Coiled-coil domain containing 60
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30024952 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of Coiled-coil domain containing 60 vs. Ensembl Human
Match: CCDC60 (coiled-coil domain containing 60 [Source:HGNC Symbol;Acc:HGNC:28610]) HSP 1 Score: 68.1662 bits (165), Expect = 2.960e-11 Identity = 117/544 (21.51%), Postives = 223/544 (40.99%), Query Frame = 2 Query: 431 NLKKEINKSEMLTFNVRTGQHFFDILKKENEKKYMTDDKEEQQIIKDTPEIRPVIEDSDSESGSELQMS-DNREFSRPSTGINRKKLNIRPFTPIYSNISNLTGKTFIRPKSEYGYREGGTSSQMSLNPDSIEQ--ESFFRQLTSLQWLLEAM-INENVENMPRITLSWIVRKENNNLTSLK---NQKEIKVAWEKYITKSDQQSKHRATISAAVSTQATKISSTNQLSK-----TKETNEININ------TSIQLSKASSQEISVKEXXXXXX------------XXXXXXXPKSTV----GLQRRRMIAQVRSVCEEIEKDNNDYEYKKNLHLMRIGRF-----------PVDRK---RISESTKLQSQDQFSDKLQHMLYKHHDQSTQMIDDKLNNL--RDNVRNMAEYK-LIICSNKYKDIQTKGEFHQMLKNFRGKNTYQNFFKILDQSKNKIIYTNWFLSLEENLKTNFENKRIENALEKIRPFALNTITKLNRKRLFSVLTYLSDWEIRHPDISASIKFVTDHVVSVSEEDYQIWFR 1909 NLKK++ +S L +V+ G+ +F IL++E KK ++ + + + +P + S+ G L + D+ + + R RPFTPI+S I ++P E E FRQL +L WLLEA+ I+ M + W + + +++K K + WE +IT + + K + + + ++ ST LS+ + +++ I++N S+ SS++I E SS+ + + TV G+QR+ S+ ++++ ++ YK+ ++ PV +K R + + + + ++ Y ++ + DK+ L R R + +++ ++ SN KDI ++K + +F +L + L E+LK K+I L K++ F N ++ L VL L WE+ PDI+ +I+FV +H++ + +EDY W + Sbjct: 48 NLKKDLIRSRFLIQSVKIGRGYFAILREETAKKKKQQQLQKLKEEERN-KFQPAEKISEIHYGDTLLSTYDDEKLKTLGARVTR-----RPFTPIHSCI---------------------------ISPSLTEAHVEPLFRQLCALHWLLEALTIDHTHHTMKPVITCWNPKDPGGSKSTIKKINKDKSMGQKWEHFIT-APKTKKFKIPTMRVTNRKPSRRGSTLSLSRASGGSSPQSSMISVNPGSDEPPSVNTQVTSSKDIEDNESSSTKPDEEPLYMNLQKLLEMVREDARRTVTIENGMQRK-----APSILSVLKQNKSNSAYKEMQTTLKSSERSSSTSAESHIQPVQKKSKNRTNCDINIHYKSGVCNTMRAKFYSVAQEAGFCLQDKMEILMKRQEERGIQKFRAFVLVSNFQKDIAKMRHHISVVKGDAEEIADHWYFDLLSK-------------LPEDLKNFRPAKKI---LVKLQKFGENLDLRIRPHVLLKVLQDLRIWELCSPDIAVAIEFVREHIIHMPQEDYISWLQ 536
BLAST of Coiled-coil domain containing 60 vs. Ensembl Xenopus
Match: mrps9 (mitochondrial ribosomal protein S9 [Source:Xenbase;Acc:XB-GENE-995324]) HSP 1 Score: 101.679 bits (252), Expect = 9.753e-22 Identity = 150/658 (22.80%), Postives = 264/658 (40.12%), Query Frame = 2 Query: 80 SNASVKVQARNEYFINPIIPTREDVRKANYTRRENQLNFEGFYSKLWKPYICIGHP--LELDKCLEISDLSDHREQVKKPEDVE--VNKDKFVQIDTENNRASMSAQSLRKCSQKMEQLNK-NLKKEINKSEMLTFNVRTGQHFFDILKKENEKK-----------YMTDDKEEQQIIKDTPEIRPVIEDSDSESGSELQMSDNREFSRPSTGINRKKLNIRPFTPIYSNISNLTGKTFIRPKSEYGYREGGTSSQMSLNPDSIEQESFFRQLTSLQWLLEAMINENVENMPRITLSWIVRKENNNLTSLKNQKEIK------VAWE--------KYITKSDQQSKHRATISAAVSTQATKISSTNQLSK-TKETNEININTS-IQLSKASSQEISVKEXXXXXXXXXXXXXPKSTVGLQRRRMIAQVRSVCEEIEKDNNDYEYKKNLHLMRIGR-----FPV-----------DRKRISESTKLQSQDQFSDKLQHMLYKHHDQSTQMIDDKLNNLRDNVRNMAEYKLIICSNKYKDIQTKGEFHQMLKNFRGKNTYQNFFKILDQSKNKIIYTNWFLSLEENLKTN-FENKRIENALEKIRPFALNTITKLNRKRLFSVLTYLSDWEIRHPDISASIKFVTDHVVSVSEEDYQIWF 1906 S +K+QAR+ + + RE V +ANY RR+ QL+ +G+ S + KPY +G P LE K + S D +E + E +E +D + + ++ M+A + + +K N E + L VR G+ +F +L +E E K Y E Q + EI E +E +L +++ +E R + R RPFTPI+ ++ L+ F + E+ FRQL +L WLLE++ E + ++ W + K ++ S K+I + W+ K K+ +Q + +S +++ I S + L+ ++E +++S L A + E +V + P S + MIA E I+ D ++ E +KN L+R FPV R + S +T L + + K Q + + D ++ D D V + KY+ + + FHQ L+ R N + + + ++ NWF+ L + +N +I N + K+ ++ L L WE+ PD+S +I+FV +H++ + E+Y W Sbjct: 23 SQKGLKIQARSPTYYSCWEANREGVFRANYLRRQKQLSQQGYNSPINKPYEDLGQPLILEAKKFILHSLGQDEQEPKSEKEAIENYSAEDSNAESIPKISKGEMAASFGTTFYLRQRKKDKTNFNNEFQHTRQLMSRVRQGRGYFYLLHEEEEAKNRDLKEKQRFQYEKHRTEPQPPSYNVEEISEEDEAVTNEQADKLFLTEVKEKRRKESKSMR-----RPFTPIHHSL--LSSHIF-----------------------DADLETLFRQLCALHWLLESLTLEPSSAIRPVSSCWNLSKCSDAGGSKTPVKKITRENNADLKWDQLQAGKGKKMSQKTSRQCSASFRSISRISGRSSAIGSESSLTPNSEEMAAGGVSSSDCNLEGADAIESAVT-SVHGKLSKEADKEPLSEYLQKLIEMIA------ESIKADLDEEESQKNCTLLRAPSAQTEDFPVREDQQSNRILLQRPKSSPATTLYPSNLVTKKKQAVFSQMRDMFFEVAADADTIFHDKVEARERRCQEVNIQKYRSLDSMQNFHQDLEKMR------NAYHYVKEDRDYKDKNNWFVVLMSRIPQEMMKNHKIHNIVNKLEKLEEKLFVRIRPSAFLKFLEGLRTWELCSPDVSVAIEFVREHLIQMPLEEYTAWL 637
BLAST of Coiled-coil domain containing 60 vs. Ensembl Xenopus
Match: mrps9 (mitochondrial ribosomal protein S9 [Source:Xenbase;Acc:XB-GENE-995324]) HSP 1 Score: 67.0106 bits (162), Expect = 6.418e-11 Identity = 86/397 (21.66%), Postives = 160/397 (40.30%), Query Frame = 2 Query: 815 DSIEQESFFRQLTSLQWLLEAMINENVENMPRITLSWIVRKENNNLTSLKNQKEIK------VAWE--------KYITKSDQQSKHRATISAAVSTQATKISSTNQLSK-TKETNEININTS-IQLSKASSQEISVKEXXXXXXXXXXXXXPKSTVGLQRRRMIAQVRSVCEEIEKDNNDYEYKKNLHLMRIGR-----FPV-----------DRKRISESTKLQSQDQFSDKLQHMLYKHHDQSTQMIDDKLNNLRDNVRNMAEYKLIICSNKYKDIQTKGEFHQMLKNFRGKNTYQNFFKILDQSKNKIIYTNWFLSLEENLKTN-FENKRIENALEKIRPFALNTITKLNRKRLFSVLTYLSDWEIRHPDISASIKFVTDHVVSVSEEDYQIWF 1906 + ++E+ FRQL +L WLLE++ E + ++ W + K ++ S K+I + W+ K K+ +Q + +S +++ I S + L+ ++E +++S L A + E +V + P S + MIA E I+ D ++ E +KN L+R FPV R + S +T L + + K Q + + D ++ D D V + KY+ + + FHQ L+ R N + + + ++ NWF+ L + +N +I N + K+ ++ L L WE+ PD+S +I+FV +H++ + E+Y W Sbjct: 216 EQADKETLFRQLCALHWLLESLTLEPSSAIRPVSSCWNLSKCSDAGGSKTPVKKITRENNADLKWDQLQAGKGKKMSQKTSRQCSASFRSISRISGRSSAIGSESSLTPNSEEMAAGGVSSSDCNLEGADAIESAVT-SVHGKLSKEADKEPLSEYLQKLIEMIA------ESIKADLDEEESQKNCTLLRAPSAQTEDFPVREDQQSNRILLQRPKSSPATTLYPSNLVTKKKQAVFSQMRDMFFEVAADADTIFHDKVEARERRCQEVNIQKYRSLDSMQNFHQDLEKMR------NAYHYVKEDRDYKDKNNWFVVLMSRIPQEMMKNHKIHNIVNKLEKLEEKLFVRIRPSAFLKFLEGLRTWELCSPDVSVAIEFVREHLIQMPLEEYTAWL 599 HSP 2 Score: 50.447 bits (119), Expect = 8.644e-6 Identity = 45/155 (29.03%), Postives = 75/155 (48.39%), Query Frame = 2 Query: 80 SNASVKVQARNEYFINPIIPTREDVRKANYTRRENQLNFEGFYSKLWKPYICIGHP--LELDKCLEISDLSDHREQVKKPEDVE--VNKDKFVQIDTENNRASMSAQSLRKCSQKMEQLNK-NLKKEINKSEMLTFNVRTGQHFFDILKKENEKK 529 S +K+QAR+ + + RE V +ANY RR+ QL+ +G+ S + KPY +G P LE K + S D +E + E +E +D + + ++ M+A + + +K N E + L VR G+ +F +L +E E K Sbjct: 23 SQKGLKIQARSPTYYSCWEANREGVFRANYLRRQKQLSQQGYNSPINKPYEDLGQPLILEAKKFILHSLGQDEQEPKSEKEAIENYSAEDSNAESIPKISKGEMAASFGTTFYLRQRKKDKTNFNNEFQHTRQLMSRVRQGRGYFYLLHEEEEAK 177
BLAST of Coiled-coil domain containing 60 vs. Ensembl Mouse
Match: Ccdc60 (coiled-coil domain containing 60 [Source:MGI Symbol;Acc:MGI:2141043]) HSP 1 Score: 51.2174 bits (121), Expect = 3.333e-6 Identity = 55/230 (23.91%), Postives = 100/230 (43.48%), Query Frame = 2 Query: 431 NLKKEINKSEMLTFNVRTGQHFFDILKKENEKKYMTDDKEEQQIIKDTPEIRPVIEDSDSESGSELQMS-DNREFSRPSTGINRKKLNIRPFTPIYSNISNLTGKTFIRPKSEYGYREGGTSSQMSLNPDSIEQESFFRQLTSLQWLLEAM-INENVENMPRITLSWIVRKENNNLTSLK---NQKEIKVAWEKYITKS-DQQSKHRATISAAVSTQATKISSTNQLSKT 1102 NLKK++ +S L V+ G+ +F+IL++EN K ++ + + + +P + SD L + D + + GI IRPFTPI+S + M+ + + FRQL +L WLLEA+ I+ M + W + + +++K K + W+ ++T ++ K A +A S + ++ ST L++T Sbjct: 49 NLKKDLMRSRFLIQCVKIGRGYFNILREENAMKKKQQLLQKLKEEELN-KFQPAKKFSDIHCRDNLLATYDCEKLKKLEAGI-----IIRPFTPIHSCL-------------------------MAPSLPESHVDPLFRQLCALHWLLEALTIDHTHHTMRPLIACWNPKDPGGSKSTIKKINKDKSMGQRWDHFVTAPKTKKYKAPAIRTAMASRKPSRRGSTLSLTRT 247 HSP 2 Score: 50.447 bits (119), Expect = 6.311e-6 Identity = 26/87 (29.89%), Postives = 46/87 (52.87%), Query Frame = 2 Query: 1652 IYTNWFLSLEENLKTNFENKR-IENALEKIRPFALNTITKLNRKRLFSVLTYLSDWEIRHPDISASIKFVTDHVVSVSEEDYQIWFR 1909 I +W+ L L + ++ R + L K++ F N ++ L VL L WE+ PDI+ +I+FV +H++ + +EDY W + Sbjct: 445 IADHWYFDLLSKLPEDLKSFRPAKKILMKLQKFGENLDLRIRPHVLLKVLQDLRIWELCSPDIAVAIEFVREHIIHMPQEDYINWLQ 531
BLAST of Coiled-coil domain containing 60 vs. UniProt/SwissProt
Match: sp|Q8IWA6|CCD60_HUMAN (Coiled-coil domain-containing protein 60 OS=Homo sapiens OX=9606 GN=CCDC60 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 1.422e-10 Identity = 117/544 (21.51%), Postives = 223/544 (40.99%), Query Frame = 2 Query: 431 NLKKEINKSEMLTFNVRTGQHFFDILKKENEKKYMTDDKEEQQIIKDTPEIRPVIEDSDSESGSELQMS-DNREFSRPSTGINRKKLNIRPFTPIYSNISNLTGKTFIRPKSEYGYREGGTSSQMSLNPDSIEQ--ESFFRQLTSLQWLLEAM-INENVENMPRITLSWIVRKENNNLTSLK---NQKEIKVAWEKYITKSDQQSKHRATISAAVSTQATKISSTNQLSK-----TKETNEININ------TSIQLSKASSQEISVKEXXXXXX------------XXXXXXXPKSTV----GLQRRRMIAQVRSVCEEIEKDNNDYEYKKNLHLMRIGRF-----------PVDRK---RISESTKLQSQDQFSDKLQHMLYKHHDQSTQMIDDKLNNL--RDNVRNMAEYK-LIICSNKYKDIQTKGEFHQMLKNFRGKNTYQNFFKILDQSKNKIIYTNWFLSLEENLKTNFENKRIENALEKIRPFALNTITKLNRKRLFSVLTYLSDWEIRHPDISASIKFVTDHVVSVSEEDYQIWFR 1909 NLKK++ +S L +V+ G+ +F IL++E KK ++ + + + +P + S+ G L + D+ + + R RPFTPI+S I ++P E E FRQL +L WLLEA+ I+ M + W + + +++K K + WE +IT + + K + + + ++ ST LS+ + +++ I++N S+ SS++I E SS+ + + TV G+QR+ S+ ++++ ++ YK+ ++ PV +K R + + + + ++ Y ++ + DK+ L R R + +++ ++ SN KDI ++K + +F +L + L E+LK K+I L K++ F N ++ L VL L WE+ PDI+ +I+FV +H++ + +EDY W + Sbjct: 48 NLKKDLIRSRFLIQSVKIGRGYFAILREETAKKKKQQQLQKLKEEERN-KFQPAEKISEIHYGDTLLSTYDDEKLKTLGARVTR-----RPFTPIHSCI---------------------------ISPSLTEAHVEPLFRQLCALHWLLEALTIDHTHHTMKPVITCWNPKDPGGSKSTIKKINKDKSMGQKWEHFIT-APKTKKFKIPTMRVTNRKPSRRGSTLSLSRASGGSSPQSSMISVNPGSDEPPSVNTQVTSSKDIEDNESSSTKPDEEPLYMNLQKLLEMVREDARRTVTIENGMQRK-----APSILSVLKQNKSNSAYKEMQTTLKSSERSSSTSAESHIQPVQKKSKNRTNCDINIHYKSGVCNTMRAKFYSVAQEAGFCLQDKMEILMKRQEERGIQKFRAFVLVSNFQKDIAKMRHHISVVKGDAEEIADHWYFDLLSK-------------LPEDLKNFRPAKKI---LVKLQKFGENLDLRIRPHVLLKVLQDLRIWELCSPDIAVAIEFVREHIIHMPQEDYISWLQ 536
BLAST of Coiled-coil domain containing 60 vs. TrEMBL
Match: A0A1L8I1A5 (Uncharacterized protein OS=Xenopus laevis OX=8355 GN=XELAEV_18007907mg PE=4 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 7.333e-21 Identity = 146/663 (22.02%), Postives = 277/663 (41.78%), Query Frame = 2 Query: 80 SNASVKVQARNEYFINPIIPTREDVRKANYTRRENQLNFEGFYSKLWKPYICIGHPLELD-KCLEISDLSDHREQVKKPED-VE--VNKDKFVQIDTENNRASMSAQSLRKCSQKMEQLNK-NLKKEINKSEMLTFNVRTGQHFFDILKKENE-KKYMTDDKEEQQIIKDTPEIRPVIEDSDSESGSELQMSDNREFSRPSTGINRK-----KLNIRPFTPIYSNISNLTGKTFIRPKSEYGYREGGTSSQMSLNPDSIEQESFFRQLTSLQWLLEAMINENVENMPRITLSWIVRKENNNLTSLKN---QKEIKVAWEKY-----ITKSDQQSKHRAT---ISAA------VSTQATKISSTNQLSKTKETNEININTSIQLS-KASSQEISVKEXXXXXXXXXXXXXPKSTVGLQRRRMIAQVRSVCEEIEKDNNDYEYKKNLHLMRI-----------------GRFPVDRKRISESTKLQSQDQFSDK-------LQHMLYKHHDQSTQMIDDKLNNLRDNVRNMAEYKLIICSNKYKDIQTKGEFHQMLKNFRGKNTYQNFFKILDQSKNKIIYTNWFLSLEENLKTN-FENKRIENALEKIRPFALNTITKLNRKRLFSVLTYLSDWEIRHPDISASIKFVTDHVVSVSEEDYQIWF 1906 S +K+QAR+ + + P RE + +ANY R++ QL+ +G+ S KPY +G PL L+ K L + L ++ K +D +E +++D + + ++ M+A + + +K N E + L VR G+ +F IL +E E KK+ +K+ Q K+ E +P + S E ++++ R + T + K K RPFTPI++++ +S + ++ ES FRQL +L WLLE++ E + ++ W + + +K + + + W++ K++Q T SA+ +S +++ I S + L E + +S+ + + + S + P S + MIA E ++ D ++ E +K L+R R + R + S +T L + + K +++M ++ ++ + DK+ R+ R + KY+ + FHQ L+ R N + + + K+ NWF+ L + + +N +I N ++K+ ++ L+ L WE+ PDIS +I+FV +H++ + EDY W Sbjct: 23 SQKGLKIQARSPTYYSCWEPNREALFRANYLRQQKQLSQQGYNSPNNKPYEDLGQPLILEAKKLILHSLGQDEQETKSEKDEIENSISEDSNAEAIPKISKGEMAASLGTTVYLRQRKKDKINFNNEFQHTRQLISRVRQGRGYFYILHEEEERKKWDLQEKQRLQYEKNRTEPQPPSYHVEESSNEEDKITNERADNLFLTEVKEKRRKENKATRRPFTPIHNSL-------------------------LSSHIIDVDLESLFRQLCALHWLLESLTLEPSSAIRPVSSCWNLSDPGGSKAPVKKITRENNLDLKWDQLSLPGKAKKTNQNHPFNPTRRQCSASLRTISRISGRSSAIGSMSSLIPNSEEMAVGGTSSLDANLEGADVTASGANSVHGKLSKEADEEPLSEYMQKLIEMIA------ESVKMDLDEEERQKECTLLRAPMVAQIDVPLLREDQQSNRILLHRPKSSPATTLYPSNLVTKKKPIVFSEMRNMFFEVAAEADTIFHDKV-EARERRRQEVNIQ------KYQSLDKMQNFHQDLEKMR------NAYHYVKEDKDHKDKNNWFVVLMSRIPQDAMKNHKIRNIMDKLEKLEEKLFVRIRPNAFLRFLSGLRTWELCSPDISVAIEFVREHLIQMPLEDYTAWL 641
BLAST of Coiled-coil domain containing 60 vs. TrEMBL
Match: A0A267DIW0 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig003796g3 PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 8.404e-20 Identity = 113/406 (27.83%), Postives = 190/406 (46.80%), Query Frame = 2 Query: 80 SNASVKVQARNEYFINPIIPTREDVRKANYTRRENQLNFEGFYSKLWKPYICIGHPLEL-DKCLEISDLSDHREQVKKPEDVEVNKDKFVQIDTENNRASMSAQSLRKCSQKMEQLNKNLKKEINKSEMLTFNVRTGQHFFDILKKENEKKYMTDDKEEQ-QIIKDTPEIRPVIE------DSDSESGSEL----------QMSDNREFSRP--STGINRKKLNIRPFTPIYSNISNLTGKTFIRPKSEYGYREGGTSSQMSLNPDSIEQ----ESFFRQLTSLQWLLEAMINENVENMPRITLSWIVRKENNNLTSLKNQK---EIKVAWEKYITKSDQQSKHRATISAAVSTQATKI------------SSTNQLSKTKETNEININTSIQLSKASSQEISVKE 1180 S+ VK++AR +P PTR+ VR NY+RR QL+ +GF + WKPY CIG + L D+ L +S L K+PE V+ + + + E+ A SL S+K ++ +LK E+ KSE + + G+ +F+ L++E EK+ + +Q + ++ E RP E D D E + + D R+ SR ++ RP+TP+++NI G+ P S S + D+ EQ ES F+QL +L WLLEAM+ E+ M I+ SW ++ S ++++ +K W+ ++ + +HR I + ++T+I S+ ++ S + + S S+ASS +SV+E Sbjct: 38 SHVGVKMRARTAQLYDPSEPTRDQVRHQNYSRRYRQLSSQGFRTPAWKPYECIGEEVCLDDRQLILSTLGQ-----KEPERVQAPEAEDGK--AEDKVAKHVNPSLFIASRKAVKV--DLKAELQKSEGIRKRMNIGKSYFEYLQQEKEKRVAEKIRLDQLERLRARTEARPPPETEESTDDEDKEDFAAVNSVHLECFRSAAPDPRQSSRSRQDCRRKKRTRPPRPYTPLHANI----GEHPDEP------------SWCSTHEDAGEQPEFLESLFKQLCALHWLLEAMLQEDPTLMNPISSSWSLKNIGGTWVSARDKERSTAVKKEWDSLVSG---RGRHR--IGGLAARRSTRIWSSMRTDLTNRSSARSRASTAGSGADGGLGESRATSRASS--VSVEE 411
BLAST of Coiled-coil domain containing 60 vs. TrEMBL
Match: W5M5U2 (Coiled-coil domain containing 60 OS=Lepisosteus oculatus OX=7918 GN=CCDC60 PE=4 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 8.632e-20 Identity = 96/374 (25.67%), Postives = 167/374 (44.65%), Query Frame = 2 Query: 86 ASVKVQARNEYFINPIIPTREDVRKANYTRRENQLNFEGFYSKLWKPYICIGHPLELDKCLEISDLSDHREQVKKPEDVEVNKD----KF--VQIDTENNRASMSAQSLRKCSQKMEQLNKNLKKEINKSEMLTFNVRTGQHFFDILKKENEKKYMTDDKEEQQIIK-----DTPEIRPVIEDSDSESGSE--LQMSDNREFSRPSTGINRKKLNIRPFTPIYSNISNLTGKTFIRPKSEYGYREGGTSSQMSLNPDSIEQESFFRQLTSLQWLLEAMINENVENMPRITLSWIVRKENNNLTSLKN---QKEIKVAWEKYITKS-DQQSKHRATISAAVSTQATKISSTNQLSKTKETNEININTSIQLSKAS 1156 A +K+QAR+ NP P RE V + NY RR+ QL +G+ + W+PY IG PL L+ I EQ+ K E K+ F Q+D+ ++ ++ L +K + L++ + ++ L V+ GQ +F IL+KE + +E+Q++ + P E S+S+ +E + + E S+ R+ RPFTP++ ++ TS Q P QE+ FRQL L WLLEA+ E + M + W ++ + T +K +K I++ W+++IT+S ++ R +V + T ++ LS+ + ++ L+ S Sbjct: 26 AGIKLQARSSTVFNPCEPNREQVFRENYRRRQKQLTRQGYRAVNWRPYEEIGEPLVLEPKRLILHSLGQPEQICKDEPSGGPKEDQESAFNKAQLDSAEESKNVPSRVLP--IEKTGDDGRALRRHLTRTRCLVSAVKQGQGYFHILQKEAQDLQKAHLEEQQRLAELRRSACKPPSFSTEEGSESDETTEGFFRTALPAEHSQLYKKHARRASPARPFTPLHCSL---------------------TSPQ----PSEASQETIFRQLCCLNWLLEALTLEPLGRMGPVFSCWDIKDPGRSKTMIKTLNKEKAIEIKWDQFITQSKSKKPPSRVLRKLSVKPRKTSFLGSSCLSEVSSAVTPTMGSASSLAPGS 372
BLAST of Coiled-coil domain containing 60 vs. TrEMBL
Match: V4B778 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_237703 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 8.981e-20 Identity = 116/420 (27.62%), Postives = 189/420 (45.00%), Query Frame = 2 Query: 80 SNASVKVQARNEYFINPIIPTREDVRKANYTRRENQLNFEGFYSKLWKPYICIGHPLELD-KCLEISDLSD-HREQVKKPEDVEVNKDKFVQIDTENNRASMSAQSLRKCSQKMEQLNKNLKKEINKSEMLTFNVRTGQHFFDILKKENEKK-------YMTDDKEEQQIIK-------------DTPEIRPVIEDSDSESGSE------LQMSDNREFSRPSTGIN---RKKLNI--RPFTPIYSNISNLTGKTF---------IRPKSEYGYREGGTSSQMSLNPDS-------------IEQESFFRQLTSLQWLLEAMINENVENMPRITLSWIVRKEN--NNLTS---LKNQKEIKVAWEKYITKSDQQSKHRATISAAVSTQATKISSTNQLSKTKETNEININTSIQLSKASS 1159 S +K+QAR + NPI P+R+ VR ANY RR+ QL +GF + ++PY+ IG P LD K L +S L ++ +++ + S + LR+ K +LN NL KE+ L NV+ G FD++K+E + K Y +E + + D P+ + DS SG E Q + + SRP++ + +KK NI RPFTP Y+++S +T T + P + S + ++PDS + ++S FRQL L W+LEAM E M IT W + K + N S ++NQK + W++++T + +K + + +S Q + + S + + I++NT+ Q S + S Sbjct: 19 SQKGLKLQARCDTVYNPIHPSRDIVRSANYRRRQEQLVTQGFNALNYRPYVGIGDPFYLDEKRLVLSALGQWEESDESCYSSSSDEDERGLEVTKQKKSNSAANFMLRR---KKRELN-NLNKEVRHGRNLIRNVKLGHGLFDLIKQERQAKKAAIAEAYRKKAEEARNAWQQPKSDSSSDESENDIPQDTEL--DSSYFSGGEQDSIFLTQPNTPGDGSRPNSSKSTPRKKKKNIPPRPFTPKYTSLSEVTDHTADFEANITSSLNPSRDVS---PDNRSVVPIDPDSMNTAVDNSVISFDVSRDSLFRQLCVLNWILEAMNIEQGCTMSSITTCWKLSKSDMGGNKVSKGRIQNQKTAQTKWDQFVTNTGAHAK--ISKRSRLSRQYNRRVQLTRTSLSPSNSSIHLNTTNQSSVSHS 427
BLAST of Coiled-coil domain containing 60 vs. TrEMBL
Match: A0A1I8JBM8 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.682e-19 Identity = 115/407 (28.26%), Postives = 189/407 (46.44%), Query Frame = 2 Query: 80 SNASVKVQARNEYFINPIIPTREDVRKANYTRRENQLNFEGFYSKLWKPYICIGHPLEL-DKCLEISDLSD-HREQVKKPEDVEVNKDKFVQIDTENNRASMSAQSLRKCSQKMEQLNKNLKKEINKSEMLTFNVRTGQHFFDILKKENEKKYMTDDKEEQ-QIIKDTPEIRPVIE------DSDSESGSEL----------QMSDNREFSRP--STGINRKKLNIRPFTPIYSNISNLTGKTFIRPKSEYGYREGGTSSQMSLNPDSIEQ----ESFFRQLTSLQWLLEAMINENVENMPRITLSWIVRKENNNLTSLKNQK---EIKVAWEKYITKSDQQSKHRATISAAVSTQATKI------------SSTNQLSKTKETNEININTSIQLSKASSQEISVKE 1180 S+ VK++AR +P PTR+ VR NY+RR QL+ +GF + WKPY CIG + L D+ L +S L E+V+ PE E K E+ A SL S+K ++ +LK E+ KSE + + G+ +F+ L++E EK+ + +Q + ++ E RP E D D E + + D R+ SR ++ RP+TP+++NI G+ P S S + D+ EQ ES F+QL +L WLLEAM+ E+ M I+ SW ++ S ++++ +K W+ ++ + +HR I + ++T+I S+ ++ S + + S S+ASS +SV+E Sbjct: 32 SHVGVKMRARTAQLYDPSEPTRDQVRHQNYSRRYRQLSSQGFRTPAWKPYECIGEEVCLDDRQLILSTLGQKEPERVQAPE-AEDGK-------AEDKVAKHVNPSLFIASRKAVKV--DLKAELQKSEGIRKRMNIGKSYFEYLQQEKEKRVAEKIRLDQLERLRARTEARPPPETEESTDDEDKEDFAAVNSVHLECFRSAAPDPRQSSRSRQDCRRKKRTRPPRPYTPLHANI----GEHPDEP------------SWCSTHEDAGEQPEFLESLFKQLCALHWLLEAMLQEDPTLMNPISSSWSLKNIGGTWVSARDKERSTAVKKEWDSLVSG---RGRHR--IGGLAARRSTRIWSSMRTDLTNRSSARSRASTAGSGADGGLGESRATSRASS--VSVEE 405
BLAST of Coiled-coil domain containing 60 vs. Ensembl Nematostella
Match: EDO45458 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RSQ3]) HSP 1 Score: 60.077 bits (144), Expect = 2.620e-9 Identity = 39/118 (33.05%), Postives = 57/118 (48.31%), Query Frame = 2 Query: 1604 TYQNFFKILDQSK-NKIIYTN---------------WFLSLEENLKTNFENKRIEN-ALEKIRPFALNTITKLNRKRLFSVLTYLSDWEIRHPDISASIKFVTDHVVSVSEEDYQIWF 1906 T+ N +K LDQ + N +I N W+ L +NL +N N L KI + K + + VL+ L WEI PDISA+++FV + VV +SE +Y+ WF Sbjct: 705 TFNNMYKALDQMRSNSVIPDNETSEEMRQRVSEECKWYKDLNDNLPPEVKNDMYCNLVLNKIASYGSLEGRKASSSQFLKVLSTLRMWEICAPDISAALEFVREKVVGMSEIEYEDWF 822 HSP 2 Score: 53.9138 bits (128), Expect = 1.914e-7 Identity = 53/190 (27.89%), Postives = 97/190 (51.05%), Query Frame = 2 Query: 80 SNASVKVQARNEYFINPIIPTREDVRKANYTRRENQLNFEGFYSKLWKPYICIGHPLELDKCLEISDLSDH-REQVKKPED---VEVNKDKFVQIDT-ENNRASMSAQS-------LRKCSQKMEQLNKNLKKEINKSEMLTFNVRTGQHFFDILKKENEKKYMTDDKEEQQIIKDTP--EIRPVIEDSD 607 S+ +K+ AR+ +PTR +V + NY RR++Q+ G+ S ++KPY +G DK L +S L EQV + +D + + +I T +N+R+ +++ + + K E +N +++ ++NK + VR G + ++K E EKK D EEQ+ ++ E++P DS+ Sbjct: 20 SHQGLKITARSARVYTCEVPTRREVARENYERRKHQMTKCGYRSVIYKPYQSVGEVFLNDKKLILSALGQQASEQVTQFQDNSSSSSSDSEDDEIRTFKNSRSPTKSKADHQKPVVPQATAYKPEVIN-DIRVQVNKGRKMVNAVRLGFGLYRLVKDEQEKKQAKAD-EEQRKKEEAARREMKPPTSDSE 207
BLAST of Coiled-coil domain containing 60 vs. Planmine SMEST
Match: SMESG000038986.1 (SMESG000038986.1) HSP 1 Score: 1226.85 bits (3173), Expect = 0.000e+0 Identity = 610/611 (99.84%), Postives = 610/611 (99.84%), Query Frame = 2 Query: 77 MSNASVKVQARNEYFINPIIPTREDVRKANYTRRENQLNFEGFYSKLWKPYICIGHPLELDKCLEISDLSDHREQVKKPEDVEVNKDKFVQIDTENNRASMSAQSLRKCSQKMEQLNKNLKKEINKSEMLTFNVRTGQHFFDILKKENEKKYMTDDKEEQQIIKDTPEIRPVIEDSDSESGSELQMSDNREFSRPSTGINRKKLNIRPFTPIYSNISNLTGKTFIRPKSEYGYREGGTSSQMSLNPDSIEQESFFRQLTSLQWLLEAMINENVENMPRITLSWIVRKENNNLTSLKNQKEIKVAWEKYITKSDQQSKHRATISAAVSTQATKISSTNQLSKTKETNEININTSIQLSKASSQEISVKEXXXXXXXXXXXXXPKSTVGLQRRRMIAQVRSVCEEIEKDNNDYEYKKNLHLMRIGRFPVDRKRISESTKLQSQDQFSDKLQHMLYKHHDQSTQMIDDKLNNLRDNVRNMAEYKLIICSNKYKDIQTKGEFHQMLKNFRGKNTYQNFFKILDQSKNKIIYTNWFLSLEENLKTNFENKRIENALEKIRPFALNTITKLNRKRLFSVLTYLSDWEIRHPDISASIKFVTDHVVSVSEEDYQIWFR 1909 MSNASVKVQARNEYFINPIIPTREDVRKANYTRRENQLNFEGFYSKLWKPYICIGHPLELDKCLEISDLSDHREQVKKPEDVEVNKDKFVQIDTENNRASMSAQSLRKCSQKMEQLNKNLKKEINKSEMLTFNVRTGQHFFDILKKENEKKYMTDDKEEQQIIKDTPEIRPVIEDSDSESGSELQMSDNREFSRPSTGINRKKLNIRPFTPIYSNISNLTGKTFIRPKSEYGYREGGTSSQMSLNPDSIEQESFFRQLTSLQWLLEAMINENVENMPRITLSWIVRKENNNLTSLKNQKEIKVAWEKYITKSDQQSKHRATISAAVSTQATKISSTNQLSKTKETNEININTSIQLSKASSQEISVKEISSSHRGN SSSRPKSTVGLQRRRMIAQVRSVCEEIEKDNNDYEYKKNLHLMRIGRFPVDRKRISESTKLQSQDQFSDKLQHMLYKHHDQSTQMIDDKLNNLRDNVRNMAEYKLIICSNKYKDIQTKGEFHQMLKNFRGKNTYQNFFKILDQSKNKIIYTNWFLSLEENLKTNFENKRIENALEKIRPFALNTITKLNRKRLFSVLTYLSDWEIRHPDISASIKFVTDHVVSVSEEDYQIWFR Sbjct: 1 MSNASVKVQARNEYFINPIIPTREDVRKANYTRRENQLNFEGFYSKLWKPYICIGHPLELDKCLEISDLSDHREQVKKPEDVEVNKDKFVQIDTENNRASMSAQSLRKCSQKMEQLNKNLKKEINKSEMLTFNVRTGQHFFDILKKENEKKYMTDDKEEQQIIKDTPEIRPVIEDSDSESGSELQMSDNREFSRPSTGINRKKLNIRPFTPIYSNISNLTGKTFIRPKSEYGYREGGTSSQMSLNPDSIEQESFFRQLTSLQWLLEAMINENVENMPRITLSWIVRKENNNLTSLKNQKEIKVAWEKYITKSDQQSKHRATISAAVSTQATKISSTNQLSKTKETNEININTSIQLSKASSQEISVKEISSSHRGNSSSSRPKSTVGLQRRRMIAQVRSVCEEIEKDNNDYEYKKNLHLMRIGRFPVDRKRISESTKLQSQDQFSDKLQHMLYKHHDQSTQMIDDKLNNLRDNVRNMAEYKLIICSNKYKDIQTKGEFHQMLKNFRGKNTYQNFFKILDQSKNKIIYTNWFLSLEENLKTNFENKRIENALEKIRPFALNTITKLNRKRLFSVLTYLSDWEIRHPDISASIKFVTDHVVSVSEEDYQIWFR 611 The following BLAST results are available for this feature:
BLAST of Coiled-coil domain containing 60 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of Coiled-coil domain containing 60 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Coiled-coil domain containing 60 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Coiled-coil domain containing 60 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Coiled-coil domain containing 60 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of Coiled-coil domain containing 60 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of Coiled-coil domain containing 60 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of Coiled-coil domain containing 60 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Coiled-coil domain containing 60 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Coiled-coil domain containing 60 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Coiled-coil domain containing 60 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Coiled-coil domain containing 60 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Coiled-coil domain containing 60 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Coiled-coil domain containing 60 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30024952 ID=SMED30024952|Name=Coiled-coil domain containing 60|organism=Schmidtea mediterranea sexual|type=transcript|length=2026bpback to top protein sequence of SMED30024952-orf-1 >SMED30024952-orf-1 ID=SMED30024952-orf-1|Name=SMED30024952-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=616bp MSNASVKVQARNEYFINPIIPTREDVRKANYTRRENQLNFEGFYSKLWKPback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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