SMED30024899

Overview
NameSMED30024899
Smed IDSMED30024899
Length (bp)1548
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30024899 (SMED30024899) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30024899 (SMED30024899) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30024899

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
headSMED30024899SMESG000016790.1 SmedASXL_004246SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
parenchymal cellSMED30024899SMESG000016790.1 dd_Smed_v4_10653_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
headSMED30024899SMESG000016790.1 dd_Smed_v6_10653_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
epidermisSMED30024899SMESG000016790.1 dd_Smed_v4_10653_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30024899 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.002808:46801..48345 -7554
Homology
BLAST of SMED30024899 vs. Planmine SMEST
Match: SMESG000016790.1 (SMESG000016790.1)

HSP 1 Score: 853.203 bits (2203), Expect = 0.000e+0
Identity = 454/465 (97.63%), Postives = 459/465 (98.71%), Query Frame = 3
Query:  108 MGPIYNSRYFTRELLYRITGIVFVFILGLGIMSVYFYYSIRMIPSSAKVLWKIYNYGISGFELLNILLIYVCLNVNYRYRNLRMTRIIEQPLIFYLICLPFLILTMNISIFLMIIMFFHSHLLENGLAVNLLMXXXXXXXXXXXXXXXXGFKDTGEEWNMNFINVFTISSVAMSIFFHFNYSVIFLETANFRLFISPVINSSFEMSPIFGKMPIILGQSIMILFVVLNPYFYIYLKNNLQHILKHRYRQISGTNQSILHNKHRVLIFGSILPISALTMTVVIRFYPGNQQNSIDVVRIVSEILKMFLILVIMPEWRVEKLPSQKTFHKIINIXXXXXXXXVCVKFMSALVKYVMFVLDGHSGGRGFFIFSIDIVKLLELFSQTCFLSLSIDRTPGNCKRPFWWFLFFNCIMLFVSNFGDLIEEVIETVSDHELSNSTLRLLLGGLSAIYKPPILLYYLISSVMIQ 1502
            MGPIYNSRYFTRELLYRITGIVFVFILGLGIMSVYFYYSIRMIPSSAKVLWKIYNYGISGFELLNILLIYVCLNVNYRYRNLRMTRIIEQPLIFYLICLPFLILTMNISIFLMIIMFFHS+LLENGLAVNLLMLSITFFILII+IINTSGF DTGEEWNMNFINVFTISSVAMSIFFHFNYSV +LETANFRLFISPVINSSFEMSPI GKMPIILGQSIMILFVVLNPYFYIYLKNNLQHILKHRYRQISGTNQSILHNKHRVLIFGSILPISALTMTVVIRFYPGNQQNSIDVVRIVSEILKMFLILVIMPEWRVEKLPS K FHKIINIFLFFGLFGVCVKFMSALVKYVMFVLDGHSGGRG FIFSIDIVKLLELFSQTCFLSLSIDRTPGNCKRPFWWFLFFNCIMLFVSNFGDLIEEVIETVSDHELSNSTLRLLLGGLSAI+KPP+LLYYLISSVMIQ
Sbjct:    1 MGPIYNSRYFTRELLYRITGIVFVFILGLGIMSVYFYYSIRMIPSSAKVLWKIYNYGISGFELLNILLIYVCLNVNYRYRNLRMTRIIEQPLIFYLICLPFLILTMNISIFLMIIMFFHSYLLENGLAVNLLMLSITFFILIILIINTSGFTDTGEEWNMNFINVFTISSVAMSIFFHFNYSVTYLETANFRLFISPVINSSFEMSPIIGKMPIILGQSIMILFVVLNPYFYIYLKNNLQHILKHRYRQISGTNQSILHNKHRVLIFGSILPISALTMTVVIRFYPGNQQNSIDVVRIVSEILKMFLILVIMPEWRVEKLPSHKNFHKIINIFLFFGLFGVCVKFMSALVKYVMFVLDGHSGGRGLFIFSIDIVKLLELFSQTCFLSLSIDRTPGNCKRPFWWFLFFNCIMLFVSNFGDLIEEVIETVSDHELSNSTLRLLLGGLSAIFKPPVLLYYLISSVMIQ 465          
BLAST of SMED30024899 vs. Planmine SMEST
Match: SMESG000025344.1 (SMESG000025344.1)

HSP 1 Score: 101.679 bits (252), Expect = 8.921e-23
Identity = 119/461 (25.81%), Postives = 219/461 (47.51%), Query Frame = 3
Query:  177 VFILGLGIMSVYFYYSIRMIPSSAK---VLWKIYNYGISGFELLNILLIYVCLNVNYRYRNLRMTRIIEQPLIFYLICLPFLILTMNISIFLMIIMFFHSHLLENGLAVNLL---MXXXXXXXXXXXXXXXXGFKDTGEEWNMNFINVFTISSVAMSIFFHFNYSVI------FLETANFRLFISPVINSSFEM--SPIFGKMPIILGQSIMILFVVLNPYFYIYLKNNLQHILKHRYRQISGTNQSILHNKHRVLIFGSILPISALTMTVVIRFYPGNQQNSIDVVRIVSEILKM---FLILVIMPEWRVE-KLPSQKTFHKIINIXXXXXXXXVCVKFMSALVKYVMFVLDGHSGGRGFFIFSIDI-------VKLLELFSQTCFLSLSIDRTPGNCKRPFWWFLFFNCIMLFVSNFGDLIEEVIETVSDHELSNSTLRLLLGGLSAIYKPPILLYYLI 1484
            +F+ G+  ++ Y +Y  ++ P   +    L KI NY IS  ++++I+LI     +N+R+RNLR+   +EQPLIFYLICLP L     IS+  + ++ FH    ++G + N+L   ++   +F+ II++I+ +GF DTGEEW MN+ N  TI     S+      ++I      F  T N   F+S   N +F +     +  +  +  ++++ L +V  P+  I LK NL H+ + + ++    ++++L       I G       LT  V++      Q  ++  V I S I+K+   F I  ++     E K+ ++    + +N+       G   +F   +   V+ + +  + G G F  + DI       V L+E    T  +   +D    +  +  W   F++ I + +   G   E + ++  D E ++  +R++  G      P ++LY  I
Sbjct:   24 LFLFGMVYVTNYGFYVYQISPRGDRKDEYLDKI-NYSISFVKIVSIILICYNTQINHRFRNLRIKHKLEQPLIFYLICLPMLF----ISLMGLFVIIFHYTFEKSGTSTNILYFALVIFEYFLFIILVIDINGFSDTGEEWFMNYFNSMTIIITMTSVMIQICLNIIMILTDDFTNTMNRTTFVSLFSNHNFTIFDKTCYRTLVFLKKRAVITLSLVFIPFLVIPLKRNLTHLFRFKPKEDLPEDKTVLSMNKVSSITGGFTVGVFLTFIVIVHLLYVMQ--NVPQVIIASRIIKLLVSFFISCLLGIMITEIKISARLNSSQYLNVKNILIYLGAFGQFSVQITNIVVNIYNLQTNGNGLFESTKDILILTSNFVYLIETILMTTLMLFVLDGKAVSFPKNSWSIFFYSPINILILQIGVFTEYLTKSFYD-EQNSFQIRMMEIGTMYFAIPLVILYRAI 476          
BLAST of SMED30024899 vs. Planmine SMEST
Match: SMESG000025336.1 (SMESG000025336.1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.101e-20
Identity = 85/298 (28.52%), Postives = 157/298 (52.68%), Query Frame = 3
Query:  177 VFILGLGIMSVYFYYSIRMIPSSAK---VLWKIYNYGISGFELLNILLIYVCLNVNYRYRNLRMTRIIEQPLIFYLICLPFLILTMNISIFLMIIMFFHSHLLENGLAVNLL-MXXXXXXXXXXXXXXXXGFKDTGEEWNMNFINVFTISSVAMSIFFHFNYSVIFLETANFRLFISPVI------NSSFEM--SPIFGKMPIILGQSIMILFVVLNPYFYIYLKNNLQHILKHRYRQISGTNQSILHNKHRVLIFGSILPISALTMTVVIRFYPGNQQNSIDVVRIVSEILKMFLIL 1034
            +F+ G+  ++ Y +Y  R+ P+  +    + KI NY IS  ++++I+LI     +N+R+RNLR+   +EQPLIFYLICLP L++++ I +F++I+ +     ++N   +    ++   +F+ I+++I+ +GF DTGEEW MN+ N  TI     S+      ++I + T  F   ++ V+      N SF       + K+  +  ++++ L +   P+  I LK NL H+ + + +     +Q IL       I GS+     +T+  ++           + + + S I+K FLIL
Sbjct:   24 LFLFGMVYVTNYGFYVYRITPNENRNDGYIEKI-NYSISFVKVVSIILICYNTKINHRFRNLRIKHKLEQPLIFYLICLPILLMSL-IGVFVVILYYTFERSVKNPSHITYCSLVIFEYFLFIVLVIDINGFSDTGEEWFMNYFNSMTIIITMTSVIMQICLNIIMILTEEFSNSLNQVLHFNLYSNHSFTFFDKTSYNKIIFLKKRTVITLSLAFIPFLVIPLKRNLNHLFQFKTKDDLPEDQPILSMNKVSSITGSLTVGVYITLIFIVDLCNFVIHERGNYIYLTSRIIKAFLIL 319          
BLAST of SMED30024899 vs. Planmine SMEST
Match: SMESG000025342.1 (SMESG000025342.1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.144e-20
Identity = 84/298 (28.19%), Postives = 156/298 (52.35%), Query Frame = 3
Query:  177 VFILGLGIMSVYFYYSIRMIPSSAK---VLWKIYNYGISGFELLNILLIYVCLNVNYRYRNLRMTRIIEQPLIFYLICLPFLILTMNISIFLMIIMFFHSHLLENGLAVNLL-MXXXXXXXXXXXXXXXXGFKDTGEEWNMNFINVFTISSVAMSIFFHFNYSVIFLETANFRLFISPVI------NSSFEM--SPIFGKMPIILGQSIMILFVVLNPYFYIYLKNNLQHILKHRYRQISGTNQSILHNKHRVLIFGSILPISALTMTVVIRFYPGNQQNSIDVVRIVSEILKMFLIL 1034
            +F+ G+  ++ Y +Y  R+ P   +    + KI NY IS  ++++I+LI     +N+R+RNLR+   ++QPLIFYLICLP L++++ I +F++I+ +     ++N   +    ++   +F+ I+++I+ +GF DTGEEW MN+ N  TI     S+      ++I + T  F   ++ V+      N SF       + K+  +  ++++ L +   P+  I LK NL H+ + + +     +Q IL       I GS+     +T+  ++           + + + S I+K FLIL
Sbjct:   24 LFLFGMVYVTNYGFYVYRISPMENRNDGYIEKI-NYSISFVKVVSIILICYNTKINHRFRNLRIKHKLKQPLIFYLICLPILLMSL-IGVFVVILYYTFERSVKNPSHITYCSLVIFEYFLFIVLVIDINGFSDTGEEWFMNYFNSMTIIITMTSVIMQICLNIIMILTDEFFNSLNQVLHFNLYSNHSFTFFDKTSYNKIIFLKKRTVITLSLAFIPFLVIPLKRNLNHLFQFKTKDDLPEDQPILSMNKVSSITGSLTVGVYITLIFIVDLCNFVIHERGNYIYLTSRIIKAFLIL 319          
BLAST of SMED30024899 vs. Planmine SMEST
Match: SMESG000027122.1 (SMESG000027122.1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.458e-17
Identity = 121/467 (25.91%), Postives = 234/467 (50.11%), Query Frame = 3
Query:  141 RELLYRITGIVFVFILGLGIMSVYFYYSI--RMIPSSAKVLWKIYNYGISGFELLNILLIYVCLNVNYRYRNLRMTRIIEQPLIFYLICLPFLILTMNISIFLMIIMFFHSHLLENGLAVNLLMXXXXXXXXXXXXXXXXGFKDTGEEWNMNFINVFTISSVAMSIFFHFNYSVIFLETANFRLFISPVINSSFEMSP-----IFGKMPIILGQ----SIMILFVVLNPYFYIYLKNNLQHILKHRYRQISGTNQSILHNKHRVLIFGSILPISALTMTVVIRFYPGNQ--QNSIDVVRIVSEILKMFLILVIM-PEWRVEKLPSQKTFHKIINIXXXXXXXXVCVKFMSALVKYVM-FVLDGHSGGRGFFIFSIDIVKLLELFSQTCFLSLSIDRTPGNCKRPFWWFLFFNCIMLFVSNFGDLIEEVIETVSDHELSNSTLRLLLGGLSAIYKPPILLYYLISSVM 1496
            +E++ ++    ++F + L I+  Y  + I    +       ++   + ++   ++N+LLI     +NY+YRNLR +  IEQPL+FYLICLP L++ +     L I           G  + + + +  FF +II+I++ SGF DTGEE  +N +N  TI    +S+ F F+ + I L++ N  +F +   NS ++ S      +  K  + L +    SI++L +VL PY  I L+ NL+ + K     IS   + I       L    I+ ++  ++  ++     N   +N I    +V + + +F I  +M  E  +        F+ I NIFL FG  G  ++ ++ ++ +V+   +   +    +F+F   ++KLL+    +  +   ++R      R FW   F + +++F++ + +LI+E+++ V D++ +      +L G++++  P  +LY+L  S+M
Sbjct:    2 KEIVEKLIACAYLFTVSLSILLTYSTFIILNTQVQERCSYCFEFIQWPVNILMMVNVLLIVYNTKMNYKYRNLRFSLQIEQPLVFYLICLPLLLVILVALTLLTINSISRWFATRIGFVIEIGLAATEFFAVIILILDISGFSDTGEEPFINSVNSVTIIVTLISMGFLFSKNFI-LKSRN--IFKNSYNNSIYDKSRDDRSILSYKSNLFLNRLKETSILLLLIVLIPYMMIPLRENLRKLWKS--LSISKHKEHIGKKYTSYLTVSGIIIVTVYSIVSIVIGVNRNNFIKNPIYFFLMVVQEVSVFPIFYLMLQETNLWTRLMNVNFYNITNIFLHFGTIGQYLQTLNGILFHVIESQMKASTNNIDYFMFGFHLIKLLKTTITSLLVLAMVERNFKKPLRTFWNCFFSSPVLIFINQWANLIQELMQQV-DYK-NGFQANAILQGVTSLASPFCILYHLYCSMM 461          
The following BLAST results are available for this feature:
BLAST of SMED30024899 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024899 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024899 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024899 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024899 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024899 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024899 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024899 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024899 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024899 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024899 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024899 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024899 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024899 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000016790.10.000e+097.63SMESG000016790.1[more]
SMESG000025344.18.921e-2325.81SMESG000025344.1[more]
SMESG000025336.11.101e-2028.52SMESG000025336.1[more]
SMESG000025342.18.144e-2028.19SMESG000025342.1[more]
SMESG000027122.11.458e-1725.91SMESG000027122.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30024899 ID=SMED30024899|Name=SMED30024899|organism=Schmidtea mediterranea sexual|type=transcript|length=1548bp
TTACGATTTGTTACTAATCACAATTATCTTTAGTGTTGTTTGCATTTGCA
ACCATCAATCATGCATTCATATCCTGCTGTCGGTTCAGTTTACTAATTCT
TCACTAAATGGGTCCGATATACAATTCTCGATATTTTACTAGAGAGCTTT
TATACAGAATTACAGGGATAGTTTTTGTATTCATCTTGGGATTAGGAATT
ATGTCAGTTTACTTTTATTATTCAATTCGAATGATTCCCAGCAGTGCGAA
AGTTTTGTGGAAGATCTACAACTATGGGATATCGGGGTTTGAACTGCTGA
ACATCCTCCTGATCTACGTCTGCCTGAACGTCAACTATAGGTATCGAAAC
CTTAGGATGACGAGGATCATTGAACAACCTCTAATTTTCTATTTGATCTG
CTTGCCGTTTTTGATTTTAACAATGAATATCTCGATTTTTCTGATGATCA
TTATGTTTTTTCACAGTCACCTACTTGAAAACGGCTTGGCGGTCAATTTG
CTTATGTTATCAATTACATTTTTCATTCTAATTATCGTAATAATAAATAC
AAGTGGTTTCAAGGATACCGGGGAAGAATGGAACATGAATTTCATCAATG
TTTTTACCATTTCCAGTGTCGCAATGTCAATTTTCTTCCATTTCAATTAT
TCCGTTATCTTCCTTGAGACGGCAAATTTCCGGTTGTTTATAAGCCCAGT
CATCAATTCGAGTTTTGAAATGAGCCCTATTTTTGGGAAAATGCCCATAA
TTTTGGGTCAAAGTATCATGATTTTGTTTGTCGTGTTAAATCCTTATTTC
TATATCTATTTGAAAAATAACCTTCAACACATCCTTAAACATCGATACCG
TCAGATATCTGGCACAAATCAATCGATTTTGCACAATAAGCACCGGGTAT
TGATTTTCGGATCGATTCTGCCAATATCGGCATTGACAATGACAGTTGTG
ATCCGTTTTTATCCTGGAAATCAACAGAATTCGATTGATGTCGTTAGAAT
CGTTTCGGAAATTTTGAAAATGTTCCTTATATTGGTAATCATGCCCGAAT
GGCGAGTTGAGAAATTGCCGAGTCAGAAAACTTTTCACAAAATTATAAAT
ATTTTTTTATTTTTCGGATTGTTTGGAGTTTGTGTTAAATTCATGTCAGC
ATTAGTGAAATATGTGATGTTTGTTTTGGATGGCCATTCGGGCGGTAGAG
GGTTTTTCATCTTTTCTATTGACATCGTTAAACTTTTGGAATTATTTTCA
CAGACCTGCTTTTTGTCTTTGTCAATTGATCGAACTCCAGGAAATTGCAA
AAGACCTTTTTGGTGGTTTCTATTTTTCAATTGTATTATGCTCTTTGTTA
GTAACTTTGGAGACCTTATCGAGGAAGTCATCGAAACAGTATCCGATCAT
GAGCTGTCAAATTCTACACTTCGTTTACTTTTAGGAGGACTTTCTGCGAT
TTACAAACCGCCCATACTTTTATATTATCTTATATCTAGTGTTATGATTC
AAAATCTAATTATGAATTTATTATAAATATAACGTTTGTATTTGAGAT
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protein sequence of SMED30024899-orf-1

>SMED30024899-orf-1 ID=SMED30024899-orf-1|Name=SMED30024899-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=473bp
MGPIYNSRYFTRELLYRITGIVFVFILGLGIMSVYFYYSIRMIPSSAKVL
WKIYNYGISGFELLNILLIYVCLNVNYRYRNLRMTRIIEQPLIFYLICLP
FLILTMNISIFLMIIMFFHSHLLENGLAVNLLMLSITFFILIIVIINTSG
FKDTGEEWNMNFINVFTISSVAMSIFFHFNYSVIFLETANFRLFISPVIN
SSFEMSPIFGKMPIILGQSIMILFVVLNPYFYIYLKNNLQHILKHRYRQI
SGTNQSILHNKHRVLIFGSILPISALTMTVVIRFYPGNQQNSIDVVRIVS
EILKMFLILVIMPEWRVEKLPSQKTFHKIINIFLFFGLFGVCVKFMSALV
KYVMFVLDGHSGGRGFFIFSIDIVKLLELFSQTCFLSLSIDRTPGNCKRP
FWWFLFFNCIMLFVSNFGDLIEEVIETVSDHELSNSTLRLLLGGLSAIYK
PPILLYYLISSVMIQNLIMNLL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000418head
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 53..75
NoneNo IPR availableTMHMMTMhelixcoord: 21..43
NoneNo IPR availableTMHMMTMhelixcoord: 162..184
NoneNo IPR availableTMHMMTMhelixcoord: 329..351
NoneNo IPR availableTMHMMTMhelixcoord: 295..317
NoneNo IPR availableTMHMMTMhelixcoord: 263..285
NoneNo IPR availableTMHMMTMhelixcoord: 438..460
NoneNo IPR availableTMHMMTMhelixcoord: 213..235
NoneNo IPR availableTMHMMTMhelixcoord: 366..388
NoneNo IPR availableTMHMMTMhelixcoord: 401..418
NoneNo IPR availableTMHMMTMhelixcoord: 127..149
NoneNo IPR availableTMHMMTMhelixcoord: 95..117