WD_REPEATS_REGION domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30025020 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A0R3W1Y2 (WD_REPEATS_REGION domain-containing protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS3777 PE=4 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 1.186e-63 Identity = 148/453 (32.67%), Postives = 226/453 (49.89%), Query Frame = 1 Query: 166 ENKITTFCLKKMNCKKSLERAIGIGKMINYGLEPIFMFSSVESYKNIPPIDDAGEDDVDVFSVQFNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLYMSQAKKEGFETIITEQN-ETYAFDISADGMELATCGRDRNIRIYRFA-----NAGF--------------CEETRLG----SLIPKFIPMAVDEDMRE-----------------------------MGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAKINPIWKISGPHVCSPDGIDIKGYEIFTASWRARNALQIWDLRN-------PTLTNI----------------PLETVPL--IGKGWNCEIGDTEYLYGVKVGDNHXXXXXXXXXXXXRVVNRANQRPIGEVYAASCVNGLDIAFGGRQIVAGCSDGRIIL 1290 E + + C K +C+ ++A + + G PI VE EDD V +++F+ DG +L+VG N++VR+IN + ++L ++PS + LGMPITC+RY+P ++ C+P G ++ + EGFET+ITE+N +TY FDIS DGMELAT G D IR+Y F C+ G S+ P +P++ D+++ GH M I A+++HP ++SA WD+ VK+WDTR + P+ I GP VCSP+G+D++G E+ TASWR R AL+IWDLRN P +N+ P E + + + KG + G EYLY ++ + +I+ GSGF+ +RV +R + P+ + S V +D GR I GC+ G I + Sbjct: 53 EKSVCSHCGTKCSCRDDCKKAPMSNPLCHKG--PI-----VE------------EDDFGVHTLRFSADGRQLIVGSANTSVRIINVIEGQQQLLLRPSSWKLGMPITCLRYVPTNLKWVLGCTPQGDIFCLDSTYEGFETLITEKNQQTYCFDISPDGMELATAGTDTAIRLYSLCFGQQKTTSFETHSTDSGKPEKRPCKRFAGGKADQSIKPFIVPISYKGDVKQDPCSEEADTDTVGPQILGYHPTGPADNYTEGHSMRITALRYHPTQCRLLISASWDHHVKVWDTRTRNGPVHDIYGPLVCSPEGLDVEGDELLTASWRKRQALEIWDLRNLHATESSPKGSNLANGDVGNTLRKQAYMQPAECIDVADVVKGQCKDAGGGEYLYAARLLPSRAIVCGGSGFNEVRVFHRDTKMPVIRIPTDSVVQTIDSVLEGRFIAIGCASGAITI 486
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A158QET4 (WD_REPEATS_REGION domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS7885 PE=4 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 5.138e-58 Identity = 138/392 (35.20%), Postives = 200/392 (51.02%), Query Frame = 1 Query: 316 DDAGEDDVDVFSVQFNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLYMSQAKKEGFETIITEQNE-TYAFDISADGMELATCGRDRNIRIY---------------------------RFANAGF----CEETR---------LGSLIPKFIPM--AVDEDMREMGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAKINPIWKISGPHVCSPDGIDIKGYEIFTASWRARNALQIWDLRN-----------------PTLTN----IPLETVPLIGKGWN--CEIGDT-EYLYGVKVGDNHXXXXXXXXXXXXRVVNRANQRPIGEVYAASCVNGLDIAFGGRQIVAGCSDGRIIL 1290 D + DD + ++ F+ DG +LVVG N++VRVI + I+PSK+ LGMPITC+RY+P + ++ +P G ++ +EGFET+I E+N TY +IS+DG E+AT G D +IRIY RF C ++ L S +P+ + A D GH M I A+K+HP +VSA WD+ VK+WDTR + PI +I GP VCSPDG+D+ G+ + TASWR AL+IWDLRN TL P ET+P +G C G++ EYLY ++ +H++I GSGF +RV++R + + + S V +D GR + GC DG + + Sbjct: 72 DFSDADDFGIHTLIFSADGKQLVVGSANTSVRVIGVPDGGQLREIRPSKWKLGMPITCLRYLPNNLNWVLGSTPEGEIFCVNPNQEGFETLIREENRLTYCLNISSDGAEMATAGNDTSIRIYDIHPGQLSGSETCSIKGKSNKVPSTKLRFGERSVKPVGCSASKVIRNRQNPSLNSRMPEILGYRPAGPADNHTEGHSMRITALKYHPTQPRILVSASWDHYVKIWDTRTRNKPIDEIYGPLVCSPDGLDVDGHYVLTASWRKSQALEIWDLRNLCTKKRDHRLENNGDVLNTLNKHAYMCPAETIP-VGNSTEILCGEGESGEYLYAARLLPSHAVICGGSGFREVRVMSRETKMALIRIPVDSIVQTIDTVLEGRFVGIGCVDGSLTI 462
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A0R3THM7 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS6564 PE=4 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 4.678e-50 Identity = 109/343 (31.78%), Postives = 164/343 (47.81%), Query Frame = 1 Query: 205 CKKSLERAIGIGKMINYGLEPIFMFSSVESYKNIPPID---------DAGE--------------------------DDVDVFSVQFNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLYMSQAKKEGFETIITEQN-ETYAFDISADGMELATCGRDRNIRIY-------------------------------RFANAGFC---------EETRLGSLIPKFIPM--AVDEDMREMGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAKINPIWKISGPHVCSPDGIDIKGYEIFTASWRARNALQI 999 + LE AI ++ L PIF F+ + + + P D +GE DD + ++ DG +L+VG N++V+VI + I+PSK+ LGMPITC+RY+P + ++ +P G ++ +EGFET+I E+N +TY DIS+DG E+AT G D +IRIY R+ C + L S +P+ + A D GH M I A+K+HP + ++SA WD+ VK+WDTR + PI++I GP VCSPDG+D+ G+ + TASWR AL++ Sbjct: 2 ARSQLESAILTSALVENDLTPIFRFTKIRFHNTLSPPDYRSNHIKEAKSGEGFRRSSSFEVPPQSRLWSAKDCFPDADDFSIHTLALGADGKQLIVGSANTSVKVIGVPDGGQLREIRPSKWRLGMPITCLRYIPNNINWVLGSTPEGEIFCVSPNQEGFETLIKEENRQTYCLDISSDGTEMATAGNDSSIRIYDIHPTQLRGSETCSVKGKSSTALPTILYFGDRYEKPVGCSVAKVAKGRQNPSLNSRMPQILGYRPAGPADNYTDGHSMRITALKYHPAHPSILLSASWDHYVKIWDTRTRNKPIYEIYGPLVCSPDGLDVDGHYVLTASWRKSQALEV 344
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A1S3I933 (vegetative incompatibility protein HET-E-1 OS=Lingula unguis OX=7574 GN=LOC106161849 PE=4 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 2.026e-43 Identity = 115/362 (31.77%), Postives = 179/362 (49.45%), Query Frame = 1 Query: 208 KKSLERAIGIGKMINYGLE-PIFMFSSVESYKNIPPIDDAGEDDVDVFSVQFNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLYMSQAKKEGFETIITEQ-NETYAFDISADGMELATCGRDRNIRIYRFANAGFCEETRLGSLIPKFI---PMAVDEDMREMGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAKINPIWKISGPHVCSPDGIDIKGYEIFTASWRARNALQIWDLRNPTL-TNIPLETVPLIGKGWNCEIGDTEYLYGVKVGDNHXXXXXXXXXXXXRVVNRANQRPIGEVYAASCVNGLDIAFGGRQIVAGCSD 1275 ++ LE AI GK I G + P S++E NI + + ++S+QF+ DG L VG NS + +++ N ++ SK+ G+PI C+R+ P + + A G++Y ++ II+E+ NE D S D AT G+D +IRIY +T+ L+ ++ + + + +GH I A+KFHP+N ++ GWDN +K+WD R+ I GPH+C DG+D++G++I T SW NALQI+D L NIP P G+G +YLY + +N +I GSG + +N +GEV + V +D GGR G D Sbjct: 3 RRRLEAAIQAGKQIEQGTQWP----SNLEKVDNIKQVSMRDIERDGIYSLQFSYDGNTLAVGYGNSGIEILDALTGNPVQELRKSKY-GGLPIGCLRFNPQQQHILFAGGADGNVYSCNSQTGECTEIISEKHNEINCLDFSMDSFSFATAGKDLDIRIY---------DTKTQELVTEYKGYHQYKPNPEEQGVGHAQRIFALKFHPENDNIFITGGWDNHLKVWDKRSSDGVKRTIGGPHICG-DGLDVRGFQILTGSWTHHNALQIFDYSTGKLQQNIPF---PDNGEG--------QYLYCAQFCENDVVIAGGSGTKSAKAINITTGECLGEVKMSKAVQAMDSTKGGRLFAIGGGD 338
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Match: A0A504YYU0 (Coronin protein crn1 OS=Fasciola gigantica OX=46835 GN=FGIG_09993 PE=4 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 4.514e-41 Identity = 90/259 (34.75%), Postives = 132/259 (50.97%), Query Frame = 1 Query: 328 EDDVDVFSVQFNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLYMSQAKKEGFETIITEQNETYAFDISADGMELATCGR--------------------DRNIRIYRFANAGFCEETRLGSLIPK----------------FIPMAVDEDMREMGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAKINPIWKISGPHVCSPDGIDIKGYEIFTASWRARNALQ 996 +DD + SVQF+ DG L+ G N++VRVI+TA ++++ +PSK+ LGMPIT IR+MP K +AC+ G ++ EGFET+ + +DGM R D +R Y ++ + +P+ +IP + +M E GH I AV++HP + SAGWDN+VK+WDTR P+W+I GPHV SPDG+DI + TASWRAR +++ Sbjct: 139 QDDYAIHSVQFSGDGKLLLAGSANTSVRVIHTADGSQRIIPRPSKWALGMPITAIRFMPPKLIWAVACNSHGEVFAFNPNAEGFETLFKASYRIDNSNTLSDGMNTQGAKRESSHKYTHPHYPGGRPNQIVDETVRRYVLTRCYGTKDLQDSPSVPEPASYTGHKQPVPRIMEYIPTSPGVNMTE-GHSKRIMAVRYHPSRFALLFSAGWDNLVKLWDTRLPTGPVWQIYGPHVASPDGLDIDDDYLLTASWRARASIE 396
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000044062.1 (WD repeat-containing protein 5B-like [Source:NCBI gene;Acc:103035992]) HSP 1 Score: 91.6633 bits (226), Expect = 1.159e-19 Identity = 69/242 (28.51%), Postives = 107/242 (44.21%), Query Frame = 1 Query: 328 EDDVDVFSVQFNQDGTELVVGGMNSTVRVINTAQPNRKLTIKP-SKFILGMPITCIRYMPVK--YDRIIACSPSGHL-----------YMSQAKKEGFETIITEQNETYAFDISADGMELATCGRDRNIRIYRFANAGFCEETRLGSLIPKFIPMAVDEDMREMGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAKINPIWKISGPHVCSPDGIDIK--GYEIFTASWRARNALQIWD 1005 E D + QF+ DG+ L VG N T++V +T T++ S I G+P+T +R+ + ++A SG + + + K+ E + E+ S G T G D + +Y C+ RL +D GH I AV FHP+ + ++ GWDN V+ WDTR + + I + GPHVC D + I +I + SWR N L++WD Sbjct: 76 ECDCVAMTCQFSTDGSLLAVGLCNGTIKVYSTDSGELTQTLRDNSSVISGLPVTGLRFTCSGNLHHLLLATYASGCVRCWYVWGGQCVWWLKESKDSEEDEDPQPRESLCLSTSLSGERAVTGGSDATVHLYDLNT---CQ--RLQVCRASASKAVMD------GHRFRIFAVSFHPERETEFITGGWDNTVQFWDTRMQ-HSIRMLYGPHVCG-DALHINPASNQILSGSWRRYNTLEVWD 304
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Match: POC1B (POC1 centriolar protein homolog B [Source:NCBI gene;Acc:103029957]) HSP 1 Score: 49.6766 bits (117), Expect = 4.507e-6 Identity = 53/225 (23.56%), Postives = 89/225 (39.56%), Query Frame = 1 Query: 358 FNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLYMSQAKKEGFETIITEQNETY-AFDISADGMELATCGRDRNIRIYRFANAGFCEETRLGSLIPKFIPMAVDEDMREMGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAK--INPIWKISGPHVCSPDGIDIKGYEIFTASWRARNALQIWDLRNPTL 1023 F+ +L G + TV V N R + K + +T + + P D + + S + + +G T+ T T + + S+DG L T D++++I+ KFI ++++ H + +F PD + S G D V++WDT ++ IN GP +D AS A N L+IWD+R L Sbjct: 39 FSPSKKQLATGSSDKTVMVWNLNPKARAFRFEGHKDV----VTAVHFSP-SGDLLASASRDKTVRLWTPNIKGDSTVFTAHTATVRSVNFSSDGQRLITASDDKSLKIWSVHRQ-------------KFI-YSLNQ------HTNWVRCARFSPDGRL-VASCGDDRTVRLWDTSSRQCINTFTDYGGPATF----VDFNASGTCIASSGADNTLKIWDIRTNKL 233
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Match: POC1B (POC1 centriolar protein homolog B [Source:NCBI gene;Acc:103029957]) HSP 1 Score: 49.6766 bits (117), Expect = 5.017e-6 Identity = 53/225 (23.56%), Postives = 89/225 (39.56%), Query Frame = 1 Query: 358 FNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLYMSQAKKEGFETIITEQNETY-AFDISADGMELATCGRDRNIRIYRFANAGFCEETRLGSLIPKFIPMAVDEDMREMGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAK--INPIWKISGPHVCSPDGIDIKGYEIFTASWRARNALQIWDLRNPTL 1023 F+ +L G + TV V N R + K + +T + + P D + + S + + +G T+ T T + + S+DG L T D++++I+ KFI ++++ H + +F PD + S G D V++WDT ++ IN GP +D AS A N L+IWD+R L Sbjct: 26 FSPSKKQLATGSSDKTVMVWNLNPKARAFRFEGHKDV----VTAVHFSP-SGDLLASASRDKTVRLWTPNIKGDSTVFTAHTATVRSVNFSSDGQRLITASDDKSLKIWSVHRQ-------------KFI-YSLNQ------HTNWVRCARFSPDGRL-VASCGDDRTVRLWDTSSRQCINTFTDYGGPATF----VDFNASGTCIASSGADNTLKIWDIRTNKL 220
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Match: POC1B (POC1 centriolar protein homolog B [Source:NCBI gene;Acc:103029957]) HSP 1 Score: 48.9062 bits (115), Expect = 6.763e-6 Identity = 53/225 (23.56%), Postives = 89/225 (39.56%), Query Frame = 1 Query: 358 FNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLYMSQAKKEGFETIITEQNETY-AFDISADGMELATCGRDRNIRIYRFANAGFCEETRLGSLIPKFIPMAVDEDMREMGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAK--INPIWKISGPHVCSPDGIDIKGYEIFTASWRARNALQIWDLRNPTL 1023 F+ +L G + TV V N R + K + +T + + P D + + S + + +G T+ T T + + S+DG L T D++++I+ KFI ++++ H + +F PD + S G D V++WDT ++ IN GP +D AS A N L+IWD+R L Sbjct: 26 FSPSKKQLATGSSDKTVMVWNLNPKARAFRFEGHKDV----VTAVHFSPSG-DLLASASRDKTVRLWTPNIKGDSTVFTAHTATVRSVNFSSDGQRLITASDDKSLKIWSVHRQ-------------KFI-YSLNQ------HTNWVRCARFSPDGRL-VASCGDDRTVRLWDTSSRQCINTFTDYGGPATF----VDFNASGTCIASSGADNTLKIWDIRTNKL 220
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Nematostella
Match: EDO48733 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RIL3]) HSP 1 Score: 117.087 bits (292), Expect = 3.147e-29 Identity = 96/358 (26.82%), Postives = 165/358 (46.09%), Query Frame = 1 Query: 298 KNIPPIDDAG------------EDDVDVFSVQFNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLYMSQAKK-EGFETIITEQNETYAFDISADGMELATCGRDRNIRIY---------RFANAGFCEETRLGSLIPKFIPMAVDEDMREMGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAKINPIWKISGPHVCSPDGIDIKGYEIFTASWRARNALQIWDLRNPTLTNIPLETVPLIGKGWNC-EIGDTEYLYGVKVGDNHXXXXXXXXXXXXRVVNRANQRPIGEV-YAASCVNGLDIAFGGRQIVAGCSDGRIILCRM 1299 +++PPI D D + VFSV + L G N V+V + ++ +K + G+P+T +++ P K DR+++ + G + +++ NE D S DG AT G+DR +R+Y FA + E R S+I +P E GHG + ++FHP + ++ GWD +K+WD R + I I GP++C DGIDI E+ T+SW + ALQIWD + L +E VP + C E G E+LY + ++ ++ GSG ++++ R + + + ++ LD++ GG+ + + + L + Sbjct: 6 RSVPPIRDLSVPKVTAIKDLDFGDIMGVFSVHLSPRDQYLAAGCGNGAVQVYSCDTGKKRRPLKHGS-LYGLPVTTVKFFPFKDDRLMSTTSDGTITCWDLDNWSHMKSVDEPHNEISTLDFSHDGKIFATAGKDRKVRVYDSDTMQIKLTFAGSEATEPARDVSMI---VP--------EGGHGKKVFGLRFHPFDDNVFLTGGWDRCLKIWDVRVD-HVIRSIHGPYICG-DGIDICQDEVMTSSWLHQKALQIWDYGSGEL----IENVP-----FPCGEHG--EFLYVGRFVNSQVVVAGGSGTKDVKILTRKPHKVVASIDDEGKPIHALDVSPGGQLLALAGTGTHVKLVSL 338
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Nematostella
Match: EDO44597 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RV80]) HSP 1 Score: 86.6557 bits (213), Expect = 9.411e-19 Identity = 66/237 (27.85%), Postives = 104/237 (43.88%), Query Frame = 1 Query: 328 EDDVDVFSVQFNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILG-MPITCIRYMPVKYDR-----IIACSPSGHLYMSQAKKEGFETIITEQNETYAFDISADGMELATCGRDRNIRIYRFANAGFCEETR--LGSLIPKFIPMAVDEDMREMGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAKI-NPIWKISGPHVCSPDGIDIK--GYEIFTASWRARNALQIWD 1005 E +V +FN DG+ + VG N TV+V N ++ + + +P+TC+R+ + ++A G + A + E + A I+ T G D I +Y E+T+ + + P + +D GH + +V+F P +S GWD+ V+ WDTR + I KI GPH+C D +DI + I T SWR + LQIWD Sbjct: 16 ETSSEVMCCRFNLDGSLIAVGLANGTVKVYLAENGNCVYSLHDQETLNSHLPVTCLRWKAAGANEDFGNILLATYADGCVKHWHASTSKCLSTQKEGRQVLACSINFSADRFVTSGSDTKIFLYD-------EKTKQTVSTFQPSTSHLVMD------GHMSRVFSVQFVPGEDHVFLSGGWDDTVQYWDTRVDAKHSIRKIFGPHICG-DALDIHPMNFNILTGSWRKDDTLQIWD 238
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Nematostella
Match: EDO28937 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T527]) HSP 1 Score: 77.0258 bits (188), Expect = 2.724e-15 Identity = 67/243 (27.57%), Postives = 105/243 (43.21%), Query Frame = 1 Query: 340 DVFSVQFNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLYMSQAKKEGFETIITEQNETYAFDISADGMELATCGRDRNIRIY---------RFANAGFCEETRLGSLIPKFIPMAVDEDMREMGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAKINPIWKISGPHVCSPDGIDIKGYEIFTASWRARNALQIWDLRNPTL-TNIPL 1038 ++ ++ F+ DG G + VRV ++ KLT S+ P R + C+ L S + + + + + + +EL DR +R+Y FA + E R S+I +P E GHG + ++FHP + ++ GWD +K+WD R + I I GP++C DGIDI E+ TASW + ALQIWD + L N+P Sbjct: 135 EISTLDFSHDGKIFATAGKDRKVRVYDSDTMQVKLTFAGSEAT--EPARSFRAFLSPVVILSLCASKDKLANSDLVSS--KCLKSHGGLCWRLPLRLN-IEL-----DRKVRVYDSDTMQVKLTFAGSEATEPARDVSMI---VP--------EGGHGKKVFGLRFHPFDDNVFLTGGWDRCLKIWDVRVD-HVIRSIHGPYICG-DGIDICQDEVMTASWLHQKALQIWDYGSGELIENVPF 354 HSP 2 Score: 62.7734 bits (151), Expect = 1.037e-10 Identity = 44/159 (27.67%), Postives = 71/159 (44.65%), Query Frame = 1 Query: 208 KKSLERAIGIGKMINYGLEPIFMFSSVESYKNIPPIDDAGEDDVDVFSVQFNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLYMSQAKK-EGFETIITEQNETYAFDISADGMELATCGRDRNIRIY 681 +K LE A+ GK I P SV I +D D + VFSV + L G N V+V + ++ +K + G+P+T +++ P K DR+++ + G + +++ NE D S DG AT G+DR +R+Y Sbjct: 5 RKRLEDALQAGKDIESDESPPIRDLSVPKVTAIKDLDFG--DIMGVFSVHLSPRDQYLAAGCGNGAVQVYSCDTGKKRRPLKHGS-LYGLPVTTVKFFPFKDDRLMSTTSDGTITCWDLDNWSHMKSVDEPHNEISTLDFSHDGKIFATAGKDRKVRVY 160
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Nematostella
Match: EDO45890 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RRV3]) HSP 1 Score: 48.521 bits (114), Expect = 3.850e-6 Identity = 60/258 (23.26%), Postives = 104/258 (40.31%), Query Frame = 1 Query: 361 NQDGTELVVGGMNSTVRVINTAQPNR---KLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLY----MSQAKKEGFETIITE------------QNETYAFDISADGMELATCGRDRNIRIYRFANAGFCEETRLGSLIP---KFIPMAVDE------DMRE--------MGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAKINPIWKISGPHVCSPDGIDI---KGYEIFTASWRARNALQIWDLRNP 1017 ++DG+++ V G N ++++ Q N+ K+ ++ + L IT +++ PV+ D I+A + +++ K+ E + E Q+ T S DG C R + F+ G E R P K A D DMR M H + + +HP++ I + G D VK+WD + K P+ I + S I K Y+I + + + +WD+R P Sbjct: 16 SKDGSQVAVAGRN-VFKIVSIDQDNKFQEKINLRVGRINLNFSITDVQWHPVE-DHILATAAGNGAVVIWNLNKITKQKQELVFYEHKRTVNRIKFHPQDTTLLLSGSQDGT--MNCFDIRKQSVL-FSAHGKSESIRDIEFSPFDGKQFATACDNGNVQLWDMRRTDTYYHQFMAHNGPVFTLDWHPEDRNWIATGGRDKCVKVWDVQGKATPVNNIQT--ISSVSRIKWRPQKKYQIASCALLVDFDIHVWDIRRP 266
BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Match: SMESG000023048.1 (SMESG000023048.1) HSP 1 Score: 734.561 bits (1895), Expect = 0.000e+0 Identity = 367/368 (99.73%), Postives = 367/368 (99.73%), Query Frame = 1 Query: 199 MNCKKSLERAIGIGKMINYGLEPIFMFSSVESYKNIPPIDDAGEDDVDVFSVQFNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLYMSQAKKEGFETIITEQNETYAFDISADGMELATCGRDRNIRIYRFANAGFCEETRLGSLIPKFIPMAVDEDMREMGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAKINPIWKISGPHVCSPDGIDIKGYEIFTASWRARNALQIWDLRNPTLTNIPLETVPLIGKGWNCEIGDTEYLYGVKVGDNHXXXXXXXXXXXXRVVNRANQRPIGEVYAASCVNGLDIAFGGRQIVAGCSDGRIILCRMN 1302 MNCKKSLERAIGIGKMINYGLEPIFMFSSVESYKNIPPIDDAGEDDVDVFSVQFNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLYMSQAKKEGFETIITEQNETYAFDISADGMELATCGRDRNIRIYRFANAGFCEETRLGSLIPKFI MAVDEDMREMGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAKINPIWKISGPHVCSPDGIDIKGYEIFTASWRARNALQIWDLRNPTLTNIPLETVPLIGKGWNCEIGDTEYLYGVKVGDNHSIITSGSGFSGIRVVNRANQRPIGEVYAASCVNGLDIAFGGRQIVAGCSDGRIILCRMN Sbjct: 1 MNCKKSLERAIGIGKMINYGLEPIFMFSSVESYKNIPPIDDAGEDDVDVFSVQFNQDGTELVVGGMNSTVRVINTAQPNRKLTIKPSKFILGMPITCIRYMPVKYDRIIACSPSGHLYMSQAKKEGFETIITEQNETYAFDISADGMELATCGRDRNIRIYRFANAGFCEETRLGSLIPKFIQMAVDEDMREMGHGMTIHAVKFHPDNSCQIVSAGWDNIVKMWDTRAKINPIWKISGPHVCSPDGIDIKGYEIFTASWRARNALQIWDLRNPTLTNIPLETVPLIGKGWNCEIGDTEYLYGVKVGDNHSIITSGSGFSGIRVVNRANQRPIGEVYAASCVNGLDIAFGGRQIVAGCSDGRIILCRMN 368
BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Match: SMESG000047063.1 (SMESG000047063.1) HSP 1 Score: 82.8037 bits (203), Expect = 8.640e-17 Identity = 50/166 (30.12%), Postives = 73/166 (43.98%), Query Frame = 1 Query: 592 TEQNETYAFDISADGMELATCGRDRNIRIYRFANAGFCEETRLGSLIPKFIPMAVDEDMREMGHGMTIHAVKFHPDNSCQ------IVSAGWDNIVKMWDTRAKINPIWKISGPHVCSPDGIDIKGY--EIFTASW-RARNALQIWDLRNPTLTNIPLETVPLIGK 1062 T+ N+ IS D T G D I++Y + G A D + H + I A+K+HP +SA WDN +++WD R K+ +W+ GPHVC DGIDI + I + SW R + LQ+W L P++ L G+ Sbjct: 195 TKLNQILCLSISGDSQRFVTGGDDCIIKVYEITSRTVARYLHKGETHTLQTGRASDAVLNADFHTLRITAIKYHPLGKTDAKYTHIFISASWDNTIQIWDDR-KLGSLWQYLGPHVCGADGIDIDPFTNTIISCSWKREKAVLQVWKFNEYVLNASPIDGRALYGQ 359
BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Match: SMESG000060483.1 (SMESG000060483.1) HSP 1 Score: 71.2478 bits (173), Expect = 4.061e-13 Identity = 45/150 (30.00%), Postives = 69/150 (46.00%), Query Frame = 1 Query: 586 IITEQNETYAFDISADGMELATCGRDRNIRIYRFANAGFCEETRLGSLIPKFIPMAVDEDMREMGHGMTIHAVKFHPDNSCQ------IVSAGWDNIVKMWDTRAKINPIWKISGPHVCSPDGIDI--KGYEIFTASWRA-RNALQIWDL 1008 I+ E N+ A +S DG T G D IR+Y ++ F + D + GH M I AV++HP + +S GWD+ +++WD R +W+ GPHVC D +DI + I +SWR + L++W Sbjct: 160 IMKENNQIMACSVSLDGGRCVTGGEDSVIRVYDLVGKK--------EIMKCFSTNSAD---KMDGHVMRICAVQYHPRGQTEELYSHIFISGGWDDSIQIWDDRHS-RSLWQYYGPHVCGSDALDIDPEQNHILVSSWRRDKTILEVWKF 297 The following BLAST results are available for this feature:
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 4
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 4
BLAST of WD_REPEATS_REGION domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of WD_REPEATS_REGION domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30025020 ID=SMED30025020|Name=WD_REPEATS_REGION domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1428bpback to top protein sequence of SMED30025020-orf-1 >SMED30025020-orf-1 ID=SMED30025020-orf-1|Name=SMED30025020-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=369bp MNCKKSLERAIGIGKMINYGLEPIFMFSSVESYKNIPPIDDAGEDDVDVFback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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