWIRDPFSATPPAEF--STTENKQFIYVTSDSTMRLQLKSK-TLAAFWIGVE 344          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000077403.1 (SMESG000077403.1)

HSP 1 Score: 155.992 bits (393), Expect = 5.100e-48
Identity = 75/81 (92.59%), Postives = 76/81 (93.83%), Query Frame = 2
Query:  335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            ESKVLINNHLTSLWKQF LYFKDLDMSKYEWIRNPFV EK DDFGLTTAEQE+IIDLSSDSTLKQMFRDENNIV  WLRVK
Sbjct:   51 ESKVLINNHLTSLWKQFSLYFKDLDMSKYEWIRNPFVIEKCDDFGLTTAEQEIIIDLSSDSTLKQMFRDENNIVMFWLRVK 131          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000059630.1 (SMESG000059630.1)

HSP 1 Score: 159.458 bits (402), Expect = 3.359e-47
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 2
Query:  335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            ESKVLINNHLTSLWKQF LYFKDLDMSKYEWIRNPFV EKYDDFGLTTAE+EMIIDLSSDST+KQMFRDENNIV  WLRVK
Sbjct:  250 ESKVLINNHLTSLWKQFSLYFKDLDMSKYEWIRNPFVIEKYDDFGLTTAEKEMIIDLSSDSTIKQMFRDENNIVMFWLRVK 330          

HSP 2 Score: 150.599 bits (379), Expect = 8.104e-44
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 2
Query:  119 EAEVEGKRKDDENIGNTSSQNCKPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLE 337
            EAE EGKRKDDEN GNTSSQN KPKYRKYDPMYLSLGFTY VINGQERPLCLLCMNTLASDSMKPNKLKRHLE
Sbjct:   14 EAEAEGKRKDDENTGNTSSQNSKPKYRKYDPMYLSLGFTYMVINGQERPLCLLCMNTLASDSMKPNKLKRHLE 86          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000003906.1 (SMESG000003906.1)

HSP 1 Score: 150.214 bits (378), Expect = 3.026e-46
Identity = 73/81 (90.12%), Postives = 74/81 (91.36%), Query Frame = 2
Query:  335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            ESKVLINNHL SLWKQF LYFKDLDMSKYEWIRN F  EKYDDFGL TAEQEMIIDLSSDSTLKQ+FRDENNIVT WLRVK
Sbjct:   16 ESKVLINNHLISLWKQFSLYFKDLDMSKYEWIRNQFGIEKYDDFGLKTAEQEMIIDLSSDSTLKQIFRDENNIVTFWLRVK 96          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000071565.1 (SMESG000071565.1)

HSP 1 Score: 160.614 bits (405), Expect = 1.571e-45
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 2
Query:  335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            ESKVLINNHL SLWKQF LYFKDLDMSKYEWIRNPFV EKY+DFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVT WLRVK
Sbjct:  122 ESKVLINNHLISLWKQFSLYFKDLDMSKYEWIRNPFVIEKYEDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTFWLRVK 202          
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000006260.1 (SMESG000006260.1)

HSP 1 Score: 148.673 bits (374), Expect = 3.727e-45
Identity = 73/81 (90.12%), Postives = 75/81 (92.59%), Query Frame = 2
Query:  335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577
            ESK LINNHLTSLWKQF LYFKDLD+SKYEWIRNPFV EKY DFGLT AEQEMIIDLSSDSTLKQMF+DENNIVT WLRVK
Sbjct:   51 ESKFLINNHLTSLWKQFSLYFKDLDISKYEWIRNPFVIEKY-DFGLTIAEQEMIIDLSSDSTLKQMFQDENNIVTFWLRVK 130          
The following BLAST results are available for this feature:
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ZBED97.725e-1046.88zinc finger BED-type containing 9 [Source:HGNC Sym... [more]
ZBED98.344e-1046.15zinc finger BED-type containing 9 [Source:HGNC Sym... [more]
ZBED99.057e-1046.15zinc finger BED-type containing 9 [Source:HGNC Sym... [more]
ZBED51.292e-950.94zinc finger BED-type containing 5 [Source:HGNC Sym... [more]
ZBED51.292e-950.94zinc finger BED-type containing 5 [Source:HGNC Sym... [more]
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Zbed52.010e-1154.90zinc finger, BED type containing 5 [Source:MGI Sym... [more]
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 4
Match NameE-valueIdentityDescription
sp|Q6R2W3|SCND3_HUMAN4.007e-946.15SCAN domain-containing protein 3 OS=Homo sapiens O... [more]
sp|A4Z943|ZBED5_BOVIN5.591e-950.94Zinc finger BED domain-containing protein 5 OS=Bos... [more]
sp|A4Z944|ZBED5_CANLF6.031e-950.94Zinc finger BED domain-containing protein 5 OS=Can... [more]
sp|Q49AG3|ZBED5_HUMAN6.203e-950.94Zinc finger BED domain-containing protein 5 OS=Hom... [more]
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1A9UKT11.067e-4392.59Uncharacterized protein OS=Glossina austeni OX=739... [more]
A0A1A9V2H82.665e-4188.89Uncharacterized protein OS=Glossina austeni OX=739... [more]
A0A1B0A5691.052e-3885.19Uncharacterized protein OS=Glossina pallidipes OX=... [more]
A0A1A9VI021.141e-3781.71Uncharacterized protein OS=Glossina austeni OX=739... [more]
A0A1A9UE011.198e-2884.29Uncharacterized protein OS=Glossina austeni OX=739... [more]
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSAMXT00000051422.18.932e-1045.00pep primary_assembly:Astyanax_mexicanus-2.0:15:354... [more]
ENSAMXT00000044261.17.674e-947.17pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000035512.16.667e-1751.32pep primary_assembly:ASM223467v1:11:22712371:22714... [more]
ENSORLT00000040389.17.198e-1751.32pep primary_assembly:ASM223467v1:19:265767:268275:... [more]
ENSORLT00000028620.14.783e-838.57pep primary_assembly:ASM223467v1:3:35179252:351815... [more]
ENSORLT00000032459.11.769e-642.86pep primary_assembly:ASM223467v1:8:14240678:142473... [more]
ENSORLT00000034374.12.432e-631.58pep primary_assembly:ASM223467v1:1:33902242:339034... [more]
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BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000077403.15.100e-4892.59SMESG000077403.1[more]
SMESG000059630.13.359e-4792.59SMESG000059630.1[more]
SMESG000003906.13.026e-4690.12SMESG000003906.1[more]
SMESG000071565.11.571e-4593.83SMESG000071565.1[more]
SMESG000006260.13.727e-4590.12SMESG000006260.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30025309 ID=SMED30025309|Name=Dimer_Tnp_hAT domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=578bp
CGGAACACCGGTTAAGAACCACTACACTAACAGAATCTTAAATTAATTTG
TTATTAGATTGTTAAAGATATTAATTAAGTTAATTACTTTAATTAATTAA
TAATTAAGAAAATTAAATGAAGCAGAAGTAGAGGGCAAAAGAAAAGATGA
TGAAAATATCGGAAATACATCTTCGCAAAATTGTAAACCTAAATATAGAA
AATATGATCCAATGTACTTATCATTAGGATTTACATATAAGGTTATTAAT
GGCCAAGAACGACCATTGTGTTTACTGTGTATGAATACTTTGGCCTCAGA
CAGCATGAAACCAAATAAATTAAAACGACATCTTGAAAGTAAAGTTCTTA
TTAATAATCATTTGACCAGTCTATGGAAGCAATTCTTGTTGTACTTTAAA
GATCTTGACATGTCCAAATATGAATGGATTAGAAACCCATTTGTGACTGA
AAAATATGATGATTTTGGCCTTACGACAGCAGAGCAGGAAATGATAATTG
ACTTATCTAGTGATAGCACATTAAAGCAGATGTTTCGAGATGAAAATAAT
ATTGTTACGGTTTGGCTACGAGTAAAGA
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protein sequence of SMED30025309-orf-1

>SMED30025309-orf-1 ID=SMED30025309-orf-1|Name=SMED30025309-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=122bp
MYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESKVLINNH
LTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSS
DSTLKQMFRDENNIVTVWLRVK
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0046983protein dimerization activity
GO:0003676nucleic acid binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000020protonephridia
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0002032epidermal cell