Actin

Overview


Name	Actin
Smed ID	SMED30025103
Length (bp)	339

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Anatomical Expression

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Expressed In	Reference Transcript	Published Transcript	Transcriptome	Publication
gut	SMED30025103	Contig6807	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
gut	SMED30025103	Contig6807	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30025103	Contig6807	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30025103	Contig6807	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012
central nervous system	SMED30025103	Contig6807	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
central nervous system	SMED30025103	Contig6807	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of Actin vs. Ensembl Human
Match: ACTG1 (actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144])

HSP 1 Score: 111.309 bits (277), Expect = 2.822e-31
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Human
Match: ACTG1 (actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144])

HSP 1 Score: 111.309 bits (277), Expect = 4.970e-31
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   73 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 181

[Close]

BLAST of Actin vs. Ensembl Human
Match: ACTB (actin beta [Source:HGNC Symbol;Acc:HGNC:132])

HSP 1 Score: 111.309 bits (277), Expect = 5.356e-30
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Celegans
Match: act-4 (Actin-4 [Source:UniProtKB/Swiss-Prot;Acc:P10986])

HSP 1 Score: 112.079 bits (279), Expect = 5.277e-31
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   39 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 147

[Close]

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   39 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 147

[Close]

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   39 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 147

[Close]

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   39 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 147

[Close]

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   39 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 147

[Close]

BLAST of Actin vs. Ensembl Fly
Match: Act87E (gene:FBgn0000046 transcript:FBtr0346242)

HSP 1 Score: 114.39 bits (285), Expect = 1.931e-31
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FNAP   +AIQ V SL ASGRT G+VL+S D V+ ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Ensembl Fly
Match: Act87E (gene:FBgn0000046 transcript:FBtr0082785)

HSP 1 Score: 114.39 bits (285), Expect = 1.931e-31
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FNAP   +AIQ V SL ASGRT G+VL+S D V+ ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Ensembl Fly
Match: Act87E (gene:FBgn0000046 transcript:FBtr0082786)

HSP 1 Score: 114.39 bits (285), Expect = 1.931e-31
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FNAP   +AIQ V SL ASGRT G+VL+S D V+ ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Ensembl Fly
Match: Act79B (gene:FBgn0000045 transcript:FBtr0334090)

HSP 1 Score: 113.62 bits (283), Expect = 3.615e-31
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN+P   +AIQ V SL ASGRT G+VL+S D V+ ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKVWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Ensembl Fly
Match: Act79B (gene:FBgn0000045 transcript:FBtr0078478)

HSP 1 Score: 113.62 bits (283), Expect = 3.615e-31
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN+P   +AIQ V SL ASGRT G+VL+S D V+ ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKVWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Ensembl Zebrafish
Match: actb1 (actin, beta 1 [Source:NCBI gene;Acc:57934])

HSP 1 Score: 111.309 bits (277), Expect = 2.521e-31
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Zebrafish
Match: actb1 (actin, beta 1 [Source:NCBI gene;Acc:57934])

HSP 1 Score: 111.309 bits (277), Expect = 1.306e-30
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Zebrafish
Match: actb2 (actin, beta 2 [Source:NCBI gene;Acc:57935])

HSP 1 Score: 111.309 bits (277), Expect = 3.372e-30
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Xenopus
Match: act3 (actin alpha 4 [Source:NCBI gene;Acc:394673])

HSP 1 Score: 112.079 bits (279), Expect = 2.075e-30
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E P L  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH ++ ++LA R   D+L+
Sbjct:   84 MEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIQRLDLAGRDLTDYLM 192

[Close]

BLAST of Actin vs. Ensembl Xenopus
Match: act3 (actin alpha 4 [Source:NCBI gene;Acc:394673])

HSP 1 Score: 111.694 bits (278), Expect = 3.727e-30
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E P L  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH ++ ++LA R   D+L+
Sbjct:   84 MEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIQRLDLAGRDLTDYLM 192

[Close]

BLAST of Actin vs. Ensembl Xenopus
Match: actb (actin, beta [Source:NCBI gene;Acc:407952])

HSP 1 Score: 111.694 bits (278), Expect = 4.513e-30
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Xenopus
Match: act3 (actin alpha 4 [Source:NCBI gene;Acc:394673])

HSP 1 Score: 111.694 bits (278), Expect = 4.527e-30
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E P L  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH ++ ++LA R   D+L+
Sbjct:   97 MEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIQRLDLAGRDLTDYLM 205

[Close]

BLAST of Actin vs. Ensembl Xenopus
Match: actg1 (actin gamma 1 [Source:NCBI gene;Acc:394957])

HSP 1 Score: 111.309 bits (277), Expect = 6.237e-30
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Mouse
Match: Actb (actin, beta [Source:MGI Symbol;Acc:MGI:87904])

HSP 1 Score: 111.309 bits (277), Expect = 5.497e-31
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Mouse
Match: Actg2 (actin, gamma 2, smooth muscle, enteric [Source:MGI Symbol;Acc:MGI:104589])

HSP 1 Score: 109.383 bits (272), Expect = 6.165e-31
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E P L  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Ensembl Mouse
Match: Acta2 (actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909])

HSP 1 Score: 109.768 bits (273), Expect = 7.891e-31
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E P L  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   84 MEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLM 192

[Close]

BLAST of Actin vs. Ensembl Mouse
Match: Actg2 (actin, gamma 2, smooth muscle, enteric [Source:MGI Symbol;Acc:MGI:104589])

HSP 1 Score: 109.768 bits (273), Expect = 9.245e-31
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E P L  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Ensembl Mouse
Match: Actg1 (actin, gamma, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:87906])

HSP 1 Score: 110.923 bits (276), Expect = 9.380e-31
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:  139 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 247

[Close]

BLAST of Actin vs. UniProt/SwissProt
Match: sp|Q9Y702|ACT1_SCHCO (Actin-1 OS=Schizophyllum commune OX=5334 GN=ACT1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.351e-30
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FNAP   +AIQ V SL ASGRT G+VL+S D V  ++ I+EG+ LPH +  ++LA R   DFL+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGFALPHAILRLDLAGRDLTDFLI 190

[Close]

BLAST of Actin vs. UniProt/SwissProt
Match: sp|P30170|ACT10_SOLTU (Actin-85C (Fragment) OS=Solanum tuberosum OX=4113 GN=AC85C PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.774e-30
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V+ ++ I+EGY LPH +  ++LA R   D L+
Sbjct:   64 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLM 172

[Close]

BLAST of Actin vs. UniProt/SwissProt
Match: sp|P10981|ACT5_DROME (Actin-87E OS=Drosophila melanogaster OX=7227 GN=Act87E PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.935e-30
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FNAP   +AIQ V SL ASGRT G+VL+S D V+ ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. UniProt/SwissProt
Match: sp|P93375|ACT7_TOBAC (Actin-104 (Fragment) OS=Nicotiana tabacum OX=4097 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.473e-30
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V+ ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   64 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRGLTDYLM 172

[Close]

BLAST of Actin vs. UniProt/SwissProt
Match: sp|P53463|ACTM_HELER (Actin, cytoskeletal OS=Heliocidaris erythrogramma OX=7634 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.002e-30
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FNAP   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. TrEMBL
Match: M1RFM0 (Actin (Fragment) OS=Auxenochlorella protothecoides OX=3075 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.665e-30
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V+ ++ I+EGY LPH ++ ++LA R   DF++
Sbjct:    7 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIQRLDLAGRDLTDFMM 115

[Close]

BLAST of Actin vs. TrEMBL
Match: A0A3M7QL19 (Actin-4-like protein (Fragment) OS=Brachionus plicatilis OX=10195 GN=BpHYR1_019327 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.812e-30
Identity = 56/109 (51.38%), Postives = 74/109 (67.89%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FNAP   +AIQ V SL ASGRT G+VL+S D V+ ++ I+EGY LPH +  I+LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIMRIDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. TrEMBL
Match: A0A1J3HF55 (Actin-85C (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR5411_c3_g1_i1_g.19478 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.052e-29
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V+ ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:    3 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIMRLDLAGRDLTDYLM 111

[Close]

BLAST of Actin vs. TrEMBL
Match: A0A2D1QAD0 (Beta-actin (Fragment) OS=Bradysia impatiens OX=335710 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.224e-29
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFL 318
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN+P   +AIQ V SL ASGRT G+VL+S D V+ ++ I+EGY LPH +  ++LA R   D+L
Sbjct:    8 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 115

[Close]

BLAST of Actin vs. TrEMBL
Match: C6EQB5 (Actin (Fragment) OS=Modiolus modiolus OX=40256 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.485e-29
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAP--MIAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FNAP   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   21 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 129

[Close]

BLAST of Actin vs. Ensembl Cavefish
Match: actb2 (actin beta [Source:NCBI gene;Acc:103030443])

HSP 1 Score: 111.309 bits (277), Expect = 2.858e-30
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Cavefish
Match: actb1 (actin, cytoplasmic 1 [Source:NCBI gene;Acc:103039558])

HSP 1 Score: 111.309 bits (277), Expect = 3.484e-30
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Cavefish
Match: actb1 (actin, cytoplasmic 1 [Source:NCBI gene;Acc:103039558])

HSP 1 Score: 111.309 bits (277), Expect = 3.812e-30
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 192

[Close]

BLAST of Actin vs. Ensembl Cavefish
Match: zgc:86709 (actin, alpha cardiac muscle 1 [Source:NCBI gene;Acc:103031734])

HSP 1 Score: 110.923 bits (276), Expect = 5.434e-30
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E P L  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   84 MEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLM 192

[Close]

BLAST of Actin vs. Ensembl Cavefish
Match: ENSAMXT00000038841.1 (actin, alpha cardiac [Source:NCBI gene;Acc:111196450])

HSP 1 Score: 110.538 bits (275), Expect = 5.665e-30
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E P L  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   84 MEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLM 192

[Close]

BLAST of Actin vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011113.1 (pep scaffold:Pmarinus_7.0:GL498954:115:1245:1 gene:ENSPMAG00000010086.1 transcript:ENSPMAT00000011113.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 111.694 bits (278), Expect = 5.026e-31
Identity = 53/109 (48.62%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V+ ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004586.1 (pep scaffold:Pmarinus_7.0:GL479516:23873:27955:-1 gene:ENSPMAG00000004161.1 transcript:ENSPMAT00000004586.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 111.309 bits (277), Expect = 7.317e-31
Identity = 53/109 (48.62%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V+ ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011230.1 (pep scaffold:Pmarinus_7.0:GL476986:121012:122166:1 gene:ENSPMAG00000010203.1 transcript:ENSPMAT00000011230.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 70.8626 bits (172), Expect = 4.548e-16
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFL 318
            MER W H    ++   P + PVL  E PL+   NR    Q++ E F AP   IA+Q V SL ASG   G+ +   D V  ++ +FEGY LP  +   ++A R   D L
Sbjct:   93 MERVWAHAYEAELHARPQDQPVLLTEAPLNPLENREQAAQLLFERFGAPAVHIAVQAVLSLYASGMVTGLAVGVGDGVTHAVPVFEGYGLPRAVLRSDVAGRDVTDNL 200

[Close]

BLAST of Actin vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008200.1 (pep scaffold:Pmarinus_7.0:GL477804:3783:17322:1 gene:ENSPMAG00000007412.1 transcript:ENSPMAT00000008200.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 61.2326 bits (147), Expect = 8.821e-13
Identity = 38/120 (31.67%), Postives = 64/120 (53.33%), Query Frame = 1

Query:    7 RTWHHMLH--------NKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEI--FNAPMIAIQEVFSLCA-SGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLVLTIY 333
            R W  M H        +K+ +   E  +L  E P++   NR  +I++M E   F+A  IAIQ V +L A +G   G+V++S D V     ++EG+ LPH+ R +++A R    +L+  ++
Sbjct:   64 RNWDDMKHLWDYTFGPDKLNVNTRECKILLTEPPMNPMKNREKIIEVMFEQYGFSAVYIAIQAVLTLYAQAGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKVLW 183

[Close]

BLAST of Actin vs. Ensembl Yeast
Match: ACT1 (Actin; structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions [Source:SGD;Acc:S000001855])

HSP 1 Score: 102.449 bits (254), Expect = 1.005e-27
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E P++ K+NR  + QIM E FN P   ++IQ V SL +SGRT G+VL+S D V   + I+ G+ LPH +  I+LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Yeast
Match: ARP1 (Actin-related protein of the dynactin complex; required for spindle orientation and nuclear migration; forms actin-like short filament composed of 9 or 10 Arp1p monomers; putative ortholog of mammalian centractin [Source:SGD;Acc:S000001171])

HSP 1 Score: 53.9138 bits (128), Expect = 2.727e-10
Identity = 29/101 (28.71%), Postives = 55/101 (54.46%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPV-ELPVLHAETPLSSKANRGSLIQIMLEIFNAPMIAIQE--VFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLA 294
            ME  W ++L+  + +  + E P+L  E P++   NR  + Q++ E F+   + +    V SL ASGRT G V++  +    ++ I++G+ LP  M  +++ 
Sbjct:   89 MELIWSYVLNEVLQLQNIGEHPLLITEAPMNPLKNREQMAQVLFETFDVSALYVSNPAVLSLYASGRTTGCVVDCGEGYCSTVPIYDGFALPASMMRMDIG 189

[Close]

BLAST of Actin vs. Ensembl Nematostella
Match: EDO37976 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SEA7])

HSP 1 Score: 112.079 bits (279), Expect = 5.959e-31
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN+P   +AIQ V SL ASGRT G+V++S D V+ ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Ensembl Nematostella
Match: EDO38520 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SCN8])

HSP 1 Score: 111.694 bits (278), Expect = 8.065e-31
Identity = 53/109 (48.62%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN+P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Ensembl Nematostella
Match: EDO45013 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RU31])

HSP 1 Score: 111.309 bits (277), Expect = 1.170e-30
Identity = 53/109 (48.62%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN+P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Nematostella
Match: EDO42646 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S0V7])

HSP 1 Score: 111.309 bits (277), Expect = 1.207e-30
Identity = 53/109 (48.62%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN+P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Nematostella
Match: EDO38006 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SEB1])

HSP 1 Score: 110.923 bits (276), Expect = 1.488e-30
Identity = 53/109 (48.62%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN+P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Medaka
Match: actb (cytoplasmic actin OlCA1 [Source:NCBI gene;Acc:100049433])

HSP 1 Score: 112.849 bits (281), Expect = 9.101e-31
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ I P E PVL  E PL+ KANR  + QIM E FN+P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Medaka
Match: actb (cytoplasmic actin OlCA1 [Source:NCBI gene;Acc:100049433])

HSP 1 Score: 112.464 bits (280), Expect = 1.130e-30
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ I P E PVL  E PL+ KANR  + QIM E FN+P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   84 MEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 192

[Close]

BLAST of Actin vs. Ensembl Medaka
Match: actb (cytoplasmic actin OlCA1 [Source:NCBI gene;Acc:100049433])

HSP 1 Score: 112.464 bits (280), Expect = 1.450e-30
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ I P E PVL  E PL+ KANR  + QIM E FN+P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Medaka
Match: ENSORLT00000021726.2 (actin, cytoplasmic [Source:NCBI gene;Acc:101155523])

HSP 1 Score: 112.079 bits (279), Expect = 1.600e-30
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN+P   +AIQ V SL ASGRT G+V++S D V+ ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Ensembl Medaka
Match: ENSORLT00000029375.1 (actin, cytoplasmic 2 [Source:NCBI gene;Acc:101168921])

HSP 1 Score: 111.309 bits (277), Expect = 3.686e-30
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FN P   +AIQ V SL ASGRT G+V++S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   82 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 190

[Close]

BLAST of Actin vs. Planmine SMEST
Match: SMESG000051672.1 (SMESG000051672.1)

HSP 1 Score: 114.005 bits (284), Expect = 2.719e-31
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FNAP   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Planmine SMEST
Match: SMESG000051670.1 (SMESG000051670.1)

HSP 1 Score: 114.005 bits (284), Expect = 2.719e-31
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FNAP   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Planmine SMEST
Match: SMESG000066020.1 (SMESG000066020.1)

HSP 1 Score: 113.62 bits (283), Expect = 3.019e-31
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FNAP   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Planmine SMEST
Match: SMESG000058003.1 (SMESG000058003.1)

HSP 1 Score: 113.62 bits (283), Expect = 3.180e-31
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FNAP   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

[Close]

BLAST of Actin vs. Planmine SMEST
Match: SMESG000057992.1 (SMESG000057992.1)

HSP 1 Score: 113.62 bits (283), Expect = 3.180e-31
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM--IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAERASIDFLV 321
            ME+ WHH  +N++ + P E PVL  E PL+ KANR  + QIM E FNAP   +AIQ V SL ASGRT G+VL+S D V  ++ I+EGY LPH +  ++LA R   D+L+
Sbjct:   83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLM 191

The following BLAST results are available for this feature:

BLAST of Actin vs. Ensembl Human
BLAST of Actin vs. Ensembl Celegans
BLAST of Actin vs. Ensembl Fly
BLAST of Actin vs. Ensembl Zebrafish
BLAST of Actin vs. Ensembl Xenopus
BLAST of Actin vs. Ensembl Mouse
BLAST of Actin vs. UniProt/SwissProt
BLAST of Actin vs. TrEMBL
BLAST of Actin vs. Ensembl Cavefish
BLAST of Actin vs. Ensembl Sea Lamprey
BLAST of Actin vs. Ensembl Yeast
BLAST of Actin vs. Ensembl Nematostella
BLAST of Actin vs. Ensembl Medaka
BLAST of Actin vs. Planmine SMEST

BLAST of Actin vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ACTG1	2.822e-31	48.62	actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]	[more]
ACTG1	2.822e-31	48.62	actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]	[more]
ACTG1	4.970e-31	48.62	actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]	[more]
ACTB	5.356e-30	48.62	actin beta [Source:HGNC Symbol;Acc:HGNC:132]	[more]
ACTB	5.356e-30	48.62	actin beta [Source:HGNC Symbol;Acc:HGNC:132]	[more]

BLAST of Actin vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
act-4	5.277e-31	49.54	Actin-4 [Source:UniProtKB/Swiss-Prot;Acc:P10986]	[more]
act-4	5.277e-31	49.54	Actin-4 [Source:UniProtKB/Swiss-Prot;Acc:P10986]	[more]
act-4	5.277e-31	49.54	Actin-4 [Source:UniProtKB/Swiss-Prot;Acc:P10986]	[more]
act-4	5.277e-31	49.54	Actin-4 [Source:UniProtKB/Swiss-Prot;Acc:P10986]	[more]
act-4	5.277e-31	49.54	Actin-4 [Source:UniProtKB/Swiss-Prot;Acc:P10986]	[more]

BLAST of Actin vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Act87E	1.931e-31	50.46	gene:FBgn0000046 transcript:FBtr0346242	[more]
Act87E	1.931e-31	50.46	gene:FBgn0000046 transcript:FBtr0082785	[more]
Act87E	1.931e-31	50.46	gene:FBgn0000046 transcript:FBtr0082786	[more]
Act79B	3.615e-31	49.54	gene:FBgn0000045 transcript:FBtr0334090	[more]
Act79B	3.615e-31	49.54	gene:FBgn0000045 transcript:FBtr0078478	[more]

BLAST of Actin vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
actb1	2.521e-31	48.62	actin, beta 1 [Source:NCBI gene;Acc:57934]	[more]
actb1	1.306e-30	48.62	actin, beta 1 [Source:NCBI gene;Acc:57934]	[more]
actb2	3.372e-30	48.62	actin, beta 2 [Source:NCBI gene;Acc:57935]	[more]
actb2	3.372e-30	48.62	actin, beta 2 [Source:NCBI gene;Acc:57935]	[more]
actb2	3.372e-30	48.62	actin, beta 2 [Source:NCBI gene;Acc:57935]	[more]

BLAST of Actin vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
act3	2.075e-30	48.62	actin alpha 4 [Source:NCBI gene;Acc:394673]	[more]
act3	3.727e-30	48.62	actin alpha 4 [Source:NCBI gene;Acc:394673]	[more]
actb	4.513e-30	48.62	actin, beta [Source:NCBI gene;Acc:407952]	[more]
act3	4.527e-30	48.62	actin alpha 4 [Source:NCBI gene;Acc:394673]	[more]
actg1	6.237e-30	48.62	actin gamma 1 [Source:NCBI gene;Acc:394957]	[more]

BLAST of Actin vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Actb	5.497e-31	48.62	actin, beta [Source:MGI Symbol;Acc:MGI:87904]	[more]
Actg2	6.165e-31	48.62	actin, gamma 2, smooth muscle, enteric [Source:MGI...	[more]
Acta2	7.891e-31	48.62	actin, alpha 2, smooth muscle, aorta [Source:MGI S...	[more]
Actg2	9.245e-31	48.62	actin, gamma 2, smooth muscle, enteric [Source:MGI...	[more]
Actg1	9.380e-31	48.62	actin, gamma, cytoplasmic 1 [Source:MGI Symbol;Acc...	[more]

BLAST of Actin vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q9Y702\|ACT1_SCHCO	1.351e-30	50.46	Actin-1 OS=Schizophyllum commune OX=5334 GN=ACT1 P...	[more]
sp\|P30170\|ACT10_SOLTU	1.774e-30	49.54	Actin-85C (Fragment) OS=Solanum tuberosum OX=4113 ...	[more]
sp\|P10981\|ACT5_DROME	1.935e-30	50.46	Actin-87E OS=Drosophila melanogaster OX=7227 GN=Ac...	[more]
sp\|P93375\|ACT7_TOBAC	2.473e-30	49.54	Actin-104 (Fragment) OS=Nicotiana tabacum OX=4097 ...	[more]
sp\|P53463\|ACTM_HELER	3.002e-30	50.46	Actin, cytoskeletal OS=Heliocidaris erythrogramma ...	[more]

BLAST of Actin vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
M1RFM0	5.665e-30	49.54	Actin (Fragment) OS=Auxenochlorella protothecoides...	[more]
A0A3M7QL19	8.812e-30	51.38	Actin-4-like protein (Fragment) OS=Brachionus plic...	[more]
A0A1J3HF55	1.052e-29	49.54	Actin-85C (Fragment) OS=Noccaea caerulescens OX=10...	[more]
A0A2D1QAD0	1.224e-29	50.00	Beta-actin (Fragment) OS=Bradysia impatiens OX=335...	[more]
C6EQB5	1.485e-29	50.46	Actin (Fragment) OS=Modiolus modiolus OX=40256 PE=...	[more]

BLAST of Actin vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
actb2	2.858e-30	48.62	actin beta [Source:NCBI gene;Acc:103030443]	[more]
actb1	3.484e-30	48.62	actin, cytoplasmic 1 [Source:NCBI gene;Acc:1030395...	[more]
actb1	3.812e-30	48.62	actin, cytoplasmic 1 [Source:NCBI gene;Acc:1030395...	[more]
zgc:86709	5.434e-30	48.62	actin, alpha cardiac muscle 1 [Source:NCBI gene;Ac...	[more]
ENSAMXT00000038841.1	5.665e-30	48.62	actin, alpha cardiac [Source:NCBI gene;Acc:1111964...	[more]

BLAST of Actin vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 4


Match Name	E-value	Identity	Description
ENSPMAT00000011113.1	5.026e-31	48.62	pep scaffold:Pmarinus_7.0:GL498954:115:1245:1 gene...	[more]
ENSPMAT00000004586.1	7.317e-31	48.62	pep scaffold:Pmarinus_7.0:GL479516:23873:27955:-1 ...	[more]
ENSPMAT00000011230.1	4.548e-16	37.96	pep scaffold:Pmarinus_7.0:GL476986:121012:122166:1...	[more]
ENSPMAT00000008200.1	8.821e-13	31.67	pep scaffold:Pmarinus_7.0:GL477804:3783:17322:1 ge...	[more]

BLAST of Actin vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
ACT1	1.005e-27	44.95	Actin; structural protein involved in cell polariz...	[more]
ARP1	2.727e-10	28.71	Actin-related protein of the dynactin complex; req...	[more]

BLAST of Actin vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO37976	5.959e-31	48.62	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38520	8.065e-31	48.62	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO45013	1.170e-30	48.62	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42646	1.207e-30	48.62	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38006	1.488e-30	48.62	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Actin vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
actb	9.101e-31	49.54	cytoplasmic actin OlCA1 [Source:NCBI gene;Acc:1000...	[more]
actb	1.130e-30	49.54	cytoplasmic actin OlCA1 [Source:NCBI gene;Acc:1000...	[more]
actb	1.450e-30	49.54	cytoplasmic actin OlCA1 [Source:NCBI gene;Acc:1000...	[more]
ENSORLT00000021726.2	1.600e-30	48.62	actin, cytoplasmic [Source:NCBI gene;Acc:101155523...	[more]
ENSORLT00000029375.1	3.686e-30	48.62	actin, cytoplasmic 2 [Source:NCBI gene;Acc:1011689...	[more]

BLAST of Actin vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000051672.1	2.719e-31	50.46	SMESG000051672.1	[more]
SMESG000051670.1	2.719e-31	50.46	SMESG000051670.1	[more]
SMESG000066020.1	3.019e-31	50.46	SMESG000066020.1	[more]
SMESG000058003.1	3.180e-31	50.46	SMESG000058003.1	[more]
SMESG000057992.1	3.180e-31	50.46	SMESG000057992.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30025103 ID=SMED30025103|Name=Actin|organism=Schmidtea mediterranea sexual|type=transcript|length=339bp
ATGGAAAGGACATGGCATCATATGCTACACAACAAAATGGTAATTGTGCC
AGTAGAACTTCCAGTTCTTCATGCTGAAACGCCGCTGAGTTCCAAAGCTA
ATAGAGGATCCCTGATTCAAATTATGTTGGAGATATTTAATGCACCAATG
ATTGCTATTCAAGAAGTTTTCTCTTTGTGCGCTTCAGGTCGTACCTTGGG
TATGGTTCTGAACTCTATTGATCCTGTAGCTCGCTCTTTGACAATTTTTG
AAGGTTATCTGTTACCTCATGTTATGCGTGAGATCAATTTGGCTGAAAGA
GCTTCAATAGACTTCTTGGTATTGACAATTTACCAATAA

protein sequence of SMED30025103-orf-1

>SMED30025103-orf-1 ID=SMED30025103-orf-1|Name=SMED30025103-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=113bp
MERTWHHMLHNKMVIVPVELPVLHAETPLSSKANRGSLIQIMLEIFNAPM
IAIQEVFSLCASGRTLGMVLNSIDPVARSLTIFEGYLLPHVMREINLAER
ASIDFLVLTIYQ*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0000070	intestinal phagocyte
PLANA:0000103	central nervous system

Vocabulary: **INTERPRO**
Term	Definition
IPR043129	ATPase_NBD
IPR004000	Actin

Vocabulary: **molecular function**
Term	Definition
GO:0000166	nucleotide binding
GO:0005524	ATP binding

Vocabulary: **cellular component**
Term	Definition
GO:0005737	cytoplasm
GO:0005856	cytoskeleton

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004000	Actin family	PRINTS	PR00190	ACTIN	coord: 3..21 score: 36.09 coord: 57..76 score: 61.86
IPR004000	Actin family	PFAM	PF00022	Actin	coord: 1..99 e-value: 3.9E-13 score: 48.8
IPR004000	Actin family	PANTHER	PTHR11937	ACTIN	coord: 1..107
None	No IPR available	GENE3D	G3DSA:3.30.420.40		coord: 55..103 e-value: 1.1E-22 score: 82.2
None	No IPR available	GENE3D	G3DSA:3.30.420.40		coord: 1..54 e-value: 1.1E-22 score: 82.2
None	No IPR available	PANTHER	PTHR11937:SF401		coord: 1..107
IPR043129	ATPase, nucleotide binding domain	SUPERFAMILY	SSF53067	Actin-like ATPase domain	coord: 1..70

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Actin

Zeng et. al., 2018

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Owlery

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