SMED30025195

Overview
NameSMED30025195
Smed IDSMED30025195
Length (bp)3067
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30025195 (SMED30025195) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30025195 (SMED30025195) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30025195 (SMED30025195) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30025195 (SMED30025195) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30025195

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30025195h1SMcG0018008 SmedASXL_009103SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
pharynxSMED30025195h1SMcG0018008 dd_Smed_v4_10480_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30025195h1SMcG0018008 dd_Smed_v4_10480_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30025195h1SMcG0018008 dd_Smed_v4_10480_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30025195h1SMcG0018008 dd_Smed_v6_10480_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
epidermisSMED30025195h1SMcG0018008 dd_Smed_v4_10480_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30025195 vs. Ensembl Mouse
Match: Tmem237 (transmembrane protein 237 [Source:MGI Symbol;Acc:MGI:2138365])

HSP 1 Score: 51.2174 bits (121), Expect = 5.533e-6
Identity = 55/227 (24.23%), Postives = 96/227 (42.29%), Query Frame = 2
Query:  407 VSQGPGDKVYIEGVRNFRVENHDKYLKSQQKLSEKQAEKLRINENDYDNDLMQCSIGVTNRFRIFATFLHGILAGMTLMHLVFCLVVGGTTQSSQQSYLILYTTLQQPFSIFNYVAFVIILISLWDRVDVG------------QPSPNCSQPQIGVLVALILTFIAFIINNSLYLYNQDFINFNTNSTSAYLSTLVTSFGTWKILDAVKSILLVISWFIVAMVPIFD 1051
            VSQ P  KV++E  R F+  +  + +K+ + +      K      D        ++ V   FR+   F HG LAG  + + V   V+ G   S+  + L  Y  L  PF    Y+   +  +S +DR D              +P+   S        ALIL+    + ++ ++LY +  +N +  +  A    LV     W I++ V ++L+ +SW  ++  P  D
Sbjct:  194 VSQ-PVGKVFVEKSRRFQAADRSELIKTTENIDVSMDVKPSWTTRD-------VALSVHRAFRMVGLFSHGFLAGCAVWNTVVIYVLAGDQLSNVSNLLQQYKPLAYPFQSLLYLLLALSTVSAFDRTDFAKISVAIRNFLALEPTALAS---FLYFTALILSLSQQMTSDRIHLY-EPSVNGSLWAAEAEEPILV----PWIIVNLVVALLVGLSWLFLSYRPGMD 404          
BLAST of SMED30025195 vs. Ensembl Mouse
Match: Tmem237 (transmembrane protein 237 [Source:MGI Symbol;Acc:MGI:2138365])

HSP 1 Score: 50.447 bits (119), Expect = 9.076e-6
Identity = 55/227 (24.23%), Postives = 96/227 (42.29%), Query Frame = 2
Query:  407 VSQGPGDKVYIEGVRNFRVENHDKYLKSQQKLSEKQAEKLRINENDYDNDLMQCSIGVTNRFRIFATFLHGILAGMTLMHLVFCLVVGGTTQSSQQSYLILYTTLQQPFSIFNYVAFVIILISLWDRVDVG------------QPSPNCSQPQIGVLVALILTFIAFIINNSLYLYNQDFINFNTNSTSAYLSTLVTSFGTWKILDAVKSILLVISWFIVAMVPIFD 1051
            VSQ P  KV++E  R F+  +  + +K+ + +      K      D        ++ V   FR+   F HG LAG  + + V   V+ G   S+  + L  Y  L  PF    Y+   +  +S +DR D              +P+   S        ALIL+    + ++ ++LY +  +N +  +  A    LV     W I++ V ++L+ +SW  ++  P  D
Sbjct:  170 VSQ-PVGKVFVEKSRRFQAADRSELIKTTENIDVSMDVKPSWTTRD-------VALSVHRAFRMVGLFSHGFLAGCAVWNTVVIYVLAGDQLSNVSNLLQQYKPLAYPFQSLLYLLLALSTVSAFDRTDFAKISVAIRNFLALEPTALAS---FLYFTALILSLSQQMTSDRIHLY-EPSVNGSLWAAEAEEPILV----PWIIVNLVVALLVGLSWLFLSYRPGMD 380          
BLAST of SMED30025195 vs. TrEMBL
Match: A0A267GG12 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig002657g1 PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.840e-21
Identity = 67/231 (29.00%), Postives = 119/231 (51.52%), Query Frame = 2
Query:  446 VRNFRVENHDKYLKSQQKLSEKQAEKLR----INENDYDNDLMQCSIGVTNRFRIFATFLHGILAGMTLMHLVFCLVVGGTTQSSQQSYLILYTTLQQPFSIFNYVAFVIILISLWDRVDVGQ----PSPNCSQPQIGVLVALILTFIAFIINNSLYLYNQDFINFNTNSTS----AYLSTLVTSFGTWKILDAVKSILLVISWFIVAMVPIFDRFIEQLNESINQELNEN 1102
             + F+ E  DKY   QQ+L +++ E+ +    + E D  N  ++C+IG T  +    T L G++ G  L+H V+      T  S+  S+L  Y+ L  P  I  YV   +IL+S+ DR D G+        C+  + G +V ++L   A++++N++Y  +Q    ++ N+T+    A   +LV S   W+I+D V++  L + W +VA  P F+R  + L   ++  + E 
Sbjct:  240 AKTFKAEKLDKY---QQRLEQERKEREQYLEGVVEEDTSNRTLKCAIGFTKVYNYLGTVLLGLMPGFALLHTVYVW----TLSSNYLSFLADYSRLGSPMPILYYVVLTLILLSVLDRYDTGKLDRGSCLECASFRHGGMV-VLLYIPAYVVSNAMYPTDQWMRGYSLNATAYAGIANGDSLVQS---WRIMDTVRAACLALGWLVVAFNPQFNRLADNLETELDDLIGEE 459          
BLAST of SMED30025195 vs. TrEMBL
Match: A0A1I8GPS1 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.161e-21
Identity = 67/231 (29.00%), Postives = 119/231 (51.52%), Query Frame = 2
Query:  446 VRNFRVENHDKYLKSQQKLSEKQAEKLR----INENDYDNDLMQCSIGVTNRFRIFATFLHGILAGMTLMHLVFCLVVGGTTQSSQQSYLILYTTLQQPFSIFNYVAFVIILISLWDRVDVGQ----PSPNCSQPQIGVLVALILTFIAFIINNSLYLYNQDFINFNTNSTS----AYLSTLVTSFGTWKILDAVKSILLVISWFIVAMVPIFDRFIEQLNESINQELNEN 1102
             + F+ E  DKY   QQ+L +++ E+ +    + E D  N  ++C+IG T  +    T L G++ G  L+H V+      T  S+  S+L  Y+ L  P  I  YV   +IL+S+ DR D G+        C+  + G +V ++L   A++++N++Y  +Q    ++ N+T+    A   +LV S   W+I+D V++  L + W +VA  P F+R  + L   ++  + E 
Sbjct:  240 AKTFKAEKLDKY---QQRLEQERKEREQYLEGVVEEDTSNRTLKCAIGFTKVYNYLGTVLLGLMPGFALLHTVYVW----TLSSNYLSFLADYSRLGSPMPILYYVVLTLILLSVLDRYDTGKLDRGSCLECASFRHGGMV-VLLYIPAYVVSNAMYPTDQWMRGYSLNATAYAGIANGDSLVQS---WRIMDTVRAACLALGWLVVAFNPQFNRLADNLETELDDLIGEE 459          
BLAST of SMED30025195 vs. TrEMBL
Match: A0A1I8I513 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.275e-19
Identity = 67/223 (30.04%), Postives = 116/223 (52.02%), Query Frame = 2
Query:  446 VRNFRVENHDKYLKSQQKLSEKQAEKLR----INENDYDNDLMQCSIGVTNRFRIFATFLHGILAGMTLMHLVFCLVVGGTTQSSQQSYLILYTTLQQPFSIFNYVAFVIILISLWDRVDVGQ----PSPNCSQPQIGVLVALILTFIAFIINNSLYLYNQDFINFNTNSTS----AYLSTLVTSFGTWKILDAVKSILLVISWFIVAMVPIFDRFIEQLNES 1078
             + F+ E  DKY   QQ+L +++ E+ +    + E D  N  ++C+IG T  +    T L G++ G  L+H V+      T  S+  S+L  Y+ L  P  I  YV   +IL+S+ DR D G+        C+  + G +V ++L   A++++N++Y  +Q    ++ N+T+    A   +LV S   W+I+D V++  L + W +VA  P F+R  + L  S
Sbjct: 1008 AKTFKAEKLDKY---QQRLEQERKEREQYLEGVVEEDTSNRTLKCAIGFTKVYNYLGTVLLGLMPGFALLHTVYVW----TLSSNYLSFLADYSRLGSPMPILYYVVLTLILLSVLDRYDTGKLDRGSCLECASFRHGGMV-VLLYIPAYVVSNAMYPTDQWMRGYSLNATAYAGIANGDSLVQS---WRIMDTVRAACLALGWLVVAFNPQFNRLADNLETS 1219          
BLAST of SMED30025195 vs. TrEMBL
Match: A0A1I8GZE5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.890e-19
Identity = 68/232 (29.31%), Postives = 119/232 (51.29%), Query Frame = 2
Query:  440 EGVRNFRVENHDKYLKSQQKLSEKQAEKLR----INENDYDNDLMQCSIGVTNRFRIFATFLHGILAGMTLMHLVFCLVVGGTTQSSQQSYLILYTTLQQPFSIFNYVAFVIILISLWDRVDVGQ----PSPNCSQPQIGVLVALILTFIAFIINNSLYLYNQDFINFNTNSTS----AYLSTLVTSFGTWKILDAVKSILLVISWFIVAMVPIFDRFIEQLNESINQELNE 1099
            +  + F+ E  DKY   QQ+L +++ E+ +    + E D  N  ++C+IG T  +    T L G++ G  L+H V+      T  S+  S+L  Y+ L  P  I  YV   +IL+S+ DR D G+        C+  + G +V L L   A++++N++Y  +Q    ++ N+T+    A   +LV S   W+I+D V++  L + W +VA  P F+R  + L   ++  + E
Sbjct: 1418 QDAKTFKAEKLDKY---QQRLEQERKEREQYLEGVVEEDTSNRTLKCAIGFTKVYNYLGTVLLGLMPGFALLHTVYVW----TLSSNYLSFLADYSRLGSPMPILYYVVLTLILLSVLDRYDTGKLDRGSCLECASFRHGGMVVL-LYIPAYVVSNAMYPTDQWMRGYSLNATAYAGIANGDSLVQS---WRIMDTVRAACLALGWLVVAFNPQFNRLADNLETELDDLIGE 1638          
BLAST of SMED30025195 vs. TrEMBL
Match: A0A183VY35 (Uncharacterized protein OS=Trichobilharzia regenti OX=157069 GN=TRE_LOCUS5391 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.231e-15
Identity = 80/286 (27.97%), Postives = 138/286 (48.25%), Query Frame = 2
Query:  287 NNGPLGVGAYLEDLQDDIEMKVNSDDLNNEILTISRGKPSVSQGPGDKVYIEGVRNFRVENHDKYLK----SQQKLS---EKQAEKLRINENDYDNDLMQCSIGVTNRFRIFATFLHGILAGMTLMHLVFCLVVGGTTQ---SSQQSYLIL--YTTLQQPFSIFNYVAFVIILISLWDRVDVGQPSPNCSQPQIGV---LVALILTFIAFIINNSLYLYNQ--DFINFNTNSTSAYL----STLVTSFGTWKILDAVKSILLVISWFIVAMV-PIFDRFIEQLNES 1078
            NNG   +G  L+ L DDI +    + +NN      R   +            G R   V N   Y K     QQK S    K  +K R+  N  +N  +   + +    ++ +  L G+LAG +L+H +F   +    Q   S+ Q YL+L  Y    +P SI  Y +  ++ + ++ + D+G+P+ NC Q  + +   L+A+I   + FIINNS+  ++      ++ +++   YL    S L +S   W ILDA ++ L++I+W  V +  P++DR ++ L+ S
Sbjct:   29 NNGD--IGPILDALGDDITIASEMETVNNR-----RNSQAT-----------GARKIPVINSHDYEKNISTKQQKESIAKLKSQDKQRL-INMSNNPGLYFVVKIHETLQMLSFTLFGVLAGASLVHTLFVQALANAIQIGSSTNQYYLLLRLYGAYARPVSITFYASLAVVGVFIFGKFDLGRPTINCIQKCVRLQNGLMAIIFYMLCFIINNSMSWFDNVLHTTSYKSDTQINYLLNTDSELNSSLKIWLILDAGRTALILITWISVGLGDPLYDRLVKTLSSS 295          
BLAST of SMED30025195 vs. Ensembl Cavefish
Match: tmem237b (transmembrane protein 237B [Source:NCBI gene;Acc:103023480])

HSP 1 Score: 56.225 bits (134), Expect = 1.031e-7
Identity = 67/266 (25.19%), Postives = 112/266 (42.11%), Query Frame = 2
Query:  323 DLQDDIEMKVNSDDLNNEILTISRGKPSVSQG-----------PGDKVYIEGVRNFR-VENHDKYLKSQQKLSEKQAEKLRINENDYDNDLMQCSIGVTNR----FRIFATFLHGILAGMTLMHLVFCLVVGGTTQSSQQSYLILYTTLQQPFSIFNYVAFVIILISLWDRVDVGQPSPNCSQ-----PQIGVLVALILTFIAFIINNSLYLYNQDFINF--NTNSTSAYLSTLVTSFGTWKILDAVKSILLVISWFIVAMVPIFD 1051
            D+Q + E+ V  DD+      I+  +P + Q            P  KV+IE  R F+  E  D    S Q             +N  D   M  +  V+ R    FR+   F HG LAG  + +++   ++ G   S+  + L  Y TL  P     Y    +  +S +DRV++ + S          P   V +A  L F A +++ S  +   D IN   N N++     +  +S   W I++ V ++L+ ++W +V+  P  D
Sbjct:  144 DMQLNNELAVEDDDI------ITDAQPPIPQHALFSAPHGQSQPVAKVFIERGRRFQPAERIDMRKTSDQP-----------EQNFMDLHSMWTTRDVSMRVHRGFRVIGLFSHGFLAGYAVWNIIVMYILAGEQMSTLPNLLQQYHTLAYPAQSLFYFLLALSTVSAFDRVNLAKASVALRSFLTLDP---VALASFLYFSALVLSLSQQM-TSDRINLYSNINASLWLPESEHSSLYPWIIVNLVVTLLVGLAWVLVSTSPDVD 388          
BLAST of SMED30025195 vs. Ensembl Medaka
Match: tmem237b (transmembrane protein 237B [Source:NCBI gene;Acc:101166111])

HSP 1 Score: 55.8398 bits (133), Expect = 1.471e-7
Identity = 61/253 (24.11%), Postives = 111/253 (43.87%), Query Frame = 2
Query:  323 DLQDDIEMKVNSDDLNNEILTISRGKPSVSQGPGD---KVYIEGVRNFRVENHDKYLKSQQKLSEKQAEKLRINENDYDNDLMQCSIGVTNRFRIFATFLHGILAGMTLMHLVFCLVVGGTTQSSQQSYLILYTTLQQPFSIFNYVAFVIILISLWDRVDVGQPSPNCSQ-----PQIGVLVALILTFIAFIINNSLYLYNQDFINF--NTNSTSAYLSTLVTSFGTWKILDAVKSILLVISWFIVAMVPIFD 1051
            DL DD++  +  DD+  +         S  QG      KV++E  R F+        KS Q++ +  A+   + +     D+   S+ V   FR+F  + HG LAG  + ++V   ++ G   ++  + L  Y +L  P     Y+   I  ++ +DRV++ + +    +     P   V +A  L F A +++ S  +   D IN   + N+T     +       W  ++ V ++L+ I+W  VA  P  D
Sbjct:  126 DLPDDLD--IQEDDVVTDYPIPQHALFSAPQGQSQAVAKVFVERNRRFQAAERADLRKSSQQM-DHTADFQHLQQPWTTRDV---SVRVHGGFRVFGLYCHGFLAGYAVWNVVVVYMLAGQHLTALANLLEQYHSLAYPSQSLLYMLLAISTVAAFDRVNLAKGTVALREFITLDP---VALASFLYFSALVLSLSQQM-TSDRINLYPSYNATLWPPGSEHQILHPWVTVNLVVALLVGIAWICVATRPEAD 368          
BLAST of SMED30025195 vs. Ensembl Medaka
Match: tmem237b (transmembrane protein 237B [Source:NCBI gene;Acc:101166111])

HSP 1 Score: 55.4546 bits (132), Expect = 1.755e-7
Identity = 61/253 (24.11%), Postives = 111/253 (43.87%), Query Frame = 2
Query:  323 DLQDDIEMKVNSDDLNNEILTISRGKPSVSQGPGD---KVYIEGVRNFRVENHDKYLKSQQKLSEKQAEKLRINENDYDNDLMQCSIGVTNRFRIFATFLHGILAGMTLMHLVFCLVVGGTTQSSQQSYLILYTTLQQPFSIFNYVAFVIILISLWDRVDVGQPSPNCSQ-----PQIGVLVALILTFIAFIINNSLYLYNQDFINF--NTNSTSAYLSTLVTSFGTWKILDAVKSILLVISWFIVAMVPIFD 1051
            DL DD++  +  DD+  +         S  QG      KV++E  R F+        KS Q++ +  A+   + +     D+   S+ V   FR+F  + HG LAG  + ++V   ++ G   ++  + L  Y +L  P     Y+   I  ++ +DRV++ + +    +     P   V +A  L F A +++ S  +   D IN   + N+T     +       W  ++ V ++L+ I+W  VA  P  D
Sbjct:  138 DLPDDLD--IQEDDVVTDYPIPQHALFSAPQGQSQAVAKVFVERNRRFQAAERADLRKSSQQM-DHTADFQHLQQPWTTRDV---SVRVHGGFRVFGLYCHGFLAGYAVWNVVVVYMLAGQHLTALANLLEQYHSLAYPSQSLLYMLLAISTVAAFDRVNLAKGTVALREFITLDP---VALASFLYFSALVLSLSQQM-TSDRINLYPSYNATLWPPGSEHQILHPWVTVNLVVALLVGIAWICVATRPEAD 380          
BLAST of SMED30025195 vs. Planmine SMEST
Match: SMESG000001693.1 (SMESG000001693.1)

HSP 1 Score: 159.458 bits (402), Expect = 3.885e-45
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 2
Query:   80 MSENVHDNPVYADENANNGXXXXXXXXXXXXXXXXXXXXXXXXXDNSNDVXXXXXXXXXXXXXQSEDVNNNGPLGVGAYLEDLQDDIEMKVNSDDLNNEILTISRGKPSVSQGPGDKVYIEG 445
            MSENVHDNPVYADENANNGVRKKRRRRPNPNETETTNTVPEPNNDNSNDVKREPRRRRRKERRQSEDVNNNGPLGVGAYLEDLQDDIEMKVNSDDLNNEILTISRGKPSVSQGPGDKVYIEG
Sbjct:    1 MSENVHDNPVYADENANNGVRKKRRRRPNPNETETTNTVPEPNNDNSNDVKREPRRRRRKERRQSEDVNNNGPLGVGAYLEDLQDDIEMKVNSDDLNNEILTISRGKPSVSQGPGDKVYIEG 122          
The following BLAST results are available for this feature:
BLAST of SMED30025195 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025195 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025195 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025195 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025195 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025195 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Tmem2375.533e-624.23transmembrane protein 237 [Source:MGI Symbol;Acc:M... [more]
Tmem2379.076e-624.23transmembrane protein 237 [Source:MGI Symbol;Acc:M... [more]
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BLAST of SMED30025195 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025195 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A267GG123.840e-2129.00Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8GPS14.161e-2129.00Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8I5131.275e-1930.04Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8GZE51.890e-1929.31Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A183VY353.231e-1527.97Uncharacterized protein OS=Trichobilharzia regenti... [more]
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BLAST of SMED30025195 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
tmem237b1.031e-725.19transmembrane protein 237B [Source:NCBI gene;Acc:1... [more]
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BLAST of SMED30025195 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025195 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025195 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30025195 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
tmem237b1.471e-724.11transmembrane protein 237B [Source:NCBI gene;Acc:1... [more]
tmem237b1.755e-724.11transmembrane protein 237B [Source:NCBI gene;Acc:1... [more]
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BLAST of SMED30025195 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000001693.13.885e-45100.00SMESG000001693.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30025195 ID=SMED30025195|Name=SMED30025195|organism=Schmidtea mediterranea sexual|type=transcript|length=3067bp
TGTTTAACTAAATCAATTATAAATAATTATGTTATGTGTTATTCAAACAC
CTTAGTTACGTAAATTTATTTTATTGAAAATGTCTGAAAATGTACATGAT
AATCCAGTATATGCTGATGAAAATGCTAATAATGGTGTGAGAAAAAAAAG
ACGCAGAAGACCAAATCCTAATGAAACTGAAACCACCAATACTGTACCAG
AGCCGAACAATGATAATTCCAACGATGTTAAACGTGAACCACGTCGAAGA
CGTCGTAAAGAACGCCGTCAATCGGAAGATGTGAATAACAACGGTCCACT
CGGAGTTGGAGCTTACTTAGAGGATCTACAAGATGATATCGAAATGAAAG
TCAATTCTGATGATTTAAACAATGAAATTTTGACGATATCCAGAGGAAAA
CCTTCTGTATCCCAAGGACCGGGAGATAAAGTCTACATAGAAGGAGTAAG
AAATTTCCGAGTGGAAAATCATGATAAATATTTGAAAAGTCAACAAAAAC
TATCAGAAAAACAAGCCGAAAAATTGAGAATAAATGAAAATGATTACGAT
AACGATTTAATGCAATGTTCAATCGGTGTTACTAATCGATTCAGAATATT
TGCCACATTTCTCCATGGAATACTGGCTGGAATGACACTGATGCACCTGG
TTTTCTGTCTAGTAGTCGGTGGTACTACCCAATCCTCCCAGCAATCCTAT
TTGATATTGTACACCACATTACAGCAGCCGTTCTCAATATTCAATTATGT
CGCCTTCGTTATCATCCTCATATCGCTATGGGATCGTGTCGATGTTGGCC
AGCCGTCACCGAATTGTTCCCAGCCTCAGATTGGAGTTTTGGTGGCATTA
ATTCTGACATTTATTGCTTTTATCATTAACAATAGTCTTTATCTTTACAA
TCAAGACTTCATAAACTTCAACACAAATAGTACCAGTGCGTATTTATCTA
CATTAGTGACTTCATTCGGAACTTGGAAGATTTTGGATGCTGTTAAAAGT
ATCCTTCTGGTTATCAGTTGGTTCATTGTGGCAATGGTTCCAATTTTTGA
TAGGTTTATTGAACAATTAAATGAAAGCATTAATCAAGAGCTAAATGAAA
ATTATTAATTCCTTCTCCTTTCTGGAAAATTATTTTATATTTTCAATTTA
TTGTAAATATTTTGATTATTGCCTTTATAACAAAATTGCAAATTTATTCA
GCATTATAACAAATTTATTTTAGTATTGGATTAAATTTTTCTTGAAAAAA
TAATTCTAATTTATAGAATATTTTGAATTTCTATTCTTTTTTCATTTCAG
ATTTTAGATCGATATTTTGTTTTTATGTATGTTTTTTGTTGAAACTATTG
ATTTTAGTATAATGAAGAAGTGCAAGTAATAGATCTGCTTGCATTTGGGT
GTTGTCGTGATGGATTTTAATATTTCTATGGAATGTTGATGTCCAAATGT
CAACCATAACGGTTGTCATTTCACCATTATGCAATTCGATGCGAGTTGAT
CGATGCACACAGTTGGTACTATATAATGTGCACTAAAGCACGTATGGAGG
TGATGGCATATAGCTGATACTCCACAATTTACTCCATCTTTCTAACTATC
TGTCTATAGATGGATTTTCTCTTTCGGGTCCGGTGTTTATAACCATTTTC
TTGAATATAATTGAGAAGTTAACATTTGTATATCGTCATGTACAAAACAC
CACTAATATAATACACTTCCCTAAACTATGAGTGAACAATAAAACGAACT
TAGACCTCATATATAACGCATTTAGTCCAATTCACTACACTATTTCATAG
TAATATAGGTAGAGAGACAGTGAACTATATCTATTAAAATGAATAAATCT
ATTTCGATTACAATGTAAGTTATGAAATAATTATAAACGAAAAAACGAAT
GTGAAAGTTAGCAAAATACACGATGCATATCTTAAATTAGCATTACAGTA
GAATCGCCATATATGGTACACCTTATACAAGGTACGGCACGATATAAGGT
ACAATTTATTAAAATATACTACAATAAGTTTATACTAAGTCAAAATTCTT
TATCTCTTAGTTCATTATATGTTACACTTGTATAAGGTACAGTTTTTTTA
ATATAAAAATGGTGTACTTTATAGAGAGATTCTACTGTACCTACAATGTA
ATAGTTATGTAGGTAATATTTATGTAGGTCTTACATAAATAAGTATTATA
TAATAGCAAAATTAATTTCATAAGTTGTGATATTACTGCAAACCGACACA
GTCAAATATATATTAGTATGTGCGTGTGATTATAAATCAAATAAAAACCT
CGAATGTAATATTTTAATGTCTCAACTTCTATATTGGTATCAGTTGCGAA
CGGTTCTCCTATATAATGACACGAACCAATTCGGTGTTTTGACTCAAAAC
CTTAGACTTGTTTTCGCTATTTTTTTATATAAACGCGATCTTCATCTTTA
AGCTTCTGTAGTCTTTTCTTGAAACGGTTGAACTTACCTCATACCAGTGG
AGTAATGAGATGCTTGGTCCCTGTAAGACTAAGTAAATCAGTATGGATAG
ATTTTGAGTGAAAGCCTTGTTAATATCACATGATAATATAGAATCTAATA
TTATTCTTTTTTTAATTTTGTAAAGAGCCTTCAAACACTGAGTATTTGAA
GTCAATATATATATTATTTCATAGTGTTTTGCATAATTTTAAAAATGAAT
AGATTTAGTTTTTAAATCAATACTAAGATCACTTATTTTAGTTAACTCTA
TATTAACTTCACTTTGTATATTTGATTGAGCCATGCAAATCTTGCAACGA
CAAATTATCCCACTTCCGGTGATCGAATCGAGCTGAAATTTAGCAGATAA
TTCTTTGAGAACTTTGTATTCTTTCAAAATTTCAGACCGATCGATGGTAT
TATAATTAACTTTTCAATTTGGTAACCTATGGAGAAATGTCTTAACTAGG
TTATTTTGCGTAGTATTAAATATTTCATAGCATTTAGCATGCATGCTGAA
ATTTTAATTTTCAGAGAATGTAAAAGAGTGTGATATAGAGAGATTTAAAA
ACTATGTTTTTACGATT
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protein sequence of SMED30025195-orf-1

>SMED30025195-orf-1 ID=SMED30025195-orf-1|Name=SMED30025195-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=343bp
MSENVHDNPVYADENANNGVRKKRRRRPNPNETETTNTVPEPNNDNSNDV
KREPRRRRRKERRQSEDVNNNGPLGVGAYLEDLQDDIEMKVNSDDLNNEI
LTISRGKPSVSQGPGDKVYIEGVRNFRVENHDKYLKSQQKLSEKQAEKLR
INENDYDNDLMQCSIGVTNRFRIFATFLHGILAGMTLMHLVFCLVVGGTT
QSSQQSYLILYTTLQQPFSIFNYVAFVIILISLWDRVDVGQPSPNCSQPQ
IGVLVALILTFIAFIINNSLYLYNQDFINFNTNSTSAYLSTLVTSFGTWK
ILDAVKSILLVISWFIVAMVPIFDRFIEQLNESINQELNENY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR029409TMEM237
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 335..342
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..67
NoneNo IPR availablePANTHERPTHR28388:SF1TRANSMEMBRANE PROTEIN 237coord: 16..341
NoneNo IPR availableTMHMMTMhelixcoord: 250..272
NoneNo IPR availableTMHMMTMhelixcoord: 301..323
NoneNo IPR availableTMHMMTMhelixcoord: 175..197
NoneNo IPR availableTMHMMTMhelixcoord: 218..235
IPR029409Transmembrane protein 237PFAMPF15383TMEM237coord: 104..324
e-value: 8.4E-35
score: 120.1
IPR029409Transmembrane protein 237PANTHERPTHR28388FAMILY NOT NAMEDcoord: 16..341