SMED30025277

Overview
NameSMED30025277
Smed IDSMED30025277
Length (bp)3391
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30025277 (SMED30025277) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30025277 (SMED30025277) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30025277 (SMED30025277) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30025277 (SMED30025277) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30025277

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
gutSMED30025277h1SMcG0021444 dd_Smed_v4_6391_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30025277h1SMcG0021444 dd_Smed_v4_6391_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30025277h1SMcG0021444 dd_Smed_v4_6391_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30025277h1SMcG0021444 dd_Smed_v4_6391_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30025277h1SMcG0006424 OX_Smed_1.0.15442ox_Smed_v2PMID:24238224
Kao et al., 2013
whole organism asexual adult RNA-sequencing evidence
head regionSMED30025277h1SMcG0021444 OX_Smed_1.0.15442ox_Smed_v2PMID:24238224
Kao et al., 2013
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30025277 vs. Planmine SMEST
Match: SMESG000020509.1 (SMESG000020509.1)

HSP 1 Score: 2141.7 bits (5548), Expect = 0.000e+0
Identity = 1056/1063 (99.34%), Postives = 1059/1063 (99.62%), Query Frame = 3
Query:  150 MTTKTYCYQFSETKVFAPDSAPLSFQIKGNFAFVALNNYMVAVYDISISNIIPLNMFPVCGCVKKIDYCIFDDYIITLESKDHSDANNNLNNSIRTYHNWRNYEAQNKIRFRPALGTRASNSNTAHSDNSDKSRLSSEYSFIENVIEALEFLHLTHPTGFSVFSNGTQFSSTKNQMQNYEDANSNIAISENTYVHLYQFXXXXXXXXXXXXXXXPKLSQPKLSEIDSKLNETGACFQHLFTVNFSFIVANLDFLSQVLVAASSQKVQAIQVLEEKQKFDMFSFKMEKANLNSAKQIEIDIEKCWLSSISNERKMAASKPKLKPKEILGPTQNLDTASITLLRYADSKEMSFQTLLFRKYITGNTVKNIHLVKVTDFEKLGLFIVMKHEIVLYSFSLIANEVQKIAEYDFGTESVISMAFSENVNLIHVAFSNGDLATYNSRLCSDDLFQSSIISKRVSLTRLGKVTLMGLTDVKSNGLLVCACCKLNLTEENELDNAIIVSPDSWNFYLFSQPLKSDLKQSIVAHATYKGTRKHLQMLLCSLLVFPSKEEINFKTIKEMVICCLKCDSSYMEIVPSLLLRENMSIVDALKIFQEIETKELYNDNLFLLYARKKLIKANFSDLTENHFRWIVIKILNCSIDQLFHVIVTNDLEDFLKADLMTIEGIIPNTFRSAFIQILYYSAHTDYDLVEALLANLDQKELKKLLKSEPHLIYNKKHHTLFGWVLNLYNPQIYAKVVASCILNEITTGHEFTYIEIAKQVGQCSHILVLEEIFHSFLKNYGFILNSGKYCRSKFQNEKLRSLSFTSAMFDNSTKGANNNMDAYKNYINQLLLLYHEFSFNIIEFCPHKINQTCKKIPSWLKWFRYHVFLNQFYPFNGVDPFTSRHSSSDKNCPSMCCQSYLIRLQCLMSWKESFHLSGRNAIEASCESMNHPSWTSLNFLLFQHMPVDHRNIVEIISFVNLCEKRKDVNMIDLYFSAFGKEITVTEWKKLLENPCDKNLLKDLLKYATALLNLDEFLQIIFSLKESKRIENEEYNEWLERSGRFCHRKTIFSSILKQIIDESS 3338
            MTTKTYCYQFSETKVFAPDSAPLSFQIKGNFAFVALNNYMVAVYDISISNIIPLNMFPVCGCVKKIDYCIFDDYIITLESKDHSDANNNLNNSIRTYHNWRNYEAQNKIRFRPALGTRASNSNTAHSDNSDKSRLSSEYSFIENVIEALEFLHLTHPTGFSVFSNGTQFSSTKNQMQNYEDANSNIAISENTY+HLYQFSPSNRRSQSSHSTLSPKLSQPKLSEIDSKLNETGACFQHLFTVNFSFIVANLDFLSQVLVAASSQKVQAIQVLEEKQKFDMFSFKMEKANLNSAKQIEIDIEKCWLSSISNERKMAASKPKLKPKEILGPTQNLDTASITLLRYADSKEMSFQTLLFRKYITGN VKNIHLVKVTDFEKLGLFIVMKHEIVLYSFSLIANEVQKIAEYDFGTESVISMAFSENVNLIHVAFSNGDLATYNSRLCSDDLFQSSIISKRVSLTRLGKVTLMGLTDVKSNGLLVCACCKLNLTEENELD+AIIVSPDSWNFYLFSQPLKSDLKQSIVAHATYKGTRKHLQMLLCSLLVFPSKEEINFKTIKEMVICCLKCDSSYMEIVPSLLLRENMSI+DALKIFQEIETKELYNDNLFLLYARKKLIKANFSDLTENHFRWIVIKILNCSIDQLFHVIVTNDLEDFLKADLMTIEGIIPNTFRSAFIQILYYSAHTDYDLVEALLANLDQKELKKLLKSEPHLIYNKKHHTLFGWVLNLYNPQIYAKVVASCILNEITTGHEFTYIEIAKQVGQCSHILVLEEIFHSFLKNYGFI NSGKYCRSKFQNEKLRSLSFTSAMFDNSTKGANNNMDAYKNYINQLLLLYHEFSFNIIEFCPHKINQTCKKIPSWLKWFRYHVFLNQFYPFNGVDPFTS HSSSDKNCPSMCCQSYLIRLQCLMSWKESFHLSGRNAIEASCESMNHPSWTSLNFLLFQHMPVD RNIVEIISFVNLCEKRKDVNMIDLYFSAFGKEITVTEWKKLLENPCDKNLLKDLLKYATALLNLDEFLQIIFSLKESKRIENEEYNEWLERSGRFCHRKTIFSSILKQIIDESS
Sbjct:    1 MTTKTYCYQFSETKVFAPDSAPLSFQIKGNFAFVALNNYMVAVYDISISNIIPLNMFPVCGCVKKIDYCIFDDYIITLESKDHSDANNNLNNSIRTYHNWRNYEAQNKIRFRPALGTRASNSNTAHSDNSDKSRLSSEYSFIENVIEALEFLHLTHPTGFSVFSNGTQFSSTKNQMQNYEDANSNIAISENTYIHLYQFSPSNRRSQSSHSTLSPKLSQPKLSEIDSKLNETGACFQHLFTVNFSFIVANLDFLSQVLVAASSQKVQAIQVLEEKQKFDMFSFKMEKANLNSAKQIEIDIEKCWLSSISNERKMAASKPKLKPKEILGPTQNLDTASITLLRYADSKEMSFQTLLFRKYITGNIVKNIHLVKVTDFEKLGLFIVMKHEIVLYSFSLIANEVQKIAEYDFGTESVISMAFSENVNLIHVAFSNGDLATYNSRLCSDDLFQSSIISKRVSLTRLGKVTLMGLTDVKSNGLLVCACCKLNLTEENELDDAIIVSPDSWNFYLFSQPLKSDLKQSIVAHATYKGTRKHLQMLLCSLLVFPSKEEINFKTIKEMVICCLKCDSSYMEIVPSLLLRENMSIIDALKIFQEIETKELYNDNLFLLYARKKLIKANFSDLTENHFRWIVIKILNCSIDQLFHVIVTNDLEDFLKADLMTIEGIIPNTFRSAFIQILYYSAHTDYDLVEALLANLDQKELKKLLKSEPHLIYNKKHHTLFGWVLNLYNPQIYAKVVASCILNEITTGHEFTYIEIAKQVGQCSHILVLEEIFHSFLKNYGFIPNSGKYCRSKFQNEKLRSLSFTSAMFDNSTKGANNNMDAYKNYINQLLLLYHEFSFNIIEFCPHKINQTCKKIPSWLKWFRYHVFLNQFYPFNGVDPFTSPHSSSDKNCPSMCCQSYLIRLQCLMSWKESFHLSGRNAIEASCESMNHPSWTSLNFLLFQHMPVDDRNIVEIISFVNLCEKRKDVNMIDLYFSAFGKEITVTEWKKLLENPCDKNLLKDLLKYATALLNLDEFLQIIFSLKESKRIENEEYNEWLERSGRFCHRKTIFSSILKQIIDESS 1063          
The following BLAST results are available for this feature:
BLAST of SMED30025277 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025277 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025277 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025277 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025277 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025277 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025277 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025277 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025277 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025277 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025277 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025277 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025277 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025277 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000020509.10.000e+099.34SMESG000020509.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30025277 ID=SMED30025277|Name=SMED30025277|organism=Schmidtea mediterranea sexual|type=transcript|length=3391bp
CTTTTAAATTAGATTTCCGAATTAATTTTATTAAAATATTATTAATTTAT
ATAATTAAAGTTTTTCCTATGCAATTTAAATTAGAATTTTTTAAAATATT
TTTGAAATAAAAATTTTAATAATAAATTTAATGGAATAGTAATTTCATTA
TGACAACCAAAACGTATTGTTATCAATTTTCCGAAACAAAGGTTTTTGCT
CCAGATAGTGCACCACTTTCATTCCAAATCAAAGGGAATTTTGCCTTTGT
TGCTTTGAATAATTATATGGTTGCAGTTTATGACATAAGTATATCTAATA
TTATTCCTCTGAATATGTTTCCCGTTTGTGGATGCGTTAAAAAAATAGAT
TATTGTATATTTGATGATTATATTATTACTCTTGAAAGCAAAGATCATTC
CGATGCGAATAATAATTTGAATAATAGTATCCGAACTTATCACAATTGGA
GAAACTATGAAGCCCAAAATAAAATCAGATTCAGGCCAGCTTTAGGTACA
CGAGCTTCTAATAGCAATACTGCACATTCAGATAATTCTGACAAATCAAG
ATTGAGCAGTGAATATTCATTTATAGAAAATGTAATTGAAGCATTGGAAT
TTCTTCATCTAACTCATCCGACTGGGTTTTCAGTTTTTTCCAATGGTACA
CAATTTAGCAGCACAAAGAACCAGATGCAGAATTACGAGGACGCTAATTC
TAACATTGCTATCAGTGAAAACACATACGTCCATCTTTATCAATTCTCTC
CGTCTAATCGCCGTTCACAGTCAAGCCATTCGACATTGTCACCGAAATTA
TCACAACCAAAACTCAGTGAAATCGATTCAAAATTAAACGAAACTGGCGC
TTGTTTTCAACATTTGTTTACCGTCAATTTCAGTTTTATTGTTGCTAATC
TGGATTTCCTGTCGCAAGTTTTAGTGGCAGCCTCGTCTCAAAAAGTTCAG
GCAATACAAGTTCTTGAAGAAAAGCAAAAGTTTGATATGTTTTCTTTTAA
AATGGAAAAAGCAAATTTGAATTCCGCTAAACAAATTGAAATAGATATTG
AAAAGTGCTGGTTATCGTCAATTAGTAATGAAAGAAAAATGGCTGCATCA
AAACCAAAATTGAAACCAAAAGAAATTTTGGGTCCTACTCAAAATTTGGA
TACAGCATCAATTACTTTATTAAGATACGCCGATAGTAAAGAAATGAGTT
TTCAAACGCTTTTATTTCGGAAATACATCACCGGAAACACAGTGAAAAAT
ATTCATCTCGTAAAAGTAACTGATTTCGAAAAACTGGGATTATTTATTGT
TATGAAGCACGAAATAGTTCTCTATTCATTTTCTTTGATAGCAAATGAAG
TGCAAAAAATAGCTGAGTACGATTTTGGAACTGAGTCTGTGATTTCGATG
GCATTTTCGGAAAACGTAAATCTAATTCATGTGGCATTTTCAAATGGAGA
TCTTGCTACATATAATAGTCGACTTTGTTCTGATGATTTGTTTCAATCAA
GTATAATCTCTAAACGGGTCTCATTGACAAGATTGGGGAAAGTGACACTT
ATGGGTTTAACAGATGTGAAAAGCAATGGACTTCTGGTTTGTGCGTGTTG
CAAATTAAATTTGACAGAAGAAAATGAATTAGATAATGCAATAATTGTCA
GTCCCGATTCATGGAATTTCTATTTGTTTTCCCAGCCTTTGAAATCAGAT
CTTAAACAATCTATAGTGGCTCATGCTACATACAAAGGTACAAGAAAGCA
TTTACAAATGCTGCTATGTAGTTTGTTGGTTTTCCCATCTAAAGAAGAAA
TAAATTTTAAAACAATAAAAGAAATGGTAATTTGTTGTCTCAAATGCGAT
TCATCTTACATGGAAATAGTCCCGAGCCTCTTGCTACGAGAAAACATGTC
TATTGTTGATGCATTGAAAATTTTTCAGGAAATTGAAACTAAAGAATTGT
ACAATGACAATCTATTTCTGTTATATGCAAGAAAAAAATTAATTAAAGCA
AATTTTTCAGATCTGACTGAGAATCATTTTCGATGGATTGTGATCAAGAT
TCTTAATTGTTCAATTGATCAACTATTTCACGTTATAGTTACTAATGATC
TTGAAGATTTTCTGAAGGCAGATCTAATGACAATCGAAGGAATAATTCCT
AATACATTTCGATCAGCTTTTATCCAAATTCTATACTATTCCGCTCACAC
TGATTATGATCTTGTTGAAGCTCTTCTTGCTAATTTAGATCAAAAAGAAC
TGAAAAAACTCCTAAAATCTGAGCCCCATTTAATTTACAACAAAAAGCAT
CATACATTATTTGGATGGGTCTTGAATTTATATAATCCCCAGATCTATGC
CAAGGTAGTTGCATCTTGTATCTTAAATGAAATCACTACTGGACATGAAT
TTACATATATAGAGATAGCTAAACAAGTCGGTCAATGTTCTCATATATTG
GTTTTAGAAGAAATTTTCCACAGTTTTTTAAAAAACTATGGTTTTATTCT
TAATTCAGGTAAATATTGCAGAAGTAAATTTCAAAATGAAAAGCTAAGAA
GTCTTAGTTTTACAAGTGCAATGTTTGACAATTCTACAAAAGGTGCAAAT
AATAATATGGATGCATATAAGAATTATATTAACCAATTATTACTTCTTTA
TCATGAATTCAGTTTTAATATAATTGAATTTTGTCCTCACAAAATAAATC
AAACTTGTAAAAAGATTCCATCATGGTTAAAATGGTTTCGATATCACGTT
TTTCTCAATCAGTTTTATCCATTCAATGGAGTCGATCCGTTTACGTCTCG
ACACAGTTCGTCTGACAAAAACTGTCCATCAATGTGTTGCCAGAGTTATT
TGATAAGGTTACAATGTTTAATGAGCTGGAAGGAGTCGTTTCATTTATCT
GGAAGAAATGCCATTGAGGCATCATGTGAATCTATGAACCATCCTTCATG
GACCAGTCTAAATTTTTTATTATTTCAACATATGCCCGTGGATCATCGCA
ATATTGTAGAGATCATTTCATTTGTTAATTTATGCGAGAAGCGTAAAGAT
GTAAATATGATTGATCTATATTTCAGTGCTTTTGGTAAAGAAATCACTGT
AACAGAGTGGAAGAAACTTTTAGAAAATCCTTGTGATAAAAACCTTCTGA
AAGATTTGTTAAAATATGCAACAGCATTGTTAAATCTTGACGAATTCCTT
CAGATAATTTTTTCATTAAAAGAATCTAAAAGAATTGAAAATGAAGAATA
TAATGAATGGCTTGAACGATCTGGTCGTTTTTGTCACAGGAAGACAATTT
TTAGTTCGATTTTAAAGCAAATTATAGACGAATCATCATGATTATTTCCC
GTATTTTTTTATAATAAATTTTTCTTTTATTGAAAAAAAAA
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protein sequence of SMED30025277-orf-1

>SMED30025277-orf-1 ID=SMED30025277-orf-1|Name=SMED30025277-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1064bp
MTTKTYCYQFSETKVFAPDSAPLSFQIKGNFAFVALNNYMVAVYDISISN
IIPLNMFPVCGCVKKIDYCIFDDYIITLESKDHSDANNNLNNSIRTYHNW
RNYEAQNKIRFRPALGTRASNSNTAHSDNSDKSRLSSEYSFIENVIEALE
FLHLTHPTGFSVFSNGTQFSSTKNQMQNYEDANSNIAISENTYVHLYQFS
PSNRRSQSSHSTLSPKLSQPKLSEIDSKLNETGACFQHLFTVNFSFIVAN
LDFLSQVLVAASSQKVQAIQVLEEKQKFDMFSFKMEKANLNSAKQIEIDI
EKCWLSSISNERKMAASKPKLKPKEILGPTQNLDTASITLLRYADSKEMS
FQTLLFRKYITGNTVKNIHLVKVTDFEKLGLFIVMKHEIVLYSFSLIANE
VQKIAEYDFGTESVISMAFSENVNLIHVAFSNGDLATYNSRLCSDDLFQS
SIISKRVSLTRLGKVTLMGLTDVKSNGLLVCACCKLNLTEENELDNAIIV
SPDSWNFYLFSQPLKSDLKQSIVAHATYKGTRKHLQMLLCSLLVFPSKEE
INFKTIKEMVICCLKCDSSYMEIVPSLLLRENMSIVDALKIFQEIETKEL
YNDNLFLLYARKKLIKANFSDLTENHFRWIVIKILNCSIDQLFHVIVTND
LEDFLKADLMTIEGIIPNTFRSAFIQILYYSAHTDYDLVEALLANLDQKE
LKKLLKSEPHLIYNKKHHTLFGWVLNLYNPQIYAKVVASCILNEITTGHE
FTYIEIAKQVGQCSHILVLEEIFHSFLKNYGFILNSGKYCRSKFQNEKLR
SLSFTSAMFDNSTKGANNNMDAYKNYINQLLLLYHEFSFNIIEFCPHKIN
QTCKKIPSWLKWFRYHVFLNQFYPFNGVDPFTSRHSSSDKNCPSMCCQSY
LIRLQCLMSWKESFHLSGRNAIEASCESMNHPSWTSLNFLLFQHMPVDHR
NIVEIISFVNLCEKRKDVNMIDLYFSAFGKEITVTEWKKLLENPCDKNLL
KDLLKYATALLNLDEFLQIIFSLKESKRIENEEYNEWLERSGRFCHRKTI
FSSILKQIIDESS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000418head
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR001507ZP_dom
IPR029437HPS3_N
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029437Hermansky-Pudlak syndrome 3 protein, N-terminal domainPFAMPF14761HPS3_Ncoord: 7..123
e-value: 9.6E-16
score: 58.0