Ubiquitin carboxyl-terminal hydrolase
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30024805 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. UniProt/SwissProt
Match: sp|Q9UUD6|UBP11_SCHPO (Ubiquitin carboxyl-terminal hydrolase 11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ubp11 PE=3 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 4.155e-7 Identity = 74/290 (25.52%), Postives = 118/290 (40.69%), Query Frame = 3 Query: 942 GLENVT-NECYMNSTMQALASSEKVLQFIDQTKEFLNGSEILMTFSNLIEGLNNTDGTGSVEXXXXXXXXXXXXXXXXXXXQQDAFDFLTATTNAI-------HNEMKKMNIKIDLP----MKSEV-IYQTLGSHASEKAQYNIGLHLGLSGHYQERPGVELVDL--------IKEYFAISIIDG--KETETS--RLFFYKQIPNVLILHIQANRWDMEMNKMVKPTYYILYEENMKLELPVKVERTDVELRLEKCEYSLVAVIHHSGTISNGHYVTNRKFKDSWLLAND 1736 GL NV+ N+C++N +Q+LAS E +L+ + K + S + T L++ LN+ G + ++ + QQDA +FL + + K ++ +D P M+ +V Q L S +I L L Y V L+ L I +Y S K ++TS R +K P IL IQ R + + N+ + P K+ + K Y L ++I HSG+++ GHY+ R D W AND Sbjct: 50 GLYNVSGNDCFLNCVLQSLASQESLLEIL---KLRCSSSTLYATLYELLQKLNSGPGNPITPGSFLNSLEIATNKKLVRSIQQDAQEFLQHLVETLELQKPHTYKWSKVLSFPVDSPFIGTMEQKVQCCQCLAISISYSTATSI--QLCLPPEYSGNSNVSLLSLMEADREQHISDYKCDSCFKSSPKHSKTSCIRTVDWKNPPT--ILQIQLERTSYTCQGLTR--------NNVSISFPSKL------ILKNKHHYILRSLITHSGSVTYGHYLCYRLQDDIWWKAND 318
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. TrEMBL
Match: A0A1I8IFN2 (Ubiquitin carboxyl-terminal hydrolase OS=Macrostomum lignano OX=282301 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.029e-8 Identity = 77/311 (24.76%), Postives = 128/311 (41.16%), Query Frame = 3 Query: 942 GLENVTNECYMNSTMQALASSEKVLQFIDQTKEF-----LNGSEILMTFSNLI----EGLNNTDGTGSVEXXXXXXXXXXXXXXXXXXXQQDAFDFLTATTNAIHNEMKKMNIKIDLPMK------SEVIYQTLG--------SHASEKA-QYNIGLHLGLSGHYQERPGVELVDLIKEYFAISIIDGKETET----------SRLFFYKQIPNVLILHI---QANRWDMEMNKMVKPTYYILYEENMKLELPVKVERTDVELRLEKC-EYSLVAVIHHSGTISNGHY--VTNRKFKDSWLLANDIQVEAA 1754 GL N+ N CYMNS +Q L+ +E +L+ + F NGS + ++NL+ + G + +QQDA +FL +H ++ ++++ LP + S V+ +G H S K+ ++ L L + R L +K + +DG E T + F ++P+VL++H+ R+ ++N +V E M+L++ E D + RL + +Y L AV H+GT GHY V WL ND +VE A Sbjct: 129 GLNNLGNTCYMNSILQCLSHTEPLLRHFVLERRFQPSAGRNGSGLAKAYANLMLRMWAASASPTGADCTSPTELKQCVAQYAPRFRGYSQQDAQEFLRYLLEGLHEDLNLVSVRPKLPPRYLQQENSPVVEAFVGQLKSTLECCHCSHKSVTFDPFWDLALPIPGKSR--TSLDACLKLFTNQETLDGNERPTCDRCRCRRKCVKRFHLYRLPSVLVIHLMRFSGERFKTKLNTLV--------EYPMELDV---SEFLDKKCRLRQTPQYRLYAVSEHAGTPYGGHYTAVVRHAGTGRWLRYNDNRVEEA 426
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. TrEMBL
Match: A0A1I8G214 (USP domain-containing protein OS=Macrostomum lignano OX=282301 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.079e-8 Identity = 76/311 (24.44%), Postives = 129/311 (41.48%), Query Frame = 3 Query: 942 GLENVTNECYMNSTMQALASSEKVLQFIDQTKEF-----LNGSEILMTFSNLI----EGLNNTDGTGSVEXXXXXXXXXXXXXXXXXXXQQDAFDFLTATTNAIHNEMKKMNIKIDLPMK------SEVIYQTLG--------SHASEKA-QYNIGLHLGLSGHYQERPGVELVDLIKEYFAISIIDGKETET----------SRLFFYKQIPNVLILHI---QANRWDMEMNKMVKPTYYILYEENMKLELPVKVERTDVELRLEKC-EYSLVAVIHHSGTISNGHY--VTNRKFKDSWLLANDIQVEAA 1754 GL N+ N CYMNS +Q L+ +E +L+ + F NGS + ++NL+ + G + +QQDA +FL +H ++ ++++ LP + S V+ +G H S K+ ++ L L + R ++ +K + +DG E T + F ++P+VL++H+ R+ ++N +V E M+L++ E D + RL + +Y L AV H+GT GHY V WL ND +VE A Sbjct: 22 GLNNLGNTCYMNSILQCLSHTEPLLRHFVLERRFQPSAGRNGSGLAKAYANLMLRMWAASASPTGADCTSPTELKQCVAQYAPRFRGYSQQDAQEFLRYLLEGLHEDLNLVSVRPKLPPRYLQQENSPVVEAFVGQLKSTLECCHCSHKSVTFDPFWDLALPIPGKSRTSLDAC--LKLFTNQETLDGNERPTCDRCRCRRKCVKRFHLYRLPSVLVIHLMRFSGERFKTKLNTLV--------EYPMELDV---SEFLDKKCRLRQTPQYRLYAVSEHAGTPYGGHYTAVVRHAGTGRWLRYNDNRVEEA 319
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. TrEMBL
Match: A0A553R391 (USP domain-containing protein OS=Danionella translucida OX=623744 GN=DNTS_024264 PE=3 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 5.721e-7 Identity = 71/298 (23.83%), Postives = 118/298 (39.60%), Query Frame = 3 Query: 942 GLENVTNECYMNSTMQALASSEKVLQFI-----DQTKEFLNGSEILMTFSNLIEGL--NNTDGTGSVEXXXXXXXXXXXXXXXXXXXQQDAFDFLTATTNAIHNEMKKMNIK----IDLPMK-------SEVIYQTLGSHASE---------KAQYNIGLHLGLSGHYQERPGVELVDLIKEYFAISIIDGKETETSRLFFYKQIPNVLILHIQANRWDMEMNKMVKPTYYILYE-ENMKLELPVKVERTDVELRLEKCEYSLVAVIHHSGTISNGHYVTNRKFKDSWLLANDIQVEA 1751 GL N+ N C++N+ MQ L+ + + + Q K ++ FS ++ GL N G +V + ++ +QQDA +FL + +H E+ + K I+L + SE + H Q LH + HY V DL + + TE+++ ++ P +L++H+ NR+ M + K T I + + L V+ V Y L AV +HSGT++ GHY + +D W ND V A Sbjct: 63 GLRNIGNTCFLNAIMQCLSHTRSLRDYCLMRTYIQDKHSSQEPVLMNEFSKVLAGLWDCNNGGESTVNPGKFYHVFKESVPYFNGYSQQDAQEFLRFLLDRLHTEINRRPSKRPAVIELKQQTYSRFRISEEAFAVWQRHLDRDDSKIVDLFSGQLRSSLHCSVCSHYSNTFDV-FCDLSLPIPKMCERCNRCTESTKRLSIQRFPRILVIHL--NRFAMSKFSISKSTVSISFPLRGLDLGPFGPVDCGPVL-------YDLYAVCYHSGTVNMGHYTAACREQDGWSCYNDSCVNA 350
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. TrEMBL
Match: A0A075ART8 (Ubiquitin carboxyl-terminal hydrolase OS=Rozella allomycis (strain CSF55) OX=988480 GN=O9G_003153 PE=3 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 1.160e-6 Identity = 63/277 (22.74%), Postives = 112/277 (40.43%), Query Frame = 3 Query: 942 GLENVTNECYMNSTMQALASSEKVLQFIDQTKEFLNGSEILMTFSNLIEGLNNTDGTGSVEXXXXXXXXXXXXXXXXXXXQQDAFDFLTATTNAIHNEMKKMNIKIDLPMKSEVIYQTLGSHASEKAQYNIGLHLGLSGHYQERPGVELVDLIKEYFAISIIDGKETETSRLFFYKQIPNVLILHIQANRWDMEMNKMVKPTYYILYEENMKLELP----VKVERTDV---ELRLEKCE-----YSLVAVIHHSGTISNGHYVTNRKFKDSWLLAND 1736 GL+N+ N CY+N+ +Q L+ + ++ + K N S ++ TF N + T + +S + Q DA +FL + +H+EM ++ K + + S S+ + G+ V L D ++ +F+ IID K V +A + +M+ + P ++ + N ++ LP + DV + C Y L A+ +H+GT+SNGHY N K + W + ND Sbjct: 187 GLQNLGNTCYINAVLQCLSCIKPLVVYFKNKKP--NASVVITTFENWLRQY--WISTSICDGSSIKSIVENHNSTFQGNEQHDAHEFLNSLLVLLHDEMNRVKFNAKFNFKQKDQHLVSNSFLSD-------IFCGMLESKGPPTKVNLEDCLETFFSSEIID------------KSANYVCSQCTKAQMIEKKMSVITHPQILVIRKLNTQIVLPELLNINALGADVPEQQSDQNHCSKLDLSYELFAICNHNGTLSNGHYYANVKLNEKWYIVND 440
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. TrEMBL
Match: A0A3Q3J145 (Ubiquitin carboxyl-terminal hydrolase OS=Monopterus albus OX=43700 PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 1.715e-6 Identity = 74/302 (24.50%), Postives = 122/302 (40.40%), Query Frame = 3 Query: 942 GLENVTNECYMNSTMQALASSEKVLQFIDQTKEFLNGSEILMTFSNLIEGLNNTDGTGSVEXXXXXXXXXXXXXXXXXXX-----QQDAFDFLTATTNAIHN-------EMKKMNIKIDLPMKSEVIYQTL--------GSHASEKAQYNIGLHLGLSGHYQERPGVELVDLIKEYFAISIID----GKETETSRLFFYKQIPNVLILHIQANRW--DMEMNKMVKPTYYILYEENMKLELPVKVERTDVELRLEKCEYSLVAVIHHSG-TISNGHYVTNRKF-------KDSWLLANDIQV 1745 G N+ CYMNST+Q L + + + + K N + L+E L + S+ LL + QQDA +FL + + + E M P+ + + +Q L G ++ + Y L L L PG + +++Y S ++ E+S+ + + +PNVLILH++ R+ E+ K+V P + EL V E + + + + YSLV+VI H G T +GHY+ + + D WL ND V Sbjct: 302 GFPNLAQTCYMNSTLQGLLTLKHFVHEFNSQKTVWNTNAKCQIIRCLVE-LEACRTSNSMSRRKQLLAAFKQSVAEFNSEFDDDGQQDAHEFLICVLDKMRSLSLELQEEACSMGFSYTCPVNAHIAFQMLNTMTCRRCGVQSTREEDY-TALSLDLV------PGSSVWQCLQQYLKGSYLEYHCECGAKESSQQWSFLTLPNVLILHLKRLRFTPSFEVEKVVSPII-------LSRELVVHSEPSSTQQTMSR--YSLVSVISHLGYTAHSGHYICDGAYPEEPGDVTDRWLTYNDKHV 586
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Ensembl Cavefish
Match: usp2b (ubiquitin carboxyl-terminal hydrolase 2-like [Source:NCBI gene;Acc:103044554]) HSP 1 Score: 53.9138 bits (128), Expect = 4.321e-7 Identity = 67/327 (20.49%), Postives = 131/327 (40.06%), Query Frame = 3 Query: 942 GLENVTNECYMNSTMQALASSEKVLQFI-------DQTKEFLNGSEILMTFSNLIEGLNNTDGTGSVEXXXXXXXXXXXXXXXXXXXQQDAFDFLTATTNAIHNEMKKMNIKIDLPMK-----------------------SEVIYQTLGSHASEKAQYNIG-----------LHLGLSGHYQERPGVELVDLIKEYFAISIIDGKETET----------SRLFFYKQIPNVLILHIQANRWDMEMNKMVKPTYYILYEENMKLELPVKVERTDVELRLEKCE------YSLVAVIHHSGTISNGHYVTNRKFKDS--WLLANDIQV 1745 GL N+ N C+MNS +Q L+++ + + D + ++ F+ L + L + ++ + + + NQQDA +FL + +HNE+ +++++ +P++ S+V+ +G S G L L ++ E V L+D ++ + ++DG E T ++ F ++ P VL+LH++ R+ K K + ++ P+K +++LR + Y+L AV +H+GT GHY + + W ND +V Sbjct: 183 GLRNLGNTCFMNSILQCLSNTHDLRDYCLRNTHRTDLNNNCRANAALMEEFAKLTQILWTSASNEAISPSDFKTQIQKYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVSVRPRVPVEDFDHLSDDEKAKRMWNKYLEREDSKVVDLFVGQLKSSLTCSECGFCSTVFDPFWDLSLPIAKSSGE---VALIDCLRLFTKEDVLDGNEKPTCQRCKARRKCTKKFSIQKFPKVLVLHLK--RFSEARVKTAKLSTFV--------NFPIK----ELDLREFASDNSMNAIYNLYAVSNHTGTTLGGHYTAYCRNPSTGEWYTYNDSRV 492
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Ensembl Cavefish
Match: usp2b (ubiquitin carboxyl-terminal hydrolase 2-like [Source:NCBI gene;Acc:103044554]) HSP 1 Score: 53.1434 bits (126), Expect = 6.652e-7 Identity = 67/327 (20.49%), Postives = 131/327 (40.06%), Query Frame = 3 Query: 942 GLENVTNECYMNSTMQALASSEKVLQFI-------DQTKEFLNGSEILMTFSNLIEGLNNTDGTGSVEXXXXXXXXXXXXXXXXXXXQQDAFDFLTATTNAIHNEMKKMNIKIDLPMKSEVIYQTLGSHASEKAQYN----------IGLHLG-----------------------LSGHYQERPG-VELVDLIKEYFAISIIDGKETET----------SRLFFYKQIPNVLILHIQANRWDMEMNKMVKPTYYILYEENMKLELPVKVERTDVELRLEKCE------YSLVAVIHHSGTISNGHYVTNRKFKDS--WLLANDIQV 1745 GL N+ N C+MNS +Q L+++ + + D + ++ F+ L + L + ++ + + + NQQDA +FL + +HNE+ +++++ +P++ + L K +N + L +G LS + G V L+D ++ + ++DG E T ++ F ++ P VL+LH++ R+ K K + ++ P+K +++LR + Y+L AV +H+GT GHY + + W ND +V Sbjct: 63 GLRNLGNTCFMNSILQCLSNTHDLRDYCLRNTHRTDLNNNCRANAALMEEFAKLTQILWTSASNEAISPSDFKTQIQKYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVSVRPRVPVED---FDHLSDDEKAKRMWNKYLEREDSKVVDLFVGQLKSSLTCSECGFCSTVFDPFWDLSLPIAKSSGEVALIDCLRLFTKEDVLDGNEKPTCQRCKARRKCTKKFSIQKFPKVLVLHLK--RFSEARVKTAKLSTFV--------NFPIK----ELDLREFASDNSMNAIYNLYAVSNHTGTTLGGHYTAYCRNPSTGEWYTYNDSRV 372
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Ensembl Cavefish
Match: usp2b (ubiquitin carboxyl-terminal hydrolase 2-like [Source:NCBI gene;Acc:103044554]) HSP 1 Score: 52.7582 bits (125), Expect = 7.513e-7 Identity = 67/326 (20.55%), Postives = 131/326 (40.18%), Query Frame = 3 Query: 942 GLENVTNECYMNSTMQALASSEKVLQFI-------DQTKEFLNGSEILMTFSNLIEGLNNTDGTGSVEXXXXXXXXXXXXXXXXXXXQQDAFDFLTATTNAIHNEMKKMNIKIDLPMKSEVIYQTLGSHASEKAQYN----------IGLHLG-----------------------LSGHYQERPG-VELVDLIKEYFAISIIDGKETET----------SRLFFYKQIPNVLILHIQANRWDMEMNKMVKPTYYILYEENMKLELPVKVERTDVELRLEKCE-----YSLVAVIHHSGTISNGHYVTNRKFKDS--WLLANDIQV 1745 GL N+ N C+MNS +Q L+++ + + D + ++ F+ L + L + ++ + + + NQQDA +FL + +HNE+ +++++ +P++ + L K +N + L +G LS + G V L+D ++ + ++DG E T ++ F ++ P VL+LH++ R+ K K + ++ P+K +++LR + Y+L AV +H+GT GHY + + W ND +V Sbjct: 42 GLRNLGNTCFMNSILQCLSNTHDLRDYCLRNTHRTDLNNNCRANAALMEEFAKLTQILWTSASNEAISPSDFKTQIQKYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVSVRPRVPVED---FDHLSDDEKAKRMWNKYLEREDSKVVDLFVGQLKSSLTCSECGFCSTVFDPFWDLSLPIAKSSGEVALIDCLRLFTKEDVLDGNEKPTCQRCKARRKCTKKFSIQKFPKVLVLHLK--RFSEARVKTAKLSTFV--------NFPIK----ELDLREFASDNMNAIYNLYAVSNHTGTTLGGHYTAYCRNPSTGEWYTYNDSRV 350
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Planmine SMEST
Match: SMESG000057601.1 (SMESG000057601.1) HSP 1 Score: 745.347 bits (1923), Expect = 0.000e+0 Identity = 422/423 (99.76%), Postives = 423/423 (100.00%), Query Frame = 3 Query: 510 MHVNLPIFRFEMKFPYSLAIFFLFSVFAYPVKGDMSVDVSLRXXXXXXXXXXXXXXXXXXXXXXFKRPVEYEPILNIDSSSEESYPIENGCPKNEFISEPEGPRYINGDNLGVIINQGISSVETDKLQNVQXXXXXXXXXXXXCGLENVTNECYMNSTMQALASSEKVLQFIDQTKEFLNGSEILMTFSNLIEGLNNTDGTGSVEXXXXXXXXXXXXXXXXXXXQQDAFDFLTATTNAIHNEMKKMNIKIDLPMKSEVIYQTLGSHASEKAQYNIGLHLGLSGHYQERPGVELVDLIKEYFAISIIDGKETETSRLFFYKQIPNVLILHIQANRWDMEMNKMVKPTYYILYEENMKLELPVKVERTDVELRLEKCEYSLVAVIHHSGTISNGHYVTNRKFKDSWLLANDIQVEAAKFDPDVCP 1778 MHVNLPIFRFEMKFPYSLAIFFLFSVFAYPVKGDMSVDVSLRVLLPVVICAIIIIMLIIVCYCIFKRPVEYEPILNIDSSSEESYPIENGCPKNEFISEPEGPRYINGDNLGVIINQGISSVETDKLQNVQKEDEFLEEEFKLCGLENVTNECYMNSTMQALASSEKVLQFIDQTKEFLNGSEILMTFSNLIEGLNNTDGTGSVENNSNLLKKLILLINWSKLNQQDAFDFLTATTNAIHNEMKKMNIKIDLPMKSEVIYQTLGSHASEKAQYNIGLHLGLSGHYQERPGVEL+DLIKEYFAISIIDGKETETSRLFFYKQIPNVLILHIQANRWDMEMNKMVKPTYYILYEENMKLELPVKVERTDVELRLEKCEYSLVAVIHHSGTISNGHYVTNRKFKDSWLLANDIQVEAAKFDPDVCP Sbjct: 1 MHVNLPIFRFEMKFPYSLAIFFLFSVFAYPVKGDMSVDVSLRVLLPVVICAIIIIMLIIVCYCIFKRPVEYEPILNIDSSSEESYPIENGCPKNEFISEPEGPRYINGDNLGVIINQGISSVETDKLQNVQKEDEFLEEEFKLCGLENVTNECYMNSTMQALASSEKVLQFIDQTKEFLNGSEILMTFSNLIEGLNNTDGTGSVENNSNLLKKLILLINWSKLNQQDAFDFLTATTNAIHNEMKKMNIKIDLPMKSEVIYQTLGSHASEKAQYNIGLHLGLSGHYQERPGVELLDLIKEYFAISIIDGKETETSRLFFYKQIPNVLILHIQANRWDMEMNKMVKPTYYILYEENMKLELPVKVERTDVELRLEKCEYSLVAVIHHSGTISNGHYVTNRKFKDSWLLANDIQVEAAKFDPDVCP 423
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Planmine SMEST
Match: SMESG000057810.1 (SMESG000057810.1) HSP 1 Score: 208.379 bits (529), Expect = 3.365e-61 Identity = 120/279 (43.01%), Postives = 172/279 (61.65%), Query Frame = 3 Query: 942 GLENVTNECYMNSTMQALASSEKVLQFIDQTKEFLNGSEILMTFSNLIEGLNNTDGTGSVEXXXXXXXXXXXXXXXXXXXQQDAFDFLTATTNAIHNEMKKMNIKIDLPMKSEVIYQTLGSHASEKAQYNIGLHLGLSGHYQERPGVELVDLIKEYFAISIIDGKETETSRLFFYKQIPNVLILHIQANRWDMEMNKMVKPTYYILYEENMKLELPVKVERTDVELRLEKCEYSLVAVIHHSGTISNGHYVTNRKFKDSWLLANDIQVEAAKFDPDVCP 1778 GL N+ CYMNS +Q+LASS+K++ + ++ +++ +++ +NN++ T E NS+ L K L+NW K QQD FDFL A I E+K ++ P+K +V+Y+ G K Q ++GL LGL G+Y PGV DL+KEYF ++ID ET+TS+LF Y +P+VLI+HIQAN+WD + +M KP Y+I+YE+ + KV T E+ Y L AVI+H G IS+GHY+T RKF+D W LAND Q+E F+ DVCP Sbjct: 37 GLRNMNENCYMNSLIQSLASSDKIINQFKELQKIDGEHKLVDLLIDILTSVNNSESTP--EENSSKLMKFSELMNWGKDRQQDTFDFLCAIIKNIQLEIKDKSM-FQCPLKIKVMYKITGMEIPNKTQDHLGLSLGLCGNYSVSPGVLFDDLVKEYFTATLIDDDETKTSQLFIYGNVPDVLIIHIQANKWDSNLGEMYKPKYHIIYEKYPNISF--KVMSTSNEMMEINYTYDLHAVIYHMGEISSGHYITYRKFQDKWFLANDTQIEEVLFNCDVCP 310
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Planmine SMEST
Match: SMESG000057810.1 (SMESG000057810.1) HSP 1 Score: 202.216 bits (513), Expect = 1.921e-59 Identity = 117/271 (43.17%), Postives = 168/271 (61.99%), Query Frame = 3 Query: 966 CYMNSTMQALASSEKVLQFIDQTKEFLNGSEILMTFSNLIEGLNNTDGTGSVEXXXXXXXXXXXXXXXXXXXQQDAFDFLTATTNAIHNEMKKMNIKIDLPMKSEVIYQTLGSHASEKAQYNIGLHLGLSGHYQERPGVELVDLIKEYFAISIIDGKETETSRLFFYKQIPNVLILHIQANRWDMEMNKMVKPTYYILYEENMKLELPVKVERTDVELRLEKCEYSLVAVIHHSGTISNGHYVTNRKFKDSWLLANDIQVEAAKFDPDVCP 1778 CYMNS +Q+LASS+K++ + ++ +++ +++ +NN++ T E NS+ L K L+NW K QQD FDFL A I E+K ++ P+K +V+Y+ G K Q ++GL LGL G+Y PGV DL+KEYF ++ID ET+TS+LF Y +P+VLI+HIQAN+WD + +M KP Y+I+YE+ + KV T E+ Y L AVI+H G IS+GHY+T RKF+D W LAND Q+E F+ DVCP Sbjct: 5 CYMNSLIQSLASSDKIINQFKELQKIDGEHKLVDLLIDILTSVNNSESTP--EENSSKLMKFSELMNWGKDRQQDTFDFLCAIIKNIQLEIKDKSM-FQCPLKIKVMYKITGMEIPNKTQDHLGLSLGLCGNYSVSPGVLFDDLVKEYFTATLIDDDETKTSQLFIYGNVPDVLIIHIQANKWDSNLGEMYKPKYHIIYEKYPNISF--KVMSTSNEMMEINYTYDLHAVIYHMGEISSGHYITYRKFQDKWFLANDTQIEEVLFNCDVCP 270
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Planmine SMEST
Match: SMESG000057792.1 (SMESG000057792.1) HSP 1 Score: 199.134 bits (505), Expect = 2.436e-57 Identity = 115/281 (40.93%), Postives = 174/281 (61.92%), Query Frame = 3 Query: 942 GLENVTNECYMNSTMQALASSEKVLQFIDQTKEFLNGSEILMTFSNLIEGLNNTDGT-GSVEXXXXXXXXXXXXXXXXXXXQQDAFDFLTATTNAIHNEMKKMNIK-IDLPMKSEVIYQTLGSHASEKAQYNIGLHLGLSGHYQERPGVELVDLIKEYFAISIIDGKETETSRLFFYKQIPNVLILHIQANRWDMEMNKMVKPTYYILYEENMKLELPVKVERTDVELRLEKCEYSLVAVIHHSGTISNGHYVTNRKFKDSWLLANDIQVEAAKFDPDVCP 1778 G +N+ CYMN+ +QA ASS+ ++ E S L F +++ G+N D + + N+N L+ LI L+NW+K NQQDAF+ TA I +E K NI I++P+K +++Y+ G ++ QY++GL LGLSG Y+ +PGV L LI E+F+ ++IDG +TS+LFF K P+VL+LHIQAN+WD KM+KP Y+I+Y++ M + + ++ Y L AV+ H GTIS GHYV RK++++W L +D QVE +F ++CP Sbjct: 66 GFKNLAETCYMNAIIQAAASSQILISQFQHLHETYKESMSLKCFYDVLIGVNTPDDSYVRLCKNTNQLETLIRLVNWTKTNQQDAFELFTALIKGISDEFKAQNIDDIEMPLKLKMVYRFKGLDIPDRTQYHLGLSLGLSGPYETKPGVTLEFLILEHFSPTLIDGDPNKTSQLFFLKGAPDVLLLHIQANKWDSVKEKMIKPKYHIVYDQEMTIWFDIITALNKDNVKRISVTYRLTAVVQHMGTISGGHYVAYRKWRNNWYLVSDEQVELMEFSGNICP 346
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Planmine SMEST
Match: SMESG000057810.1 (SMESG000057810.1) HSP 1 Score: 196.052 bits (497), Expect = 3.251e-57 Identity = 115/269 (42.75%), Postives = 166/269 (61.71%), Query Frame = 3 Query: 972 MNSTMQALASSEKVLQFIDQTKEFLNGSEILMTFSNLIEGLNNTDGTGSVEXXXXXXXXXXXXXXXXXXXQQDAFDFLTATTNAIHNEMKKMNIKIDLPMKSEVIYQTLGSHASEKAQYNIGLHLGLSGHYQERPGVELVDLIKEYFAISIIDGKETETSRLFFYKQIPNVLILHIQANRWDMEMNKMVKPTYYILYEENMKLELPVKVERTDVELRLEKCEYSLVAVIHHSGTISNGHYVTNRKFKDSWLLANDIQVEAAKFDPDVCP 1778 MNS +Q+LASS+K++ + ++ +++ +++ +NN++ T E NS+ L K L+NW K QQD FDFL A I E+K ++ P+K +V+Y+ G K Q ++GL LGL G+Y PGV DL+KEYF ++ID ET+TS+LF Y +P+VLI+HIQAN+WD + +M KP Y+I+YE+ + KV T E+ Y L AVI+H G IS+GHY+T RKF+D W LAND Q+E F+ DVCP Sbjct: 1 MNSLIQSLASSDKIINQFKELQKIDGEHKLVDLLIDILTSVNNSESTP--EENSSKLMKFSELMNWGKDRQQDTFDFLCAIIKNIQLEIKDKSM-FQCPLKIKVMYKITGMEIPNKTQDHLGLSLGLCGNYSVSPGVLFDDLVKEYFTATLIDDDETKTSQLFIYGNVPDVLIIHIQANKWDSNLGEMYKPKYHIIYEKYPNISF--KVMSTSNEMMEINYTYDLHAVIYHMGEISSGHYITYRKFQDKWFLANDTQIEEVLFNCDVCP 264 The following BLAST results are available for this feature:
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Ubiquitin carboxyl-terminal hydrolase vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30024805 ID=SMED30024805|Name=Ubiquitin carboxyl-terminal hydrolase|organism=Schmidtea mediterranea sexual|type=transcript|length=2156bpback to top protein sequence of SMED30024805-orf-1 >SMED30024805-orf-1 ID=SMED30024805-orf-1|Name=SMED30024805-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=437bp MHVNLPIFRFEMKFPYSLAIFFLFSVFAYPVKGDMSVDVSLRVLLPVVICback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|