RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)

Overview
NameRMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)
Smed IDSMED30024963
Length (bp)1107
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) (SMED30024963) t-SNE clustered cells

Violin plots show distribution of expression levels for RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) (SMED30024963) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) (SMED30024963) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) (SMED30024963) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30024963

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30024963h1SMcG0015397 SmedASXL_009929SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30024963h1SMcG0015397 SmedASXL_009929SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Human
Match: RMI1 (RecQ mediated genome instability 1 [Source:HGNC Symbol;Acc:HGNC:25764])

HSP 1 Score: 87.4261 bits (215), Expect = 2.354e-18
Identity = 58/187 (31.02%), Postives = 88/187 (47.06%), Query Frame = 2 
Query:  116 QFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFTISDNVME-----FNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGE 661
            + P  W+EACI W+ +E+ N   ++S  +    + +QWL +DLRDLE P    + D ++E      NG    Q+     VSQ  Y Q++ L G    N  V A  +       AK             L+L LTDGI   +G EY+   +  + +  G K  + G  + R  + LL  +N++ LGGE
Sbjct:   21 KVPPMWLEACINWIQEENNN--VNLSQAQMNKQVFEQWLLTDLRDLEHP---LLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVTAEAQVTPKPWEAKPSR---------MLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFRLGVLLLKPENVKVLGGE 193
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Human
Match: RMI1 (RecQ mediated genome instability 1 [Source:HGNC Symbol;Acc:HGNC:25764])

HSP 1 Score: 87.4261 bits (215), Expect = 4.395e-18
Identity = 60/198 (30.30%), Postives = 93/198 (46.97%), Query Frame = 2 
Query:  116 QFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFTISDNVME-----FNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGEYLDYIPNDYTH 694
            + P  W+EACI W+ +E+ N   ++S  +    + +QWL +DLRDLE P    + D ++E      NG    Q+     VSQ  Y Q++ L G    N  V A  +       AK             L+L LTDGI   +G EY+   +  + +  G K  + G  + R  + LL  +N++ LGGE +D +  +Y  
Sbjct:   21 KVPPMWLEACINWIQEENNN--VNLSQAQMNKQVFEQWLLTDLRDLEHP---LLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVTAEAQVTPKPWEAKPSR---------MLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFRLGVLLLKPENVKVLGGE-VDALLEEYAQ 203
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Zebrafish
Match: rmi1 (RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) [Source:NCBI gene;Acc:393149])

HSP 1 Score: 90.8929 bits (224), Expect = 1.553e-19
Identity = 61/185 (32.97%), Postives = 87/185 (47.03%), Query Frame = 2 
Query:  113 FQFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFT-ISDNVMEFNGVMCC-QVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGE 661
             Q P  W++AC+ W+ +E     +S+   +    + +QWL +DLRDL  P L   IS+         CC Q+     VSQ  Y Q++ + GT   N  V A  +       AK             L+L LTDG+ N EG EYR     +  +  G K +L GP  +R  + LL  +NI+ LGGE
Sbjct:   19 IQVPPAWLDACVNWIKEEVDR--ASIPQSQLNQRVLEQWLLTDLRDLAHPVLPERISEAQKTVLSNRCCVQMDSLLDVSQPAYNQLQRIRGTDCSNDQVSAVTQETQRPWEAKPTR---------MLMLQLTDGVQNLEGMEYRPIPALNANLPPGTKLQLVGPIAVRLGVLLLKAENIKVLGGE 192
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Zebrafish
Match: rmi1 (RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) [Source:NCBI gene;Acc:393149])

HSP 1 Score: 90.8929 bits (224), Expect = 1.553e-19
Identity = 61/185 (32.97%), Postives = 87/185 (47.03%), Query Frame = 2 
Query:  113 FQFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFT-ISDNVMEFNGVMCC-QVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGE 661
             Q P  W++AC+ W+ +E     +S+   +    + +QWL +DLRDL  P L   IS+         CC Q+     VSQ  Y Q++ + GT   N  V A  +       AK             L+L LTDG+ N EG EYR     +  +  G K +L GP  +R  + LL  +NI+ LGGE
Sbjct:   19 IQVPPAWLDACVNWIKEEVDR--ASIPQSQLNQRVLEQWLLTDLRDLAHPVLPERISEAQKTVLSNRCCVQMDSLLDVSQPAYNQLQRIRGTDCSNDQVSAVTQETQRPWEAKPTR---------MLMLQLTDGVQNLEGMEYRPIPALNANLPPGTKLQLVGPIAVRLGVLLLKAENIKVLGGE 192
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Xenopus
Match: rmi1 (RecQ mediated genome instability 1 [Source:NCBI gene;Acc:549050])

HSP 1 Score: 85.8853 bits (211), Expect = 9.961e-18
Identity = 63/195 (32.31%), Postives = 95/195 (48.72%), Query Frame = 2 
Query:  116 QFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNL-FTISDNV-MEFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGEYLDYIPNDYTH 694
            + P  W+EACI W+ +E  N  SS+   +    + +QWL +DLRDLE   L   +SD++  E NG    Q+     VSQ  Y Q + L G  + N  V  T + +     AK             L+L LTDG  + +G EYR   + +  +  G K  L+G    R  + LL  +N++ LGGE ++ +  +YT 
Sbjct:   21 KVPNPWLEACINWIQEE--NNGSSLLQAEINKQVFEQWLLTDLRDLEFSVLPANLSDSLKFELNGFYAIQIDSLVDVSQPAYSQHQKLKGKDSTNEQVTCTTQISQKPWEAKPTR---------MLMLQLTDGTQHIQGMEYRPIQVLNANLSPGTKMLLQGSIVCRLGVLLLKPENVKVLGGE-VEALVEEYTQ 203
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Mouse
Match: Rmi1 (RecQ mediated genome instability 1 [Source:MGI Symbol;Acc:MGI:1921636])

HSP 1 Score: 87.4261 bits (215), Expect = 2.508e-18
Identity = 59/187 (31.55%), Postives = 93/187 (49.73%), Query Frame = 2 
Query:  116 QFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFTISDNVMEF-----NGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGE 661
            + P  W+EAC+ W+ +E+ N  +++S  +    + +QWL +DLRDLE P    + D+++E      NG    Q+     VSQ  Y Q++ L G    N  V A      T +T K   EV        L+L LTDG+ + +G EY+      + +  G K  ++G    R  + LL  +N++ LGGE
Sbjct:   21 KVPPMWLEACVNWIQEENNN--ATLSQAQINKQVLEQWLLTDLRDLEHP---LLPDDILELPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVSAE-----TQSTPKPW-EV---RPSRMLMLQLTDGVTHIQGMEYQSIPALHSGLPPGTKILVRGCILFRLGVLLLKPENVKVLGGE 193
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Mouse
Match: Rmi1 (RecQ mediated genome instability 1 [Source:MGI Symbol;Acc:MGI:1921636])

HSP 1 Score: 87.4261 bits (215), Expect = 2.508e-18
Identity = 59/187 (31.55%), Postives = 93/187 (49.73%), Query Frame = 2 
Query:  116 QFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFTISDNVMEF-----NGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGE 661
            + P  W+EAC+ W+ +E+ N  +++S  +    + +QWL +DLRDLE P    + D+++E      NG    Q+     VSQ  Y Q++ L G    N  V A      T +T K   EV        L+L LTDG+ + +G EY+      + +  G K  ++G    R  + LL  +N++ LGGE
Sbjct:   21 KVPPMWLEACVNWIQEENNN--ATLSQAQINKQVLEQWLLTDLRDLEHP---LLPDDILELPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVSAE-----TQSTPKPW-EV---RPSRMLMLQLTDGVTHIQGMEYQSIPALHSGLPPGTKILVRGCILFRLGVLLLKPENVKVLGGE 193
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Mouse
Match: Rmi1 (RecQ mediated genome instability 1 [Source:MGI Symbol;Acc:MGI:1921636])

HSP 1 Score: 87.4261 bits (215), Expect = 2.508e-18
Identity = 59/187 (31.55%), Postives = 93/187 (49.73%), Query Frame = 2 
Query:  116 QFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFTISDNVMEF-----NGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGE 661
            + P  W+EAC+ W+ +E+ N  +++S  +    + +QWL +DLRDLE P    + D+++E      NG    Q+     VSQ  Y Q++ L G    N  V A      T +T K   EV        L+L LTDG+ + +G EY+      + +  G K  ++G    R  + LL  +N++ LGGE
Sbjct:   21 KVPPMWLEACVNWIQEENNN--ATLSQAQINKQVLEQWLLTDLRDLEHP---LLPDDILELPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVSAE-----TQSTPKPW-EV---RPSRMLMLQLTDGVTHIQGMEYQSIPALHSGLPPGTKILVRGCILFRLGVLLLKPENVKVLGGE 193
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Mouse
Match: Rmi1 (RecQ mediated genome instability 1 [Source:MGI Symbol;Acc:MGI:1921636])

HSP 1 Score: 87.4261 bits (215), Expect = 2.508e-18
Identity = 59/187 (31.55%), Postives = 93/187 (49.73%), Query Frame = 2 
Query:  116 QFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFTISDNVMEF-----NGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGE 661
            + P  W+EAC+ W+ +E+ N  +++S  +    + +QWL +DLRDLE P    + D+++E      NG    Q+     VSQ  Y Q++ L G    N  V A      T +T K   EV        L+L LTDG+ + +G EY+      + +  G K  ++G    R  + LL  +N++ LGGE
Sbjct:   21 KVPPMWLEACVNWIQEENNN--ATLSQAQINKQVLEQWLLTDLRDLEHP---LLPDDILELPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVSAE-----TQSTPKPW-EV---RPSRMLMLQLTDGVTHIQGMEYQSIPALHSGLPPGTKILVRGCILFRLGVLLLKPENVKVLGGE 193
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. UniProt/SwissProt
Match: sp|Q7ZVM9|RMI1_DANRE (RecQ-mediated genome instability protein 1 OS=Danio rerio OX=7955 GN=rmi1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.015e-19
Identity = 61/185 (32.97%), Postives = 87/185 (47.03%), Query Frame = 2 
Query:  113 FQFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFT-ISDNVMEFNGVMCC-QVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGE 661
             Q P  W++AC+ W+ +E     +S+   +    + +QWL +DLRDL  P L   IS+         CC Q+     VSQ  Y Q++ + GT   N  V A  +       AK             L+L LTDG+ N EG EYR     +  +  G K +L GP  +R  + LL  +NI+ LGGE
Sbjct:   19 IQVPPAWLDACVNWIKEEADR--ASIPQSQLNQRVLEQWLLTDLRDLAHPVLPERISEAQKTVLSNRCCVQMDSLLDVSQPAYNQLQRIRGTDCSNDQVSAVTQETQRPWEAKPTR---------MLMLQLTDGVQNLEGMEYRPIPALNANLPPGTKLQLVGPIAVRLGVLLLKAENIKVLGGE 192
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. UniProt/SwissProt
Match: sp|Q9D4G9|RMI1_MOUSE (RecQ-mediated genome instability protein 1 OS=Mus musculus OX=10090 GN=Rmi1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.755e-17
Identity = 59/187 (31.55%), Postives = 93/187 (49.73%), Query Frame = 2 
Query:  116 QFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFTISDNVMEF-----NGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGE 661
            + P  W+EAC+ W+ +E+ N  +++S  +    + +QWL +DLRDLE P    + D+++E      NG    Q+     VSQ  Y Q++ L G    N  V A      T +T K   EV        L+L LTDG+ + +G EY+      + +  G K  ++G    R  + LL  +N++ LGGE
Sbjct:   21 KVPPMWLEACVNWIQEENNN--ATLSQAQINKQVLEQWLLTDLRDLEHP---LLPDDILELPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVSAE-----TQSTPKPW-EV---RPSRMLMLQLTDGVTHIQGMEYQSIPALHSGLPPGTKILVRGCILFRLGVLLLKPENVKVLGGE 193
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. UniProt/SwissProt
Match: sp|Q9H9A7|RMI1_HUMAN (RecQ-mediated genome instability protein 1 OS=Homo sapiens OX=9606 GN=RMI1 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.110e-17
Identity = 60/198 (30.30%), Postives = 93/198 (46.97%), Query Frame = 2 
Query:  116 QFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFTISDNVME-----FNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGEYLDYIPNDYTH 694
            + P  W+EACI W+ +E+ N   ++S  +    + +QWL +DLRDLE P    + D ++E      NG    Q+     VSQ  Y Q++ L G    N  V A  +       AK             L+L LTDGI   +G EY+   +  + +  G K  + G  + R  + LL  +N++ LGGE +D +  +Y  
Sbjct:   21 KVPPMWLEACINWIQEENNN--VNLSQAQMNKQVFEQWLLTDLRDLEHP---LLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVTAEAQVTPKPWEAKPSR---------MLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFRLGVLLLKPENVKVLGGE-VDALLEEYAQ 203
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. UniProt/SwissProt
Match: sp|Q5ZHV8|RMI1_CHICK (RecQ-mediated genome instability protein 1 OS=Gallus gallus OX=9031 GN=RMI1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.406e-16
Identity = 63/222 (28.38%), Postives = 103/222 (46.40%), Query Frame = 2 
Query:  113 FQFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFTISDNVM-----EFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGEYLDYIPNDYTHLISNQSKLKRDMNNLESTNHIRE 763
             + P  W+EACI W+ +E  N   ++S  +    + +QWL +DLRDLE P    + D ++     E +G    Q+     VSQ  Y Q++ + G    N  V A  +       AK             L+L LTDGI+  +G EY+   +  + +  G K  + G    R  + LL  +N++ LGGE +D +  +Y    S +  L R +   E+ + +R+
Sbjct:   20 VKVPLTWLEACINWIQEE--NGGGNLSQAQISRQVFEQWLLTDLRDLEYP---ILPDGILDAPKGELSGFYSLQIDSLLDVSQPAYSQLQKIRGKSTVNEEVTANTQAFQKPWEAKPTR---------MLMLQLTDGIHQIQGMEYQPVPVLHSNLPPGTKITVHGNVAYRLGVLLLKPENVKLLGGE-VDALLEEY----SQERVLARLLGEAENPDSVRQ 222
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. UniProt/SwissProt
Match: sp|Q6DDH2|RMI1_XENLA (RecQ-mediated genome instability protein 1 OS=Xenopus laevis OX=8355 GN=rmi1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.334e-16
Identity = 59/196 (30.10%), Postives = 94/196 (47.96%), Query Frame = 2 
Query:  113 FQFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNL-FTISDNVM-EFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGEYLDYIPNDYTH 694
             + P  W+EACI W+ +E+ + +     +K    + +QWL +DLRDLE P L   I+D++  E NG    Q+     +S   Y Q++ L G  + N  V  T + +     AK             L+L LTDG  + +  EYR     +  +  G K  L+G    R  + LL  +N++ LGGE ++ +  +YT 
Sbjct:   21 VKVPDPWLEACINWIQEENGSSLLQAEINKQ---VFEQWLLTDLRDLEFPVLPANITDSLKCELNGFHAVQMDSLVDISLPAYSQLQKLKGKDSTNEQVTCTTQQSQKPWEAKPTR---------MLMLQLTDGTQHIQAMEYRPIQALNANLSPGTKMVLQGTIVCRLGVLLLKPENVKVLGGE-VEALVAEYTQ 203
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. TrEMBL
Match: A0A0S7HXG5 (RMI1 (Fragment) OS=Poeciliopsis prolifica OX=188132 GN=RMI1 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.688e-20
Identity = 65/190 (34.21%), Postives = 89/190 (46.84%), Query Frame = 2 
Query:  113 FQFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFT--ISDNVMEFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGEYLDYI 676
             Q P  W+EAC+EW+ Q    E   +S  +    +  QWL +DLRDL+ P L          E NG  C QV     VSQ  YGQ++   GT   N  V A      T TT +       +     LLL +TDG+ + E  EY+     S+A+  G K +L+G    R  + LL   N++ LGGE  D +
Sbjct:   22 VQVPFAWLEACVEWI-QGETGEAVHLSQQQINQQVLDQWLLTDLRDLDHPVLPEGLAQAQKTELNGTFCVQVDSLLDVSQPAYGQLQKWRGTDCANDEVSA-----FTQTTQRPWEAKATR----ILLLQITDGVQSLEAMEYQSIPALSSALRPGAKLQLQGKMVCRLGVVLLGPSNVKILGGEVEDLV 201
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. TrEMBL
Match: A0A3S2MW14 (DUF1767 domain-containing protein OS=Oryzias javanicus OX=123683 GN=OJAV_G00088660 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.215e-20
Identity = 60/189 (31.75%), Postives = 91/189 (48.15%), Query Frame = 2 
Query:  116 QFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFT--ISDNVMEFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGEYLDYI 676
            + P  W+EAC++W+ QE   E + +S  +   L+  QWL +DLRDL+ P L          + NG+ C QV  +  +SQ  YGQ++   GT   N  V A  +       AK+            +LL +TDG+ + E  EYR     S  +  G K +L+G    R  + LL   N++ LGGE  + +
Sbjct:   19 RVPFAWLEACVQWI-QEEAGEAAHLSQQQVNQLVLDQWLLTDLRDLDFPVLPEGLAQAQKTQLNGIFCVQVDSFLDISQPAYGQLQKWRGTDCANDEVSAVTQATQRPWEAKTTR---------MMLLQVTDGVQSLEAMEYRPIPALSATLRPGAKLQLQGQMVCRLGVLLLGPSNVKILGGEVEELV 197
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. TrEMBL
Match: A0A1S3JL04 (recQ-mediated genome instability protein 1 isoform X2 OS=Lingula unguis OX=7574 GN=LOC106173841 PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.332e-19
Identity = 66/214 (30.84%), Postives = 102/214 (47.66%), Query Frame = 2 
Query:  122 PQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLET---PNLFTISDNVMEFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGEYLDYIPNDYTHLISNQSKLKRDMNNLESTNH 754
            P  W++AC++W+ +EH+    S+S  +   L+ +QWL SDLRD+E    PN   IS    + NG  C QV     V  S+Y Q++ +TGT N N +V           T               L+L+LTDG  +  G EY+     S  +  G K  + GP T R  + +L+  N++ LGGE    +  +  H +  +  L  D++ +  T H
Sbjct:   24 PDDWLQACVDWIHEEHQQ--GSLSQSQVNDLVYEQWLVSDLRDIEATCLPN-NVISTQKTQLNGFYCLQVDSVLNVGSSFYSQLQRVTGTENANAAVD----------TDDQPRNFWEPKPSRMLMLSLTDGSQDVRGMEYKPIPQLSEHLRPGTKLLVSGPVTCRLGVLMLSASNVKVLGGEVDTLVEQNAQHQLLARV-LNVDISKIRPTEH 223
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. TrEMBL
Match: Q4SWR2 (Chromosome 12 SCAF13545, whole genome shotgun sequence (Fragment) OS=Tetraodon nigroviridis OX=99883 GN=GSTENG00011353001 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.853e-19
Identity = 64/190 (33.68%), Postives = 85/190 (44.74%), Query Frame = 2 
Query:  113 FQFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNL--FTISDNVMEFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGEYLDYI 676
             Q P  W+EAC+EWL QE       +S  +       QWL +DLRDL+ P L         +E NG  C QV     +SQ  Y Q++ L GT   N  V A  +       AK             LLL +TDG+ + E  EY+     S A+  G K +L G    R  + LL   N++ LGGE  D +
Sbjct:    9 IQVPFTWLEACVEWL-QEEAGGAGRLSQQQINQQAFDQWLLADLRDLDFPVLPEGIAQARKIELNGTYCVQVDSLLDISQPAYSQLQKLRGTDCANDEVSAVTQATQRPWEAKPSR---------MLLLQVTDGVQSLEAMEYQSIPALSTALRPGVKLQLNGNMVCRLGMLLLGPSNVKVLGGEVEDLV 188
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. TrEMBL
Match: A0A3B3E126 (RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) OS=Oryzias melastigma OX=30732 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.930e-19
Identity = 61/190 (32.11%), Postives = 91/190 (47.89%), Query Frame = 2 
Query:  113 FQFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFT--ISDNVMEFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGEYLDYI 676
             + P  W+EAC++WL QE   E + +S  +   L+  QWL +DLRDL+ P L          + NG+ C QV  +  +SQ  YGQ++   GT   N  V A  +       AK+            +LL +TDG+ + E  EYR     S  +  G K +L+G    R  + LL   N++ LGGE  + +
Sbjct:   18 VRVPFAWLEACVQWL-QEEAGEGARLSQQQVNQLVLDQWLLTDLRDLDFPVLPEGLAQAQKTQLNGIFCVQVDSFLDISQPAYGQLQKWRGTDCANDEVSAVTQATQRPWEAKTTR---------MMLLQVTDGVQSLEAMEYRPIPALSATLRPGAKLQLQGQMVCRLGVLLLGPSNVKILGGEVEELV 197
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Cavefish
Match: rmi1 (RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) [Source:NCBI gene;Acc:393149])

HSP 1 Score: 88.1965 bits (217), Expect = 9.099e-19
Identity = 69/220 (31.36%), Postives = 100/220 (45.45%), Query Frame = 2 
Query:  113 FQFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFT-ISD-NVMEFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGEYLDYIPNDYTHLISNQSKLKRDMNNLESTNHIREV 766
             Q PQ W+EAC+EW+ +E      ++   +    +  QWL +DLRDL  P L   IS+   ME NG  C Q+     VSQ  Y Q++ + G+   N  V A  +       AK             L+L LTDG+ + EG EYR     + ++  G K ++ G   +R  + LL  +N+  LGGE    +         +QSKL      L   NH +E 
Sbjct:   20 IQVPQTWLEACVEWVLEEAGG--VAVPQAQLNKQVLDQWLLTDLRDLAHPLLPACISEAQKMELNGCYCLQLDSLLDVSQPAYSQLQRVRGSDCTNEQVTAVTQATQKPWEAKPTR---------MLMLQLTDGVQSLEGMEYRPIPALNTSLPPGTKLQVAGTVVVRLGVLLLKAENVRVLGGEVEQLVER------HSQSKLLCRTLGLPEENHPQEA 222
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Nematostella
Match: EDO31902 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SWL0])

HSP 1 Score: 51.9878 bits (123), Expect = 2.218e-7
Identity = 36/138 (26.09%), Postives = 62/138 (44.93%), Query Frame = 2 
Query:  125 QGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFTISDNVMEFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYR 538
            QGW++ CI+++  +  N   S++  +   L+  ++L +DL+++   +L  I D VM   G  C Q+     V QS Y Q+  + G  +P +           L    +  E  VK     L   L+DG    +  EY+
Sbjct:   23 QGWLDECIDFI--KRTNSGRSITQHQLNQLVYDKFLLADLQEIGEASLPQIEDEVMMVEGTYCLQINSVINVGQSAYSQIMKIKGKDDPESH----------LDKKHTNWEPKVKASRM-LFFQLSDGGQQIQAMEYQ 147
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Nematostella
Match: EDO31900 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SWK8])

HSP 1 Score: 51.2174 bits (121), Expect = 3.763e-7
Identity = 26/93 (27.96%), Postives = 49/93 (52.69%), Query Frame = 2 
Query:  125 QGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFTISDNVMEFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSV 403
            QGW++ CI+++  +  N   S++  +   L+  ++L +DL+++   +L  I D VM   G  C Q+     V QS Y Q+  + G  +P + +
Sbjct:   23 QGWLDECIDFI--KRTNSGRSITQHQLNQLVYDKFLLADLQEIGEASLPQIKDEVMMVEGTYCLQINSVINVGQSAYSQIMKIKGKDDPESHL 113
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Medaka
Match: rmi1 (RecQ mediated genome instability 1 [Source:NCBI gene;Acc:101171749])

HSP 1 Score: 98.9821 bits (245), Expect = 2.715e-22
Identity = 60/190 (31.58%), Postives = 91/190 (47.89%), Query Frame = 2 
Query:  113 FQFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFT--ISDNVMEFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGEYLDYI 676
             + P  W+EAC++WL QE   E + +S  +   L+  QWL +DLRDL+ P L          + NG+ C QV  +  +SQ  YGQ++   GT   N  V A  +       AK+            +LL +TDG+ + E  EY+     S  +  G K +L+G    R  + LL   N++ LGGE  + +
Sbjct:   27 VRVPFAWLEACVQWL-QEEAGEAAHLSQQQVNQLVLDQWLLTDLRDLDYPVLPEGLAQAQKTQLNGIFCVQVDSFLDISQPAYGQLQKWRGTDCGNDEVSAVTQATQRPWEAKTTR---------MMLLQVTDGVQSLEAMEYQPIPALSATLRPGAKLQLQGQMVCRLGVLLLGPSNVKILGGEVEELV 206
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Planmine SMEST
Match: SMESG000052467.1 (SMESG000052467.1)

HSP 1 Score: 392.119 bits (1006), Expect = 3.216e-133
Identity = 199/202 (98.51%), Postives = 199/202 (98.51%), Query Frame = 2 
Query:   65 MENXXXXXXXXXXXXXFQFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFTISDNVMEFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGEYLD 670
            MENIISLSIKHLKSKSFQFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFTISDNVMEFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPF IRRRIALLAKQNIEFLGGE  D
Sbjct:    1 MENIISLSIKHLKSKSFQFPQGWVEACIEWLFQEHKNEISSMSNDKWCCLIEQQWLFSDLRDLETPNLFTISDNVMEFNGVMCCQVMGYRTVSQSYYGQVRDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGINNFEGYEYREWNLKSNAIVIGCKCRLKGPFKIRRRIALLAKQNIEFLGGEVED 202
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Planmine SMEST
Match: SMESG000052348.1 (SMESG000052348.1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.813e-25
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 2 
Query:  845 KEKLTLPLNDKRSADRTKDITVIIKTELELLWIQNHRRKYLESVYQALLTIQPTSVEYERAF 1030
            +EKLTLP+NDK++AD TKDI  IIKTELELL  QNHR KYLESVYQALLTIQ TSVE ERAF
Sbjct:   55 QEKLTLPVNDKQAADTTKDIKGIIKTELELLPKQNHRGKYLESVYQALLTIQQTSVESERAF 116
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Planmine SMEST
Match: SMESG000049212.1 (SMESG000049212.1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.131e-11
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 2 
Query:  878 RSADRTKDITVIIKTELELLWIQNHRRKYLESVYQALLTIQPTSVEYERAFSASGLFCTKIKSMLNDSTLDTFSF 1102
            + + R ++    ++ E+ L      +  YL+  Y  LL I+PT VE ER FSA+GL C+KI+S LND T+D   F
Sbjct:   36 KPSTRVENTLSKLQKEMPLFKSGGTKGDYLQKFYNFLLAIRPTIVESERVFSAAGLMCSKIRSRLNDITIDALCF 110
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Planmine SMEST
Match: SMESG000025944.1 (SMESG000025944.1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.952e-8
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:  881 SADRT-KDITVIIKTELELLWIQNHRRKYLESVYQALLTIQPTSVEYERAFSASGLFCTKIKSMLNDST 1084
            S  RT KD+T I+K EL +  +++ R   LES Y+ L +I  TSVE ER FS  G   TKI+S L+D +
Sbjct:  178 SKSRTAKDVTNIVKKELAIFEVESKRGANLESCYKNLNSITSTSVEPERVFSGCGKTVTKIRSSLSDES 246
[Close]
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Planmine SMEST
Match: SMESG000018705.1 (SMESG000018705.1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.542e-8
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 2 
Query:  914 IKTELELLWIQNHRRKYLESVYQALLTIQPTSVEYERAFSASGLFCTKIKSMLNDSTLDTFSF 1102
            I+ E+E  + +  + KYL  +   L T++PTSV  ERAFSASGL  +KI+SML+D +++   F
Sbjct:  116 IRAEVE--YYEGCKGKYLSIIECYLKTVRPTSVGAERAFSASGLLLSKIRSMLSDDSVNNLCF 176
The following BLAST results are available for this feature:
BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2
Match NameE-valueIdentityDescription
RMI12.354e-1831.02RecQ mediated genome instability 1 [Source:HGNC Sy... [more]
RMI14.395e-1830.30RecQ mediated genome instability 1 [Source:HGNC Sy... [more]
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BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rmi11.553e-1932.97RMI1, RecQ mediated genome instability 1, homolog ... [more]
rmi11.553e-1932.97RMI1, RecQ mediated genome instability 1, homolog ... [more]
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BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rmi19.961e-1832.31RecQ mediated genome instability 1 [Source:NCBI ge... [more]
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BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Rmi12.508e-1831.55RecQ mediated genome instability 1 [Source:MGI Sym... [more]
Rmi12.508e-1831.55RecQ mediated genome instability 1 [Source:MGI Sym... [more]
Rmi12.508e-1831.55RecQ mediated genome instability 1 [Source:MGI Sym... [more]
Rmi12.508e-1831.55RecQ mediated genome instability 1 [Source:MGI Sym... [more]
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BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q7ZVM9|RMI1_DANRE8.015e-1932.97RecQ-mediated genome instability protein 1 OS=Dani... [more]
sp|Q9D4G9|RMI1_MOUSE1.755e-1731.55RecQ-mediated genome instability protein 1 OS=Mus ... [more]
sp|Q9H9A7|RMI1_HUMAN2.110e-1730.30RecQ-mediated genome instability protein 1 OS=Homo... [more]
sp|Q5ZHV8|RMI1_CHICK1.406e-1628.38RecQ-mediated genome instability protein 1 OS=Gall... [more]
sp|Q6DDH2|RMI1_XENLA5.334e-1630.10RecQ-mediated genome instability protein 1 OS=Xeno... [more]
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BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0S7HXG51.688e-2034.21RMI1 (Fragment) OS=Poeciliopsis prolifica OX=18813... [more]
A0A3S2MW145.215e-2031.75DUF1767 domain-containing protein OS=Oryzias javan... [more]
A0A1S3JL041.332e-1930.84recQ-mediated genome instability protein 1 isoform... [more]
Q4SWR21.853e-1933.68Chromosome 12 SCAF13545, whole genome shotgun sequ... [more]
A0A3B3E1262.930e-1932.11RMI1, RecQ mediated genome instability 1, homolog ... [more]
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BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rmi19.099e-1931.36RMI1, RecQ mediated genome instability 1, homolog ... [more]
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BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO319022.218e-726.09Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO319003.763e-727.96Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rmi12.715e-2231.58RecQ mediated genome instability 1 [Source:NCBI ge... [more]
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BLAST of RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000052467.13.216e-13398.51SMESG000052467.1[more]
SMESG000052348.17.813e-2580.65SMESG000052348.1[more]
SMESG000049212.11.131e-1140.00SMESG000049212.1[more]
SMESG000025944.11.952e-846.38SMESG000025944.1[more]
SMESG000018705.12.542e-844.44SMESG000018705.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30024963 ID=SMED30024963|Name=RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)|organism=Schmidtea mediterranea sexual|type=transcript|length=1107bp
TGAAACAATACAGTAAGCAGACTTTCAGTTATTAACACTTTATTGTTTTT
GGCCATTTTTTATAATGGAAAATATTATCTCTCTTTCCATCAAACATTTG
AAATCTAAATCTTTTCAATTTCCCCAAGGTTGGGTTGAAGCTTGTATTGA
ATGGTTATTTCAAGAGCATAAGAATGAAATTTCTTCTATGTCAAATGATA
AATGGTGTTGTTTAATTGAACAACAATGGCTATTTTCTGATCTGAGAGAC
TTAGAAACGCCTAATTTATTCACAATATCAGACAATGTTATGGAATTCAA
TGGAGTAATGTGTTGTCAAGTAATGGGTTACAGAACGGTGTCACAATCTT
ACTATGGTCAGGTAAGAGATCTTACAGGAACTGTAAATCCAAATACATCC
GTCAAAGCTACCTGTGAGGGAGCCATCACATTAACGACAGCCAAATCTTG
TACAGAAGTGATAGTTAAGAATCAAGAGACATCATTGCTTCTTAATTTAA
CCGATGGAATTAATAATTTCGAAGGATATGAATATAGAGAATGGAATTTA
AAATCTAATGCCATTGTTATTGGCTGTAAGTGCCGACTGAAAGGCCCATT
TACAATTAGAAGAAGGATCGCATTATTAGCGAAGCAGAACATAGAGTTTC
TCGGTGGAGAGTATTTAGATTATATACCAAATGATTACACACATTTAATT
TCTAACCAATCAAAATTGAAAAGGGATATGAACAATCTCGAATCAACCAA
TCATATTAGAGAAGTGGTAGAAAATATTTTGAATTATTAAGACAAACTAA
TGAATTGCAACAAACTTTGTTGCTGAACCTGGTAACGTTTCCAAAAGGAA
AAACTAACTTTGCCACTTAATGATAAACGATCTGCAGATAGAACAAAAGA
CATCACAGTCATAATTAAGACAGAGCTGGAACTATTATGGATACAAAATC
ATAGACGAAAATATTTAGAATCTGTTTATCAGGCATTATTGACAATCCAA
CCAACTAGTGTAGAATACGAGAGAGCGTTCTCTGCATCTGGATTATTCTG
TACCAAAATAAAATCGATGCTTAATGACTCCACTTTGGACACGTTTTCCT
TTTAAAG
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protein sequence of SMED30024963-orf-1

>SMED30024963-orf-1 ID=SMED30024963-orf-1|Name=SMED30024963-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=242bp
MENIISLSIKHLKSKSFQFPQGWVEACIEWLFQEHKNEISSMSNDKWCCL
IEQQWLFSDLRDLETPNLFTISDNVMEFNGVMCCQVMGYRTVSQSYYGQV
RDLTGTVNPNTSVKATCEGAITLTTAKSCTEVIVKNQETSLLLNLTDGIN
NFEGYEYREWNLKSNAIVIGCKCRLKGPFTIRRRIALLAKQNIEFLGGEY
LDYIPNDYTHLISNQSKLKRDMNNLESTNHIREVVENILNY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR033472DUF1767
IPR013894RMI1_N
IPR008906HATC_C_dom
Vocabulary: molecular function
TermDefinition
GO:0046983protein dimerization activity
GO:0000166nucleotide binding