RNA binding protein fox-1

Overview
NameRNA binding protein fox-1
Smed IDSMED30024843
Length (bp)1626
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA binding protein fox-1 (SMED30024843) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RNA binding protein fox-1 (SMED30024843) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30024843

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30024843SMESG000033763.1 dd_Smed_v4_9461_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30024843SMESG000033763.1 dd_Smed_v4_9461_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30024843SMESG000033763.1 dd_Smed_v4_9461_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30024843SMESG000033763.1 dd_Smed_v4_9461_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30024843SMESG000033763.1 dd_Smed_v6_9461_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Human
Match: RBFOX1 (RNA binding fox-1 homolog 1 [Source:HGNC Symbol;Acc:HGNC:18222])

HSP 1 Score: 127.872 bits (320), Expect = 1.069e-33
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIE 612
            S PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIE
Sbjct:  116 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 189
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Human
Match: RBFOX1 (RNA binding fox-1 homolog 1 [Source:HGNC Symbol;Acc:HGNC:18222])

HSP 1 Score: 129.798 bits (325), Expect = 1.514e-33
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIEV
Sbjct:  114 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 188
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Human
Match: RBFOX1 (RNA binding fox-1 homolog 1 [Source:HGNC Symbol;Acc:HGNC:18222])

HSP 1 Score: 129.798 bits (325), Expect = 1.683e-33
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIEV
Sbjct:  113 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 187
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Human
Match: RBFOX2 (RNA binding fox-1 homolog 2 [Source:HGNC Symbol;Acc:HGNC:9906])

HSP 1 Score: 127.487 bits (319), Expect = 5.165e-33
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIEV
Sbjct:   88 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 162
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Human
Match: RBFOX2 (RNA binding fox-1 homolog 2 [Source:HGNC Symbol;Acc:HGNC:9906])

HSP 1 Score: 127.487 bits (319), Expect = 5.165e-33
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIEV
Sbjct:   88 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 162
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Celegans
Match: fox-1 (Sex determination protein fox-1 [Source:UniProtKB/Swiss-Prot;Acc:Q10572])

HSP 1 Score: 115.931 bits (289), Expect = 3.021e-28
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:  394 GPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            GPKRLHVSNIPFRFR+ DL+ +   FG + DVEIIFNERGSKGFGFVT     DAERAR+ L+G ++EGRKIEV
Sbjct:   92 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 165
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Celegans
Match: fox-1 (Sex determination protein fox-1 [Source:UniProtKB/Swiss-Prot;Acc:Q10572])

HSP 1 Score: 116.316 bits (290), Expect = 4.444e-28
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:  394 GPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            GPKRLHVSNIPFRFR+ DL+ +   FG + DVEIIFNERGSKGFGFVT     DAERAR+ L+G ++EGRKIEV
Sbjct:  151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Celegans
Match: fox-1 (Sex determination protein fox-1 [Source:UniProtKB/Swiss-Prot;Acc:Q10572])

HSP 1 Score: 116.701 bits (291), Expect = 5.614e-28
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:  394 GPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            GPKRLHVSNIPFRFR+ DL+ +   FG + DVEIIFNERGSKGFGFVT     DAERAR+ L+G ++EGRKIEV
Sbjct:  181 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 254
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Celegans
Match: asd-1 (RNA-binding protein ASD-1 [Source:UniProtKB/TrEMBL;Acc:G5EEW7])

HSP 1 Score: 111.309 bits (277), Expect = 2.186e-26
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:  394 GPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            GP+RLHVSNIPF++RE DL A+    G ++DVEIIFNERGSKGFGFVT  N  DA+RAR   NG  +EGR++EV
Sbjct:   73 GPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEV 146
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Celegans
Match: asd-1 (RNA-binding protein ASD-1 [Source:UniProtKB/TrEMBL;Acc:G5EEW7])

HSP 1 Score: 111.309 bits (277), Expect = 2.395e-26
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:  394 GPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            GP+RLHVSNIPF++RE DL A+    G ++DVEIIFNERGSKGFGFVT  N  DA+RAR   NG  +EGR++EV
Sbjct:   98 GPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEV 171
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0305095)

HSP 1 Score: 136.346 bits (342), Expect = 4.037e-34
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLRA+ G FGTI+DVEIIFNERGSKGFGFVTFAN+ DAERARE L+G VVEGRKIEV
Sbjct:  440 SQPKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEV 514

HSP 2 Score: 28.4906 bits (62), Expect = 4.037e-34
Identity = 20/51 (39.22%), Postives = 27/51 (52.94%), Query Frame = 2 
Query:  641 KVNHATARIMTKKKAETLQAAVK--SATNANALRSV-LARNSIGNVTLTGY 784
            +VN+ATAR+ TKK        V+   A  A A+R V + R  +G V  T Y
Sbjct:  513 EVNNATARVQTKKVTAVPNVCVQWPEAAVAAAMRGVAIQRGHVGVVGATPY 563
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0113419)

HSP 1 Score: 136.346 bits (342), Expect = 4.890e-34
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLRA+ G FGTI+DVEIIFNERGSKGFGFVTFAN+ DAERARE L+G VVEGRKIEV
Sbjct:  374 SQPKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEV 448

HSP 2 Score: 28.4906 bits (62), Expect = 4.890e-34
Identity = 20/51 (39.22%), Postives = 27/51 (52.94%), Query Frame = 2 
Query:  641 KVNHATARIMTKKKAETLQAAVK--SATNANALRSV-LARNSIGNVTLTGY 784
            +VN+ATAR+ TKK        V+   A  A A+R V + R  +G V  T Y
Sbjct:  447 EVNNATARVQTKKVTAVPNVCVQWPEAAVAAAMRGVAIQRGHVGVVGATPY 497
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0305097)

HSP 1 Score: 136.346 bits (342), Expect = 4.964e-34
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLRA+ G FGTI+DVEIIFNERGSKGFGFVTFAN+ DAERARE L+G VVEGRKIEV
Sbjct:  391 SQPKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEV 465

HSP 2 Score: 28.4906 bits (62), Expect = 4.964e-34
Identity = 20/51 (39.22%), Postives = 27/51 (52.94%), Query Frame = 2 
Query:  641 KVNHATARIMTKKKAETLQAAVK--SATNANALRSV-LARNSIGNVTLTGY 784
            +VN+ATAR+ TKK        V+   A  A A+R V + R  +G V  T Y
Sbjct:  464 EVNNATARVQTKKVTAVPNVCVQWPEAAVAAAMRGVAIQRGHVGVVGATPY 514
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0113418)

HSP 1 Score: 136.346 bits (342), Expect = 5.130e-34
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLRA+ G FGTI+DVEIIFNERGSKGFGFVTFAN+ DAERARE L+G VVEGRKIEV
Sbjct:  374 SQPKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEV 448

HSP 2 Score: 28.4906 bits (62), Expect = 5.130e-34
Identity = 20/51 (39.22%), Postives = 27/51 (52.94%), Query Frame = 2 
Query:  641 KVNHATARIMTKKKAETLQAAVK--SATNANALRSV-LARNSIGNVTLTGY 784
            +VN+ATAR+ TKK        V+   A  A A+R V + R  +G V  T Y
Sbjct:  447 EVNNATARVQTKKVTAVPNVCVQWPEAAVAAAMRGVAIQRGHVGVVGATPY 497
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0473371)

HSP 1 Score: 136.346 bits (342), Expect = 6.613e-34
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLRA+ G FGTI+DVEIIFNERGSKGFGFVTFAN+ DAERARE L+G VVEGRKIEV
Sbjct:  374 SQPKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEV 448
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Zebrafish
Match: rbfox3b (RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-GENE-091204-46])

HSP 1 Score: 127.487 bits (319), Expect = 1.388e-33
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF  + DA+RARE LNG +VEGRKIEV
Sbjct:  107 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEV 179
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Zebrafish
Match: rbfox1 (RNA binding fox-1 homolog 1 [Source:NCBI gene;Acc:449554])

HSP 1 Score: 125.176 bits (313), Expect = 1.115e-32
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF ++ DA+RARE L+G VVEGRKIEV
Sbjct:   96 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFESSADADRAREKLHGTVVEGRKIEV 168
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Zebrafish
Match: rbfox3b (RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-GENE-091204-46])

HSP 1 Score: 127.102 bits (318), Expect = 2.338e-32
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF  + DA+RARE LNG +VEGRKIEV
Sbjct:   90 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEV 162
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Zebrafish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1])

HSP 1 Score: 125.946 bits (315), Expect = 9.703e-32
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF  + DA+RARE LNG +VEGRKIEV
Sbjct:  111 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEV 183
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Zebrafish
Match: rbfox1l (RNA binding fox-1 homolog 1, like [Source:NCBI gene;Acc:407613])

HSP 1 Score: 126.716 bits (317), Expect = 1.277e-31
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV----IQVIKKFCQGQSCNSENY 669
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF +A++A+RARE LNG +VEGRKIEV     +V+ K  Q    N+  +
Sbjct:  146 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFESAVEADRAREKLNGTIVEGRKIEVNNATARVVTKKPQTPLVNAAGW 240
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Xenopus
Match: yaf2 (YY1 associated factor 2 [Source:Xenbase;Acc:XB-GENE-949941])

HSP 1 Score: 128.257 bits (321), Expect = 1.263e-32
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF  ++DA+RARE LNG +VEGRKIEV
Sbjct:   97 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSMDADRAREKLNGTIVEGRKIEV 169
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Xenopus
Match: yaf2 (YY1 associated factor 2 [Source:Xenbase;Acc:XB-GENE-949941])

HSP 1 Score: 128.642 bits (322), Expect = 2.763e-32
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF  ++DA+RARE LNG +VEGRKIEV
Sbjct:  142 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSMDADRAREKLNGTIVEGRKIEV 214
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Xenopus
Match: lsm12 (LSM12 homolog [Source:Xenbase;Acc:XB-GENE-5780031])

HSP 1 Score: 128.642 bits (322), Expect = 3.673e-32
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIEV
Sbjct:  105 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 177
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Xenopus
Match: yaf2 (YY1 associated factor 2 [Source:Xenbase;Acc:XB-GENE-949941])

HSP 1 Score: 128.642 bits (322), Expect = 3.912e-32
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF  ++DA+RARE LNG +VEGRKIEV
Sbjct:  142 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSMDADRAREKLNGTIVEGRKIEV 214
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Xenopus
Match: lsm12 (LSM12 homolog [Source:Xenbase;Acc:XB-GENE-5780031])

HSP 1 Score: 127.872 bits (320), Expect = 5.254e-32
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIEV
Sbjct:   96 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 168
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Mouse
Match: Rbfox1 (RNA binding protein, fox-1 homolog (C. elegans) 1 [Source:MGI Symbol;Acc:MGI:1926224])

HSP 1 Score: 129.028 bits (323), Expect = 3.834e-33
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIEV
Sbjct:  113 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 187
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Mouse
Match: Rbfox2 (RNA binding protein, fox-1 homolog (C. elegans) 2 [Source:MGI Symbol;Acc:MGI:1933973])

HSP 1 Score: 128.257 bits (321), Expect = 5.569e-33
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIEV
Sbjct:  131 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 205
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Mouse
Match: Rbfox3 (RNA binding protein, fox-1 homolog (C. elegans) 3 [Source:MGI Symbol;Acc:MGI:106368])

HSP 1 Score: 124.405 bits (311), Expect = 8.741e-33
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIE 612
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF  + DA+RARE LNG +VEGRKIE
Sbjct:   98 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIE 169
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Mouse
Match: Rbfox1 (RNA binding protein, fox-1 homolog (C. elegans) 1 [Source:MGI Symbol;Acc:MGI:1926224])

HSP 1 Score: 128.642 bits (322), Expect = 2.443e-32
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIEV
Sbjct:   93 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 167
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Mouse
Match: Rbfox2 (RNA binding protein, fox-1 homolog (C. elegans) 2 [Source:MGI Symbol;Acc:MGI:1933973])

HSP 1 Score: 128.257 bits (321), Expect = 2.583e-32
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIEV
Sbjct:  109 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 183
[Close]
BLAST of RNA binding protein fox-1 vs. UniProt/SwissProt
Match: sp|Q95KI0|RFOX1_MACFA (RNA binding protein fox-1 homolog 1 OS=Macaca fascicularis OX=9541 GN=RBFOX1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.027e-31
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIEV
Sbjct:  116 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 190
[Close]
BLAST of RNA binding protein fox-1 vs. UniProt/SwissProt
Match: sp|Q5NVN8|RFOX1_PONAB (RNA binding protein fox-1 homolog 1 OS=Pongo abelii OX=9601 GN=RBFOX1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.508e-31
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIEV
Sbjct:  114 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 188
[Close]
BLAST of RNA binding protein fox-1 vs. UniProt/SwissProt
Match: sp|Q9JJ43|RFOX1_MOUSE (RNA binding protein fox-1 homolog 1 OS=Mus musculus OX=10090 GN=Rbfox1 PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.978e-31
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIEV
Sbjct:  113 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 187
[Close]
BLAST of RNA binding protein fox-1 vs. UniProt/SwissProt
Match: sp|Q9NWB1|RFOX1_HUMAN (RNA binding protein fox-1 homolog 1 OS=Homo sapiens OX=9606 GN=RBFOX1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.415e-31
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  391 SGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF N+ DA+RARE L+G VVEGRKIEV
Sbjct:  114 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 188
[Close]
BLAST of RNA binding protein fox-1 vs. UniProt/SwissProt
Match: sp|A6NFN3|RFOX3_HUMAN (RNA binding protein fox-1 homolog 3 OS=Homo sapiens OX=9606 GN=RBFOX3 PE=2 SV=4)

HSP 1 Score: 125.561 bits (314), Expect = 8.391e-31
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF  + DA+RARE LNG +VEGRKIEV
Sbjct:   98 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEV 170
[Close]
BLAST of RNA binding protein fox-1 vs. TrEMBL
Match: A0A3P8LEJ5 (RRM domain-containing protein OS=Trichobilharzia regenti OX=157069 GN=TRE_LOCUS2204 PE=4 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.797e-34
Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 1 
Query:  379 NHFSSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            N  S GPKRLHVSNIPFRFREADLR LLGPFGTI+DVEIIFNERGSKGFGFVTFA   +A+RARE+LNG VVEGRKIEV
Sbjct:   12 NLVSVGPKRLHVSNIPFRFREADLRQLLGPFGTILDVEIIFNERGSKGFGFVTFATGEEADRARENLNGTVVEGRKIEV 90
[Close]
BLAST of RNA binding protein fox-1 vs. TrEMBL
Match: A0A183VNZ8 (RRM domain-containing protein OS=Trichobilharzia regenti OX=157069 PE=4 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.911e-34
Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 1 
Query:  379 NHFSSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            N  S GPKRLHVSNIPFRFREADLR LLGPFGTI+DVEIIFNERGSKGFGFVTFA   +A+RARE+LNG VVEGRKIEV
Sbjct:   12 NLVSVGPKRLHVSNIPFRFREADLRQLLGPFGTILDVEIIFNERGSKGFGFVTFATGEEADRARENLNGTVVEGRKIEV 90
[Close]
BLAST of RNA binding protein fox-1 vs. TrEMBL
Match: A0A4S2M1B6 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_003405 PE=4 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.011e-34
Identity = 67/93 (72.04%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:  388 SSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEVIQVIKKFCQGQSCNSEN 666
            ++ P+RLHVSNIPFRFREADLR+LLGP+GTI+DVEIIFNERGSKGFGFVTFANA DAERARE+LNG VV GRKIEV     +    + C+ +N
Sbjct:  129 TTSPRRLHVSNIPFRFREADLRSLLGPYGTILDVEIIFNERGSKGFGFVTFANAEDAERARENLNGRVVMGRKIEVNHATTRVLTKKRCDGQN 221
[Close]
BLAST of RNA binding protein fox-1 vs. TrEMBL
Match: A0A564ZE62 (RRM domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS14780 PE=4 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.026e-34
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:  313 GMPVSALTNSTSEPNIFNVTLQNH----------FSSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            G P +++T S S P++ +    N            S+GPKRLHVSNIPFR+READLR LLGPFGTI+DVEIIFNERGSKGFGFVTFA   +A++ARESLNG +VEGRKIE+
Sbjct:  159 GHPSTSVTTSISNPSVTSTIPGNTPVSSSSITPIASTGPKRLHVSNIPFRYREADLRQLLGPFGTILDVEIIFNERGSKGFGFVTFATPEEADKARESLNGTIVEGRKIEI 269

HSP 2 Score: 31.9574 bits (71), Expect = 2.026e-34
Identity = 16/36 (44.44%), Postives = 26/36 (72.22%), Query Frame = 2 
Query:  641 KVNHATARIMTKKKAETLQAAVKSATNANALRSVLA 748
            ++N+ATAR+MTKKK+E     +K+AT    +R+ L+
Sbjct:  268 EINNATARVMTKKKSEA-PTLMKTATTLRGIRNALS 302
[Close]
BLAST of RNA binding protein fox-1 vs. TrEMBL
Match: A0A158QBS1 (RRM domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS401 PE=4 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.233e-34
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:  313 GMPVSALTNSTSEPNIFNVTLQNH----------FSSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            G P +++T S S P++ +    N            S+GPKRLHVSNIPFR+READLR LLGPFGTI+DVEIIFNERGSKGFGFVTFA   +A++ARESLNG +VEGRKIE+
Sbjct:  253 GHPSTSVTTSISNPSVTSTIPGNTPVSSSSITPIASTGPKRLHVSNIPFRYREADLRQLLGPFGTILDVEIIFNERGSKGFGFVTFATPEEADKARESLNGTIVEGRKIEI 363

HSP 2 Score: 32.3426 bits (72), Expect = 2.233e-34
Identity = 16/36 (44.44%), Postives = 26/36 (72.22%), Query Frame = 2 
Query:  641 KVNHATARIMTKKKAETLQAAVKSATNANALRSVLA 748
            ++N+ATAR+MTKKK+E     +K+AT    +R+ L+
Sbjct:  362 EINNATARVMTKKKSEA-PTLMKTATTLRGIRNALS 396
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Cavefish
Match: rbfox1l (RNA binding protein fox-1 homolog 1-like [Source:NCBI gene;Acc:103045177])

HSP 1 Score: 129.028 bits (323), Expect = 1.777e-32
Identity = 62/95 (65.26%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV----IQVIKKFCQGQSCNSENY 669
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF NA++A+RARE LNG +VEGRKIEV     +V+ K  Q    N+  +
Sbjct:  146 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENAVEADRAREKLNGTIVEGRKIEVNNATARVVTKKPQTPLVNAAGW 240
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Cavefish
Match: rbfox3b (RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-GENE-091204-46])

HSP 1 Score: 127.102 bits (318), Expect = 4.872e-32
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF  + DA+RARE LNG +VEGRKIEV
Sbjct:  138 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSTDADRAREKLNGTIVEGRKIEV 210
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Cavefish
Match: rbfox1 (RNA binding fox-1 homolog 1 [Source:NCBI gene;Acc:449554])

HSP 1 Score: 126.716 bits (317), Expect = 6.965e-32
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF ++ DA+RARE L+G VVEGRKIEV
Sbjct:  139 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFESSADADRAREKLHGTVVEGRKIEV 211
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Cavefish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1])

HSP 1 Score: 125.946 bits (315), Expect = 8.914e-32
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF  + DA+RARE LNG +VEGRKIEV
Sbjct:  116 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEV 188
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Cavefish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1])

HSP 1 Score: 126.331 bits (316), Expect = 1.409e-31
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF  + DA+RARE LNG +VEGRKIEV
Sbjct:  153 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEV 225
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Sea Lamprey
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923])

HSP 1 Score: 67.781 bits (164), Expect = 2.527e-12
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:  385 FSSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFN-ERG-SKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
             +SGP RL+V ++ F   EA L  +  PFG I +++++ + E G SKGFGF+TF++A  A++A E LNGF + GR ++V
Sbjct:  267 LASGPMRLYVGSLHFNITEAMLMGIFEPFGKIDNIQLMMDPETGRSKGFGFITFSSADCAKKALEQLNGFELAGRPMKV 345
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Sea Lamprey
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923])

HSP 1 Score: 64.6994 bits (156), Expect = 2.461e-11
Identity = 48/166 (28.92%), Postives = 81/166 (48.80%), Query Frame = 1 
Query:  157 FLAATSNSTQNRLISDQDISNGPTEIFKLKEEASKVSFSSNEVTNISNSILPGMPV-----SALTNSTSEPNIFNVTLQNHFSSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERG--SKGFGFVTFANALDAERARESLNGFVVEGRKIEVIQVIKK 633
            F +A       R+ISD++        +    E   VS +      ++   L G+P+      A  N  +       T+Q   ++GP RL+V ++ F   E  L+ +  PFG I + +++ +     S+G+GFVTFA+A  A +A E LNGF + GR ++V  V ++
Sbjct:  178 FFSAVGKVRDVRMISDRNSRRSKGIAYIEFVEVDSVSLA----IGLTGQRLLGVPIIVQASQAEKNRAAAAAAAAATMQKS-TAGPMRLYVGSLHFNITEDMLKGIFEPFGKIENCQLMMDSDTGRSRGYGFVTFADAECARKALEQLNGFELAGRPMKVGHVTER 338
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Sea Lamprey
Match: rbfox3b (RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-GENE-091204-46])

HSP 1 Score: 53.1434 bits (126), Expect = 1.913e-9
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:  517 KGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            +GFGFVTF N+ DA+RARE L+G +VEGRKIEV
Sbjct:    2 QGFGFVTFENSADADRAREKLHGTMVEGRKIEV 34

HSP 2 Score: 26.1794 bits (56), Expect = 1.913e-9
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 2 
Query:  641 KVNHATARIMTKKKA 685
            +VN+ATAR+MT KKA
Sbjct:   33 EVNNATARVMTNKKA 47
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Sea Lamprey
Match: BOLL (boule homolog, RNA binding protein [Source:HGNC Symbol;Acc:HGNC:14273])

HSP 1 Score: 55.4546 bits (132), Expect = 1.100e-8
Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERG-SKGFGFVTFANALDAERARESLNGFVVEGRKIEVIQVIKK 633
            P R+ V  I F+  EA+L+     FG + DV+II +  G SKG+GFVTF +  DA++ ++     + + +K+ +   I+K
Sbjct:   41 PNRIFVGGIDFKVNEAELKKYFTQFGVVKDVKIINDRAGVSKGYGFVTFESQEDAQKIQQEAEKIMYKDKKLNIGPAIRK 120
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Sea Lamprey
Match: tia1l (cytotoxic granule-associated RNA binding protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-2167])

HSP 1 Score: 50.8322 bits (120), Expect = 2.519e-7
Identity = 26/65 (40.00%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:  445 DLRALLGPFGTIIDVEII--FNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEVIQVIKK 633
            DLRA   PFG I D  ++       SKG+GFV+F   LDAE A + + G  + GR+I      +K
Sbjct:   18 DLRAAFAPFGKISDARVVKDLATGKSKGYGFVSFFQKLDAENAIQQMGGQWLGGRQIRTNWATRK 82
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Yeast
Match: NOP15 (Constituent of 66S pre-ribosomal particles; involved in 60S ribosomal subunit biogenesis; localizes to both nucleolus and cytoplasm [Source:SGD;Acc:S000005054])

HSP 1 Score: 48.1358 bits (113), Expect = 8.430e-7
Identity = 23/72 (31.94%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:  406 LHVSNIPFRFREADLRALLGPFGTIIDVEIIFNER--GSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            ++VS +P  F E +L      FG + +V +  N++   S+ +GF+ F N  DA  A+ES+N +++ G  ++V
Sbjct:   93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQV 164
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Yeast
Match: MRD1 (Essential conserved small ribosomal subunit (40s) synthesis factor; component of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains and binds to the pre-rRNA at two sites within the 18S region [Source:SGD;Acc:S000006316])

HSP 1 Score: 46.9802 bits (110), Expect = 7.499e-6
Identity = 24/74 (32.43%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:  403 RLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNER--GSKGFGFVTFANALDAERARESLNGFVVEGRKIEVI 618
            RL + NI +  +E D R L  PFG + +V +  + R   SKGF +V F ++ +A  A   L+  + +GR + ++
Sbjct:  346 RLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHIL 419
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Nematostella
Match: EDO44890 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUE7])

HSP 1 Score: 120.168 bits (300), Expect = 6.023e-33
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:  376 QNHFSSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            +N  SSGPKRLHV+NIPFRFR+ DLR + G FG I DVEII+NERGSKGFGFVTF  A +A +ARE LNG +V+GRK+EV
Sbjct:    2 ENGDSSGPKRLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKGFGFVTFNTAAEANKAREKLNGTIVDGRKVEV 81
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Nematostella
Match: EDO33926 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQW0])

HSP 1 Score: 67.781 bits (164), Expect = 3.754e-12
Identity = 33/82 (40.24%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:  394 GPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERG--SKGFGFVTFANALDAERARESLNGFVVEGRKIEVIQVIKK 633
            GP RL+V ++ F   EA ++A+  PFGT+  V++I++     SKG+GFV F  A  A+RA E +NGF + GR +++  V ++
Sbjct:  213 GPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKIGPVTER 294
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Nematostella
Match: EDO29519 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T3E7])

HSP 1 Score: 60.4622 bits (145), Expect = 7.109e-11
Identity = 29/101 (28.71%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:  340 STSEPNIFNVTLQNHFSSGPKR-------LHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERG--SKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S + P ++N  L    +  P++       L + ++P  F +ADL     PFGT+I  ++  +++   SK FGFV++ N + A+ A + +NGF +  ++++V
Sbjct:   47 SAAFPTVYNQALYQQTARQPQKEGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKV 147
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Nematostella
Match: EDO29715 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T2V2])

HSP 1 Score: 55.8398 bits (133), Expect = 3.556e-10
Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:  406 LHVSNIPFRFREADLRALLGPFGTIIDVEII---FNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            + V ++PF   EADLR     +G +  V+II   F  R SKGFGFV   N  +A++A + LNG  VEGR I V
Sbjct:    3 IFVGSLPFSIEEADLRGFFEEYGAVDSVKIISDKFTGR-SKGFGFVEMPNDAEAQKAIDELNGGTVEGRTIVV 74
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Nematostella
Match: EDO30576 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T0E1])

HSP 1 Score: 61.6178 bits (148), Expect = 3.743e-10
Identity = 31/107 (28.97%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:  340 STSEPNIFNVTL-----------QNHFSSGP--KRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERG--SKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            S + P ++N  L           ++H++ GP    L + ++P  F +ADL     PFGT+I  ++  +++   SK FGFV++ N + A+ A + +NGF +  ++++V
Sbjct:  337 SAAFPTVYNQALYQQTARQPQKEESHYTPGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKV 443
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Medaka
Match: rbfox1l (RNA binding protein fox-1 homolog 1-like [Source:NCBI gene;Acc:101163271])

HSP 1 Score: 126.331 bits (316), Expect = 1.537e-31
Identity = 68/126 (53.97%), Postives = 82/126 (65.08%), Query Frame = 1 
Query:  328 ALTNSTSEPNIFNVTLQNHF----------SSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV----IQVIKKFCQGQSCNSE 663
            AL   TS+P   NV+                + PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF +A +A+RARE LNG +VEGRKIEV     +V+ K  Q    N++
Sbjct:  111 ALAPVTSDPQSLNVSSGGGAGSGSEEEGSGKAQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFESAAEADRAREKLNGTIVEGRKIEVNNATARVVTKKPQTPLVNAD 236
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Medaka
Match: rbfox1l (RNA binding protein fox-1 homolog 1-like [Source:NCBI gene;Acc:101163271])

HSP 1 Score: 125.946 bits (315), Expect = 2.906e-31
Identity = 64/106 (60.38%), Postives = 74/106 (69.81%), Query Frame = 1 
Query:  328 ALTNSTSEPNIFNVTLQNHF----------SSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            AL   TS+P   NV+                + PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF +A +A+RARE LNG +VEGRKIEV
Sbjct:  111 ALAPVTSDPQSLNVSSGGGAGSGSEEEGSGKAQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFESAAEADRAREKLNGTIVEGRKIEV 216
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Medaka
Match: rbfox1l (RNA binding protein fox-1 homolog 1-like [Source:NCBI gene;Acc:101163271])

HSP 1 Score: 125.561 bits (314), Expect = 3.298e-31
Identity = 68/126 (53.97%), Postives = 82/126 (65.08%), Query Frame = 1 
Query:  328 ALTNSTSEPNIFNVTLQNHF----------SSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV----IQVIKKFCQGQSCNSE 663
            AL   TS+P   NV+                + PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF +A +A+RARE LNG +VEGRKIEV     +V+ K  Q    N++
Sbjct:  110 ALAPVTSDPQSLNVSSGGGAGSGSEEEGSGKAQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFESAAEADRAREKLNGTIVEGRKIEVNNATARVVTKKPQTPLVNAD 235
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Medaka
Match: rbfox2 (RNA binding protein fox-1 homolog 2 [Source:NCBI gene;Acc:101157754])

HSP 1 Score: 125.176 bits (313), Expect = 5.763e-31
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF ++ DAERARE L+G +VEGRKIEV
Sbjct:  112 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFESSADAERAREKLHGTLVEGRKIEV 184
[Close]
BLAST of RNA binding protein fox-1 vs. Ensembl Medaka
Match: rbfox3b (RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:101159826])

HSP 1 Score: 125.946 bits (315), Expect = 6.713e-31
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:  397 PKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            PKRLHVSNIPFRFR+ DLR + G FG I+DVEIIFNERGSKGFGFVTF  + DA+RARE LNG +VEGRKIEV
Sbjct:  247 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSTDADRAREKLNGTIVEGRKIEV 319
[Close]
BLAST of RNA binding protein fox-1 vs. Planmine SMEST
Match: SMESG000033763.1 (SMESG000033763.1)

HSP 1 Score: 342.428 bits (877), Expect = 4.430e-171
Identity = 169/173 (97.69%), Postives = 169/173 (97.69%), Query Frame = 1 
Query:  109 MCDT----NQQSSNPVINGNFLAATSNSTQNRLISDQDISNGPTEIFKLKEEASKVSFSSNEVTNISNSILPGMPVSALTNSTSEPNIFNVTLQNHFSSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            MCDT    NQQSSNPVINGNFLAATSNSTQNRLISDQDISNGPTEIFKLKEEASKVSFSSNEVTNISNSILPGMPVSALTNSTSEPNIFNVTLQNHFSSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV
Sbjct:    1 MCDTQMVQNQQSSNPVINGNFLAATSNSTQNRLISDQDISNGPTEIFKLKEEASKVSFSSNEVTNISNSILPGMPVSALTNSTSEPNIFNVTLQNHFSSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 173

HSP 2 Score: 224.942 bits (572), Expect = 4.430e-171
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 2 
Query:  641 KVNHATARIMTKKKAETLQAAVKSATNANALRSVLARNSIGNVTLTGYNFPLNASMLAASNILRPVXXXXXXXXXXXXXTDPAILTALASTDIARLQSGLTYNNLLGYNGSTIVRNPTNXXXXXXXXXXXXXXXXXXNTINLSTPLVNASLLTS 1102
            +VNHATARIMTKKKAETLQAAVKSATNANALRSVLARNSIGNVTLTGYNFPLNASMLAASNILRPVQSQLLQSYNSLYLTDPAILTALASTDIARLQSGLTYNNLLGYNGSTIVRNPTNLTTLTAMSAQSAAQTASANTINLSTPLVNASLLTS
Sbjct:  172 EVNHATARIMTKKKAETLQAAVKSATNANALRSVLARNSIGNVTLTGYNFPLNASMLAASNILRPVQSQLLQSYNSLYLTDPAILTALASTDIARLQSGLTYNNLLGYNGSTIVRNPTNLTTLTAMSAQSAAQTASANTINLSTPLVNASLLTS 325

HSP 3 Score: 76.6406 bits (187), Expect = 4.430e-171
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 3 
Query: 1104 QIRLELMPQLFILISTVQLISRSLHLIKDMRIMQITC 1214
            QIRLELMPQLFILISTVQLISRSLHLIKDMRIMQITC
Sbjct:  326 QIRLELMPQLFILISTVQLISRSLHLIKDMRIMQITC 362
[Close]
BLAST of RNA binding protein fox-1 vs. Planmine SMEST
Match: SMESG000033763.1 (SMESG000033763.1)

HSP 1 Score: 336.65 bits (862), Expect = 1.199e-107
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 1 
Query:  121 NQQSSNPVINGNFLAATSNSTQNRLISDQDISNGPTEIFKLKEEASKVSFSSNEVTNISNSILPGMPVSALTNSTSEPNIFNVTLQNHFSSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEVI 618
            NQQSSNPVINGNFLAATSNSTQNRLISDQDISNGPTEIFKLKEEASKVSFSSNEVTNISNSILPGMPVSALTNSTSEPNIFNVTLQNHFSSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIE I
Sbjct:    4 NQQSSNPVINGNFLAATSNSTQNRLISDQDISNGPTEIFKLKEEASKVSFSSNEVTNISNSILPGMPVSALTNSTSEPNIFNVTLQNHFSSGPKRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEQI 169

HSP 2 Score: 229.565 bits (584), Expect = 3.980e-76
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 2 
Query:  638 AKVNHATARIMTKKKAETLQAAVKSATNANALRSVLARNSIGNVTLTGYNFPLNASMLAASNILRPVXXXXXXXXXXXXXTDPAILTALASTDIARLQSGLTYNNLLGYNGSTIVRNPTNXXXXXXXXXXXXXXXXXXNTINLSTPLVNASLLTS 1102
            AKVNHATARIMTKKKAETLQAAVKSATNANALRSVLARNSIGNVTLTGYNFPLNASMLAASNILRPVQSQLLQSYNSLYLTDPAILTALASTDIARLQSGLTYNNLLGYNGSTIVRNPTNLTTLTAMSAQSAAQTASANTINLSTPLVNASLLTS
Sbjct:  472 AKVNHATARIMTKKKAETLQAAVKSATNANALRSVLARNSIGNVTLTGYNFPLNASMLAASNILRPVQSQLLQSYNSLYLTDPAILTALASTDIARLQSGLTYNNLLGYNGSTIVRNPTNLTTLTAMSAQSAAQTASANTINLSTPLVNASLLTS 626

HSP 3 Score: 75.485 bits (184), Expect = 3.980e-76
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 3 
Query: 1104 QIRLELMPQLFILISTVQLISRSLHLIKDMRIMQITC 1214
            QIRLELMPQLFILISTVQLISRSLHLIKDMRIMQITC
Sbjct:  627 QIRLELMPQLFILISTVQLISRSLHLIKDMRIMQITC 663
[Close]
BLAST of RNA binding protein fox-1 vs. Planmine SMEST
Match: SMESG000033763.1 (SMESG000033763.1)

HSP 1 Score: 207.994 bits (528), Expect = 4.757e-70
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 2 
Query:  668 MTKKKAETLQAAVKSATNANALRSVLARNSIGNVTLTGYNFPLNASMLAASNILRPVXXXXXXXXXXXXXTDPAILTALASTDIARLQSGLTYNNLLGYNGSTIVRNPTNXXXXXXXXXXXXXXXXXXNTINLSTPLVNASLLTS 1102
            MTKKKAETLQAAVKSATNANALRSVLARNSIGNVTLTGYNFPLNASMLAASNILRPVQSQLLQSYNSLYLTDPAILTALASTDIARLQSGLTYNNLLGYNGSTIVRNPTNLTTLTAMSAQSAAQTASANTINLSTPLVNASLLTS
Sbjct:    1 MTKKKAETLQAAVKSATNANALRSVLARNSIGNVTLTGYNFPLNASMLAASNILRPVQSQLLQSYNSLYLTDPAILTALASTDIARLQSGLTYNNLLGYNGSTIVRNPTNLTTLTAMSAQSAAQTASANTINLSTPLVNASLLTS 145

HSP 2 Score: 77.0258 bits (188), Expect = 4.757e-70
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 3 
Query: 1104 QIRLELMPQLFILISTVQLISRSLHLIKDMRIMQITC 1214
            QIRLELMPQLFILISTVQLISRSLHLIKDMRIMQITC
Sbjct:  146 QIRLELMPQLFILISTVQLISRSLHLIKDMRIMQITC 182
[Close]
BLAST of RNA binding protein fox-1 vs. Planmine SMEST
Match: SMESG000019470.1 (SMESG000019470.1)

HSP 1 Score: 119.783 bits (299), Expect = 3.007e-30
Identity = 51/72 (70.83%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:  400 KRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            KR+H+SNIPFR+RE+D+R LL P+G ++DVEIIFNERGSKGFGFVTFAN  DA +AR+ LNG  VEGR+IE+
Sbjct:   29 KRMHISNIPFRYRESDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEI 100
[Close]
BLAST of RNA binding protein fox-1 vs. Planmine SMEST
Match: SMESG000019470.1 (SMESG000019470.1)

HSP 1 Score: 113.62 bits (283), Expect = 5.099e-28
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:  400 KRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSK-----GFGFVTFANALDAERARESLNGFVVEGRKIEV 615
            KR+H+SNIPFR+RE+D+R LL P+G ++DVEIIFNERGSK     GFGFVTFAN  DA +AR+ LNG  VEGR+IE+
Sbjct:   29 KRMHISNIPFRYRESDVRQLLKPYGQLLDVEIIFNERGSKNFSGTGFGFVTFANPDDAAKARDDLNGKDVEGRRIEI 105
The following BLAST results are available for this feature:
BLAST of RNA binding protein fox-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RBFOX11.069e-3378.38RNA binding fox-1 homolog 1 [Source:HGNC Symbol;Ac... [more]
RBFOX11.514e-3378.67RNA binding fox-1 homolog 1 [Source:HGNC Symbol;Ac... [more]
RBFOX11.683e-3378.67RNA binding fox-1 homolog 1 [Source:HGNC Symbol;Ac... [more]
RBFOX25.165e-3378.67RNA binding fox-1 homolog 2 [Source:HGNC Symbol;Ac... [more]
RBFOX25.165e-3378.67RNA binding fox-1 homolog 2 [Source:HGNC Symbol;Ac... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
fox-13.021e-2870.27Sex determination protein fox-1 [Source:UniProtKB... [more]
fox-14.444e-2870.27Sex determination protein fox-1 [Source:UniProtKB... [more]
fox-15.614e-2870.27Sex determination protein fox-1 [Source:UniProtKB... [more]
asd-12.186e-2664.86RNA-binding protein ASD-1 [Source:UniProtKB/TrEMB... [more]
asd-12.395e-2664.86RNA-binding protein ASD-1 [Source:UniProtKB/TrEMB... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rbfox14.037e-3484.00gene:FBgn0052062 transcript:FBtr0305095[more]
Rbfox14.890e-3484.00gene:FBgn0052062 transcript:FBtr0113419[more]
Rbfox14.964e-3484.00gene:FBgn0052062 transcript:FBtr0305097[more]
Rbfox15.130e-3484.00gene:FBgn0052062 transcript:FBtr0113418[more]
Rbfox16.613e-3484.00gene:FBgn0052062 transcript:FBtr0473371[more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbfox3b1.388e-3378.08RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-... [more]
rbfox11.115e-3278.08RNA binding fox-1 homolog 1 [Source:NCBI gene;Acc:... [more]
rbfox3b2.338e-3278.08RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-... [more]
rbfox3a9.703e-3278.08RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-... [more]
rbfox1l1.277e-3164.21RNA binding fox-1 homolog 1, like [Source:NCBI gen... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
yaf21.263e-3278.08YY1 associated factor 2 [Source:Xenbase;Acc:XB-GEN... [more]
yaf22.763e-3278.08YY1 associated factor 2 [Source:Xenbase;Acc:XB-GEN... [more]
lsm123.673e-3279.45LSM12 homolog [Source:Xenbase;Acc:XB-GENE-5780031][more]
yaf23.912e-3278.08YY1 associated factor 2 [Source:Xenbase;Acc:XB-GEN... [more]
lsm125.254e-3279.45LSM12 homolog [Source:Xenbase;Acc:XB-GENE-5780031][more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rbfox13.834e-3378.67RNA binding protein, fox-1 homolog (C. elegans) 1 ... [more]
Rbfox25.569e-3378.67RNA binding protein, fox-1 homolog (C. elegans) 2 ... [more]
Rbfox38.741e-3377.78RNA binding protein, fox-1 homolog (C. elegans) 3 ... [more]
Rbfox12.443e-3278.67RNA binding protein, fox-1 homolog (C. elegans) 1 ... [more]
Rbfox22.583e-3278.67RNA binding protein, fox-1 homolog (C. elegans) 2 ... [more]
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BLAST of RNA binding protein fox-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q95KI0|RFOX1_MACFA2.027e-3178.67RNA binding protein fox-1 homolog 1 OS=Macaca fasc... [more]
sp|Q5NVN8|RFOX1_PONAB2.508e-3178.67RNA binding protein fox-1 homolog 1 OS=Pongo abeli... [more]
sp|Q9JJ43|RFOX1_MOUSE3.978e-3178.67RNA binding protein fox-1 homolog 1 OS=Mus musculu... [more]
sp|Q9NWB1|RFOX1_HUMAN4.415e-3178.67RNA binding protein fox-1 homolog 1 OS=Homo sapien... [more]
sp|A6NFN3|RFOX3_HUMAN8.391e-3178.08RNA binding protein fox-1 homolog 3 OS=Homo sapien... [more]
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BLAST of RNA binding protein fox-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3P8LEJ51.797e-3484.81RRM domain-containing protein OS=Trichobilharzia r... [more]
A0A183VNZ81.911e-3484.81RRM domain-containing protein OS=Trichobilharzia r... [more]
A0A4S2M1B62.011e-3472.04RRM domain-containing protein OS=Opisthorchis feli... [more]
A0A564ZE622.026e-3463.06RRM domain-containing protein OS=Hymenolepis dimin... [more]
A0A158QBS12.233e-3463.06RRM domain-containing protein OS=Hymenolepis dimin... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbfox1l1.777e-3265.26RNA binding protein fox-1 homolog 1-like [Source:N... [more]
rbfox3b4.872e-3278.08RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-... [more]
rbfox16.965e-3278.08RNA binding fox-1 homolog 1 [Source:NCBI gene;Acc:... [more]
rbfox3a8.914e-3278.08RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-... [more]
rbfox3a1.409e-3178.08RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RBM392.527e-1244.30RNA binding motif protein 39 [Source:HGNC Symbol;A... [more]
RBM392.461e-1128.92RNA binding motif protein 39 [Source:HGNC Symbol;A... [more]
rbfox3b1.913e-972.73RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-... [more]
BOLL1.100e-835.00boule homolog, RNA binding protein [Source:HGNC Sy... [more]
tia1l2.519e-740.00cytotoxic granule-associated RNA binding protein 1... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
NOP158.430e-731.94Constituent of 66S pre-ribosomal particles; involv... [more]
MRD17.499e-632.43Essential conserved small ribosomal subunit (40s) ... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO448906.023e-3370.00Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO339263.754e-1240.24Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO295197.109e-1128.71Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO297153.556e-1045.21Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO305763.743e-1028.97Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RNA binding protein fox-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbfox1l1.537e-3153.97RNA binding protein fox-1 homolog 1-like [Source:N... [more]
rbfox1l2.906e-3160.38RNA binding protein fox-1 homolog 1-like [Source:N... [more]
rbfox1l3.298e-3153.97RNA binding protein fox-1 homolog 1-like [Source:N... [more]
rbfox25.763e-3178.08RNA binding protein fox-1 homolog 2 [Source:NCBI g... [more]
rbfox3b6.713e-3178.08RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:... [more]
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BLAST of RNA binding protein fox-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000033763.14.430e-17197.69SMESG000033763.1[more]
SMESG000033763.11.199e-10799.40SMESG000033763.1[more]
SMESG000033763.14.757e-70100.00SMESG000033763.1[more]
SMESG000019470.13.007e-3070.83SMESG000019470.1[more]
SMESG000019470.15.099e-2866.23SMESG000019470.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30024843 ID=SMED30024843|Name=RNA binding protein fox-1|organism=Schmidtea mediterranea sexual|type=transcript|length=1626bp
ATTAAAATTTGTTCGATCTTTATAGTCGAAATTTGTTCGGTTTAATATTT
CTGCCATTTTACTGATTCTCAATTGTGATAGTATCGTTTTCAAAGTGGAT
TTTAATTGATGTGCGATACGAATCAACAGTCTTCAAATCCTGTGATTAAT
GGAAATTTTCTTGCTGCAACTTCGAATTCGACACAAAATCGCCTCATCAG
TGACCAAGACATTTCAAATGGTCCAACGGAAATCTTCAAGCTGAAGGAAG
AAGCTTCAAAAGTTTCATTTTCCTCAAATGAAGTCACAAATATTTCCAAT
TCAATTTTACCAGGAATGCCAGTTTCAGCACTAACGAATTCAACCTCTGA
ACCAAATATATTTAATGTGACTCTTCAAAATCACTTTTCCTCAGGACCAA
AGAGACTTCATGTATCGAACATACCATTCAGGTTTCGTGAAGCAGATTTA
CGTGCATTACTTGGTCCTTTTGGTACAATAATAGATGTAGAAATAATTTT
TAATGAAAGAGGATCAAAGGGATTTGGATTTGTAACATTTGCTAATGCTT
TGGATGCCGAAAGAGCCAGGGAAAGTCTTAATGGGTTTGTTGTAGAAGGA
AGAAAGATTGAAGTCATCCAAGTTATCAAAAAATTCTGCCAAGGTCAATC
ATGCAACAGCGAGAATTATGACCAAGAAAAAAGCTGAAACATTACAAGCT
GCTGTCAAATCAGCAACAAATGCCAATGCTCTGAGAAGTGTGCTTGCCCG
TAATTCAATTGGAAACGTTACTCTGACGGGATATAATTTCCCACTCAATG
CGTCCATGCTAGCCGCATCAAATATATTGAGACCTGTTCAGTCACAACTC
TTACAGTCCTACAATTCTCTCTATTTGACGGATCCAGCTATTCTTACAGC
TCTGGCTTCAACTGATATAGCCCGTCTGCAAAGTGGATTAACTTACAATA
ATCTACTTGGATACAATGGGTCAACAATTGTTAGAAATCCCACAAATTTG
ACAACCCTAACAGCGATGAGTGCTCAATCAGCTGCTCAAACTGCTAGTGC
AAATACAATTAATCTCAGTACTCCACTCGTCAATGCGTCGTTGCTAACTT
CTGCAAATCCGACTGGAATTAATGCCGCAGCTCTTTATCCTAATCTCCAC
AGTTCAATTAATCAGTCGCTCACTTCACTTAATCAAGGATATGCGGATTA
TGCAAATAACCTGCTAACAGTCGATTCTCTGTCCCGGCTGGCGGCGGCGG
GAGCGTATGGATTTACTGGGATCGCCTCTCCTTCTATTTATAGATCTAAT
CAAAGATTCTCTCCCTATTAAATGTCTTCTTTATCGATTATTTGAACATT
TAAAGCATTGAAGTTTCTGTTTTTCAATTATTTTAGACCCATTATAATGC
ATTTGTTTCGGTTTCATTCATTTCAATGTTCACTAGAACTTTATGCTGAC
CAGATGAAAGTAGTTGAAACTATTTTGAATTTATTATTTGGCATGCTGAA
TATATTGTCATTTGTTTTAATTTCCGTACCAAAAACACAAACTGGTTCTG
ACAGTATTATAATGTATATAGATTACTTTTTGGTATTTCATGACAAATTT
TATCTTTCATTTGACTAATTTCTCTA
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protein sequence of SMED30024843-orf-1

>SMED30024843-orf-1 ID=SMED30024843-orf-1|Name=SMED30024843-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=218bp
MTKKKAETLQAAVKSATNANALRSVLARNSIGNVTLTGYNFPLNASMLAA
SNILRPVQSQLLQSYNSLYLTDPAILTALASTDIARLQSGLTYNNLLGYN
GSTIVRNPTNLTTLTAMSAQSAAQTASANTINLSTPLVNASLLTSANPTG
INAAALYPNLHSSINQSLTSLNQGYADYANNLLTVDSLSRLAAAGAYGFT
GIASPSIYRSNQRFSPY*
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protein sequence of SMED30024843-orf-2

>SMED30024843-orf-2 ID=SMED30024843-orf-2|Name=SMED30024843-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=193bp
MCDTNQQSSNPVINGNFLAATSNSTQNRLISDQDISNGPTEIFKLKEEAS
KVSFSSNEVTNISNSILPGMPVSALTNSTSEPNIFNVTLQNHFSSGPKRL
HVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDA
ERARESLNGFVVEGRKIEVIQVIKKFCQGQSCNSENYDQEKS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003723RNA binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 99..170
e-value: 2.9E-21
score: 86.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 101..167
e-value: 3.7E-17
score: 61.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 98..169
score: 16.602
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 89..184
e-value: 2.1E-23
score: 84.4
NoneNo IPR availablePANTHERPTHR15597ATAXIN 2-BINDING PROTEIN 1-RELATEDcoord: 91..169
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 88..175