SMED30025065
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30025065 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 33Note: Hover over icons to view figure legend
Alignments
SMED30025065 aligns in the following genomic locations:
Homology
BLAST of SMED30025065 vs. Planmine SMEST
Match: SMESG000036060.1 (SMESG000036060.1) HSP 1 Score: 377.867 bits (969), Expect = 2.972e-124 Identity = 228/352 (64.77%), Postives = 252/352 (71.59%), Query Frame = 2 Query: 137 MSFGRASRQVTSSSNILLSKNQFPLTQNKQNXXXXXXXAHNKNRRQISASNSKTTVPSFSSINSPNEINVWNSHKHSTNHFTDLNGKPITYDHNQHTHSPRQYTXXXXXXXXXXXXXXXXGRNAKLKSNADRDKYSDGGGRSRQNSRFHGDNYFSTNSADIYGTMPKWNDDYQSRNRDLHSELDRHERWIERFGEEIEDLRIRSNKSERKYGRLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQS 1192 MSFGRASRQVTSSSNIL KNQFPLTQ KQNS SRSSSAHNKNRRQISASNSKT FSSINSPNE NVWNSHKHSTNHFTDLNGKPI Y NQHTHSPRQYTSLSEASRISHHSSSSSG+NAKLKSNADR+KYS+GG SRQNSRFHGDNYF+TNSADIYGTMPKWNDDYQSRNRD HSELDRHER IE FGEEIEDLRIRSNKSERK GR Q++ DDCK KL SQ RN QLE+ N +I + EN S +L+++ CK LQNE + Q+ +I +L+ +K+ LQ +D+CK++ N S Sbjct: 1 MSFGRASRQVTSSSNILPRKNQFPLTQYKQNSLSRSSSAHNKNRRQISASNSKTIDLGFSSINSPNENNVWNSHKHSTNHFTDLNGKPIAYYQNQHTHSPRQYTSLSEASRISHHSSSSSGKNAKLKSNADRNKYSEGGAGSRQNSRFHGDNYFATNSADIYGTMPKWNDDYQSRNRDWHSELDRHERGIEIFGEEIEDLRIRSNKSERKNGRSQEELDDCKAKLKLSQERNLQLENEN----EIFILEMENSKNSNEKLRSE---------------------------------------CKILQNETN----QYLTRINQLQSALKESKGINLRLQQDFDDCKVKLNHS 305 HSP 2 Score: 327.791 bits (839), Expect = 5.380e-105 Identity = 183/200 (91.50%), Postives = 191/200 (95.50%), Query Frame = 2 Query: 773 RLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHEEQILQWQTEMKNLTTKYVKLQSERDNLKLLVKEIDKENKILQNNYNKSDKENENLKF 1372 RLQQDFDDCKVKLNHSQRRNSQLE+AN ++ QI NQC NCAESTRQLQNQKSKVKKKIEELAK +QLKMENSKSSIEKLK ELN+SVNKCKSLQNENDSNKSQFSGQIGKLELIIK+INEERQILQNKYDECKLRFNQSNHEEQILQWQTEMKNLTTKYV LQS+RDNLKLLVKEID +NKILQNNYNKSDKENENLKF Sbjct: 290 RLQQDFDDCKVKLNHSQRRNSQLETANQYEHQINRNQCANCAESTRQLQNQKSKVKKKIEELAKYYQLKMENSKSSIEKLKPELNQSVNKCKSLQNENDSNKSQFSGQIGKLELIIKEINEERQILQNKYDECKLRFNQSNHEEQILQWQTEMKNLTTKYVILQSDRDNLKLLVKEIDDKNKILQNNYNKSDKENENLKF 489 HSP 3 Score: 88.9669 bits (219), Expect = 1.305e-18 Identity = 72/153 (47.06%), Postives = 107/153 (69.93%), Query Frame = 2 Query: 773 RLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHEEQILQWQTEM 1231 RLQQ+FD K HS+R NSQLESAN FKSQ+ ++ EN +E +QL+N+K K+K+EE+ KDFQLK ENS SIEKLK +L++S NK +SLQN+N++ KS F+ QI +L+ +K+ + + LQ +++CK + S +++ +Q + EM Sbjct: 510 RLQQEFD---AKSKHSER-NSQLESANLFKSQMDRSRFENNSELIKQLENEKETDKRKVEEITKDFQLKRENSNRSIEKLKLQLSQSENKFQSLQNDNNNIKSGFAAQIEQLQSALKESDRKMGSLQRDFEDCKEKLKHS--QKRNIQLENEM 656
BLAST of SMED30025065 vs. Planmine SMEST
Match: SMESG000038532.1 (SMESG000038532.1) HSP 1 Score: 382.874 bits (982), Expect = 9.301e-122 Identity = 263/442 (59.50%), Postives = 294/442 (66.52%), Query Frame = 2 Query: 137 MSFGRASRQVTSSSNILLSKNQFPLTQNKQNXXXXXXXAHNKNRRQISASNSKTTVPSFSSINSPNEINVWNSHKHSTNHFTDLNGKPITYDHNQHTHSPRQYTXXXXXXXXXXXXXXXXGRNAKLKSNADRDKYSDGGGRSRQNSRFHGDNYFSTNSADIYGTMPKWNDDYQSRNRDLHSELDRHERWIERFGEEIEDLRIRSNKSERKYGRLQQDFDDCKVKLNHSQRRNSQLESAN---YFKSQIGTNQCENCAESTRQLQNQ-----------KSKVKK-------------------------------KIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHEEQILQWQTEMKNLTTKYVKLQSERDNLKLLVKEIDKENKILQ 1327 MSFGRASRQVTSSSNIL SKNQFPLTQ KQNS SRSSSAHNKNRRQISASNSKT VPSFSSINSPNEINVWNSHKHSTNHFTDLN Y Q H+ + + + G N ++ G RSRQNSR H DNYFSTNSADIYGTMPKWNDDYQSRNRD HSELDRHER IERFGEEIEDLRIRSNKSERK GRLQ++ DDCK KL SQ RNSQLE+ N + + N E + LQN+ +S +K+ KIEELAK +QLKMENSKSSIEKLKSELNKSVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQ+ Y N+S E + L++Q + KY+ +E + L+ ++KE D+ N+ LQ Sbjct: 1 MSFGRASRQVTSSSNILPSKNQFPLTQYKQNSLSRSSSAHNKNRRQISASNSKTIVPSFSSINSPNEINVWNSHKHSTNHFTDLNDNIHLY---QKLHAFL-IIPAHQVEEMQSLNPMLIGINILIE-----------GARSRQNSRSHRDNYFSTNSADIYGTMPKWNDDYQSRNRDWHSELDRHERGIERFGEEIEDLRIRSNKSERKNGRLQEELDDCKAKLKLSQERNSQLENENEIFILEMENSNNSNEKLRSECKILQNETNQYLAQINQLQSALKESKGINGRLQQDFDDCKNRQDNCKIKNRKLKKKIEELAKYYQLKMENSKSSIEKLKSELNKSVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQSNY-------NKSGEENENLKFQHD------KYL---AEINKLESMLKESDRTNRRLQ 411 HSP 2 Score: 255.373 bits (651), Expect = 5.241e-75 Identity = 158/222 (71.17%), Postives = 179/222 (80.63%), Query Frame = 2 Query: 707 ERFGEEIEDLRIRSNKSERKYGRLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHEEQILQWQTEMKNLTTKYVKLQSERDNLKLLVKEIDKENKILQNNYNKSDKENENLKF 1372 +++ EI L +S+R RLQQ+ D K HS NSQLES N ++ QI NQC NC E +QLQN+ +VK KIEE+ KDFQLKME+S S+IEKLKSELN+SVNKCKSLQNEND++KS+F Q K E IIK+INEERQILQNKYDECKLRFNQSNHE+QILQWQTEMKNLTTKYVKLQSERDNLKLLVKEIDKENKILQNNYNKS +ENENLKF Sbjct: 387 DKYLAEINKLESMLKESDRTNRRLQQEID---AKSKHSDW-NSQLESTNQYEHQINRNQCTNCEELIKQLQNENERVKSKIEEITKDFQLKMEDSNSTIEKLKSELNQSVNKCKSLQNENDNDKSKFLEQNRKFESIIKEINEERQILQNKYDECKLRFNQSNHEKQILQWQTEMKNLTTKYVKLQSERDNLKLLVKEIDKENKILQNNYNKSGEENENLKF 604 HSP 3 Score: 93.2041 bits (230), Expect = 8.359e-20 Identity = 76/156 (48.72%), Postives = 99/156 (63.46%), Query Frame = 2 Query: 707 ERFGEEIEDLRIRSNKSERKYGRLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECK 1174 +++ EI L +S+R RLQQ+FD K HS+R NSQLESAN FKSQ+ N+ EN AE +QL+N+K KKK+EE+ KDFQLKMENS SIEKLK +C++LQN ND +LE IK+I++ +QILQ KYD+ K Sbjct: 607 DKYLAEINKLESVLKESDRTNSRLQQEFD---AKSKHSER-NSQLESANLFKSQMDRNRFENNAELIKQLENEKEIDKKKVEEITKDFQLKMENSNRSIEKLKL-------ECRNLQNAND-----------QLESTIKEIDKGKQILQKKYDDVK 740 HSP 4 Score: 86.2705 bits (212), Expect = 1.270e-17 Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 3 Query: 432 LQDNIHLYQKLHAFLIIPAHQVEEMQSLNPMLIGINILMEG 554 L DNIHLYQKLHAFLIIPAHQVEEMQSLNPMLIGINIL+EG Sbjct: 84 LNDNIHLYQKLHAFLIIPAHQVEEMQSLNPMLIGINILIEG 124
BLAST of SMED30025065 vs. Planmine SMEST
Match: SMESG000036102.1 (SMESG000036102.1) HSP 1 Score: 378.637 bits (971), Expect = 3.640e-121 Identity = 252/478 (52.72%), Postives = 295/478 (61.72%), Query Frame = 2 Query: 137 MSFGRASRQVTSSSNILLSKNQFPLTQNKQNXXXXXXXAHNKNRRQISASNSKTTVPSFSSINSPNEINVWNSHKHSTNHFTDLNGKPITYDHNQHTHSPRQYTXXXXXXXXXXXXXXXXGRNAKLKSNADRDKYSDGGGRSRQNSRFHGDNYFSTNSADIYGTMPKWNDDYQSRNRDLHSELDRHERWIERFGEEIEDLRIRSNKSERKYGRLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQS-----------NHEEQI--------------LQ----------------WQTEMKNLTTKYVKLQSERDN-------------------------LKLLVKEIDKENKILQNNYNKSDKENENLKF 1372 MSFG+ASRQ+T NIL +KN FPLTQ KQNSSSRSSSAHNKN RQISASNSKT FSSINSPNEINVWNSHK+STNHFTDLN KPI Y NQHTHSPRQY+ + EA+RISHHS+SSSGRNAKLKSNADRDKYSDGG RSRQNSRFHGDNYFSTNSADIYGTMP+WN+DYQSRN D HSELDRHER IE FGEEIEDLRIRSNKSERK GRLQ++ DD K KL SQ RN QLE+ N +I + EN S +L+++ CK LQNE + Q+ QI +L+ +K+ LQ +D+CK++ N S +E QI LQ +Q +M+N + KL+SE + L+L++KEI++E +ILQNNYNKS +ENENLKF Sbjct: 1 MSFGKASRQLT---NILPNKNSFPLTQYKQNSSSRSSSAHNKNLRQISASNSKTIDLGFSSINSPNEINVWNSHKYSTNHFTDLNVKPIAYYQNQHTHSPRQYSPIPEAARISHHSNSSSGRNAKLKSNADRDKYSDGGARSRQNSRFHGDNYFSTNSADIYGTMPEWNNDYQSRNSDWHSELDRHERGIEIFGEEIEDLRIRSNKSERKNGRLQEELDDWKAKLKLSQERNLQLENEN----EIFILEMENSKNSNEKLRSE---------------------------------------CKILQNETN----QYLAQINQLQSALKESKGINGRLQQDFDDCKVKLNHSQRRNSQLESANQYEHQIGTNKCANCAESTRQLQNQKSKVKKKIEELAKYYQLKMENSKSSIEKLKSELNQSVNKCKSLLNENDSNKSQFSGQIGKLELIIKEINEEKQILQNNYNKSGEENENLKF 428 HSP 2 Score: 259.225 bits (661), Expect = 1.155e-76 Identity = 152/220 (69.09%), Postives = 170/220 (77.27%), Query Frame = 2 Query: 713 FGEEIEDLRIRSNKSERKYGRLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHEEQILQWQTEMKNLTTKYVKLQSERDNLKLLVKEIDKENKILQNNYNKSDKENENLKF 1372 F +IE L+ +S+RK G LQ+DF+DCK KL HSQ RN QLE N+ + K+ IEE+ KDFQLKME+S SS EK+ +LN+S +KCKSLQNEND++KS FSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHE+QILQWQTEMKNLTTKY KLQSERDNLKLLVKEIDKENKILQNNYNKSDKENENLKF Sbjct: 651 FAAQIEQLQSALKESDRKMGSLQRDFEDCKEKLKHSQERNLQLE-------------------------NEMAVNKRTIEEITKDFQLKMEDSNSSNEKMLLQLNRSEDKCKSLQNENDNDKSHFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHEQQILQWQTEMKNLTTKYDKLQSERDNLKLLVKEIDKENKILQNNYNKSDKENENLKF 845 HSP 3 Score: 192.2 bits (487), Expect = 5.584e-53 Identity = 131/211 (62.09%), Postives = 146/211 (69.19%), Query Frame = 2 Query: 770 GRLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHEEQILQWQTEMKNLTTKYVKLQSERDNLKL--------------LVKEIDKENKILQNNYNKSDKENE 1360 GRLQQDFDDCKVKLNHSQRRNSQLESAN ++ QIGTN+C NCAESTRQLQNQKSKVKKKIEELAK +QLKMENSKSSIEKLKSELN+SVNKCKSL NENDSNKSQFSGQIGKLELIIK+INEE+QILQN Y+ K E +NLK ++KE D+ N+ LQ + K +E Sbjct: 286 GRLQQDFDDCKVKLNHSQRRNSQLESANQYEHQIGTNKCANCAESTRQLQNQKSKVKKKIEELAKYYQLKMENSKSSIEKLKSELNQSVNKCKSLLNENDSNKSQFSGQIGKLELIIKEINEEKQILQNNYN------------------------------KSGEENENLKFQCNKYLAEINKLESVLKESDRTNRRLQQEFEAKSKHSE 466 HSP 4 Score: 104.76 bits (260), Expect = 1.136e-23 Identity = 87/186 (46.77%), Postives = 120/186 (64.52%), Query Frame = 2 Query: 716 GEEIEDLRIRSNK--------------SERKYGRLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHEEQILQWQTEM 1231 GEE E+L+ + NK S+R RLQQ+F+ K HS+R NSQLESAN FKSQ+ N+ EN AE +QL+N+K K+K+EE+ KDFQLKMEN SIEKLK +L++S NK KSLQNEND+ KS F+ QI +L+ +K+ + + LQ +++CK + S +E+ LQ + EM Sbjct: 420 GEENENLKFQCNKYLAEINKLESVLKESDRTNRRLQQEFE---AKSKHSER-NSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEIIKDFQLKMENLNRSIEKLKLQLSQSENKFKSLQNENDNIKSGFAAQIEQLQSALKESDRKMGSLQRDFEDCKEKLKHS--QERNLQLENEM 599
BLAST of SMED30025065 vs. Planmine SMEST
Match: SMESG000036102.1 (SMESG000036102.1) HSP 1 Score: 379.022 bits (972), Expect = 1.607e-120 Identity = 252/478 (52.72%), Postives = 295/478 (61.72%), Query Frame = 2 Query: 137 MSFGRASRQVTSSSNILLSKNQFPLTQNKQNXXXXXXXAHNKNRRQISASNSKTTVPSFSSINSPNEINVWNSHKHSTNHFTDLNGKPITYDHNQHTHSPRQYTXXXXXXXXXXXXXXXXGRNAKLKSNADRDKYSDGGGRSRQNSRFHGDNYFSTNSADIYGTMPKWNDDYQSRNRDLHSELDRHERWIERFGEEIEDLRIRSNKSERKYGRLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQS-----------NHEEQI--------------LQ----------------WQTEMKNLTTKYVKLQSERDN-------------------------LKLLVKEIDKENKILQNNYNKSDKENENLKF 1372 MSFG+ASRQ+T NIL +KN FPLTQ KQNSSSRSSSAHNKN RQISASNSKT FSSINSPNEINVWNSHK+STNHFTDLN KPI Y NQHTHSPRQY+ + EA+RISHHS+SSSGRNAKLKSNADRDKYSDGG RSRQNSRFHGDNYFSTNSADIYGTMP+WN+DYQSRN D HSELDRHER IE FGEEIEDLRIRSNKSERK GRLQ++ DD K KL SQ RN QLE+ N +I + EN S +L+++ CK LQNE + Q+ QI +L+ +K+ LQ +D+CK++ N S +E QI LQ +Q +M+N + KL+SE + L+L++KEI++E +ILQNNYNKS +ENENLKF Sbjct: 1 MSFGKASRQLT---NILPNKNSFPLTQYKQNSSSRSSSAHNKNLRQISASNSKTIDLGFSSINSPNEINVWNSHKYSTNHFTDLNVKPIAYYQNQHTHSPRQYSPIPEAARISHHSNSSSGRNAKLKSNADRDKYSDGGARSRQNSRFHGDNYFSTNSADIYGTMPEWNNDYQSRNSDWHSELDRHERGIEIFGEEIEDLRIRSNKSERKNGRLQEELDDWKAKLKLSQERNLQLENEN----EIFILEMENSKNSNEKLRSE---------------------------------------CKILQNETN----QYLAQINQLQSALKESKGINGRLQQDFDDCKVKLNHSQRRNSQLESANQYEHQIGTNKCANCAESTRQLQNQKSKVKKKIEELAKYYQLKMENSKSSIEKLKSELNQSVNKCKSLLNENDSNKSQFSGQIGKLELIIKEINEEKQILQNNYNKSGEENENLKF 428 HSP 2 Score: 259.225 bits (661), Expect = 2.108e-76 Identity = 152/220 (69.09%), Postives = 170/220 (77.27%), Query Frame = 2 Query: 713 FGEEIEDLRIRSNKSERKYGRLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHEEQILQWQTEMKNLTTKYVKLQSERDNLKLLVKEIDKENKILQNNYNKSDKENENLKF 1372 F +IE L+ +S+RK G LQ+DF+DCK KL HSQ RN QLE N+ + K+ IEE+ KDFQLKME+S SS EK+ +LN+S +KCKSLQNEND++KS FSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHE+QILQWQTEMKNLTTKY KLQSERDNLKLLVKEIDKENKILQNNYNKSDKENENLKF Sbjct: 651 FAAQIEQLQSALKESDRKMGSLQRDFEDCKEKLKHSQERNLQLE-------------------------NEMAVNKRTIEEITKDFQLKMEDSNSSNEKMLLQLNRSEDKCKSLQNENDNDKSHFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHEQQILQWQTEMKNLTTKYDKLQSERDNLKLLVKEIDKENKILQNNYNKSDKENENLKF 845 HSP 3 Score: 192.2 bits (487), Expect = 6.071e-53 Identity = 131/211 (62.09%), Postives = 146/211 (69.19%), Query Frame = 2 Query: 770 GRLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHEEQILQWQTEMKNLTTKYVKLQSERDNLKL--------------LVKEIDKENKILQNNYNKSDKENE 1360 GRLQQDFDDCKVKLNHSQRRNSQLESAN ++ QIGTN+C NCAESTRQLQNQKSKVKKKIEELAK +QLKMENSKSSIEKLKSELN+SVNKCKSL NENDSNKSQFSGQIGKLELIIK+INEE+QILQN Y+ K E +NLK ++KE D+ N+ LQ + K +E Sbjct: 286 GRLQQDFDDCKVKLNHSQRRNSQLESANQYEHQIGTNKCANCAESTRQLQNQKSKVKKKIEELAKYYQLKMENSKSSIEKLKSELNQSVNKCKSLLNENDSNKSQFSGQIGKLELIIKEINEEKQILQNNYN------------------------------KSGEENENLKFQCNKYLAEINKLESVLKESDRTNRRLQQEFEAKSKHSE 466 HSP 4 Score: 104.76 bits (260), Expect = 1.248e-23 Identity = 87/186 (46.77%), Postives = 120/186 (64.52%), Query Frame = 2 Query: 716 GEEIEDLRIRSNK--------------SERKYGRLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHEEQILQWQTEM 1231 GEE E+L+ + NK S+R RLQQ+F+ K HS+R NSQLESAN FKSQ+ N+ EN AE +QL+N+K K+K+EE+ KDFQLKMEN SIEKLK +L++S NK KSLQNEND+ KS F+ QI +L+ +K+ + + LQ +++CK + S +E+ LQ + EM Sbjct: 420 GEENENLKFQCNKYLAEINKLESVLKESDRTNRRLQQEFE---AKSKHSER-NSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEIIKDFQLKMENLNRSIEKLKLQLSQSENKFKSLQNENDNIKSGFAAQIEQLQSALKESDRKMGSLQRDFEDCKEKLKHS--QERNLQLENEM 599
BLAST of SMED30025065 vs. Planmine SMEST
Match: SMESG000038532.1 (SMESG000038532.1) HSP 1 Score: 354.755 bits (909), Expect = 2.085e-111 Identity = 236/433 (54.50%), Postives = 276/433 (63.74%), Query Frame = 2 Query: 137 MSFGRASRQVTSSSNILLSKNQFPLTQNKQNXXXXXXXAHNKNRRQISASNSKTTVPSFSSINSPNEINVWNSHKHSTNHFTDLNGKPITYDHNQHTHSPRQYTXXXXXXXXXXXXXXXXGRNAKLKSNADRDKYSDGGGRSRQNSRFHGDNYFSTNSADIYGTMPKWNDDYQSRNRDLHSELDRHERWIERFGEEIEDLRIRSNKSERKYGRLQQDFDDCKVKLNHSQRRNSQLESAN---YFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAK-----------------DFQLKMXXXXXXXXXXXXXXXXX----VNKC-------KSLQ-----NENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHEEQILQWQTEMKNLTTKYVKLQSERDNLKLLVKEIDKENKILQ 1327 MSFGRASRQVTSSSNIL SKNQFPLTQ KQNS SRSSSAHNKNRRQISASNSKT VPSFSSINSPNEINVWNSHKHSTNHFTDLN Y Q H+ + + + G N ++ G RSRQNSR H DNYFSTNSADIYGTMPKWNDDYQSRNRD HSELDRHER IERFGEEIEDLRIRSNKSERK GRLQ++ DDCK KL SQ RNSQLE+ N + + N E + LQN+ ++ +I +L D ++K+ +S+ +L+S N+C + LQ NENDSNKSQFSGQIGKLELIIKQINEERQILQ+ Y N+S E + L++Q + KY+ +E + L+ ++KE D+ N+ LQ Sbjct: 1 MSFGRASRQVTSSSNILPSKNQFPLTQYKQNSLSRSSSAHNKNRRQISASNSKTIVPSFSSINSPNEINVWNSHKHSTNHFTDLNDNIHLY---QKLHAFL-IIPAHQVEEMQSLNPMLIGINILIE-----------GARSRQNSRSHRDNYFSTNSADIYGTMPKWNDDYQSRNRDWHSELDRHERGIERFGEEIEDLRIRSNKSERKNGRLQEELDDCKAKLKLSQERNSQLENENEIFILEMENSNNSNEKLRSECKILQNETNQYLAQINQLQSALKESKGINGRLQQDFDDCKVKLNHSQRRNSQLESANQYEHQIGTNQCANCAESTRQLQNQKSKNENDSNKSQFSGQIGKLELIIKQINEERQILQSNY-------NKSGEENENLKFQHD------KYL---AEINKLESMLKESDRTNRRLQ 402 HSP 2 Score: 255.758 bits (652), Expect = 3.623e-75 Identity = 158/222 (71.17%), Postives = 179/222 (80.63%), Query Frame = 2 Query: 707 ERFGEEIEDLRIRSNKSERKYGRLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECKLRFNQSNHEEQILQWQTEMKNLTTKYVKLQSERDNLKLLVKEIDKENKILQNNYNKSDKENENLKF 1372 +++ EI L +S+R RLQQ+ D K HS NSQLES N ++ QI NQC NC E +QLQN+ +VK KIEE+ KDFQLKME+S S+IEKLKSELN+SVNKCKSLQNEND++KS+F Q K E IIK+INEERQILQNKYDECKLRFNQSNHE+QILQWQTEMKNLTTKYVKLQSERDNLKLLVKEIDKENKILQNNYNKS +ENENLKF Sbjct: 378 DKYLAEINKLESMLKESDRTNRRLQQEID---AKSKHSDW-NSQLESTNQYEHQINRNQCTNCEELIKQLQNENERVKSKIEEITKDFQLKMEDSNSTIEKLKSELNQSVNKCKSLQNENDNDKSKFLEQNRKFESIIKEINEERQILQNKYDECKLRFNQSNHEKQILQWQTEMKNLTTKYVKLQSERDNLKLLVKEIDKENKILQNNYNKSGEENENLKF 595 HSP 3 Score: 93.2041 bits (230), Expect = 6.767e-20 Identity = 76/156 (48.72%), Postives = 99/156 (63.46%), Query Frame = 2 Query: 707 ERFGEEIEDLRIRSNKSERKYGRLQQDFDDCKVKLNHSQRRNSQLESANYFKSQIGTNQCENCAESTRQLQNQKSKVKKKIEELAKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQNENDSNKSQFSGQIGKLELIIKQINEERQILQNKYDECK 1174 +++ EI L +S+R RLQQ+FD K HS+R NSQLESAN FKSQ+ N+ EN AE +QL+N+K KKK+EE+ KDFQLKMENS SIEKLK +C++LQN ND +LE IK+I++ +QILQ KYD+ K Sbjct: 598 DKYLAEINKLESVLKESDRTNSRLQQEFD---AKSKHSER-NSQLESANLFKSQMDRNRFENNAELIKQLENEKEIDKKKVEEITKDFQLKMENSNRSIEKLKL-------ECRNLQNAND-----------QLESTIKEIDKGKQILQKKYDDVK 731 HSP 4 Score: 86.2705 bits (212), Expect = 1.333e-17 Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 3 Query: 432 LQDNIHLYQKLHAFLIIPAHQVEEMQSLNPMLIGINILMEG 554 L DNIHLYQKLHAFLIIPAHQVEEMQSLNPMLIGINIL+EG Sbjct: 84 LNDNIHLYQKLHAFLIIPAHQVEEMQSLNPMLIGINILIEG 124 The following BLAST results are available for this feature:
BLAST of SMED30025065 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30025065 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30025065 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30025065 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30025065 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30025065 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30025065 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30025065 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30025065 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30025065 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30025065 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30025065 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30025065 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30025065 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30025065 ID=SMED30025065|Name=SMED30025065|organism=Schmidtea mediterranea sexual|type=transcript|length=1373bpback to top protein sequence of SMED30025065-orf-1 >SMED30025065-orf-1 ID=SMED30025065-orf-1|Name=SMED30025065-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=412bp MSFGRASRQVTSSSNILLSKNQFPLTQNKQNSSSRSSSAHNKNRRQISASback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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