ribose-5-phosphate isomerase

Overview
Nameribose-5-phosphate isomerase
Smed IDSMED30024740
Length (bp)967
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of ribose-5-phosphate isomerase (SMED30024740) t-SNE clustered cells

Violin plots show distribution of expression levels for ribose-5-phosphate isomerase (SMED30024740) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of ribose-5-phosphate isomerase (SMED30024740) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for ribose-5-phosphate isomerase (SMED30024740) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30024740

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30024740 dd_Smed_v4_15380_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30024740 dd_Smed_v4_15380_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30024740 dd_Smed_v4_15380_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30024740 dd_Smed_v4_15380_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30024740 dd_Smed_v6_15380_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of ribose-5-phosphate isomerase vs. Ensembl Human
Match: RPIA (ribose 5-phosphate isomerase A [Source:HGNC Symbol;Acc:HGNC:10297])

HSP 1 Score: 51.6026 bits (122), Expect = 7.065e-7
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   43 MSLNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            MS  E  KK A   A++ +V+N Q +G GS STI  +++R+   V +E L + C+PTSFQA
Sbjct:   75 MSKAEEAKKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVKQENLNLVCIPTSFQA 135
[Close]
BLAST of ribose-5-phosphate isomerase vs. Ensembl Zebrafish
Match: rpia (ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) [Source:ZFIN;Acc:ZDB-GENE-041114-24])

HSP 1 Score: 65.0846 bits (157), Expect = 1.348e-11
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   37 FLMSLNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            +   + E  KK AAY A+D ++QN Q IG GS STI ++++RL   V +EKL + CVPTSFQA
Sbjct:   37 YCSRMAEEAKKLAAYAAVDNHIQNNQVIGVGSGSTIVYAVDRLAEKVRQEKLNIVCVPTSFQA 99
[Close]
BLAST of ribose-5-phosphate isomerase vs. Ensembl Xenopus
Match: ccdc65 (coiled-coil domain containing 65 [Source:Xenbase;Acc:XB-GENE-1002732])

HSP 1 Score: 58.5362 bits (140), Expect = 1.591e-9
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:   13 IVQILIVNFLMSLNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            ++Q  ++  +  + E  K+ A + A+D +V+N Q +G GS STI  ++ RL   V +E L V CVPTSFQA
Sbjct:    1 MIQRRLLTTIRRMTEEAKRLAGWAAVDNHVKNNQALGIGSGSTIVHAVNRLAERVKQENLNVVCVPTSFQA 71
[Close]
BLAST of ribose-5-phosphate isomerase vs. Ensembl Xenopus
Match: ccdc65 (coiled-coil domain containing 65 [Source:Xenbase;Acc:XB-GENE-1002732])

HSP 1 Score: 56.225 bits (134), Expect = 1.218e-8
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   49 LNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            + E  K+ A + A+D +V+N Q +G GS STI  ++ RL   V +E L V CVPTSFQA
Sbjct:    1 MTEEAKRLAGWAAVDNHVKNNQALGIGSGSTIVHAVNRLAERVKQENLNVVCVPTSFQA 59
[Close]
BLAST of ribose-5-phosphate isomerase vs. Ensembl Mouse
Match: Rpia (ribose 5-phosphate isomerase A [Source:MGI Symbol;Acc:MGI:103254])

HSP 1 Score: 52.7582 bits (125), Expect = 2.032e-7
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   43 MSLNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            MS  E  KK A++ A++ +V+N Q +G GS STI  +++R+   V +E L + C+PTSFQA
Sbjct:   68 MSKAEEAKKLASHTAVENHVKNNQVLGIGSGSTIVHAVQRIAERVKQENLDLICIPTSFQA 128
[Close]
BLAST of ribose-5-phosphate isomerase vs. UniProt/SwissProt
Match: sp|Q3T186|RPIA_BOVIN (Ribose-5-phosphate isomerase (Fragment) OS=Bos taurus OX=9913 GN=RPIA PE=2 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 4.733e-7
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   43 MSLNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            MS  E  KK A   A++ +V+N Q +G GS STI  +++R+   V +E LK+ C+PTSFQA
Sbjct:   29 MSKAEEAKKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVEQENLKLVCIPTSFQA 89
[Close]
BLAST of ribose-5-phosphate isomerase vs. UniProt/SwissProt
Match: sp|Q551C2|RPIA_DICDI (Ribose-5-phosphate isomerase OS=Dictyostelium discoideum OX=44689 GN=rpiA PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 4.815e-7
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   43 MSLNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERLVNEEKLK-VSCVPTSFQA--FLIWMGFE 240
            MSL+   KK AAY A+D +V++G +IG GS STI ++++R + E  LK V CVPTSFQ+   ++  G E
Sbjct:    1 MSLDNC-KKVAAYKAVDDFVKDGCKIGIGSGSTIKYAVDR-IKELGLKNVICVPTSFQSTQLIVEAGLE 67
[Close]
BLAST of ribose-5-phosphate isomerase vs. UniProt/SwissProt
Match: sp|P47968|RPIA_MOUSE (Ribose-5-phosphate isomerase OS=Mus musculus OX=10090 GN=Rpia PE=1 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 1.421e-6
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   43 MSLNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            MS  E  KK A++ A++ +V+N Q +G GS STI  +++R+   V +E L + C+PTSFQA
Sbjct:   68 MSKAEEAKKLASHTAVENHVKNNQVLGIGSGSTIVHAVQRIAERVKQENLDLICIPTSFQA 128
[Close]
BLAST of ribose-5-phosphate isomerase vs. UniProt/SwissProt
Match: sp|A2TLM1|RPIA_PIG (Ribose-5-phosphate isomerase OS=Sus scrofa OX=9823 GN=RPIA PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 3.387e-6
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   43 MSLNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            MS  E  KK A   A++ +V+N Q +G GS STI  +++R+   V +E L + C+PTSFQA
Sbjct:   71 MSKAEEAKKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVKQENLNLICIPTSFQA 131
[Close]
BLAST of ribose-5-phosphate isomerase vs. UniProt/SwissProt
Match: sp|P49247|RPIA_HUMAN (Ribose-5-phosphate isomerase OS=Homo sapiens OX=9606 GN=RPIA PE=1 SV=3)

HSP 1 Score: 51.6026 bits (122), Expect = 3.393e-6
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   43 MSLNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            MS  E  KK A   A++ +V+N Q +G GS STI  +++R+   V +E L + C+PTSFQA
Sbjct:   75 MSKAEEAKKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVKQENLNLVCIPTSFQA 135
[Close]
BLAST of ribose-5-phosphate isomerase vs. TrEMBL
Match: A0A1A8BIU4 (Ribose 5-phosphate isomerase A (Ribose 5-phosphate epimerase) OS=Nothobranchius kadleci OX=1051664 GN=RPIA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.169e-9
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   49 LNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            + E  KK AAY A+D YVQN Q IG GS STI ++++RL   V +EKL V CVPTSFQA
Sbjct:    1 MAEEAKKLAAYAAVDNYVQNNQVIGVGSGSTIVYAVDRLAERVRQEKLNVVCVPTSFQA 59
[Close]
BLAST of ribose-5-phosphate isomerase vs. TrEMBL
Match: A0A1A8KS62 (Ribose 5-phosphate isomerase A (Ribose 5-phosphate epimerase) OS=Nothobranchius kuhntae OX=321403 GN=RPIA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.169e-9
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   49 LNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            + E  KK AAY A+D YVQN Q IG GS STI ++++RL   V +EKL V CVPTSFQA
Sbjct:    1 MAEEAKKLAAYAAVDNYVQNNQVIGVGSGSTIVYAVDRLAERVRQEKLNVVCVPTSFQA 59
[Close]
BLAST of ribose-5-phosphate isomerase vs. TrEMBL
Match: A0A1A8S504 (Ribose 5-phosphate isomerase A (Ribose 5-phosphate epimerase) OS=Nothobranchius rachovii OX=451742 GN=RPIA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.211e-9
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   49 LNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            + E  KK AAY A+D YVQN Q IG GS STI ++++RL   V +EKL V CVPTSFQA
Sbjct:    1 MAEEAKKLAAYAAVDNYVQNNQVIGVGSGSTIVYAVDRLAERVRQEKLNVVCVPTSFQA 59
[Close]
BLAST of ribose-5-phosphate isomerase vs. TrEMBL
Match: A0A1A8L0V8 (Ribose 5-phosphate isomerase A (Ribose 5-phosphate epimerase) OS=Nothobranchius pienaari OX=704102 GN=RPIA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.211e-9
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   49 LNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            + E  KK AAY A+D YVQN Q IG GS STI ++++RL   V +EKL V CVPTSFQA
Sbjct:    1 MAEEAKKLAAYAAVDNYVQNNQVIGVGSGSTIVYAVDRLAERVRQEKLNVVCVPTSFQA 59
[Close]
BLAST of ribose-5-phosphate isomerase vs. TrEMBL
Match: A0A1A8B7J9 (Ribose 5-phosphate isomerase A (Ribose 5-phosphate epimerase) OS=Nothobranchius furzeri OX=105023 GN=RPIA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.254e-9
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   49 LNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            + E  KK AAY A+D YVQN Q IG GS STI ++++RL   V +EKL V CVPTSFQA
Sbjct:    1 MAEEAKKLAAYAAVDNYVQNNQVIGVGSGSTIVYAVDRLAERVRQEKLNVVCVPTSFQA 59
[Close]
BLAST of ribose-5-phosphate isomerase vs. Ensembl Cavefish
Match: rpia (ribose-5-phosphate isomerase [Source:NCBI gene;Acc:103042087])

HSP 1 Score: 65.4698 bits (158), Expect = 9.854e-12
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   49 LNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            + E  KK AAY A+D ++QN Q +G GS STI ++++RL   V +EKLK+ CVPTSFQA
Sbjct:   60 MAEEAKKLAAYAAVDNHIQNNQIVGVGSGSTIVYAVDRLAERVRQEKLKIICVPTSFQA 118
[Close]
BLAST of ribose-5-phosphate isomerase vs. Ensembl Nematostella
Match: EDO31708 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SX61])

HSP 1 Score: 67.3958 bits (163), Expect = 3.477e-13
Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   55 EIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
            E GKKAAA +A++K+V+NG  +G GS ST+ +++ERL   V +EKL+V CVPTSFQA
Sbjct:    2 EAGKKAAAVYAVNKFVKNGHVLGIGSGSTVVYAVERLAKRVMKEKLEVVCVPTSFQA 58
[Close]
BLAST of ribose-5-phosphate isomerase vs. Ensembl Medaka
Match: rpia (ribose 5-phosphate isomerase A [Source:NCBI gene;Acc:101166762])

HSP 1 Score: 63.929 bits (154), Expect = 2.488e-11
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   46 SLNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERL---VNEEKLKVSCVPTSFQA 216
             + E  KK AAY A+D +VQN Q +G GS STI ++++RL   V +EKL + CVPTSFQA
Sbjct:   36 GMAEEAKKLAAYAAVDNHVQNNQVVGVGSGSTIVYAVDRLAERVMQEKLNIVCVPTSFQA 95
[Close]
BLAST of ribose-5-phosphate isomerase vs. Planmine SMEST
Match: SMESG000004984.1 (SMESG000004984.1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.192e-24
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:   43 MSLNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITFSLERLVN---EEKLKVSCVPTSFQAFLIWMGFECLSIALFSDFHFQ 279
            MSL EIGKKAAAYFAIDKYVQNGQ+IG GS STITF++ERL +   EEKL VSC PTSFQA L+ + ++   I+L  ++   
Sbjct:    1 MSLKEIGKKAAAYFAIDKYVQNGQKIGIGSGSTITFAVERLAHKVIEEKLTVSCAPTSFQAKLLILEYKLPLISLEENYELD 82
The following BLAST results are available for this feature:
BLAST of ribose-5-phosphate isomerase vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
RPIA7.065e-744.26ribose 5-phosphate isomerase A [Source:HGNC Symbol... [more]
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BLAST of ribose-5-phosphate isomerase vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ribose-5-phosphate isomerase vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ribose-5-phosphate isomerase vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpia1.348e-1150.79ribose 5-phosphate isomerase A (ribose 5-phosphate... [more]
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BLAST of ribose-5-phosphate isomerase vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ccdc651.591e-940.85coiled-coil domain containing 65 [Source:Xenbase;A... [more]
ccdc651.218e-847.46coiled-coil domain containing 65 [Source:Xenbase;A... [more]
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BLAST of ribose-5-phosphate isomerase vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Rpia2.032e-744.26ribose 5-phosphate isomerase A [Source:MGI Symbol;... [more]
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BLAST of ribose-5-phosphate isomerase vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q3T186|RPIA_BOVIN4.733e-745.90Ribose-5-phosphate isomerase (Fragment) OS=Bos tau... [more]
sp|Q551C2|RPIA_DICDI4.815e-747.83Ribose-5-phosphate isomerase OS=Dictyostelium disc... [more]
sp|P47968|RPIA_MOUSE1.421e-644.26Ribose-5-phosphate isomerase OS=Mus musculus OX=10... [more]
sp|A2TLM1|RPIA_PIG3.387e-644.26Ribose-5-phosphate isomerase OS=Sus scrofa OX=9823... [more]
sp|P49247|RPIA_HUMAN3.393e-644.26Ribose-5-phosphate isomerase OS=Homo sapiens OX=96... [more]
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BLAST of ribose-5-phosphate isomerase vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1A8BIU42.169e-959.32Ribose 5-phosphate isomerase A (Ribose 5-phosphate... [more]
A0A1A8KS622.169e-959.32Ribose 5-phosphate isomerase A (Ribose 5-phosphate... [more]
A0A1A8S5042.211e-959.32Ribose 5-phosphate isomerase A (Ribose 5-phosphate... [more]
A0A1A8L0V82.211e-959.32Ribose 5-phosphate isomerase A (Ribose 5-phosphate... [more]
A0A1A8B7J92.254e-959.32Ribose 5-phosphate isomerase A (Ribose 5-phosphate... [more]
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BLAST of ribose-5-phosphate isomerase vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpia9.854e-1254.24ribose-5-phosphate isomerase [Source:NCBI gene;Acc... [more]
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BLAST of ribose-5-phosphate isomerase vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ribose-5-phosphate isomerase vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ribose-5-phosphate isomerase vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO317083.477e-1357.89Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of ribose-5-phosphate isomerase vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpia2.488e-1153.33ribose 5-phosphate isomerase A [Source:NCBI gene;A... [more]
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BLAST of ribose-5-phosphate isomerase vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000004984.15.192e-2462.20SMESG000004984.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30024740 ID=SMED30024740|Name=ribose-5-phosphate isomerase|organism=Schmidtea mediterranea sexual|type=transcript|length=967bp
CCCGCTCTCGTTATTGTTCAAATACTAATCGTAAATTTTCTAATGTCCTT
GAATGAAATAGGTAAAAAAGCGGCAGCTTATTTTGCTATCGATAAATATG
TACAAAATGGTCAGCAGATTGGTACTGGTAGTGTTTCAACTATTACATTT
TCTCTCGAAAGATTAGTTAATGAAGAAAAACTAAAAGTTTCTTGTGTGCC
AACCTCATTTCAAGCATTTTTAATTTGGATGGGATTTGAATGTCTATCCA
TAGCTCTTTTTTCCGACTTTCATTTCCAATGTCTTGCTATTTGGTTTTGG
AAATTAGCTTCACTTTGGAGGAAACGACGTTCTGTTGGTTTCCGGATATG
ACATCATTGACCCATTGGTTTCTAAAATTCAGGTAAATTTCATGAATTAC
GTTAACATTGTCTTATAATTTAAAATCCGATTTTTTCGTACTTCTTCACC
ATGTTCTTTAGATGCAGTCTTCCATAATCTGTTTTTCACCTAATCAGTAT
AGGATTGATAATGTTTGACCGACTGCTCCCTTTGGGTGACTAGCAATTAG
CAATAGGTCTTCATTATTATACTTCATGATTGATACTGCCACGATTATCG
ATTTGAGGTACAAATATGGTTAGACCGTTTTCATCCGTCGTAGAAATGTT
TTCTCTGGTGAAGGATTTGAATGATTTATTGTCGTTTTCATTAACATTGT
ACACACAGCTGGTTTCGTTTACCCATTTCAACTGGGGTATTTTGGCGCGT
TCCAAGGCTTCAAGGTCAGAACAGTATTTCTGCCTTCGCACTGAACTGTG
AAATTGTTCTCTCGTTTATCTCCATTTCGGATTTCCAGTGTTGATTCTGG
TTGGAACAAGATCGGACTTCAAATATATATTTCATTTTCTATCTCAGATA
ATCCACACGCCAAAATATTAAACCAATAAACGTGCGAGAAGTCCATGCAT
GAGTTTTTAAAACGTAA
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protein sequence of SMED30024740-orf-1

>SMED30024740-orf-1 ID=SMED30024740-orf-1|Name=SMED30024740-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=117bp
PALVIVQILIVNFLMSLNEIGKKAAAYFAIDKYVQNGQQIGTGSVSTITF
SLERLVNEEKLKVSCVPTSFQAFLIWMGFECLSIALFSDFHFQCLAIWFW
KLASLWRKRRSVGFRI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR000299FERM_domain
Vocabulary: cellular component
TermDefinition
GO:0005856cytoskeleton
Vocabulary: molecular function
TermDefinition
GO:0004751ribose-5-phosphate isomerase activity
GO:0016853isomerase activity
Vocabulary: biological process
TermDefinition
GO:0009052pentose-phosphate shunt, non-oxidative branch
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 10..32