Intermediate filament protein
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Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Expression Details Intermediate filament protein ( vim-3 ) is expressed during Stage 5, Stage 6, Stage 7 and Stage 8 in the integumental system, Category 5 cell and epidermis
Click to see image symbols and abbreviations
Anatomical Expression
PAGE et. al., 2020SMED30024865 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 46Note: Hover over icons to view figure legend
Homology
BLAST of Intermediate filament protein vs. Ensembl Human
Match: VIM (vimentin [Source:HGNC Symbol;Acc:HGNC:12692]) HSP 1 Score: 125.176 bits (313), Expect = 5.817e-30 Identity = 135/439 (30.75%), Postives = 223/439 (50.80%), Query Frame = 1
Query: 307 TTSRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQGLSNIPLIR--GDSV--ALQSGV-TSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRI-------ADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV-----NFSG 1572
+TSRS Y S P G Y+ +S++ + S++P +R DSV +L + T K R EK +LQ+LN+RFA+YI+K RFLE QNK L E+E+LKG Q S++ ++YE E+ +LR V++ KA +E + D+L +I LR++L + E+++ +EE + + L+ RQD + +LA L LE +++SL+E + F K++H+ E++EL + ++ + ++ ALRD++ +YE+ QE E Y + ++ + R+N K+E++ + Q+QS+ + LE Q E E N ANY++T + LQ+++ ++E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ NFS
Sbjct: 47 STSRSLYA--SSP-----------GGVYATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKG---QGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL------------------------QEEMLQ---------------REEAE---NTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDT-------IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSS 420
BLAST of Intermediate filament protein vs. Ensembl Human
Match: VIM (vimentin [Source:HGNC Symbol;Acc:HGNC:12692]) HSP 1 Score: 125.176 bits (313), Expect = 9.761e-30 Identity = 135/439 (30.75%), Postives = 223/439 (50.80%), Query Frame = 1
Query: 307 TTSRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQGLSNIPLIR--GDSV--ALQSGV-TSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRI-------ADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV-----NFSG 1572
+TSRS Y S P G Y+ +S++ + S++P +R DSV +L + T K R EK +LQ+LN+RFA+YI+K RFLE QNK L E+E+LKG Q S++ ++YE E+ +LR V++ KA +E + D+L +I LR++L + E+++ +EE + + L+ RQD + +LA L LE +++SL+E + F K++H+ E++EL + ++ + ++ ALRD++ +YE+ QE E Y + ++ + R+N K+E++ + Q+QS+ + LE Q E E N ANY++T + LQ+++ ++E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ NFS
Sbjct: 47 STSRSLYA--SSP-----------GGVYATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKG---QGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL------------------------QEEMLQ---------------REEAE---NTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDT-------IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSS 420
BLAST of Intermediate filament protein vs. Ensembl Human
Match: VIM (vimentin [Source:HGNC Symbol;Acc:HGNC:12692]) HSP 1 Score: 125.176 bits (313), Expect = 9.761e-30 Identity = 135/439 (30.75%), Postives = 223/439 (50.80%), Query Frame = 1
Query: 307 TTSRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQGLSNIPLIR--GDSV--ALQSGV-TSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRI-------ADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV-----NFSG 1572
+TSRS Y S P G Y+ +S++ + S++P +R DSV +L + T K R EK +LQ+LN+RFA+YI+K RFLE QNK L E+E+LKG Q S++ ++YE E+ +LR V++ KA +E + D+L +I LR++L + E+++ +EE + + L+ RQD + +LA L LE +++SL+E + F K++H+ E++EL + ++ + ++ ALRD++ +YE+ QE E Y + ++ + R+N K+E++ + Q+QS+ + LE Q E E N ANY++T + LQ+++ ++E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ NFS
Sbjct: 47 STSRSLYA--SSP-----------GGVYATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKG---QGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL------------------------QEEMLQ---------------REEAE---NTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDT-------IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSS 420
BLAST of Intermediate filament protein vs. Ensembl Human
Match: LMNA (lamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]) HSP 1 Score: 114.39 bits (285), Expect = 6.617e-26 Identity = 148/580 (25.52%), Postives = 265/580 (45.69%), Query Frame = 1
Query: 439 RGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLR--------------KRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMV------YWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDN--VETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEID-----DASWGVGNNVVTTLCDSEGAEKA 2097
R + A + ++ + R QEK DLQ+LN+R A YI++ R LE +N L I + + ++ S IK YE E+ R ++ K +A L+ ++ + E +L+ RL LE + + ++ + + EGEL +LR A + + K K L+D++ LR+ + E+ LQ++KE L+F+K I+ E++E R T+ + ++S + AL++++ ++E+++ K+ELE +Y ++ R S R++ V H + + SRI+ I S+ ++++ L+ Q A E L ++ + + + L + ++ + + L E Q LLD KL L++EI AY KLLE EE R+ S + S+ + + SS G G E+T+ +S + RT+ G +++ E D G + L N + +S+ IKR +G + +++ K L AG+ +++ A G G D +WG GN++ T L +S G E A
Sbjct: 11 RSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAK---KQLQDEM--LRR---------VDAENRLQTMKEELDFQKNIYSEELRE---TKRRHETRLVEIDNGKQREFESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIR--IDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQGGGSVTKKRKL----------------------------ESTESRSSFSQHARTS-GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKR-QNGDDPLLTYRFPPKFTLKAGQVVTIWAAG--AGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539
BLAST of Intermediate filament protein vs. Ensembl Human
Match: LMNA (lamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]) HSP 1 Score: 115.161 bits (287), Expect = 6.811e-26 Identity = 148/580 (25.52%), Postives = 265/580 (45.69%), Query Frame = 1
Query: 439 RGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLR--------------KRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMV------YWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDN--VETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEID-----DASWGVGNNVVTTLCDSEGAEKA 2097
R + A + ++ + R QEK DLQ+LN+R A YI++ R LE +N L I + + ++ S IK YE E+ R ++ K +A L+ ++ + E +L+ RL LE + + ++ + + EGEL +LR A + + K K L+D++ LR+ + E+ LQ++KE L+F+K I+ E++E R T+ + ++S + AL++++ ++E+++ K+ELE +Y ++ R S R++ V H + + SRI+ I S+ ++++ L+ Q A E L ++ + + + L + ++ + + L E Q LLD KL L++EI AY KLLE EE R+ S + S+ + + SS G G E+T+ +S + RT+ G +++ E D G + L N + +S+ IKR +G + +++ K L AG+ +++ A G G D +WG GN++ T L +S G E A
Sbjct: 11 RSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAK---KQLQDEM--LRR---------VDAENRLQTMKEELDFQKNIYSEELRE---TKRRHETRLVEIDNGKQREFESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIR--IDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQGGGSVTKKRKL----------------------------ESTESRSSFSQHARTS-GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKR-QNGDDPLLTYRFPPKFTLKAGQVVTIWAAG--AGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 234.187 bits (596), Expect = 9.683e-68 Identity = 173/556 (31.12%), Postives = 296/556 (53.24%), Query Frame = 1
Query: 460 QSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIG-TKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDA--SWGVGNNVVTTLCDSEGAEKAAHYQEVS 2118
Q+ ++++ R +EK+++ DLN+R ASYIEK RFLEAQN++LA +++ L+ +D I+ +YE E+ + L++E+ K + +E Q+ ++ E+ ++R++L Q ++ ID +S E E+ L+R +V + K+E + L +L++ R D ++E L + ++++Q+L E ++F +++HD E+KEL T+A RD T EN ++++E+ A+RDI+ EY+ + ++E+ Y L++QEI+T R N+E + KEE R+++Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+ ++E + ELQ LLD K L+ EIA Y K+LE EE+R A L Q + + + + ET QS F+R+ KGN+SI E G I+L+N K E++ +KR +DG + +T+ L AG+ + + A+ + + + DA S+G GNNV T L + EG E+A H Q S
Sbjct: 56 QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENR--------AGLKQLVE-------------------------QVVKTHAITQETDTETMRVVKGETASRQS----FQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRAGKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQRQS 573
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 233.802 bits (595), Expect = 1.342e-67 Identity = 173/556 (31.12%), Postives = 296/556 (53.24%), Query Frame = 1
Query: 460 QSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIG-TKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDA--SWGVGNNVVTTLCDSEGAEKAAHYQEVS 2118
Q+ ++++ R +EK+++ DLN+R ASYIEK RFLEAQN++LA +++ L+ +D I+ +YE E+ + L++E+ K + +E Q+ ++ E+ ++R++L Q ++ ID +S E E+ L+R +V + K+E + L +L++ R D ++E L + ++++Q+L E ++F +++HD E+KEL T+A RD T EN ++++E+ A+RDI+ EY+ + ++E+ Y L++QEI+T R N+E + KEE R+++Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+ ++E + ELQ LLD K L+ EIA Y K+LE EE+R A L Q + + + + ET QS F+R+ KGN+SI E G I+L+N K E++ +KR +DG + +T+ L AG+ + + A+ + + + DA S+G GNNV T L + EG E+A H Q S
Sbjct: 56 QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENR--------AGLKQLVE-------------------------QVVKTHAITQETDTETMRVVKGETASRQS----FQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRAGKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQRQS 573
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 233.417 bits (594), Expect = 1.396e-67 Identity = 173/556 (31.12%), Postives = 296/556 (53.24%), Query Frame = 1
Query: 460 QSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIG-TKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDA--SWGVGNNVVTTLCDSEGAEKAAHYQEVS 2118
Q+ ++++ R +EK+++ DLN+R ASYIEK RFLEAQN++LA +++ L+ +D I+ +YE E+ + L++E+ K + +E Q+ ++ E+ ++R++L Q ++ ID +S E E+ L+R +V + K+E + L +L++ R D ++E L + ++++Q+L E ++F +++HD E+KEL T+A RD T EN ++++E+ A+RDI+ EY+ + ++E+ Y L++QEI+T R N+E + KEE R+++Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+ ++E + ELQ LLD K L+ EIA Y K+LE EE+R A L Q + + + + ET QS F+R+ KGN+SI E G I+L+N K E++ +KR +DG + +T+ L AG+ + + A+ + + + DA S+G GNNV T L + EG E+A H Q S
Sbjct: 48 QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENR--------AGLKQLVE-------------------------QVVKTHAITQETDTETMRVVKGETASRQS----FQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRAGKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQRQS 565
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 233.417 bits (594), Expect = 1.396e-67 Identity = 173/556 (31.12%), Postives = 296/556 (53.24%), Query Frame = 1
Query: 460 QSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIG-TKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDA--SWGVGNNVVTTLCDSEGAEKAAHYQEVS 2118
Q+ ++++ R +EK+++ DLN+R ASYIEK RFLEAQN++LA +++ L+ +D I+ +YE E+ + L++E+ K + +E Q+ ++ E+ ++R++L Q ++ ID +S E E+ L+R +V + K+E + L +L++ R D ++E L + ++++Q+L E ++F +++HD E+KEL T+A RD T EN ++++E+ A+RDI+ EY+ + ++E+ Y L++QEI+T R N+E + KEE R+++Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+ ++E + ELQ LLD K L+ EIA Y K+LE EE+R A L Q + + + + ET QS F+R+ KGN+SI E G I+L+N K E++ +KR +DG + +T+ L AG+ + + A+ + + + DA S+G GNNV T L + EG E+A H Q S
Sbjct: 48 QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENR--------AGLKQLVE-------------------------QVVKTHAITQETDTETMRVVKGETASRQS----FQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRAGKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQRQS 565
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 233.417 bits (594), Expect = 1.396e-67 Identity = 173/556 (31.12%), Postives = 296/556 (53.24%), Query Frame = 1
Query: 460 QSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIG-TKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDA--SWGVGNNVVTTLCDSEGAEKAAHYQEVS 2118
Q+ ++++ R +EK+++ DLN+R ASYIEK RFLEAQN++LA +++ L+ +D I+ +YE E+ + L++E+ K + +E Q+ ++ E+ ++R++L Q ++ ID +S E E+ L+R +V + K+E + L +L++ R D ++E L + ++++Q+L E ++F +++HD E+KEL T+A RD T EN ++++E+ A+RDI+ EY+ + ++E+ Y L++QEI+T R N+E + KEE R+++Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+ ++E + ELQ LLD K L+ EIA Y K+LE EE+R A L Q + + + + ET QS F+R+ KGN+SI E G I+L+N K E++ +KR +DG + +T+ L AG+ + + A+ + + + DA S+G GNNV T L + EG E+A H Q S
Sbjct: 48 QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENR--------AGLKQLVE-------------------------QVVKTHAITQETDTETMRVVKGETASRQS----FQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRAGKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQRQS 565
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: LamC (gene:FBgn0010397 transcript:FBtr0087512) HSP 1 Score: 117.087 bits (292), Expect = 6.071e-27 Identity = 150/566 (26.50%), Postives = 263/566 (46.47%), Query Frame = 1
Query: 451 VALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRL--MMLEDINSQYKSTIDKQR-KDISG-FEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELAT---VAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVA-LTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTE-RETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 2121
V S + + R QEK +LQ LN+R A YI++ R LE +N +L E+ + ++ S +K +YE E+ R L++E+ K KA LE + L E DDL+ RL E ++ + + + R +++G + L + ++F+ Q ++ E E ++ DDL+K E E LA + LE++ QSL+E L F+ Q+H E+ E + + + +++++ ++L++++ +YE ++ ++E+E Y ++Q ++ + R + EE ++++I + +++ +LE NA + + N +T+R Q + E ++ L E Q L+D K+ L+LEIAAY KLL EE R+N G T +S S A G G + G S + +E R ++Y KG++ I E D+ G I L N GT+ +L G + R+ E F+ KV A I G + + W V N++ + L +++ E A Y V A
Sbjct: 30 VGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFED-QAKELALENERLRRQLDDLRK---QLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELE-NLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTDSGISSNGSHLTASASSRSGRVTPSGRRSATPGISGSSAVKRRRTVIDESEDRTLSEY-----SVNAAAKGDLEIIEADVEGRFIKLHNKGTEEINLTGWQLTRIAGDEELAFKFSRGSKVLGGASVTIWSVDAGTAHDPPNNL-VMKKKWPVANSMRSVLANAD-KEDVASYDRVRA 583
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: LamC (gene:FBgn0010397 transcript:FBtr0333166) HSP 1 Score: 113.62 bits (283), Expect = 8.237e-26 Identity = 146/553 (26.40%), Postives = 257/553 (46.47%), Query Frame = 1
Query: 451 VALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRL--MMLEDINSQYKSTIDKQR-KDISG-FEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELAT---VAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVA-LTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTE-RETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSE 2082
V S + + R QEK +LQ LN+R A YI++ R LE +N +L E+ + ++ S +K +YE E+ R L++E+ K KA LE + L E DDL+ RL E ++ + + + R +++G + L + ++F+ Q ++ E E LR L LR+ E E LA + LE++ QSL+E L F+ Q+H E+ E + + + +++++ ++L++++ +YE ++ ++E+E Y ++Q ++ + R + EE ++++I + +++ +LE NA + + N +T+R Q + E ++ L E Q L+D K+ L+LEIAAY KLL EE R+N G T +S S A G G + G S + +E R ++Y KG++ I E D+ G I L N GT+ +L G + R+ E F+ KV A I G + + W V N++ + L +++
Sbjct: 30 VGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFED-QAKELALENER---LRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELE-NLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTDSGISSNGSHLTASASSRSGRVTPSGRRSATPGISGSSAVKRRRTVIDESEDRTLSEY-----SVNAAAKGDLEIIEADVEGRFIKLHNKGTEEINLTGWQLTRIAGDEELAFKFSRGSKVLGGASVTIWSVDAGTAHDPPNNL-VMKKKWPVANSMRSVLANAD 571
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0346460) HSP 1 Score: 112.079 bits (279), Expect = 2.859e-25 Identity = 136/567 (23.99%), Postives = 262/567 (46.21%), Query Frame = 1
Query: 463 SGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELV-------ELRRFKGTQGA-------DVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKE---LATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVD--GSENKISFTISGKVNLN-------AGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEG 2085
S ++ + R EK +LQ+LN+R A+YI++ R LE +N +L E++ + ++ + IK I+E E+ + R L++++ + +A E + L E N + K+ +DK+ K+ + EG + EL A D+N+ +E++ LR ++ R++ E+E L+ + LE+ +QSL+E L F+ QIH E+ E + Y + + +++ ++L++++ +YE ++ + E+++ Y ++Q ++ + R + T EE + +I ++ + I +LE NA+ + ++ + + ++ L+++L ++E+T L E Q L+D K+ L+LEIAAY KLL EE+R+N + N Q SF+ S + + E+ D+ + KGN+ I E D G + L N G++ ++ G ++R+++ G F S ++ N A K S + K ++ W +N T L +SEG
Sbjct: 42 SPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEE--------------NEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQ--SFSQSLRNSTRATPSRRTPSAAVKRKRAVVD-----------------ESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQK-------WVSADNTRTILLNSEG 568
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0307059) HSP 1 Score: 112.079 bits (279), Expect = 2.859e-25 Identity = 136/567 (23.99%), Postives = 262/567 (46.21%), Query Frame = 1
Query: 463 SGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELV-------ELRRFKGTQGA-------DVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKE---LATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVD--GSENKISFTISGKVNLN-------AGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEG 2085
S ++ + R EK +LQ+LN+R A+YI++ R LE +N +L E++ + ++ + IK I+E E+ + R L++++ + +A E + L E N + K+ +DK+ K+ + EG + EL A D+N+ +E++ LR ++ R++ E+E L+ + LE+ +QSL+E L F+ QIH E+ E + Y + + +++ ++L++++ +YE ++ + E+++ Y ++Q ++ + R + T EE + +I ++ + I +LE NA+ + ++ + + ++ L+++L ++E+T L E Q L+D K+ L+LEIAAY KLL EE+R+N + N Q SF+ S + + E+ D+ + KGN+ I E D G + L N G++ ++ G ++R+++ G F S ++ N A K S + K ++ W +N T L +SEG
Sbjct: 42 SPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEE--------------NEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQ--SFSQSLRNSTRATPSRRTPSAAVKRKRAVVD-----------------ESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQK-------WVSADNTRTILLNSEG 568
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0307058) HSP 1 Score: 112.079 bits (279), Expect = 2.859e-25 Identity = 136/567 (23.99%), Postives = 262/567 (46.21%), Query Frame = 1
Query: 463 SGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELV-------ELRRFKGTQGA-------DVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKE---LATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVD--GSENKISFTISGKVNLN-------AGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEG 2085
S ++ + R EK +LQ+LN+R A+YI++ R LE +N +L E++ + ++ + IK I+E E+ + R L++++ + +A E + L E N + K+ +DK+ K+ + EG + EL A D+N+ +E++ LR ++ R++ E+E L+ + LE+ +QSL+E L F+ QIH E+ E + Y + + +++ ++L++++ +YE ++ + E+++ Y ++Q ++ + R + T EE + +I ++ + I +LE NA+ + ++ + + ++ L+++L ++E+T L E Q L+D K+ L+LEIAAY KLL EE+R+N + N Q SF+ S + + E+ D+ + KGN+ I E D G + L N G++ ++ G ++R+++ G F S ++ N A K S + K ++ W +N T L +SEG
Sbjct: 42 SPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEE--------------NEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQ--SFSQSLRNSTRATPSRRTPSAAVKRKRAVVD-----------------ESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQK-------WVSADNTRTILLNSEG 568
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: viml (vimentin like [Source:ZFIN;Acc:ZDB-GENE-040426-1743]) HSP 1 Score: 116.316 bits (290), Expect = 4.242e-27 Identity = 123/419 (29.36%), Postives = 204/419 (48.69%), Query Frame = 1
Query: 373 TSGMSYSAQSNSQQGLSNIPLIRGDSVALQ---SGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVN--ESEKSKAPLEAQVDSLEYEIDDLRKRLM--MLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSF 1608
+S + Y+++S + + +P + +++ + T K R EK +Q LN+RFASYIEK RFLE QNK L+ E+E+L+G Q +S+I ++YE E+ LR V+ +EK++A E D+L +++ L+++L ML QR+D + +K RQD + ALA + LE +++SL++ L F K +HD E+ EL T + M + ++ ALRD++ +YEN + QE E Y + ++ + R+N K+E + + Q+Q++ + L N E + + N+ + + L+E + + E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ A L F SF
Sbjct: 39 SSPVIYASKSAKVRSSAAMPRLTSETLDFNLSDALNTEFKANRLNEKAQMQSLNDRFASYIEKVRFLEQQNKILSAELEQLRG---QRSSRIADLYEEEMRDLRRQVDLLTTEKTRA--EVMRDNLAEDVERLKEKLQDEML-------------QREDAE-------------------------------NSMKSFRQDVDNAALARVDLERKVESLQDELAFLKNLHDEELAELQTQIQGQQVQVEMDMAKPDLTAALRDVRLQYENLASKNIQESEDWYKSKFADLTEAANRNNEALRLAKQETNEYRRQVQAITCELDALRGTNESLERQMREMEENFSMESSGFQNTIGRLEEDIGNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI------AAPLPNFSSF 402
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: vim (vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]) HSP 1 Score: 110.538 bits (275), Expect = 3.390e-25 Identity = 114/396 (28.79%), Postives = 191/396 (48.23%), Query Frame = 1
Query: 421 SNIPLIRGDSVALQSGV-----TSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLM--MLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV-----NFSG 1572
S PL R + L G+ T K R EK ++Q LN+RFASYI+K RFLE QNK L E+E+L+G S++ ++YE E+ +LR V++ K+ +E D+L +I+ L++RL ML QR+D + L+ RQD + +LA L LE +++SL+E + F K++HD E+ E+ + +M + ++ AL+D++ +YE + QE E Y + ++ + R+N K+E + + Q+Q++ + L+ N E + + ++ + + L++ + + E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ NFS
Sbjct: 63 SGAPLPRLATDTLDFGLAEAINTEFKANRTNEKAEMQHLNDRFASYIDKVRFLEQQNKILIAELEQLRGKGA---SRVGDLYEDEMRELRRQVDQLTGEKSKVEVDRDNLGEDIERLKERLQEEML-------------QREDAE-------------------------------NSLRSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEELAEMQIQMQEQHLQIDMEVAKPDLTAALKDVRQQYETLASRNLQESEDWYKSKFADLSEAAARNNETIRLAKQEANDYRRQLQALTCDLEALKGTNESLERQMRELEDSFSMEASGYQDTIGRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITSPFPNFSS 411
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: desma (desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]) HSP 1 Score: 108.227 bits (269), Expect = 2.802e-24 Identity = 111/377 (29.44%), Postives = 184/377 (48.81%), Query Frame = 1
Query: 490 RAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRK-RLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTL-RDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQN-------AEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLS 1593
R EK +LQ LN+RFASYIEK RFLE QN L EIE+L+G ++ ++I E+YE E+ +LR V ++ +E + D+L +DDL+K +L + E+I+ + ++ ++S F ADV+ TL R DL++ ++ L E + F ++IH+ E++EL + M + ++ ALRDI+ +YE E E Y ++ ++ + ++N K+E + + Q+QS I L+ N +E E L Y++T + L+ ++ + E+ L E Q LL+ K+ L++EIA Y KLLE EESR++ ++LS
Sbjct: 99 RTNEKAELQHLNDRFASYIEKVRFLEQQNSALTVEIERLRG---REPTRIAELYEEEMRELRRQVEALTNQRSRVEIERDNL---VDDLQKLKLRLQEEIHQK-----EEAENNLSAFR--------------ADVD-----AATLARLDLER-----------------RIEGLHEEIAFLRKIHEEEIRELQNQMQESQVQIQMDMSKPDLTAALRDIRLQYEAIAAKNISEAEDWYKSKVSDLNQAVNKNNEALREAKQETMQFRHQLQSYTCEIDSLKGTNESLRRQMSEMEERLGREAGGYQDT-------IARLEAEIAKMKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRISLPVQSFSSLS 421
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: desma (desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]) HSP 1 Score: 107.842 bits (268), Expect = 2.891e-24 Identity = 111/377 (29.44%), Postives = 184/377 (48.81%), Query Frame = 1
Query: 490 RAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRK-RLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTL-RDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQN-------AEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLS 1593
R EK +LQ LN+RFASYIEK RFLE QN L EIE+L+G ++ ++I E+YE E+ +LR V ++ +E + D+L +DDL+K +L + E+I+ + ++ ++S F ADV+ TL R DL++ ++ L E + F ++IH+ E++EL + M + ++ ALRDI+ +YE E E Y ++ ++ + ++N K+E + + Q+QS I L+ N +E E L Y++T + L+ ++ + E+ L E Q LL+ K+ L++EIA Y KLLE EESR++ ++LS
Sbjct: 99 RTNEKAELQHLNDRFASYIEKVRFLEQQNSALTVEIERLRG---REPTRIAELYEEEMRELRRQVEALTNQRSRVEIERDNL---VDDLQKLKLRLQEEIHQK-----EEAENNLSAFR--------------ADVD-----AATLARLDLER-----------------RIEGLHEEIAFLRKIHEEEIRELQNQMQESQVQIQMDMSKPDLTAALRDIRLQYEAIAAKNISEAEDWYKSKVSDLNQAVNKNNEALREAKQETMQFRHQLQSYTCEIDSLKGTNESLRRQMSEMEERLGREAGGYQDT-------IARLEAEIAKMKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRISLPVQSFSSLS 421
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: desmb (desmin b [Source:ZFIN;Acc:ZDB-GENE-061027-102]) HSP 1 Score: 98.9821 bits (245), Expect = 2.156e-21 Identity = 105/370 (28.38%), Postives = 181/370 (48.92%), Query Frame = 1
Query: 490 RAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRK-RLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTL-RDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLS 1593
R EK +LQ LN+RFA+YIEK R LE QN+ L E+E+L+G ++ ++I ++YE E+ +LR V ++ +E + D+L DDL+K +L + E+I + ++ ++S F ADV+ TL R DL++ +++L+E + F K+IH+ E++EL + M + ++ ALRDI+ +YE E E Y ++ ++ + +++N K E + QIQS I L+ N + ++ + +L+ + L+ ++ + E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ +T+S
Sbjct: 106 RTNEKAELQHLNDRFANYIEKVRMLEQQNQVLGVEVERLRG---REPTRIADLYEDEMRELRREVEVVTNHRSRVEVERDNL---ADDLQKLKLRLQEEI-----ALREEAENNLSAFR--------------ADVD-----AATLARLDLER-----------------RIETLQEEIAFLKKIHEEEIRELQAQMQETQVQIQMDMSKPDLTAALRDIRAQYEGIAAKNIAEAEDWYKSKVSDLNQAVSKNNEALKQSKLETMEYRHQIQSYTCEIDSLKGSNESLMRQMRDMEDRHGREAGALQDTIARLEAEIANMKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRIVMPMQSYSTIS 428
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: vim (vimentin [Source:NCBI gene;Acc:496727]) HSP 1 Score: 117.087 bits (292), Expect = 3.235e-27 Identity = 108/372 (29.03%), Postives = 192/372 (51.61%), Query Frame = 1
Query: 481 KKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKG-GTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLS 1593
K R EK ++Q+LN+RFA++I+K RFLE QNK L E+E+LKG GT S+I ++YE E+ +LR +++ +K +E D+L ++ LR++L + E+++ KEE + +L+ RQD + +LA + LE +++SL+E + F K++HD E++EL + +M + ++ ALRD++ +YEN + E Y + ++ + R+N K++ + + QIQ++ I ++ N YE + + N+ + + + LQE++ ++E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ +++S
Sbjct: 93 KANRTNEKAEMQELNDRFANFIDKVRFLEQQNKILVAELEQLKGKGT----SRIGDLYEEEMRELRRQLDQVTNAKDRVEVDRDNLADDLQRLREKL------------------------QDEMIQ---------------KEEAEG---NLQSFRQDVDNASLARIDLERKVESLQEEIVFLKKLHDEEIRELQLQIQESHIQVDMDVSKPDLTAALRDVRQQYENVAAKNLSDAEDWYKSKFADLSEAANRNNDALRQAKQDANDYRRQIQTLTCEIDAMKGSNESYERQMREMEENFAGEAANYQDTIQRLQEEIHNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITVPVHSFSSMS 418
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: vim (vimentin [Source:NCBI gene;Acc:496727]) HSP 1 Score: 116.701 bits (291), Expect = 4.701e-27 Identity = 108/372 (29.03%), Postives = 192/372 (51.61%), Query Frame = 1
Query: 481 KKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKG-GTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLS 1593
K R EK ++Q+LN+RFA++I+K RFLE QNK L E+E+LKG GT S+I ++YE E+ +LR +++ +K +E D+L ++ LR++L + E+++ KEE + +L+ RQD + +LA + LE +++SL+E + F K++HD E++EL + +M + ++ ALRD++ +YEN + E Y + ++ + R+N K++ + + QIQ++ I ++ N YE + + N+ + + + LQE++ ++E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ +++S
Sbjct: 97 KANRTNEKAEMQELNDRFANFIDKVRFLEQQNKILVAELEQLKGKGT----SRIGDLYEEEMRELRRQLDQVTNAKDRVEVDRDNLADDLQRLREKL------------------------QDEMIQ---------------KEEAEG---NLQSFRQDVDNASLARIDLERKVESLQEEIVFLKKLHDEEIRELQLQIQESHIQVDMDVSKPDLTAALRDVRQQYENVAAKNLSDAEDWYKSKFADLSEAANRNNDALRQAKQDANDYRRQIQTLTCEIDAMKGSNESYERQMREMEENFAGEAANYQDTIQRLQEEIHNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITVPVHSFSSMS 422
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: vim (vimentin [Source:NCBI gene;Acc:496727]) HSP 1 Score: 116.701 bits (291), Expect = 4.986e-27 Identity = 108/372 (29.03%), Postives = 192/372 (51.61%), Query Frame = 1
Query: 481 KKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKG-GTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLS 1593
K R EK ++Q+LN+RFA++I+K RFLE QNK L E+E+LKG GT S+I ++YE E+ +LR +++ +K +E D+L ++ LR++L + E+++ KEE + +L+ RQD + +LA + LE +++SL+E + F K++HD E++EL + +M + ++ ALRD++ +YEN + E Y + ++ + R+N K++ + + QIQ++ I ++ N YE + + N+ + + + LQE++ ++E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ +++S
Sbjct: 99 KANRTNEKAEMQELNDRFANFIDKVRFLEQQNKILVAELEQLKGKGT----SRIGDLYEEEMRELRRQLDQVTNAKDRVEVDRDNLADDLQRLREKL------------------------QDEMIQ---------------KEEAEG---NLQSFRQDVDNASLARIDLERKVESLQEEIVFLKKLHDEEIRELQLQIQESHIQVDMDVSKPDLTAALRDVRQQYENVAAKNLSDAEDWYKSKFADLSEAANRNNDALRQAKQDANDYRRQIQTLTCEIDAMKGSNESYERQMREMEENFAGEAANYQDTIQRLQEEIHNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITVPVHSFSSMS 424
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: timm13 (translocase of inner mitochondrial membrane 13 homolog [Source:NCBI gene;Acc:734099]) HSP 1 Score: 117.472 bits (293), Expect = 6.934e-27 Identity = 144/583 (24.70%), Postives = 273/583 (46.83%), Query Frame = 1
Query: 439 RGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRK--------------RLMMLEDINSQYKSTIDKQRKDISGFEGELVELRR--FKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYR---DPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQ-NA------EYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISL-CAKGKITGKGREIEI--DDASWGVGNNVVTTLCDSEGAEKAA 2100
RG S L + + R QEK +L+ LN+R A YI++ R LE +N +L +I + + T ++ S IK +YE E+ R +++E+ + +A L+ ++ ++D+L K R+ LE + + ++ + + E E+ +LR K V K++ E +TL +R D+ E+ +QSL+E ++F K I++ E +E R + + + + S++ +AL +++ +++ ++ K+ELE +Y ++ I+ S ++ +EE + + +I+++ +++ L+ Q NA E E L++ R Y + S E ++ +++Q+ LTE Q LLD KL L++EI AY KLLE EE R+ S + ++ + S+ + ++R+ T + + + + G+ISI E DL G + L+N K +SL +KR + G E +I + + K L AG+ + + A + I + + ++WG G+N+ T L ++E E A
Sbjct: 19 RGTSTPL----SPTRISRLQEKEELRHLNDRLAVYIDRVRSLELENDRLMVKISEKEEVTTREVSGIKNLYESELADARKVLDETARERARLQIELGKFRSDLDELTKNYKKKDADLSTAQGRIRDLEALFHRSEAELGTALGEKRSLEAEVADLRAQLSKAEDAHAVAKKQLEKETL------MRVDF----------ENRIQSLQEEMDFRKNIYEEESRETRKRHERRIVEVDRGHQCDYDSKLAQALDELRKQHDEQVKMYKEELEQTYQAKLDNIKRSSDHNDKAANTAREELTEARMRIETLSYQLSGLQKQANAAEDRIRELEQLLSSDRDKYRKLLDSKEKEMAEMRDQMQQQ-------LTEYQELLDVKLALDMEINAYRKLLEGEEERLKLSPSPQSRVT--------------------------------VSRATSSSSSATRTSRSKRKRTGFTRFHLSQQASATGSISIEEIDLEGKYVHLKNNSDKDQSLGNWRLKRKI-GEEEEIVYKFTPKYVLKAGQSVKIYSADAGVAHSPPSILVWKNQSTWGTGSNIRTYLVNTEEEEVAV 541
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: timm13 (translocase of inner mitochondrial membrane 13 homolog [Source:NCBI gene;Acc:734099]) HSP 1 Score: 114.005 bits (284), Expect = 1.127e-25 Identity = 146/587 (24.87%), Postives = 272/587 (46.34%), Query Frame = 1
Query: 439 RGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRK--------------RLMMLEDINSQYKSTIDKQRKDISGFEGELVELRR--FKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYR---DPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQ-NA------EYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKG----NISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISL-CAKGKITGKGREIEI--DDASWGVGNNVVTTLCDSEGAEKAA 2100
RG S L + + R QEK +L+ LN+R A YI++ R LE +N +L +I + + T ++ S IK +YE E+ R +++E+ + +A L+ ++ ++D+L K R+ LE + + ++ + + E E+ +LR K V K++ E +TL +R D+ E+ +QSL+E ++F K I++ E +E R + + + + S++ +AL +++ +++ ++ K+ELE +Y ++ I+ S ++ +EE + + +I+++ +++ L+ Q NA E E L++ R Y + S E ++ +++Q+ LTE Q LLD KL L++EI AY KLLE EE R+ S + ++ + + R+ G + R T Q +F + + +ISI E DL G + L+N K +SL +KR + G E +I + + K L AG+ + + A + I + + ++WG G+N+ T L ++E E A
Sbjct: 17 RGTSTPL----SPTRISRLQEKEELRHLNDRLAVYIDRVRSLELENDRLMVKISEKEEVTTREVSGIKNLYESELADARKVLDETARERARLQIELGKFRSDLDELTKNYKKKDADLSTAQGRIRDLEALFHRSEAELGTALGEKRSLEAEVADLRAQLSKAEDAHAVAKKQLEKETL------MRVDF----------ENRIQSLQEEMDFRKNIYEEESRETRKRHERRIVEVDRGHQCDYDSKLAQALDELRKQHDEQVKMYKEELEQTYQAKLDNIKRSSDHNDKAANTAREELTEARMRIETLSYQLSGLQKQANAAEDRIRELEQLLSSDRDKYRKLLDSKEKEMAEMRDQMQQQ-------LTEYQELLDVKLALDMEINAYRKLLEGEEERLKLSPSPQSRVT-----------------VSRATSSSSSATRTSRSKRKRVEEEYEEGGGSSRTVTSGQGSSTRFHLSQQASATGSISIEEIDLEGKYVHLKNNSDKDQSLGNWRLKRKI-GEEEEIVYKFTPKYVLKAGQSVKIYSADAGVAHSPPSILVWKNQSTWGTGSNIRTYLVNTEEEEVAV 558
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Vim (vimentin [Source:MGI Symbol;Acc:MGI:98932]) HSP 1 Score: 125.946 bits (315), Expect = 1.673e-30 Identity = 132/436 (30.28%), Postives = 223/436 (51.15%), Query Frame = 1
Query: 304 ITTSRSYYKPIS--QPRNNLKDLQKTSGMSYSAQSNSQQGLSNIPLIR--GDSV--ALQSGV-TSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRI-------ADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1569
+TTS Y S +P + + G +Y +S++ + S++P +R DSV +L + T K R EK +LQ+LN+RFA+YI+K RFLE QNK L E+E+LKG Q S++ ++YE E+ +LR V++ KA +E + D+L +I LR++L + E+++ +EE ++ L+ RQD + +LA L LE +++SL+E + F K++HD E++EL + ++ + ++ ALRD++ +YE+ QE E Y + ++ + R+N K+E++ + Q+QS+ + LE Q E E N ANY++T + LQ+++ ++E+ L E Q LL+ K+ L++EIA Y KLLE EESR++
Sbjct: 31 VTTSTRTYSLGSALRPSTSRSLYSSSPGGAYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKG---QGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL------------------------QEEMLQ---------------REEAEST---LQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDT-------IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLP 414
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Vim (vimentin [Source:MGI Symbol;Acc:MGI:98932]) HSP 1 Score: 126.331 bits (316), Expect = 2.707e-30 Identity = 132/436 (30.28%), Postives = 223/436 (51.15%), Query Frame = 1
Query: 304 ITTSRSYYKPIS--QPRNNLKDLQKTSGMSYSAQSNSQQGLSNIPLIR--GDSV--ALQSGV-TSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRI-------ADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1569
+TTS Y S +P + + G +Y +S++ + S++P +R DSV +L + T K R EK +LQ+LN+RFA+YI+K RFLE QNK L E+E+LKG Q S++ ++YE E+ +LR V++ KA +E + D+L +I LR++L + E+++ +EE ++ L+ RQD + +LA L LE +++SL+E + F K++HD E++EL + ++ + ++ ALRD++ +YE+ QE E Y + ++ + R+N K+E++ + Q+QS+ + LE Q E E N ANY++T + LQ+++ ++E+ L E Q LL+ K+ L++EIA Y KLLE EESR++
Sbjct: 31 VTTSTRTYSLGSALRPSTSRSLYSSSPGGAYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKG---QGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL------------------------QEEMLQ---------------REEAEST---LQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDT-------IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLP 414
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Gfap (glial fibrillary acidic protein [Source:MGI Symbol;Acc:MGI:95697]) HSP 1 Score: 103.219 bits (256), Expect = 6.368e-23 Identity = 103/372 (27.69%), Postives = 184/372 (49.46%), Query Frame = 1
Query: 454 ALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1569
AL +G K+ RA E+ ++ +LN+RFASYIEK RFLE QNK LA E+ +L+ ++ +K+ ++Y+ E+ +LR +++ + A LE + D+ ++ LR++L ++ N + ++ E L R +E +E R DL++ +++SL+E ++F ++I++ EV+EL + M + ++ ALR+I+T+YE T QE E Y + ++ + +R+ K E + + Q+Q++ + L N E + + S + L L+E+ ++E+ L E Q LL+ KL L++EIA Y KLLE EE+R+
Sbjct: 54 ALNAG---FKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRA---KEPTKLADVYQAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKLQ--DETNLRLEA------------ENNLAAYR-----------QEADEATLARVDLER-----------------KVESLEEEIQFLRKIYEEEVRELREQLAQQQVHVEMDVAKPDLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIP 377
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Gfap (glial fibrillary acidic protein [Source:MGI Symbol;Acc:MGI:95697]) HSP 1 Score: 102.449 bits (254), Expect = 1.145e-22 Identity = 103/372 (27.69%), Postives = 184/372 (49.46%), Query Frame = 1
Query: 454 ALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1569
AL +G K+ RA E+ ++ +LN+RFASYIEK RFLE QNK LA E+ +L+ ++ +K+ ++Y+ E+ +LR +++ + A LE + D+ ++ LR++L ++ N + ++ E L R +E +E R DL++ +++SL+E ++F ++I++ EV+EL + M + ++ ALR+I+T+YE T QE E Y + ++ + +R+ K E + + Q+Q++ + L N E + + S + L L+E+ ++E+ L E Q LL+ KL L++EIA Y KLLE EE+R+
Sbjct: 54 ALNAG---FKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRA---KEPTKLADVYQAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKLQ--DETNLRLEA------------ENNLAAYR-----------QEADEATLARVDLER-----------------KVESLEEEIQFLRKIYEEEVRELREQLAQQQVHVEMDVAKPDLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIP 377
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Des (desmin [Source:MGI Symbol;Acc:MGI:94885]) HSP 1 Score: 102.064 bits (253), Expect = 2.388e-22 Identity = 106/360 (29.44%), Postives = 174/360 (48.33%), Query Frame = 1
Query: 490 RAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1569
R EK +LQ+LN+RFA+YIEK RFLE QN LA E+ +LKG ++ +++ E+YE E+ +LR V +A ++ + D+L IDDL++ L+ E ++LR EE + ++L R D + LA + LE ++SL E + F K++H+ E++EL + M + ++ ALRDI+ +YE E E Y ++ ++ + ++N K+E + QIQS I L+ N + + + + + L+E++ + E+ L E Q LL+ K+ L++EIA Y KLLE EESR+N
Sbjct: 104 RTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKG---REPTRVAELYEEEMRELRRQVEVLTNQRARVDVERDNL---IDDLQRLKAKLQ----------------------EEIQLR--------------EEAE---NNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEANGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP 418
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|Q01240|NF60_DORPE (60 kDa neurofilament protein OS=Doryteuthis pealeii OX=1051067 PE=2 SV=1) HSP 1 Score: 250.366 bits (638), Expect = 2.241e-73 Identity = 157/369 (42.55%), Postives = 240/369 (65.04%), Query Frame = 1
Query: 463 SGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQY---KSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV 1560
+GV +K R +EK+D++DLNERFA+YIEK RFLEAQNK+LA E+E+LK ++ S IKE+YE E+ + R L++ + K K L+ +V L ID L ++ LE+ + + + I +Q + ++ EGE+ LRR + + ++ + + D+++K+R D E + HL E+ Q+L+E LEF+K +H E+KELA +AYRD T EN +W++E+ +A+RDIQ EY+ K ++ ++EA Y L++QE RT T+ N+E T KEEN+++KS + +R+R+ADLE +NA+ E ++ + EE R EL+ +E++T + E+ L ELQ L+D KL LELEIAAY KLLE EESRV
Sbjct: 84 TGVNHVKANREREKQDMRDLNERFANYIEKVRFLEAQNKKLAGELEELKSKWGKETSAIKEMYETELEEARKLIDATNKEKITLDVRVTEL---IDQLERQQKDLEESRTYHQIDQEQIARQNQQLADLEGEISMLRRSIESLEKEKMRQSNILAKMNDEMEKMRMDLNNETINHLDAENRRQTLEEELEFQKDVHAQELKELAALAYRDTTAENREFWRNELAQAIRDIQQEYDAKCDQMRGDIEAYYNLKVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMESILKELQDLMDIKLSLELEIAAYRKLLEGEESRV 449
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|Q01241|NF70_DORPE (70 kDa neurofilament protein OS=Doryteuthis pealeii OX=1051067 PE=2 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 2.389e-72 Identity = 157/369 (42.55%), Postives = 240/369 (65.04%), Query Frame = 1
Query: 463 SGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQY---KSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV 1560
+GV +K R +EK+D++DLNERFA+YIEK RFLEAQNK+LA E+E+LK ++ S IKE+YE E+ + R L++ + K K L+ +V L ID L ++ LE+ + + + I +Q + ++ EGE+ LRR + + ++ + + D+++K+R D E + HL E+ Q+L+E LEF+K +H E+KELA +AYRD T EN +W++E+ +A+RDIQ EY+ K ++ ++EA Y L++QE RT T+ N+E T KEEN+++KS + +R+R+ADLE +NA+ E ++ + EE R EL+ +E++T + E+ L ELQ L+D KL LELEIAAY KLLE EESRV
Sbjct: 84 TGVNHVKANREREKQDMRDLNERFANYIEKVRFLEAQNKKLAGELEELKSKWGKETSAIKEMYETELEEARKLIDATNKEKITLDVRVTEL---IDQLERQQKDLEESRTYHQIDQEQIARQNQQLADLEGEISMLRRSIESLEKEKMRQSNILAKMNDEMEKMRMDLNNETINHLDAENRRQTLEEELEFQKDVHAQELKELAALAYRDTTAENREFWRNELAQAIRDIQQEYDAKCDQMRGDIEAYYNLKVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMESILKELQDLMDIKLSLELEIAAYRKLLEGEESRV 449 HSP 2 Score: 53.5286 bits (127), Expect = 5.434e-6 Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 1780 FRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKI-SFTISGKVNLNAGEKISLCAKG-KITGKGRE-IEIDDASWGVGNNVVTTLCDSEGAEKAAHYQ 2109
++RT+KG++SI E D G I LE K E+L G I R VD +NK+ ++ I V L G + + +K + +G + + ++ +WG G+NVVT L + +G +KA + Q
Sbjct: 503 YQRTSKGSVSIKEADSQGCFIALET--KKEENLTGWKIVRKVD--DNKVYTYEIPNLV-LKTGTVVKIWSKNHQAQARGDDLVSRENDTWGTGSNVVTILQNEKGEDKANYTQ 610
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|P90901|IFA1_CAEEL (Intermediate filament protein ifa-1 OS=Caenorhabditis elegans OX=6239 GN=ifa-1 PE=1 SV=2) HSP 1 Score: 233.802 bits (595), Expect = 1.707e-66 Identity = 173/556 (31.12%), Postives = 296/556 (53.24%), Query Frame = 1
Query: 460 QSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIG-TKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDA--SWGVGNNVVTTLCDSEGAEKAAHYQEVS 2118
Q+ ++++ R +EK+++ DLN+R ASYIEK RFLEAQN++LA +++ L+ +D I+ +YE E+ + L++E+ K + +E Q+ ++ E+ ++R++L Q ++ ID +S E E+ L+R +V + K+E + L +L++ R D ++E L + ++++Q+L E ++F +++HD E+KEL T+A RD T EN ++++E+ A+RDI+ EY+ + ++E+ Y L++QEI+T R N+E + KEE R+++Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+ ++E + ELQ LLD K L+ EIA Y K+LE EE+R A L Q + + + + ET QS F+R+ KGN+SI E G I+L+N K E++ +KR +DG + +T+ L AG+ + + A+ + + + DA S+G GNNV T L + EG E+A H Q S
Sbjct: 56 QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENR--------AGLKQLVE-------------------------QVVKTHAITQETDTETMRVVKGETASRQS----FQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRAGKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQRQS 573
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|P90900|IFA4_CAEEL (Intermediate filament protein ifa-4 OS=Caenorhabditis elegans OX=6239 GN=ifa-4 PE=1 SV=3) HSP 1 Score: 216.853 bits (551), Expect = 2.177e-60 Identity = 161/553 (29.11%), Postives = 286/553 (51.72%), Query Frame = 1
Query: 466 GVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDA--SWGVGNNVVTTLCDSEGAEKAAHYQEVS 2118
+++++ R +EK+++ +LN+R ASYIEK RFLEAQN+++ ++ L+G D++ +K +YE E+ + L+ +S+K +A LE Q+ L E+++ R +L E + +D + E E+ L+R + K E + D L R E+E L + ++++Q+L E +F ++IHD+E+ +L +A RD T EN Y+++E+ A+R+I++EY++ + ++E+ Y L++QEI T +R+ +E + +EE R+++ + MR ++ADLE +N E + ++ EE RS E L + + E + + ELQ L+D K L+ EI Y K+L+ EE+R A L Q + + + + ETT + S + R+ KGNI+I E + G I+LENI + E++ ++R + G + +I FT + L A + + + A+G+ + + D S+G GN+VVTTL + EG ++A+H Q S
Sbjct: 59 AASAIRESRTREKKEMSELNDRLASYIEKVRFLEAQNRKMEKDLNLLRGKWGHDSTSVKVMYETELRSAKDLIADSDKERAQLEDQIKKLVEELNNYRNKLHEAERGADVTRKELDNVLGRLGALEAEIELLKRRISLMEESIGHLKRENHRMIDSLHHARNAVEQETLNRIDYQNQVQTLLEECDFIRRIHDSEIHDLLAMASRDTTVENREYFKNELSSAIREIRSEYDHVSNTTRTDIESWYKLKVQEIHTQNSRNCLEQNYAREEVKRLRTTLGDMRGKMADLEGRNLLLEKQIEDLNYQMEEDMRSYEQSLNDKDTSINKLRDESKILMVELQMLIDTKQTLDAEIVIYRKMLDGEENR--------AGLRQLV-------------------------EQVVKTTSIHQTKEIESLRVLKGETTSHSS----YSRSAKGNIAIQEAEPSGKYIVLENISRRDENIGDWKLRRKIAG-KREIVFTFPREFTLRAQKSVKIFARGQGVHSPPDSLVYDLEDSFGTGNDVVTTLYNKEGEDRASHSQRAS 573
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|O02365|IFA2_CAEEL (Intermediate filament protein ifa-2 OS=Caenorhabditis elegans OX=6239 GN=mua-6 PE=1 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 1.018e-56 Identity = 165/556 (29.68%), Postives = 289/556 (51.98%), Query Frame = 1
Query: 460 QSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIG-TKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEI--DDASWGVGNNVVTTLCDSEGAEKAAHYQEVS 2118
Q+ ++++ R +EK+++ +LN+R ASYIEK RFL+AQN++L +++ L+G + +K +YE+EI +V ++ K E ++ L+ ++D+LRK+ + ++ + ID +S E E+ L+R +V + K+E L +L+++R + ++E L + +++++++ E ++F K+ +TE+KEL A RD T EN Y+++E+ A+RDI+ EY+ + G + ++E+ Y L++QEI T R N E + KEE R+++Q +R +++DLE +N E + ++ E+ QRS E L Q+ ++E + ELQ LLD K L+ E+ Y ++LE N G+G L + + TS+ T R S R ++R+ KGN++I ET G +ILEN K E L +KR +DG + +I FT L+ + + + A+G+ E+ I D ++GVG NV T L +++G E+A H Q S
Sbjct: 58 QNAASTIRDNREREKKEIMELNDRLASYIEKVRFLDAQNRKLDADLKMLQGRFGKSTGSVKVMYEMEITTATNVVKQTGKDHGETEKEIRKLQDQLDELRKKFEEAQRGRAEDRLKIDDLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVRIELDQETLLRIDNQNKVKTILEEIDFMKRGFETELKELQAQAARDTTSENREYFKNELANAMRDIRAEYDQIMNGNRNDMESWYQLRVQEINTQSNRQNAENNYQKEEVKRLRNQTSELRQKLSDLESRNLLLEKQIEDLNYQLEDDQRSYEAALNDKDAQIRKLREECQALMVELQMLLDTKQTLDGELKVYRQMLEG-----NSEGNGLRQLVEKVVRTSAINEEADTE--------------------------------TMRVVKGEHSSRTSYQRSAKGNVAIKETSPEGKFVILENTHRAKEEPLGDWKLKRKIDG-KREIVFTFPSDYILHPFQSVKIFARGQGIANPPEVLIFEGDETFGVGANVQTILYNNKGEERATHIQRQS 575
BLAST of Intermediate filament protein vs. TrEMBL
Match: A0A267FSC2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig010052g3 PE=3 SV=1) HSP 1 Score: 334.724 bits (857), Expect = 9.787e-102 Identity = 226/554 (40.79%), Postives = 335/554 (60.47%), Query Frame = 1
Query: 469 VTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQY---KSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAG--EKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEV 2115
V +M GR +EK+D+Q+LNERFA+YIEK RFLEAQNK+L+NE+++LK ++ ++K+ YE E+ QLR L+++SEK KA E ++ SLE ++++L+ ++L++ N Q+ + TIDK + ++ ++GE+ LRR T + +++++E+K LRD++ +LR D + E L H+ E+E QSL+E LEF KQIH++E+KELA +AYRD T EN +W++EM +AL +IQ EY+NK+ ++ E+E+ Y +++QE RT+ TRDN+E +H +EEN RIK Q+ R+RI +LE +NA+ E L +R EE +R E++ L+ L TQ L L ELQ+L+D KL LELEIAAY KLLE EE+R+N +SQ S S A G G S T YQ RT KGN+SI E G I+LEN G K E + G + R +D I FT+ V L G + I + A+G ++E ++SWGVG N+ T+L ++EG E+A H Q+
Sbjct: 72 VNNMLNGREKEKKDMQELNERFANYIEKVRFLEAQNKKLSNELQQLKDRWGKETERVKQTYETELAQLRKLLDDSEKQKAEAEVRISSLEDQLNELQ---VLLDEANRQHQVDRETIDKLNQQLADYDGEISLLRRRVATFDEERSRDRKEIKRLRDEVNRLRGDLDAETLNHINAENEAQSLREQLEFMKQIHESELKELAALAYRDTTSENREFWKNEMAQALHEIQREYDNKMDVMRSEIESQYSMKVQEARTTNTRDNMELSHLREENKRIKGQMTDARNRIPELEARNAQLERELEELRREMEEAERECEMEKGRLRTDLANTQATLEEYLKELQTLMDMKLSLELEIAAYRKLLEGEETRINQHHRTQELMSQKSSTVESRSFAVEQQAMHQGQNKQQMSLIKGEMSAK----------------TTYQ-------RTAKGNVSIQECSADGKYILLENTGKKKEDISGWRLLRNIDNGRQVIKFTVPNGVVLGDGPHKNIRIWARGLKPPGSDDLEAAESSWGVGANINTSLYNTEGEERATHTQKT 599
BLAST of Intermediate filament protein vs. TrEMBL
Match: W0GAA8 (Intermediate filament b-like protein OS=Macrostomum lignano OX=282301 GN=if1 PE=2 SV=1) HSP 1 Score: 334.339 bits (856), Expect = 1.432e-101 Identity = 226/554 (40.79%), Postives = 335/554 (60.47%), Query Frame = 1
Query: 469 VTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQY---KSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAG--EKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEV 2115
V +M GR +EK+D+Q+LNERFA+YIEK RFLEAQNK+L+NE+++LK ++ ++K+ YE E+ QLR L+++SEK KA E ++ SLE ++++L+ ++L++ N Q+ + TIDK + ++ ++GE+ LRR T + +++++E+K LRD++ +LR D + E L H+ E+E QSL+E LEF KQIH++E+KELA +AYRD T EN +W++EM +AL +IQ EY+NK+ ++ E+E+ Y +++QE RT+ TRDN+E +H +EEN RIK Q+ R+RI +LE +NA+ E L +R EE +R E++ L+ L TQ L L ELQ+L+D KL LELEIAAY KLLE EE+R+N +SQ S S A G G S T YQ RT KGN+SI E G I+LEN G K E + G + R +D I FT+ V L G + I + A+G ++E ++SWGVG N+ T+L ++EG E+A H Q+
Sbjct: 72 VNNMLNGREKEKKDMQELNERFANYIEKVRFLEAQNKKLSNELQQLKDRWGKETERVKQTYETELAQLRKLLDDSEKQKAEAEVRISSLEDQLNELQ---VLLDEANRQHQVDRETIDKLNQQLADYDGEISLLRRRVATFDEERSRDQKEIKRLRDEVNRLRGDLDAETLNHINAENEAQSLREQLEFMKQIHESELKELAALAYRDTTSENREFWKNEMAQALHEIQREYDNKMDVMRSEIESQYSMKVQEARTTNTRDNMELSHLREENKRIKGQMTDARNRIPELEARNAQLERELEELRREMEEAERECEMEKGRLRTDLANTQATLEEYLKELQTLMDMKLSLELEIAAYRKLLEGEETRINQHHRTQELMSQKSSTVESRSFAVEQQAMHQGQNKQQMSLIKGEMSAK----------------TTYQ-------RTAKGNVSIQECSADGKYILLENTGKKKEDISGWRLLRNIDNGRQVIKFTVPNGVVLGDGPHKNIRIWARGLKPPGSDDLEAAESSWGVGANINTSLYNTEGEERATHTQKT 599
BLAST of Intermediate filament protein vs. TrEMBL
Match: A0A267GC02 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015143g3 PE=3 SV=1) HSP 1 Score: 319.316 bits (817), Expect = 1.477e-95 Identity = 215/554 (38.81%), Postives = 324/554 (58.48%), Query Frame = 1
Query: 469 VTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQY---KSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEK--ISLCAKG-KITGKGR-EIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQ 2109
V+SM GR +EKRD+Q+LNER A YIEK RFLEAQNK+L+NE+++LK ++ KIK YE E+ QLR L+ ++EK KA E ++ SLE ++++L+ ++L++ N + + TIDK + ++ ++GE+ LRR + +++ E+K LRDD+ +LR D + E L H+ E+ QSL+E L+F KQ+H++E+KELA +AYRD T EN +W++EM +AL DIQ EYE KL ++ E+EA Y +++QE RT+ TRDN+E H +EE+ RIK Q+ R+RI +LE +NA+ E L +R EE +R E+ L+ L + L + ELQ L+DAKL LELEI AY KLLE EE V + T++Q S + + A G S + ++RT KGN+SI E G ++LEN G K E + G + R +D + + +T+ L+ G++ + + A+G + G G ++E + SWGVG N+VT+L + EG E+A H Q
Sbjct: 92 VSSMLTGREKEKRDMQELNERLAGYIEKVRFLEAQNKKLSNELQQLKDRWGKETEKIKLTYETELQQLRKLLEDAEKHKAEAEVRISSLEDQLNELQ---VLLDEANRLHQVDRETIDKLNQQMADYDGEISLLRRRVAAFDEERARDQREIKRLRDDVSRLRTDLDTETLNHINAENAAQSLREELDFLKQVHESELKELAILAYRDTTNENREFWRNEMSQALHDIQREYEVKLDSMRSEIEAQYSVKVQEARTTNTRDNLELAHLREESKRIKGQMTDARNRIPELEARNAQLERELEELRREMEEAERECEMTKSQLRADLASSNATLEEYMRELQVLMDAKLSLELEIHAYRKLLEGEE--VRINQRAQETITQRSSTVEKTSVSVEQQQLPSPAAAQQMNLVKGEM-----------------------SAKTTYQRTAKGNVSIQECSPDGKFVLLENTGKKKEDIGGWKLSRNIDNNRQTVRYTVPMGTVLDDGQRKTVKIWARGHRPLGSGSGDLEAGEPSWGVGANIVTSLYNMEGEERATHNQ 617
BLAST of Intermediate filament protein vs. TrEMBL
Match: A0A267EDW2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015143g2 PE=3 SV=1) HSP 1 Score: 318.931 bits (816), Expect = 1.921e-95 Identity = 215/554 (38.81%), Postives = 323/554 (58.30%), Query Frame = 1
Query: 469 VTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQY---KSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEK--ISLCAKG-KITGKGR-EIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQ 2109
V+SM GR +EKRD+Q+LNER A YIEK RFLEAQNK+L+NE+++LK ++ KIK YE E+ QLR L+ ++EK KA E ++ SLE ++++L+ ++L++ N + + TIDK + ++ ++GE+ LRR + +++ E K LRDD+ +LR D + E L H+ E+ QSL+E L+F KQ+H++E+KELA +AYRD T EN +W++EM +AL DIQ EYE KL ++ E+EA Y +++QE RT+ TRDN+E H +EE+ RIK Q+ R+RI +LE +NA+ E L +R EE +R E+ L+ L + L + ELQ L+DAKL LELEI AY KLLE EE V + T++Q S + + A G S + ++RT KGN+SI E G ++LEN G K E + G + R +D + + +T+ L+ G++ + + A+G + G G ++E + SWGVG N+VT+L + EG E+A H Q
Sbjct: 92 VSSMLTGREKEKRDMQELNERLAGYIEKVRFLEAQNKKLSNELQQLKDRWGKETEKIKLTYETELQQLRKLLEDAEKHKAEAEVRISSLEDQLNELQ---VLLDEANRMHQVDRETIDKLNQQMADYDGEISLLRRRVAAFDEERARDQRETKRLRDDVSRLRTDLDTETLNHINAENAAQSLREELDFLKQVHESELKELAILAYRDTTNENREFWRNEMSQALHDIQREYEVKLDSMRSEIEAQYSVKVQEARTTNTRDNLELAHLREESKRIKGQMTDARNRIPELEARNAQLERELEELRREMEEAERECEMTKSQLRADLASSNATLEEYMRELQVLMDAKLSLELEIHAYRKLLEGEE--VRINQRAQETITQRSSTVEKTSVSVEQQQLPSPAAAQQMNLVKGEM-----------------------SAKTTYQRTAKGNVSIQECSPDGKFVLLENTGKKKEDIGGWKLSRNIDNNRQTVRYTVPMGTVLDDGQRKTVKIWARGHRPLGSGSGDLEAGETSWGVGANIVTSLYNMEGEERATHNQ 617
BLAST of Intermediate filament protein vs. TrEMBL
Match: O97339 (Cytoplasmic intermediate filament protein OS=Phascolion strombus OX=74861 PE=2 SV=1) HSP 1 Score: 302.368 bits (773), Expect = 2.507e-89 Identity = 202/559 (36.14%), Postives = 315/559 (56.35%), Query Frame = 1
Query: 463 SGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV-------NFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKG-REIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEV 2115
+GV S+K R +EK+D+QDLNERFA+YIEK RFLEAQN++LA E+++LK ++ + +K +Y+ E+++ R L++++EK KA LE + SLE +ID++R L N + + +++Q + IS + E+ L + +D +++K+E+ L+D L K R D + E L H+ E+ Q+L+E LEF K +H+ E+KELA +AYRD T EN +W+SEM ALR+IQ Y+ ++ ++ ELE+ Y +++QE RT +R N+ET H KE +++ Q+ +++SR+++LE +NA E ++R EE +R E + + L L Q EL L ELQ L+D KLGLELEIAAY KLLE EE+RV N G+ + ++++S S M+ + T ++R+ KG I+I E G I +EN G + E L+G I R VDG +K F + +L + + AKG G +IE + SWG+G N+ T L + G ++A H Q+
Sbjct: 80 TGVASIKTSRDREKKDMQDLNERFANYIEKVRFLEAQNRKLAQELDQLKQKWGKETAAVKAMYQAELDEARKLLDDAEKEKARLEIRTASLEEQIDEIRASLDDANAQNDEMRDRLERQNQQISEYVSEISVLTKRMQQLESDRDRDKKEIGRLQDSLNKARHDLDNETLGHIDAENRRQTLEEELEFLKNVHEQELKELAALAYRDTTVENREFWKSEMSSALREIQETYDEEMDAMRGELESYYNMKIQEFRTGASRQNMETVHAKETTKKMRDQLSALQSRLSELEARNASLEAENASLRQQLEEREREWEEERMELTNNLNKLQAELEAVLKELQDLIDTKLGLELEIAAYRKLLEGEENRVGLKQIVLNLVSGGHVSTTEYVSH----------------------------DERSGGQSQVVKGEMSAKTT---------YQRSAKGPITICEMQCCGKYICVENTGRRNEQLDGWKIARTVDGRTDK-RFCHTSWFHLCTRPQGKIWAKGSAQNPGPNDIESNQNSWGIGANITTKLVNLSGEDRATHVQKT 600
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: vim (vimentin [Source:NCBI gene;Acc:103044141]) HSP 1 Score: 116.701 bits (291), Expect = 2.436e-27 Identity = 122/409 (29.83%), Postives = 202/409 (49.39%), Query Frame = 1
Query: 370 KTSGMSYSAQSNS-------QQGLSNIPLIRGDSVALQSGV-TSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKG-GTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1569
+++ M+YSA S L + P R D AL + T K R EK ++Q LN+RFASYIEK RFLE QNK L+ E+E L+G GT S++ ++YE E+ +LR V++ KA +E + D+L +I LR++L E+I QR+D ++L RQD + +LA L LE +L+SL+E + F K++HD E+ EL + + +M + ++ ALRD++++YE T QE E Y + ++ + R + K++ + + Q+ ++ + L+ N E + + ++ + ++ L++ + + E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ F
Sbjct: 38 RSTRMTYSASSAPAIVSVSRSSRLRSAPSPRLD-FALSDAINTEFKANRTNEKAEMQHLNDRFASYIEKVRFLEQQNKSLSAELELLRGKGT----SRVGDLYEEEMRELRLQVDQLIGDKARVEVERDNLGEDIQRLREKLQ--EEI---------IQREDAE-------------------------------NNLHGFRQDVDNASLARLDLERKLESLQEEIIFLKKLHDEEIAELQAQIHDQHVQIDMDVAKPDLTAALRDVRSQYETLATKNIQEAEDWYKSKFTDLSDAAARSSEAIRLAKQDANEYRRQVHALTCEVDALKGTNESLERQMRELEDSFGMESSGYQDTIVRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRLCFP 399
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: vim (vimentin [Source:NCBI gene;Acc:103044141]) HSP 1 Score: 114.775 bits (286), Expect = 1.133e-26 Identity = 121/406 (29.80%), Postives = 201/406 (49.51%), Query Frame = 1
Query: 370 KTSGMSYSAQSNS-------QQGLSNIPLIRGDSVALQSGV-TSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKG-GTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV 1560
+++ M+YSA S L + P R D AL + T K R EK ++Q LN+RFASYIEK RFLE QNK L+ E+E L+G GT S++ ++YE E+ +LR V++ KA +E + D+L +I LR++L E+I QR+D ++L RQD + +LA L LE +L+SL+E + F K++HD E+ EL + + +M + ++ ALRD++++YE T QE E Y + ++ + R + K++ + + Q+ ++ + L+ N E + + ++ + ++ L++ + + E+ L E Q LL+ K+ L++EIA Y KLLE EESR+
Sbjct: 38 RSTRMTYSASSAPAIVSVSRSSRLRSAPSPRLD-FALSDAINTEFKANRTNEKAEMQHLNDRFASYIEKVRFLEQQNKSLSAELELLRGKGT----SRVGDLYEEEMRELRLQVDQLIGDKARVEVERDNLGEDIQRLREKLQ--EEI---------IQREDAE-------------------------------NNLHGFRQDVDNASLARLDLERKLESLQEEIIFLKKLHDEEIAELQAQIHDQHVQIDMDVAKPDLTAALRDVRSQYETLATKNIQEAEDWYKSKFTDLSDAAARSSEAIRLAKQDANEYRRQVHALTCEVDALKGTNESLERQMRELEDSFGMESSGYQDTIVRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI 396
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: gfap (glial fibrillary acidic protein [Source:NCBI gene;Acc:103035120]) HSP 1 Score: 107.457 bits (267), Expect = 2.990e-24 Identity = 107/373 (28.69%), Postives = 183/373 (49.06%), Query Frame = 1
Query: 481 KKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQF 1599
++ R EK ++ LN+RFASYIEK RFLE QNK L E+ +L+G ++ S++ +IY+ E+ +LR V+ KA LE + D+L ++ L++RL +D + Q AD N L RQD ++ A+ + LE ++++L++ + F K++H+ E+KEL ++ + ++ ALRDI+ +YE + QE E Y + ++ + R+ K+E + + QIQ++ + L N E L + + + + ++ L++++ ++E+ L E Q LL+ KL L++EIA Y KLLE EESR+ A L QF
Sbjct: 76 RETRTNEKVEMMGLNDRFASYIEKVRFLEQQNKMLVAELNQLRG---KEPSRLGDIYQEELRELRRQVDGLNAGKARLEIERDNLAADLVTLKQRL------------------QDETALR------------QEADNN------------LNGFRQDVDEAAMNRVQLERKIEALQDEINFLKKVHEEEMKELQEQLMAQQVHVDLDVSKPDLTAALRDIRVQYEAMASSNMQETEEWYRSKFADLTDAANRNAESLRQAKQEANDYRRQIQALTCDLESLRGTNESLERQLREMEERFSIETAAYQDTVVRLEDEIQTLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEESRITVPVQSFANL-QF 402
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: gfap (glial fibrillary acidic protein [Source:NCBI gene;Acc:103035120]) HSP 1 Score: 107.071 bits (266), Expect = 3.352e-24 Identity = 107/376 (28.46%), Postives = 184/376 (48.94%), Query Frame = 1
Query: 481 KKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSF 1608
++ R EK ++ LN+RFASYIEK RFLE QNK L E+ +L+G ++ S++ +IY+ E+ +LR V+ KA LE + D+L ++ L++RL +D + Q AD N L RQD ++ A+ + LE ++++L++ + F K++H+ E+KEL ++ + ++ ALRDI+ +YE + QE E Y + ++ + R+ K+E + + QIQ++ + L N E L + + + + ++ L++++ ++E+ L E Q LL+ KL L++EIA Y KLLE EESR+ A L QF +
Sbjct: 76 RETRTNEKVEMMGLNDRFASYIEKVRFLEQQNKMLVAELNQLRG---KEPSRLGDIYQEELRELRRQVDGLNAGKARLEIERDNLAADLVTLKQRL------------------QDETALR------------QEADNN------------LNGFRQDVDEAAMNRVQLERKIEALQDEINFLKKVHEEEMKELQEQLMAQQVHVDLDVSKPDLTAALRDIRVQYEAMASSNMQETEEWYRSKFADLTDAANRNAESLRQAKQEANDYRRQIQALTCDLESLRGTNESLERQLREMEERFSIETAAYQDTVVRLEDEIQTLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEESRITVPVQSFANL-QFRDY 405
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: desmb (desmin [Source:NCBI gene;Acc:103039642]) HSP 1 Score: 106.686 bits (265), Expect = 5.590e-24 Identity = 108/369 (29.27%), Postives = 178/369 (48.24%), Query Frame = 1
Query: 490 RAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTL-RDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLS 1593
R EK +LQ LN+RFASYIEK RFLE QN+ L E+E+L+G ++ ++I ++YE E+ +LR V ++ +E + D+L DDL+K M L++ +Q + E L R ADV+ TL R DL++ +++L+E + F K+IH+ E++EL + M + ++ ALRDI+++YE E E Y ++ ++ + T++N K E + QIQS I L+ N + ++ + + + L+ ++ + E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ +T+S
Sbjct: 108 RTNEKAELQHLNDRFASYIEKVRFLEQQNQALVVEVERLRG---REPTRIADLYEEEMRELRRQVEVVTNQRSRVEVERDNL---ADDLQKLKMRLQEEIAQREEA-----------ENSLAAFR-------ADVD-----AATLARLDLER-----------------RIETLQEEIAFLKKIHEEEIRELQAQMQETQVQIQMDMSKPDLTGALRDIRSQYEAIAAKNIAEAEDWYKSKVSDLNQAVTKNNEALKQAKLETMEFRHQIQSYTCEIDSLKGTNESLMRQMRDMEDRHGREASGFQDTITRLEAEIANMKDEMARHLREYQDLLNIKMALDVEIATYRKLLEGEESRITLPMQSYSTIS 430
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: lmnb2 (lamin B2 [Source:ZFIN;Acc:ZDB-GENE-990630-13]) HSP 1 Score: 95.5153 bits (236), Expect = 1.074e-20 Identity = 140/585 (23.93%), Postives = 263/585 (44.96%), Query Frame = 1
Query: 451 VALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSK----------IKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKL-------RQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVY---------WQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXX-------XXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEI---DDASWGVGNNVVTTLCDSEGAEKA 2097
+ ++S ++ + R QEK L +LN+R A+YIE+ R LE +L + + + K ++ Y+ E+ ++R ++++ +KA LE Q+ + E D+ R R S+Y+ + I E +L T D + EV LR+ + +L +Q E+E LA + LE+ + +L+E LEF K+IH+ E+ E + +E V ++ ++ AL +++ ++E ++ +QEL+ Q +R +K ++ T + + I+ ++ SR+ L Q + +H+L ++ E + +L + + +L ++ + L E + LLD KL L++EIAAY KLLE EESR+N S + S + TS+S + G S ++R + + S G+I I E D+ G ++ + N K + L G +KR ++ + +I++ S + L AG+ +++ A ++ +SWG G+++ T+L +S+G E A
Sbjct: 3 IEMKSLLSPTRVTRLQEKESLVELNDRLAAYIERVRSLEVDKARLLARVSMWEEEEEEQRQKSERQREATGGLRAAYDAELAEVRRALDDALGAKAALEIQLRLAQVERDEGRSRC-------SKYEQEWNVALGRIRDMEVQLCAKEASLSTASGDKEYLETEVDDLRNQVNQLEGVLVSSKQQLEEETLARVDLENRMLTLQEELEFTKRIHEQEIHESRS------KRETHVLEIDGGQQQAFEYKLSEALTELRQQHEEQVQLYRQELD-------QTMR-AKLEKSILTPEKQSLDISIREDLREATSRVGTLSSQLSAAQHDLALLQGRVRELEETLSHERDQSKRRLDESDRELAELREVMDEQLIEYEQLLDIKLALDMEIAAYRKLLEGEESRLNLSPEKGVQSSVVQTSTSASHSIRTMPGKRKRVQLEGFVDSMAQ---------------SQRSVSQHAS--------ASGSIGIKEVDMEGKSVTMVNNSEKDQPLGGWVLKRQIE-DQAEIAYKFSSRYVLKAGQTVTIWAANAGVSHNPPSDLLWKTQSSWGTGDDIRTSLLNSDGEEVA 542
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: desmb (desmin b [Source:ZFIN;Acc:ZDB-GENE-061027-102]) HSP 1 Score: 81.6481 bits (200), Expect = 1.067e-16 Identity = 109/398 (27.39%), Postives = 184/398 (46.23%), Query Frame = 1
Query: 400 SNSQQGLSNIPLIRGDSV--ALQSGVTS-MKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTK-ENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRI-------ADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV 1560
++S G S + + G SV +L + + + R EK +LQ+LN+RFA+YI+K R+LE QNK L E+ LKG ++ +++ +YE E+ +LRA V KA + + +L E+ L++RL + + + R+D+ ++ R DL++ +++SL+E + F K+IHD E++E+ E V + ++ ALRDI+ EYE E E Y + ++ + R+N K+E + Q+Q+ + I LE Q E E + ANY++T + L++ + + E+ L + Q LL K+ L++EIA Y KLLE EE+RV
Sbjct: 52 ASSLYGRSYVKAMPGQSVDFSLAEALNADYRTTRTNEKVELQELNDRFANYIDKVRYLEQQNKALLAELALLKG---REPTRVGPLYEQELRELRAQVERLTGEKARGDVERANLLDELQRLQQRLQEETAAREEAEKNLQAFRQDV-------------------------DDATLARVDLER-----------------KVESLQEEIAFLKKIHDEELREVQVQVQEQTVHVEYDVGTKPDLTAALRDIRAEYEGIAAKNVAEAEEWYKSKFLDLSEAAVRNNEALRAAKQELMDYRRQVQAQQCDIDSLKGANESLERQIREMEERFSVESANYQDT-------ITRLEDDIGNLKDEMARHLRDYQELLHVKMALDIEIATYRKLLEGEETRV 397
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010102.1 (pep scaffold:Pmarinus_7.0:GL478364:74479:82531:1 gene:ENSPMAG00000009106.1 transcript:ENSPMAT00000010102.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 82.0333 bits (201), Expect = 1.395e-16 Identity = 97/358 (27.09%), Postives = 168/358 (46.93%), Query Frame = 1
Query: 490 RAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKT--LRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESR 1557
R QEK ++ LN+RFA++I+K RFLE QNK L + L+ T +S I E++E IN LR ++ K L + ++ ++D R ++Y++ I+ + + EGE V ++ K GA ++K + E + L D++ LR + +E E E QI T V L + N+ ++ + D++ +YE + E +A Y + Q + + R++ E + E + + Q+Q R+ + L+ Q A+ E + E R + + L+E++ +QE+ + E Q L++ KL L++EI Y KLLE EESR
Sbjct: 137 RTQEKEAIKHLNDRFANFIDKVRFLEQQNKVLEAQWYALQEKTTTGSS-IDEMFEAYINGLRRQLDGLGHDKGQLNGNLGQMQAVVEDFR----------AKYEAEINNR----NAAEGEFVVVK--KDVDGAYLSKVELETRLQGLVDEINFLRSIFT----------------QELSELEAQIKHTNV--LVEI----DNSRNL-----DVDGIIADVRQQYETIAARSRAEADAFYQDKFQSLHSDSGRNDEELRMTRNEITELNRQMQRFRAEMEALKKQRAKLESAIAEAEGRGEADIREAKAAIAQLEEEIHKAKQEMARHVREYQELMNVKLALDIEIVTYRKLLEGEESR 450
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: zgc:136930 (zgc:136930 [Source:ZFIN;Acc:ZDB-GENE-060312-16]) HSP 1 Score: 78.1814 bits (191), Expect = 2.126e-15 Identity = 99/375 (26.40%), Postives = 164/375 (43.73%), Query Frame = 1
Query: 466 GVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGT-VQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVEL-RRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIR--TSKTRDNV-----ETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVN 1563
G R EK LQ LN+RF Y+EK R L+ +N L ++ + GG + + + YEV+I +LR + K LE ++D++ ++L+ + + Q +S I +KDI V L R+ L D+L L++ YE +E F+ ++ TEV ++ D K ++ L I++EYE T + E EA Y +++EI+ TSKT + + E ++ S++Q++ S+ +E A YE ++ A+Y+ + SLE+ + + L L QSLLD KL L+ EI+ Y LLE E +R +
Sbjct: 175 GTIPPMASREAEKSTLQFLNDRFGGYVEKVRLLQRENAALEAQLASITGGAPLSPDGGVTVNYEVQITELRTTIETLILDKVNLEIELDNIRATAEELKAKFEFEAGVRYQLESDISLMKKDIEFATDTRVNLTTRYTA---------------LTDELTFLKKTYE----------------EEFATFQTRLGTTEVSS-GSIIEVDTIK------SFDLMSTLSQIRSEYEVVATRNRAEAEAYYHSRIEEIQAVTSKTTEAINFAKTEIVSVTKDIQMHYSELQTLLSQSYSMEQAVASYEARASSEVASYQSSVASLEVAIETARMDLQRQ-------LLAYQSLLDVKLQLDAEISTYRNLLEGEAARCS 504
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010061.1 (pep scaffold:Pmarinus_7.0:GL478364:48285:55057:1 gene:ENSPMAG00000009104.1 transcript:ENSPMAT00000010061.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 74.7146 bits (182), Expect = 2.326e-14 Identity = 101/369 (27.37%), Postives = 170/369 (46.07%), Query Frame = 1
Query: 475 SMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYE----IDDLRKRLMMLEDINSQYKSTID--KQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKT--LRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESR 1557
S+ R QEK ++ LN+RFA++I+K RFLE QNK L + L+ T S + E++E IN LR Q+D L +E DL + ++ED ++Y++ I +R+D E V + K GA ++K + E K L++D+ +R + +E E E QI T V L + N+ ++ + D++ +YE + E +A Y + Q + + R++ E + E + + Q+Q R+ + L+ Q A+ E + E R + + L+E++ +QE+ + E Q L++ KL L++EI Y KLLE EESR
Sbjct: 130 SVLPTRTQEKEAIKHLNDRFANFIDKVRFLEQQNKVLEAQWYALQEKTTT-GSSVDEMFEAYINGLR--------------RQLDGLGHENGRANGDLGQMQAVVEDFRAKYEAEISLRTERED------EFVFAK--KDVDGAYLSKVELEAKLDGLQEDINFMRSIFA----------------QELSELEAQIKHTNV--LVEI----DNSRNL-----DVDGIIADVRHQYETIAARSRAEADAFYQDKFQSLHSDSGRNDEELRVTRNEITELNRQMQRFRAEMEALKKQRAKLESAIAEAEGRGEADIREAKAAIAQLEEEIHKAKQEMARHVREYQELMNVKLALDIEIVTYRKLLEGEESR 448
BLAST of Intermediate filament protein vs. Ensembl Nematostella
Match: EDO37225 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SGD1]) HSP 1 Score: 97.4413 bits (241), Expect = 4.351e-21 Identity = 103/396 (26.01%), Postives = 197/396 (49.75%), Query Frame = 1
Query: 463 SGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRF---KGTQGADVNKE-----------KEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMV------YWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATL 1590
S S K RAQEK +LQ LN+R A+YI++ + LE +N +L +E+ + ++ +K +YE E+ R L++E+ K KA + Q++S + D ++K+ DK+ E EL ++R+ K Q N+E + E + L+D LK + E+E L + LE+ QSL+E F+KQ++D E+ ++ + TK +V ++ M L++++ +Y++ K+E E Y + +E+R + RD+ +EEN + + + S++ LE +N +++++ + + + ++L + ++ + + AL + + L+ K+ L++EI AY KLLE EE+R+ + + L
Sbjct: 28 SPPGSAKFTRAQEKAELQHLNDRLATYIDRVKNLEQENSKLRSEVTVSRKTVEREVDSMKSLYETELADARRLLDETAKEKA--KQQIESSKNSND------------AQEFKNKFDKEAAARKKAEKELNDVRKLLHDKENQLTRRNQEALNLESVLRELQGECEELKDALKAAKYALEQETLTRVDLENRCQSLQEEQNFKKQMYDKELSDIRSQLKTVETKRVVVETDYKDKYEGLMAEKLQELREDYDSDARSFKEETELLYSSKFEELRIQRERDSEALAKLREENRNLSKSVDELSSQVHQLEAKNNALVSRVSDLQGLRAQDKEKHDNEILLRENEIAELRTSIDDALRDYEDLMGVKVALDMEITAYRKLLESEETRLEITPPASPVL 409
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: viml (vimentin [Source:NCBI gene;Acc:101163931]) HSP 1 Score: 117.857 bits (294), Expect = 9.442e-28 Identity = 121/403 (30.02%), Postives = 201/403 (49.88%), Query Frame = 1
Query: 373 TSGMSYSAQSNSQQGLSNIPLIRGDSV--ALQSGVTS-MKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKG-GTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKEL--ATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVN 1563
+S Y+ ++ + + +P + +S+ +L V S R EK +Q LN+RFASYIEK RFLE QNK L E+E+L+G GT S+I ++YE E+ +LR V++ KA +E D+L +I+ LR++L R +IS ++EE + ++ RQD + ALA L LE +++SL+E + F K++HD E+ E + + +M + ++ ALRD++ +YEN T QE E Y + ++ + R+N K+E + + Q+Q++ + L+ N E L + N+ + + L+E + + E+ L E Q LL+ K+ L++EIA Y KLLE EESR++
Sbjct: 45 SSAPVYAVKTQRLRSSAAMPRLASESLDFSLHDAVNSEFLTNRTNEKAQMQSLNDRFASYIEKVRFLEQQNKILLAELEQLRGKGT----SRIGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIERLREKL-----------------RDEIS----------------------QREEAEAT---MQSFRQDVDSAALARLDLERKIESLQEEINFLKKLHDEEMLEFQSQVQQQQQHVQVDMDVAKPDLTAALRDVRLQYENLATKNIQESEEWYKSKFADLTEAAARNNEALRMAKQEANDYRRQVQALTCEVDALKGTNESLERQLREMEENFSLESNGYQDTIGRLEEDMHNIKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIS 401
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: viml (vimentin [Source:NCBI gene;Acc:101163931]) HSP 1 Score: 116.316 bits (290), Expect = 2.554e-27 Identity = 121/401 (30.17%), Postives = 199/401 (49.63%), Query Frame = 1
Query: 373 TSGMSYSAQSNSQQGLSNIPLIRGDSV--ALQSGVTS-MKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKG-GTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKEL--ATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESR 1557
+S Y+ ++ + + +P + +S+ +L V S R EK +Q LN+RFASYIEK RFLE QNK L E+E+L+G GT S+I ++YE E+ +LR V++ KA +E D+L +I+ LR++L R +IS ++EE + ++ RQD + ALA L LE +++SL+E + F K++HD E+ E + + +M + ++ ALRD++ +YEN T QE E Y + ++ + R+N K+E + + Q+Q++ + L+ N E L + N+ + + L+E + + E+ L E Q LL+ K+ L++EIA Y KLLE EESR
Sbjct: 45 SSAPVYAVKTQRLRSSAAMPRLASESLDFSLHDAVNSEFLTNRTNEKAQMQSLNDRFASYIEKVRFLEQQNKILLAELEQLRGKGT----SRIGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIERLREKL-----------------RDEIS----------------------QREEAEAT---MQSFRQDVDSAALARLDLERKIESLQEEINFLKKLHDEEMLEFQSQVQQQQQHVQVDMDVAKPDLTAALRDVRLQYENLATKNIQESEEWYKSKFADLTEAAARNNEALRMAKQEANDYRRQVQALTCEVDALKGTNESLERQLREMEENFSLESNGYQDTIGRLEEDMHNIKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 399
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: desmb (desmin [Source:NCBI gene;Acc:101174730]) HSP 1 Score: 106.686 bits (265), Expect = 6.973e-24 Identity = 107/369 (29.00%), Postives = 182/369 (49.32%), Query Frame = 1
Query: 490 RAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTL-RDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLS 1593
R EK +LQ LN+RFASYIEK RFLE QN+ L+ E+E+L+G ++ ++I ++YE E+ +LR V ++ +E + D+L ++D L+ RL E+I Q++D E L R ADV+ TL R DL++ +++L+E + F K+IH+ E++EL T + M + ++ ALRDI+T+YE + E Y ++ ++ + +++N ++E + QIQ+ I L+ N + + + + + L+ ++ + E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ +TL+
Sbjct: 104 RTNEKAELQHLNDRFASYIEKVRFLEQQNQALSVEVERLRG---REPTRIADLYEEEMRELRRQVEILTNQRSRVEVERDNLAEDLDKLKLRLQ--EEI---------LQKEDA---ENNLAAFR-------ADVD-----AATLARLDLER-----------------RIETLQEEIAFLKKIHEEEIRELQTQMQETQVQIQMDMSKPDLTAALRDIRTQYEGIAAKNIADAEDWYKSKVSDLNQAVSKNNEALKQARQETMEFRHQIQAYTCEIDSLKGTNESLMRQMRELEDRHGCEAARFQDTIARLEAEIANMKDEMARHLREYQDLLNIKMALDVEIATYRKLLEGEESRITMPVQSYSTLT 426
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: gfap (glial fibrillary acidic protein [Source:NCBI gene;Acc:101173548]) HSP 1 Score: 105.145 bits (261), Expect = 1.444e-23 Identity = 109/370 (29.46%), Postives = 181/370 (48.92%), Query Frame = 1
Query: 481 KKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQ-------SMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1569
K+ R EK ++ LN+RFASYIEK R LE QNK L E+ +L+G ++ S++ +IY+ E+ +LR V+ KA LE + D+L ++ L++RL Q V +++ E ++L RQD ++ +L+ + LE +++SL++ + F K+IH+ E++E ++ + ++ ALRDI+ +YEN T QE E Y + ++ + R+ K+E + + QIQ ++R LE Q E E A Y++T + L+E++ ++E+ L E Q LL+ KL L++EIA Y KLLE EESR+
Sbjct: 80 KETRTNEKMEMMGLNDRFASYIEKVRMLEQQNKVLVAELNQLRG---KEPSRLGDIYQDELRELRRQVDNLTTGKARLEIERDNLAADLATLKQRL-------------------------------------QDEIVQRQEAE-----NNLNAFRQDVDEASLSRVQLERKIESLQDEINFLKKIHEEELRESQEKVLAQQVHVDLDVSKPDLTAALRDIRLQYENLATSNMQETEEWYRSKFADLTDAANRNGEALRQAKQEANEYRRQIQVLTCDLDALRGTNESLERQLREMEDRCAMETAGYQDT-------VSRLEEEIQALKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEESRITIP 397
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: gfap (glial fibrillary acidic protein [Source:NCBI gene;Acc:101173548]) HSP 1 Score: 105.145 bits (261), Expect = 1.655e-23 Identity = 111/370 (30.00%), Postives = 182/370 (49.19%), Query Frame = 1
Query: 481 KKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQ-------SMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1569
K+ R EK ++ LN+RFASYIEK R LE QNK L E+ +L+G ++ S++ +IY+ E+ +LR V+ KA LE + D+L ++ L++RL + E+V+ Q A+ N L RQD ++ +L+ + LE +++SL++ + F K+IH+ E++E ++ + ++ ALRDI+ +YEN T QE E Y + ++ + R+ K+E + + QIQ ++R LE Q E E A Y++T + L+E++ ++E+ L E Q LL+ KL L++EIA Y KLLE EESR+
Sbjct: 80 KETRTNEKMEMMGLNDRFASYIEKVRMLEQQNKVLVAELNQLRG---KEPSRLGDIYQDELRELRRQVDNLTTGKARLEIERDNLAADLATLKQRL------------------------QDEIVQ------RQEAENN------------LNAFRQDVDEASLSRVQLERKIESLQDEINFLKKIHEEELRESQEKVLAQQVHVDLDVSKPDLTAALRDIRLQYENLATSNMQETEEWYRSKFADLTDAANRNGEALRQAKQEANEYRRQIQVLTCDLDALRGTNESLERQLREMEDRCAMETAGYQDT-------VSRLEEEIQALKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEESRITIP 397
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000030598.1 (SMESG000030598.1) HSP 1 Score: 1064.68 bits (2752), Expect = 0.000e+0 Identity = 672/695 (96.69%), Postives = 673/695 (96.83%), Query Frame = 1
Query: 37 MLAIEMETSKKIAVKTTKQEVSGSGSSGGLNEQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITTSRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQGLSNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 2121
MLAIEMETSKKIAVKTTKQEVSGSGSSGGLNEQQ FGSGSFRTGSGGVQISASGAIGSSSSGGVSGTGGVGSIGGGSGAGGEGTGASTVITTSRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQG SNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLYLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS DGNATLSQFMSFT +G GG G SGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA
Sbjct: 1 MLAIEMETSKKIAVKTTKQEVSGSGSSGGLNEQQVFGSGSFRTGSGGVQISASGAIGSSSSGGVSGTGGVGSIGGGSGAGGEGTGASTVITTSRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQGSSNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLYLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSADGNATLSQFMSFT--------------SSSGAGGAGGSGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 681
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000030598.1 (SMESG000030598.1) HSP 1 Score: 1056.59 bits (2731), Expect = 0.000e+0 Identity = 672/695 (96.69%), Postives = 673/695 (96.83%), Query Frame = 1
Query: 37 MLAIEMETSKKIAVKTTKQEVSGSGSSGGLNEQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITTSRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQGLSNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 2121
MLAIEMETSKKIAVKTTKQEVSGSGSSGGLNEQQ FGSGSFRTGSGGVQISASGAIGSSSSGGVSGTGGVGSIGGGSGAGGEGTGASTVITTSRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQG SNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLYLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS DGNATLSQFMS + GGGGGSSGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA
Sbjct: 1 MLAIEMETSKKIAVKTTKQEVSGSGSSGGLNEQQVFGSGSFRTGSGGVQISASGAIGSSSSGGVSGTGGVGSIGGGSGAGGEGTGASTVITTSRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQGSSNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLYLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSADGNATLSQFMS-------------FTSSSGAGGGGGSSGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 682
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000030598.1 (SMESG000030598.1) HSP 1 Score: 1046.57 bits (2705), Expect = 0.000e+0 Identity = 670/690 (97.10%), Postives = 671/690 (97.25%), Query Frame = 1
Query: 52 METSKKIAVKTTKQEVSGSGSSGGLNEQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITTSRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQGLSNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 2121
METSKKIAVKTTKQEVSGSGSSGGLNEQQ FGSGSFRTGSGGVQISASGAIGSSSSGGVSGTGGVGSIGGGSGAGGEGTGASTVITTSRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQG SNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLYLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS DGNATLSQFMS + GAGGGGGGSSGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA
Sbjct: 1 METSKKIAVKTTKQEVSGSGSSGGLNEQQVFGSGSFRTGSGGVQISASGAIGSSSSGGVSGTGGVGSIGGGSGAGGEGTGASTVITTSRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQGSSNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLYLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSADGNATLSQFMS------------FTSSSGAGGGGGGSSGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 678
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000030596.1 (SMESG000030596.1) HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0 Identity = 365/433 (84.30%), Postives = 391/433 (90.30%), Query Frame = 1
Query: 304 ITTSRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQGLSNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFM 1602
+TT+ SY KPISQPRN+L+DLQKT+ NSQ LIRGDSVALQSGVTSMKKGRAQEKR+LQ+LNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQR DI+ FEGELVEL+RFKGTQGADV EKEEVK+L+D LKKLRQDYE+EALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMV+WQSEMGRALRDIQ EYENKLTGIKQEL++SYG QMQEI+TSKTRDNVETTHYKEENSR+KSQIQSMR RIA+LE QNAEYE NL NIR NYEETQR+L+ QL +Q+QL+GTQQELT A TELQSLLDAKLGLELEIAAYA+LLE EE RV S D + +SQFM
Sbjct: 49 VTTNHSYIKPISQPRNSLRDLQKTT-------ENSQN-----MLIRGDSVALQSGVTSMKKGRAQEKRNLQELNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRNDIAAFEGELVELKRFKGTQGADVTLEKEEVKSLKDSLKKLRQDYEREALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVFWQSEMGRALRDIQNEYENKLTGIKQELDSSYGSQMQEIQTSKTRDNVETTHYKEENSRVKSQIQSMRMRIAELERQNAEYEINLKNIRDNYEETQRNLQSQLFSMQDQLSGTQQELTAASTELQSLLDAKLGLELEIAAYARLLEIEEERVLSSADQRSVMSQFM 469 HSP 2 Score: 134.806 bits (338), Expect = 1.281e-32 Identity = 67/120 (55.83%), Postives = 92/120 (76.67%), Query Frame = 1
Query: 1762 QSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 2121
SK+M RRTT GNISIAE+D G I+LEN+G++ +SL GM IKR +DG N ++++I K++L+AGE+I++C GK TGKG+E+EI++ SWG G NV+T LCD+ G EKAA YQE+ A
Sbjct: 533 HSKKMSSRRTTTGNISIAESDESGLFIVLENMGSQTQSLSGMMIKRNIDGVANFVTYSIPKKIDLSAGERITICGHGKKTGKGKELEIEEDSWGFGENVITALCDANGEEKAALYQEIVA 652
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000030599.1 (SMESG000030599.1) HSP 1 Score: 632.484 bits (1630), Expect = 0.000e+0 Identity = 346/434 (79.72%), Postives = 394/434 (90.78%), Query Frame = 1
Query: 304 ITTSRSYYKPISQPRNNLKDLQKTSG-MSYSAQSNSQQGLSNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYXXXXXXXXXXXXXXQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFM 1602
++T+RS YKPISQ RNN KDLQ+ + +SYS QS +QQ S +PLIRGDSVALQ+G+ S+KKGRAQEK+DLQ+LNERFASYIEKARFLE QNKQL EIE+LKGGT+QD SK+KEIYEVEINQLR+L+NESEKS+APLE QV+SLEYEI DL+KRL++LEDI +QY++TIDKQR+++ FEGE+VEL+RFK T+ D KEK+E LRD++KKLRQ+YEKEALAH+TLEH+LQSL+E +EFEKQIH TEVKELATVAY++PTKENMVYWQSEMGRALRDIQTEYENKL+GIKQELEASY LQMQEIRTSKTRDNVETT YKEENSRIKSQIQSMRSRI DLEMQNAEYEHNLNNIRANYEETQRSLELQLL LQEQLTGTQQ+LT+ LTELQSLLDAKLGLELEIAAY+KLLEFEE+RVNFS DGN SQF+
Sbjct: 103 VSTTRSMYKPISQSRNNFKDLQRNAASLSYSMQSGNQQSGSVMPLIRGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLSGIKQELEASYSLQMQEIRTSKTRDNVETTQYKEENSRIKSQIQSMRSRITDLEMQNAEYEHNLNNIRANYEETQRSLELQLLNLQEQLTGTQQDLTITLTELQSLLDAKLGLELEIAAYSKLLEFEENRVNFSSDGNT--SQFI 534 HSP 2 Score: 146.362 bits (368), Expect = 3.498e-36 Identity = 75/127 (59.06%), Postives = 102/127 (80.31%), Query Frame = 1
Query: 1735 MTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEV 2115
++ E +YQ KRMKFRRTTKGNISIAE D+ G I+LEN GTK ESL GMTIKR +DG+E+ +SFTI + +L++GEK+++ AKGK TGKG+E+EI++ WG+G+ +VT+L ++EG EKA HYQE+
Sbjct: 626 LSSTEAEEYQLKRMKFRRTTKGNISIAEADINGLFIVLENNGTKFESLTGMTIKRNIDGNEDAVSFTIQNRTSLSSGEKLTIWAKGKKTGKGKELEIEEDGWGLGDTIVTSLYNAEGEEKAVHYQEI 752 The following BLAST results are available for this feature:
BLAST of Intermediate filament protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Intermediate filament protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Intermediate filament protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Intermediate filament protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30024865 ID=SMED30024865|Name=Intermediate filament protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2214bpback to top protein sequence of SMED30024865-orf-1 >SMED30024865-orf-1 ID=SMED30024865-orf-1|Name=SMED30024865-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=696bp MLAIEMETSKKIAVKTTKQEVSGSGSSGGLNEQQAFGSGSFRTGSGGVQIback to top Aliases
The feature 'Intermediate filament protein' has the following synonyms
Annotated Terms
The following terms have been associated with this transcript:
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