Dimer_Tnp_hAT domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Homology
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851]) HSP 1 Score: 58.9214 bits (141), Expect = 7.725e-10 Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 2 Query: 197 RKYDPMYLSLGFTYKVINGQE-RPLCLLCMNTLASDSMKPNKLKRHLESKVLINNHLTSLWKQF 385 RKYDP Y+ GF VI+G+ +P C++C + LA+++MKP+KLKRHL SK + ++S K+F Sbjct: 735 RKYDPSYIEFGFV-AVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLYSK---HKEISSQPKEF 794
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851]) HSP 1 Score: 58.9214 bits (141), Expect = 8.344e-10 Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 197 RKYDPMYLSLGFTYKVINGQE-RPLCLLCMNTLASDSMKPNKLKRHLESKVLINNHLTSLWKQFL 388 RKYDP Y+ GF VI+G+ +P C++C + LA+++MKP+KLKRHL SK + ++S K+F Sbjct: 735 RKYDPSYIEFGFV-AVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLYSK---HKEISSQPKEFF 795 HSP 2 Score: 46.9802 bits (110), Expect = 7.974e-6 Identity = 25/79 (31.65%), Postives = 46/79 (58.23%), Query Frame = 2 Query: 347 LINNHLTSLWKQFLLYFKDLDMSKYE--WIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 +I+ HLT+L + F YF + + WI+NPF++ K D+ LT Q+ ++ L++D LK F + ++ + W++ K Sbjct: 1177 VISEHLTNLLECFEFYFPSKEDPRIGNLWIQNPFLSSK-DNLNLTVTLQDKLLKLATDEGLKISFENTASLPSFWIKAK 1254
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851]) HSP 1 Score: 58.9214 bits (141), Expect = 9.057e-10 Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 197 RKYDPMYLSLGFTYKVINGQE-RPLCLLCMNTLASDSMKPNKLKRHLESKVLINNHLTSLWKQFL 388 RKYDP Y+ GF VI+G+ +P C++C + LA+++MKP+KLKRHL SK + ++S K+F Sbjct: 584 RKYDPSYIEFGFV-AVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLYSK---HKEISSQPKEFF 644 HSP 2 Score: 47.3654 bits (111), Expect = 7.664e-6 Identity = 25/79 (31.65%), Postives = 46/79 (58.23%), Query Frame = 2 Query: 347 LINNHLTSLWKQFLLYFKDLDMSKYE--WIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 +I+ HLT+L + F YF + + WI+NPF++ K D+ LT Q+ ++ L++D LK F + ++ + W++ K Sbjct: 1026 VISEHLTNLLECFEFYFPSKEDPRIGNLWIQNPFLSSK-DNLNLTVTLQDKLLKLATDEGLKISFENTASLPSFWIKAK 1103
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Match: ZBED5 (zinc finger BED-type containing 5 [Source:HGNC Symbol;Acc:HGNC:30803]) HSP 1 Score: 58.151 bits (139), Expect = 1.292e-9 Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 2 Query: 185 KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343 KPK RKYD YLS GFTY C+LC L++ S+ P+KL+RHLE+K Sbjct: 104 KPKRRKYDESYLSFGFTYFGNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETK 156
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Match: ZBED5 (zinc finger BED-type containing 5 [Source:HGNC Symbol;Acc:HGNC:30803]) HSP 1 Score: 58.151 bits (139), Expect = 1.292e-9 Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 2 Query: 185 KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343 KPK RKYD YLS GFTY C+LC L++ S+ P+KL+RHLE+K Sbjct: 104 KPKRRKYDESYLSFGFTYFGNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETK 156
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Mouse
Match: Zbed5 (zinc finger, BED type containing 5 [Source:MGI Symbol;Acc:MGI:1919220]) HSP 1 Score: 63.1586 bits (152), Expect = 2.010e-11 Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 2 Query: 191 KYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343 K RKY+ +L GFT + G ERP C++C L+++SMKPNKLKRH ESK Sbjct: 165 KRRKYNEGFLQYGFTSTITVGIERPQCVICGVVLSAESMKPNKLKRHFESK 215
BLAST of Dimer_Tnp_hAT domain-containing protein vs. UniProt/SwissProt
Match: sp|Q6R2W3|SCND3_HUMAN (SCAN domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ZBED9 PE=2 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 4.007e-9 Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 197 RKYDPMYLSLGFTYKVINGQE-RPLCLLCMNTLASDSMKPNKLKRHLESKVLINNHLTSLWKQFL 388 RKYDP Y+ GF VI+G+ +P C++C + LA+++MKP+KLKRHL SK + ++S K+F Sbjct: 735 RKYDPSYIEFGFV-AVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLYSK---HKEISSQPKEFF 795
BLAST of Dimer_Tnp_hAT domain-containing protein vs. UniProt/SwissProt
Match: sp|A4Z943|ZBED5_BOVIN (Zinc finger BED domain-containing protein 5 OS=Bos taurus OX=9913 GN=ZBED5 PE=4 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 5.591e-9 Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 2 Query: 185 KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343 KPK RKYD YLS GFTY C+LC L++ S+ P+KL+RHLE+K Sbjct: 105 KPKRRKYDESYLSFGFTYFGNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETK 157
BLAST of Dimer_Tnp_hAT domain-containing protein vs. UniProt/SwissProt
Match: sp|A4Z944|ZBED5_CANLF (Zinc finger BED domain-containing protein 5 OS=Canis lupus familiaris OX=9615 GN=ZBED5 PE=4 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 6.031e-9 Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 2 Query: 185 KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343 KPK RKYD YLS GFTY C+LC L++ S+ P+KL+RHLE+K Sbjct: 105 KPKRRKYDESYLSFGFTYFGNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETK 157
BLAST of Dimer_Tnp_hAT domain-containing protein vs. UniProt/SwissProt
Match: sp|Q49AG3|ZBED5_HUMAN (Zinc finger BED domain-containing protein 5 OS=Homo sapiens OX=9606 GN=ZBED5 PE=2 SV=2) HSP 1 Score: 58.151 bits (139), Expect = 6.203e-9 Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 2 Query: 185 KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343 KPK RKYD YLS GFTY C+LC L++ S+ P+KL+RHLE+K Sbjct: 104 KPKRRKYDESYLSFGFTYFGNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETK 156
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A1A9UKT1 (Uncharacterized protein OS=Glossina austeni OX=7395 PE=4 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.067e-43 Identity = 75/81 (92.59%), Postives = 76/81 (93.83%), Query Frame = 2 Query: 335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 ESKVLINN LTSLWKQF LYFKDLDMSKYEWIRNPFV EKY FGLTTAEQEMIIDLSSDSTLKQMFRDENNIVT+WLRVK Sbjct: 60 ESKVLINNRLTSLWKQFSLYFKDLDMSKYEWIRNPFVVEKYYYFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTLWLRVK 140
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A1A9V2H8 (Uncharacterized protein OS=Glossina austeni OX=7395 PE=4 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 2.665e-41 Identity = 72/81 (88.89%), Postives = 73/81 (90.12%), Query Frame = 2 Query: 335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 ESK LINNHLTSLWKQF LYFKDLDMSKYEWIRNPFV EK D FGLTTAEQEMIIDLS DSTLKQ+FRDENNIVT LRVK Sbjct: 16 ESKALINNHLTSLWKQFSLYFKDLDMSKYEWIRNPFVVEKDDYFGLTTAEQEMIIDLSCDSTLKQIFRDENNIVTFCLRVK 96
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A1B0A569 (Uncharacterized protein OS=Glossina pallidipes OX=7398 PE=4 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.052e-38 Identity = 69/81 (85.19%), Postives = 72/81 (88.89%), Query Frame = 2 Query: 335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 ESKVLINN LT++WKQF LY KDLDMSKYEWIRN FV EKYD FGLTTAEQEMIIDLSSDSTL QMF +ENNIVT WLRVK Sbjct: 16 ESKVLINNDLTNVWKQFSLYSKDLDMSKYEWIRNQFVVEKYDYFGLTTAEQEMIIDLSSDSTLNQMFHNENNIVTFWLRVK 96
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A1A9VI02 (Uncharacterized protein OS=Glossina austeni OX=7395 PE=4 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.141e-37 Identity = 67/82 (81.71%), Postives = 71/82 (86.59%), Query Frame = 2 Query: 344 VLINNHL----TSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 ++I N L + LWKQF LYFKDLD+SKYEWIRNPFV EKYD FGLTTAEQEMIIDLSSDSTLKQMFRDENNIVT WLRVK Sbjct: 39 IIITNFLLMFSSVLWKQFSLYFKDLDVSKYEWIRNPFVVEKYDYFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTFWLRVK 120
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: A0A1A9UE01 (Uncharacterized protein OS=Glossina austeni OX=7395 PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.198e-28 Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 2 Query: 335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPF-VTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRD 541 ESKVLINN+LTSLWKQF LYFK+ D+SK EWIRNPF EKYD FG+TTAEQEMIIDLSSDSTLKQMFRD Sbjct: 157 ESKVLINNYLTSLWKQFSLYFKNRDVSKCEWIRNPFEPIEKYDYFGVTTAEQEMIIDLSSDSTLKQMFRD 226
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000051422.1 (pep primary_assembly:Astyanax_mexicanus-2.0:15:35461191:35465166:-1 gene:ENSAMXG00000032672.1 transcript:ENSAMXT00000051422.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 57.7658 bits (138), Expect = 8.932e-10 Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 2 Query: 164 NTSSQNCKPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343 +T SQ PK+ Y YL+LGFT + PLC++C LA++++KP KL+RHLE+K Sbjct: 72 DTPSQFPFPKWTLYCSEYLALGFTCTGTENEPLPLCVVCSEVLANEALKPTKLRRHLETK 131 HSP 2 Score: 49.2914 bits (116), Expect = 6.872e-7 Identity = 33/90 (36.67%), Postives = 46/90 (51.11%), Query Frame = 2 Query: 311 PNKLKRHLESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFG-LTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 PN + R I HL SL Q YF LD+ + WI NPFV L+ +E++ +IDLS DS LK +F + ++V WL + Sbjct: 519 PNAVSRP------IVEHLQSLKMQLRDYFPALDV-HFSWIENPFVDICQGAIASLSASEEDRLIDLSCDSALKLIF-SQKSLVNFWLHAR 600
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000044261.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000070.1:2279767:2281653:1 gene:ENSAMXG00000037161.1 transcript:ENSAMXT00000044261.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 55.0694 bits (131), Expect = 7.674e-9 Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 2 Query: 185 KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343 K K RKY YL+LGFT + PLC++C LA++++K KL+RHLE+K Sbjct: 36 KLKRRKYSSEYLALGFTCTGTENEPLPLCVVCSEVLANEALKTTKLRRHLETK 88 HSP 2 Score: 51.6026 bits (122), Expect = 1.297e-7 Identity = 34/90 (37.78%), Postives = 47/90 (52.22%), Query Frame = 2 Query: 311 PNKLKRHLESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFG-LTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 PN + R I HL SL Q YF LD+ + WI NPFV F L+ +E++ +IDLS DS LK +F + ++V WL + Sbjct: 476 PNAVSRP------IVEHLQSLKMQLRDYFPALDV-HFSWIENPFVDICQGAFASLSASEEDRLIDLSCDSALKFIF-SQKSLVNFWLHAR 557
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000035512.1 (pep primary_assembly:ASM223467v1:11:22712371:22714941:1 gene:ENSORLG00000026495.1 transcript:ENSORLT00000035512.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 78.5666 bits (192), Expect = 6.667e-17 Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 2 Query: 137 KRKDDENIGNTSSQNC-KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESKVLINNH 361 KRK + + N ++ + K K RKYD Y++LGFT + +ERP+CLLC+ LA+DSMKPNKL+RHL K L NH Sbjct: 9 KRKAERDADNETNVSLPKAKMRKYDEAYVALGFTVTTVGDEERPVCLLCLKMLAADSMKPNKLRRHL--KTLHPNH 82 HSP 2 Score: 47.7506 bits (112), Expect = 2.162e-6 Identity = 27/76 (35.53%), Postives = 45/76 (59.21%), Query Frame = 2 Query: 350 INNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 I H++SL F YF + + S+Y+W+R+PF F ++AE++ ID++SDSTL+ F + + WL V+ Sbjct: 470 IKEHISSLIGFFKKYFPE-NSSQYDWVRDPFNAPAPTSF--SSAEEDQFIDMTSDSTLRLRFTSQ-TLSEFWLNVE 541
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000040389.1 (pep primary_assembly:ASM223467v1:19:265767:268275:-1 gene:ENSORLG00000025045.1 transcript:ENSORLT00000040389.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 78.5666 bits (192), Expect = 7.198e-17 Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 2 Query: 137 KRKDDENIGNTSSQNC-KPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESKVLINNH 361 KRK + + N ++ + K K RKYD Y++LGFT + +ERP+CLLC+ LA+DSMKPNKL+RHL K L NH Sbjct: 9 KRKAERDADNETNVSLPKAKTRKYDEAYVALGFTVTTVGDEERPVCLLCLKMLAADSMKPNKLRRHL--KTLHPNH 82 HSP 2 Score: 48.1358 bits (113), Expect = 1.987e-6 Identity = 27/76 (35.53%), Postives = 45/76 (59.21%), Query Frame = 2 Query: 350 INNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 I H++SL F YF + + S+Y+W+R+PF F ++AE++ ID++SDSTL+ F + + WL V+ Sbjct: 470 IKEHISSLIGFFKKYFPE-NSSQYDWVRDPFNAPAPTSF--SSAEEDQFIDMTSDSTLRLRFTSQ-TLSEFWLNVE 541
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000028620.1 (pep primary_assembly:ASM223467v1:3:35179252:35181570:1 gene:ENSORLG00000028714.1 transcript:ENSORLT00000028620.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 52.7582 bits (125), Expect = 4.783e-8 Identity = 27/70 (38.57%), Postives = 46/70 (65.71%), Query Frame = 2 Query: 137 KRKDDENIGNTSSQNCKPKY-RKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343 KRK++ + + +S + K K+ RKY+P ++ GF + R C+ C TL+++++KP+KLKRHLE+K Sbjct: 40 KRKNE--VQSYASPSSKAKFIRKYNPDFIKFGFVNGGSEAEPRAQCVECGLTLSNEALKPSKLKRHLETK 107
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000032459.1 (pep primary_assembly:ASM223467v1:8:14240678:14247355:1 gene:ENSORLG00000024991.1 transcript:ENSORLT00000032459.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 48.1358 bits (113), Expect = 1.769e-6 Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 197 RKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESK 343 RKY+P ++ GF + R C+ C TL+++++KP+KLKRHLE+K Sbjct: 13 RKYNPDLINFGFVNGGSEAEPRAQCVECGLTLSNEALKPSKLKRHLETK 61
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000034374.1 (pep primary_assembly:ASM223467v1:1:33902242:33903496:-1 gene:ENSORLG00000022072.1 transcript:ENSORLT00000034374.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 47.7506 bits (112), Expect = 2.432e-6 Identity = 24/76 (31.58%), Postives = 44/76 (57.89%), Query Frame = 2 Query: 350 INNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 +N H+++L K F YF D ++Y+WIR+PF +F +T E + I ++SDST++ + + + W+ V+ Sbjct: 272 MNAHISALQKHFQRYFPVQDPTQYDWIRDPFSATPPAEF--STTENKQFIYVTSDSTMRLQLKSK-TLAAFWIGVE 344
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000077403.1 (SMESG000077403.1) HSP 1 Score: 155.992 bits (393), Expect = 5.100e-48 Identity = 75/81 (92.59%), Postives = 76/81 (93.83%), Query Frame = 2 Query: 335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 ESKVLINNHLTSLWKQF LYFKDLDMSKYEWIRNPFV EK DDFGLTTAEQE+IIDLSSDSTLKQMFRDENNIV WLRVK Sbjct: 51 ESKVLINNHLTSLWKQFSLYFKDLDMSKYEWIRNPFVIEKCDDFGLTTAEQEIIIDLSSDSTLKQMFRDENNIVMFWLRVK 131
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000059630.1 (SMESG000059630.1) HSP 1 Score: 159.458 bits (402), Expect = 3.359e-47 Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 2 Query: 335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 ESKVLINNHLTSLWKQF LYFKDLDMSKYEWIRNPFV EKYDDFGLTTAE+EMIIDLSSDST+KQMFRDENNIV WLRVK Sbjct: 250 ESKVLINNHLTSLWKQFSLYFKDLDMSKYEWIRNPFVIEKYDDFGLTTAEKEMIIDLSSDSTIKQMFRDENNIVMFWLRVK 330 HSP 2 Score: 150.599 bits (379), Expect = 8.104e-44 Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 2 Query: 119 EAEVEGKRKDDENIGNTSSQNCKPKYRKYDPMYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLE 337 EAE EGKRKDDEN GNTSSQN KPKYRKYDPMYLSLGFTY VINGQERPLCLLCMNTLASDSMKPNKLKRHLE Sbjct: 14 EAEAEGKRKDDENTGNTSSQNSKPKYRKYDPMYLSLGFTYMVINGQERPLCLLCMNTLASDSMKPNKLKRHLE 86
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000003906.1 (SMESG000003906.1) HSP 1 Score: 150.214 bits (378), Expect = 3.026e-46 Identity = 73/81 (90.12%), Postives = 74/81 (91.36%), Query Frame = 2 Query: 335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 ESKVLINNHL SLWKQF LYFKDLDMSKYEWIRN F EKYDDFGL TAEQEMIIDLSSDSTLKQ+FRDENNIVT WLRVK Sbjct: 16 ESKVLINNHLISLWKQFSLYFKDLDMSKYEWIRNQFGIEKYDDFGLKTAEQEMIIDLSSDSTLKQIFRDENNIVTFWLRVK 96
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000071565.1 (SMESG000071565.1) HSP 1 Score: 160.614 bits (405), Expect = 1.571e-45 Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 2 Query: 335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 ESKVLINNHL SLWKQF LYFKDLDMSKYEWIRNPFV EKY+DFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVT WLRVK Sbjct: 122 ESKVLINNHLISLWKQFSLYFKDLDMSKYEWIRNPFVIEKYEDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTFWLRVK 202
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000006260.1 (SMESG000006260.1) HSP 1 Score: 148.673 bits (374), Expect = 3.727e-45 Identity = 73/81 (90.12%), Postives = 75/81 (92.59%), Query Frame = 2 Query: 335 ESKVLINNHLTSLWKQFLLYFKDLDMSKYEWIRNPFVTEKYDDFGLTTAEQEMIIDLSSDSTLKQMFRDENNIVTVWLRVK 577 ESK LINNHLTSLWKQF LYFKDLD+SKYEWIRNPFV EKY DFGLT AEQEMIIDLSSDSTLKQMF+DENNIVT WLRVK Sbjct: 51 ESKFLINNHLTSLWKQFSLYFKDLDISKYEWIRNPFVIEKY-DFGLTIAEQEMIIDLSSDSTLKQMFQDENNIVTFWLRVK 130 The following BLAST results are available for this feature:
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of Dimer_Tnp_hAT domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 4
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30025309 ID=SMED30025309|Name=Dimer_Tnp_hAT domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=578bpback to top protein sequence of SMED30025309-orf-1 >SMED30025309-orf-1 ID=SMED30025309-orf-1|Name=SMED30025309-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=122bp MYLSLGFTYKVINGQERPLCLLCMNTLASDSMKPNKLKRHLESKVLINNHback to top Annotated Terms
The following terms have been associated with this transcript:
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