c-Myc-binding protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30024869 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Homology
BLAST of c-Myc-binding protein vs. Ensembl Human
Match: MYCBP (MYC binding protein [Source:HGNC Symbol;Acc:HGNC:7554]) HSP 1 Score: 66.6254 bits (161), Expect = 1.022e-14 Identity = 30/82 (36.59%), Postives = 58/82 (70.73%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEY 371 +++R+YL++SG+ D L KVL +Y+EPEKP AL++++++L P PE+E L++ + E++ + + +NK+L K+++Y Sbjct: 12 EQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQY 93
BLAST of c-Myc-binding protein vs. Ensembl Human
Match: AL139260.3 (novel protein) HSP 1 Score: 65.855 bits (159), Expect = 1.867e-14 Identity = 30/82 (36.59%), Postives = 58/82 (70.73%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEY 371 +++R+YL++SG+ D L KVL +Y+EPEKP AL++++++L P PE+E L++ + E++ + + +NK+L K+++Y Sbjct: 19 EQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQY 100
BLAST of c-Myc-binding protein vs. Ensembl Fly
Match: CG4546 (gene:FBgn0038373 transcript:FBtr0083184) HSP 1 Score: 47.3654 bits (111), Expect = 7.352e-7 Identity = 26/71 (36.62%), Postives = 42/71 (59.15%), Query Frame = 3 Query: 120 RIQEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPE-------LEELKISVKELE 311 R+Q YRKYL+R+G+ D L K L +Y+E KP +A+ ++R + + P+ + LEE K + +LE Sbjct: 8 RVQ-YRKYLERAGVIDALSKALIKLYEEQNKPEDAIRFVRKFMCESCPDDAQYDVMKNDLEEAKTHISKLE 77
BLAST of c-Myc-binding protein vs. Ensembl Zebrafish
Match: mycbp (MYC binding protein [Source:ZFIN;Acc:ZDB-GENE-060331-97]) HSP 1 Score: 50.8322 bits (120), Expect = 1.249e-8 Identity = 24/83 (28.92%), Postives = 52/83 (62.65%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEYK 374 +++R+YL+++G+ D+L VL +Y+E EKP AL++I+++L + E L+ + L+ + + +N+EL ++ +Y+ Sbjct: 30 EQFRRYLEKAGVLDSLTNVLVALYEETEKPNNALDFIKHHLGVSGVEAEDAESLREELNTLQQKHQQLMEENQELKSRLLQYE 112
BLAST of c-Myc-binding protein vs. Ensembl Xenopus
Match: adrb2 (adrenoceptor beta 2 [Source:Xenbase;Acc:XB-GENE-494302]) HSP 1 Score: 65.0846 bits (157), Expect = 3.188e-14 Identity = 28/82 (34.15%), Postives = 56/82 (68.29%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEY 371 +++R+YL+++G+ D L KVL +Y+EPEKP AL++++ ++ P ++E L++ V EL+ + + +NKEL K++++ Sbjct: 8 EQFRRYLEKAGVLDTLTKVLVALYEEPEKPNNALDFLKQHMGAAGPETADVEALRLEVAELKQKYEAVLEENKELKAKLAQH 89
BLAST of c-Myc-binding protein vs. Ensembl Xenopus
Match: adrb2 (adrenoceptor beta 2 [Source:Xenbase;Acc:XB-GENE-494302]) HSP 1 Score: 65.0846 bits (157), Expect = 3.368e-14 Identity = 28/82 (34.15%), Postives = 56/82 (68.29%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEY 371 +++R+YL+++G+ D L KVL +Y+EPEKP AL++++ ++ P ++E L++ V EL+ + + +NKEL K++++ Sbjct: 12 EQFRRYLEKAGVLDTLTKVLVALYEEPEKPNNALDFLKQHMGAAGPETADVEALRLEVAELKQKYEAVLEENKELKAKLAQH 93
BLAST of c-Myc-binding protein vs. Ensembl Mouse
Match: Mycbp (MYC binding protein [Source:MGI Symbol;Acc:MGI:1891750]) HSP 1 Score: 65.855 bits (159), Expect = 1.325e-14 Identity = 30/82 (36.59%), Postives = 56/82 (68.29%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEY 371 +++R+YL++SG+ D L KVL +Y+EPEKP AL++++++L P PE+E L++ + E++ + +NK+L K+ +Y Sbjct: 12 EQFRRYLEKSGVLDTLTKVLVALYEEPEKPTSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEATVEENKKLKAKLVQY 93
BLAST of c-Myc-binding protein vs. Ensembl Mouse
Match: Mycbp (MYC binding protein [Source:MGI Symbol;Acc:MGI:1891750]) HSP 1 Score: 62.7734 bits (151), Expect = 5.857e-13 Identity = 25/61 (40.98%), Postives = 45/61 (73.77%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKEL 308 +++R+YL++SG+ D L KVL +Y+EPEKP AL++++++L P PE+E L++ + E+ Sbjct: 12 EQFRRYLEKSGVLDTLTKVLVALYEEPEKPTSALDFLKHHLGAATPENPEIELLRLELAEM 72
BLAST of c-Myc-binding protein vs. UniProt/SwissProt
Match: sp|Q99417|MYCBP_HUMAN (c-Myc-binding protein OS=Homo sapiens OX=9606 GN=MYCBP PE=1 SV=3) HSP 1 Score: 66.6254 bits (161), Expect = 4.909e-14 Identity = 30/82 (36.59%), Postives = 58/82 (70.73%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEY 371 +++R+YL++SG+ D L KVL +Y+EPEKP AL++++++L P PE+E L++ + E++ + + +NK+L K+++Y Sbjct: 12 EQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQY 93
BLAST of c-Myc-binding protein vs. UniProt/SwissProt
Match: sp|Q5R7A8|MYCBP_PONAB (c-Myc-binding protein OS=Pongo abelii OX=9601 GN=MYCBP PE=3 SV=3) HSP 1 Score: 66.2402 bits (160), Expect = 5.527e-14 Identity = 30/82 (36.59%), Postives = 58/82 (70.73%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEY 371 +++R+YL++SG+ D L KVL +Y+EPEKP AL++++++L P PE+E L++ + E++ + + +NK+L K+++Y Sbjct: 12 EQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELAEIKEKYEAIVEENKKLKAKLAQY 93
BLAST of c-Myc-binding protein vs. UniProt/SwissProt
Match: sp|Q2TBP7|MYCBP_BOVIN (c-Myc-binding protein OS=Bos taurus OX=9913 GN=MYCBP PE=3 SV=3) HSP 1 Score: 66.2402 bits (160), Expect = 5.709e-14 Identity = 30/82 (36.59%), Postives = 58/82 (70.73%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEY 371 +++R+YL++SG+ D L KVL +Y+EPEKP AL++++++L P PE+E L++ + E++ + + +NK+L K+++Y Sbjct: 12 EQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKTKLAQY 93
BLAST of c-Myc-binding protein vs. UniProt/SwissProt
Match: sp|Q9EQS3|MYCBP_MOUSE (c-Myc-binding protein OS=Mus musculus OX=10090 GN=Mycbp PE=1 SV=5) HSP 1 Score: 65.855 bits (159), Expect = 9.270e-14 Identity = 30/82 (36.59%), Postives = 56/82 (68.29%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEY 371 +++R+YL++SG+ D L KVL +Y+EPEKP AL++++++L P PE+E L++ + E++ + +NK+L K+ +Y Sbjct: 12 EQFRRYLEKSGVLDTLTKVLVALYEEPEKPTSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEATVEENKKLKAKLVQY 93
BLAST of c-Myc-binding protein vs. UniProt/SwissProt
Match: sp|Q54I57|MYCBP_DICDI (c-Myc-binding protein homolog OS=Dictyostelium discoideum OX=44689 GN=mycbp PE=3 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 3.114e-9 Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIR----NNLSQDPPNIP-ELEELKISVKELEMRCLDMQMK 338 +E++ YL++SG+ D L KVL G+Y+E +KP +ALE+I+ N+L D + E +LK V L R D+ K Sbjct: 8 EEFKGYLEKSGVIDALTKVLVGLYEESDKPSDALEFIKKHLGNSLGIDVDALKQENADLKAEVSALTQRVDDLSKK 83
BLAST of c-Myc-binding protein vs. TrEMBL
Match: A0A1I8GVQ6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig017412g1 PE=4 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.107e-16 Identity = 34/82 (41.46%), Postives = 58/82 (70.73%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEY 371 +E+RKYL+++G+ D L KVL G+Y+EPEKP ALE+++ +L P+ P++E +K+ + EL R ++ +N+EL K+ +Y Sbjct: 12 EEFRKYLEKAGVLDALTKVLVGLYEEPEKPNNALEFLKQHLGTAGPDAPDVEAMKVEITELRTRVEQLEAENQELREKVQQY 93
BLAST of c-Myc-binding protein vs. TrEMBL
Match: A0A267DXN0 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig003992g1 PE=4 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 5.296e-15 Identity = 33/82 (40.24%), Postives = 58/82 (70.73%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEY 371 +E+RKYL+++G+ D L KVL G+Y+EPEKP ALE+++ +L P+ P++E +K+ + EL R ++ +N+EL ++ +Y Sbjct: 12 EEFRKYLEKAGVLDALTKVLVGLYEEPEKPNNALEFLKLHLGTAGPDAPDVEAMKVEITELRTRKEQLEAENQELRGRLQQY 93
BLAST of c-Myc-binding protein vs. TrEMBL
Match: F6PWR0 (c-Myc-binding protein OS=Ciona intestinalis OX=7719 GN=LOC100180468 PE=4 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 1.264e-14 Identity = 35/82 (42.68%), Postives = 57/82 (69.51%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEY 371 +E+RKYL+++G+ D L KVL +Y+EPEKP ALE++ ++LS D P P++E LK+ V EL+ + + +N EL ++ +Y Sbjct: 12 EEFRKYLEKAGVIDALTKVLVNLYEEPEKPNNALEFLNHHLSGDGPETPDVEALKVDVIELKAKVSQLTDENIELKTRLEKY 93
BLAST of c-Myc-binding protein vs. TrEMBL
Match: A0A3P9MIN5 (Uncharacterized protein OS=Oryzias latipes OX=8090 PE=4 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 4.580e-14 Identity = 32/88 (36.36%), Postives = 59/88 (67.05%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEYKSNDEN 389 +++R+YL+++G+ D+L VL +Y++PEKP ALE++++NL ++E L+ V +L RC + +N+EL K+ +Y+S+ EN Sbjct: 12 EQFRRYLEKAGVVDSLTSVLVSLYEKPEKPTNALEFVKHNLGAVGQTSEDVEALQQEVIDLRQRCARLAEENEELKAKLQQYESSSEN 99
BLAST of c-Myc-binding protein vs. TrEMBL
Match: A0A3B3IMQ5 (Uncharacterized protein OS=Oryzias latipes OX=8090 GN=LOC101175507 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.762e-14 Identity = 32/88 (36.36%), Postives = 58/88 (65.91%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEYKSNDEN 389 +++R+YL+++G+ D+L VL +Y++PEKP ALE+++ NL ++E L+ V +L RC + +N+EL K+ +Y+S+ EN Sbjct: 12 EQFRRYLEKAGVVDSLTSVLVSLYEKPEKPTNALEFVKQNLGAVGQTSEDVEALQQEVIDLRQRCARLAEENEELKAKLQQYESSSEN 99
BLAST of c-Myc-binding protein vs. Ensembl Cavefish
Match: mycbp (MYC binding protein [Source:NCBI gene;Acc:111197019]) HSP 1 Score: 55.4546 bits (132), Expect = 9.382e-11 Identity = 27/83 (32.53%), Postives = 56/83 (67.47%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEYK 374 +++R+YL+++G+ D+L VL +Y+E +KP ALE+IR +LS P+ ++E L + + EL+ + + +N++L ++ +Y+ Sbjct: 12 EQFRRYLEKAGVLDSLTNVLVALYEETDKPNNALEFIRLHLSTGEPDSGDVETLCLELTELQQKYDALLEENRDLKNRLLQYE 94
BLAST of c-Myc-binding protein vs. Ensembl Cavefish
Match: mycbp (MYC binding protein [Source:NCBI gene;Acc:111197019]) HSP 1 Score: 55.4546 bits (132), Expect = 9.596e-11 Identity = 27/83 (32.53%), Postives = 56/83 (67.47%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEYK 374 +++R+YL+++G+ D+L VL +Y+E +KP ALE+IR +LS P+ ++E L + + EL+ + + +N++L ++ +Y+ Sbjct: 13 EQFRRYLEKAGVLDSLTNVLVALYEETDKPNNALEFIRLHLSTGEPDSGDVETLCLELTELQQKYDALLEENRDLKNRLLQYE 95
BLAST of c-Myc-binding protein vs. Ensembl Nematostella
Match: EDO42036 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S2N6]) HSP 1 Score: 67.0106 bits (162), Expect = 1.384e-15 Identity = 32/90 (35.56%), Postives = 57/90 (63.33%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEYK-SNDENV 392 +E+RKYL+++G+ D+L KVL +Y+EPEKP AL++++ +L P +++ LK+ V EL + + +N +L ++ Y+ DE V Sbjct: 13 EEFRKYLEKAGVLDSLTKVLVNLYEEPEKPHNALDFVKQHLHGGAPETADVDALKLEVSELRQKVEQLTAENTDLKQRLQTYEPQADEEV 102
BLAST of c-Myc-binding protein vs. Ensembl Medaka
Match: ENSORLT00000043049.1 (c-Myc-binding protein [Source:NCBI gene;Acc:101175507]) HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-17 Identity = 32/88 (36.36%), Postives = 58/88 (65.91%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEYKSNDEN 389 +++R+YL+++G+ D+L VL +Y++PEKP ALE+++ NL ++E L+ V +L RC + +N+EL K+ +Y+S+ EN Sbjct: 12 EQFRRYLEKAGVVDSLTSVLVSLYEKPEKPTNALEFVKQNLGAVGQTSEDVEALQQEVIDLRQRCARLAEENEELKAKLQQYESSSEN 99
BLAST of c-Myc-binding protein vs. Ensembl Medaka
Match: ENSORLT00000034494.1 (c-Myc-binding protein [Source:NCBI gene;Acc:101175507]) HSP 1 Score: 63.5438 bits (153), Expect = 5.811e-14 Identity = 28/79 (35.44%), Postives = 51/79 (64.56%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKI 362 +++R+YL+++G+ D+L VL +Y++PEKP ALE+++ NL ++E L+ V +L RC + +N+EL K+ Sbjct: 12 EQFRRYLEKAGVVDSLTSVLVSLYEKPEKPTNALEFVKQNLGAVGQTSEDVEALQQEVIDLRQRCARLAEENEELKAKV 90
BLAST of c-Myc-binding protein vs. Ensembl Medaka
Match: mycbp (c-Myc-binding protein [Source:NCBI gene;Acc:101171593]) HSP 1 Score: 60.8474 bits (146), Expect = 6.750e-13 Identity = 27/85 (31.76%), Postives = 56/85 (65.88%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEYKSN 380 +++R+YL++SG+ D L +L +Y+EPEKP AL++I+ L P + E L++ + +L+ +C + +N+EL K+ +++++ Sbjct: 6 EQFRRYLEKSGVLDTLTSILVALYEEPEKPNNALDFIKLQLGAAGPEPADAEALRMELADLQQKCNLLMKENEELRNKLMQFETS 90
BLAST of c-Myc-binding protein vs. Ensembl Medaka
Match: mycbp (c-Myc-binding protein [Source:NCBI gene;Acc:101171593]) HSP 1 Score: 60.8474 bits (146), Expect = 7.554e-13 Identity = 27/85 (31.76%), Postives = 56/85 (65.88%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEYKSN 380 +++R+YL++SG+ D L +L +Y+EPEKP AL++I+ L P + E L++ + +L+ +C + +N+EL K+ +++++ Sbjct: 8 EQFRRYLEKSGVLDTLTSILVALYEEPEKPNNALDFIKLQLGAAGPEPADAEALRMELADLQQKCNLLMKENEELRNKLMQFETS 92
BLAST of c-Myc-binding protein vs. Planmine SMEST
Match: SMESG000006427.1 (SMESG000006427.1) HSP 1 Score: 198.364 bits (503), Expect = 4.729e-67 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 3 Query: 96 MNSEQLYIRIQEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEYKSNDENVV 395 MNSEQLYIRIQEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEYKSNDENVV Sbjct: 1 MNSEQLYIRIQEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEYKSNDENVV 100
BLAST of c-Myc-binding protein vs. Planmine SMEST
Match: SMESG000001466.1 (SMESG000001466.1) HSP 1 Score: 58.5362 bits (140), Expect = 6.172e-12 Identity = 31/87 (35.63%), Postives = 55/87 (63.22%), Query Frame = 3 Query: 126 QEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRN--NLSQDPPNIPELEELKISVKELEMRCLDMQMKNKELLLKISEYKSN 380 +E++KYL+R G+ D L KVL +Y+EPEKP ALE++RN ++Q ++E +K ++ EL+ + + +N+ L ++ E + N Sbjct: 8 EEFKKYLERCGVLDILTKVLVELYEEPEKPSNALEFLRNQIGVTQSSDENVDVESMKSTISELQQQLEQLTTENETLKSQLEELQKN 94 The following BLAST results are available for this feature:
BLAST of c-Myc-binding protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of c-Myc-binding protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of c-Myc-binding protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of c-Myc-binding protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of c-Myc-binding protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of c-Myc-binding protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of c-Myc-binding protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of c-Myc-binding protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of c-Myc-binding protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of c-Myc-binding protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of c-Myc-binding protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of c-Myc-binding protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of c-Myc-binding protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 4
BLAST of c-Myc-binding protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30024869 ID=SMED30024869|Name=c-Myc-binding protein|organism=Schmidtea mediterranea sexual|type=transcript|length=405bpback to top protein sequence of SMED30024869-orf-1 >SMED30024869-orf-1 ID=SMED30024869-orf-1|Name=SMED30024869-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=101bp MNSEQLYIRIQEYRKYLDRSGITDNLFKVLTGIYQEPEKPLEALEYIRNNback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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