Transcription initiation factor IIA subunit 1-like protein 1

Overview
NameTranscription initiation factor IIA subunit 1-like protein 1
Smed IDSMED30024739
Length (bp)1517
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Transcription initiation factor IIA subunit 1-like protein 1 (SMED30024739) t-SNE clustered cells

Violin plots show distribution of expression levels for Transcription initiation factor IIA subunit 1-like protein 1 (SMED30024739) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Transcription initiation factor IIA subunit 1-like protein 1 (SMED30024739) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Transcription initiation factor IIA subunit 1-like protein 1 (SMED30024739) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30024739

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30024739 dd_Smed_v4_868_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30024739 dd_Smed_v4_868_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Category 2 cellSMED30024739 dd_Smed_v6_868_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Human
Match: GTF2A1 (general transcription factor IIA subunit 1 [Source:HGNC Symbol;Acc:HGNC:4646])

HSP 1 Score: 92.4337 bits (228), Expect = 5.827e-20
Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D +F KA+G+AEW
Sbjct:  275 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 337
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Human
Match: GTF2A1 (general transcription factor IIA subunit 1 [Source:HGNC Symbol;Acc:HGNC:4646])

HSP 1 Score: 92.4337 bits (228), Expect = 1.045e-19
Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D +F KA+G+AEW
Sbjct:  314 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Human
Match: GTF2A1L (general transcription factor IIA subunit 1 like [Source:HGNC Symbol;Acc:HGNC:30727])

HSP 1 Score: 83.5741 bits (205), Expect = 1.852e-16
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+S+ D   +F+TDNVIVCQY+K++R++NKWK     G+    G+D VF KA+G+AEW
Sbjct:  416 LNSGDDVSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVFAKAIGDAEW 478

HSP 2 Score: 50.447 bits (119), Expect = 5.506e-6
Identity = 31/91 (34.07%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:   91 FYSNVINEVIDSLKTQFNEEGIDPAVLNDLKEIWEKKIKDSGALEPIKHPVQSASHFSNMMQPNDITRNNAVRL-QTMSNPSSRLIKPSGQ 360
             Y +VI +VI+ ++  F EEGI+  VL DLK++WE K+  S A E           F N +Q    T      L QT+ + ++ L+ P+G+
Sbjct:   10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDF---------FRNSIQSPLFTLQLPHSLHQTLQSSTASLVIPAGR 91
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Human
Match: GTF2A1L (general transcription factor IIA subunit 1 like [Source:HGNC Symbol;Acc:HGNC:30727])

HSP 1 Score: 82.0333 bits (201), Expect = 4.130e-16
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+S+ D   +F+TDNVIVCQY+K++R++NKWK     G+    G+D VF KA+G+AEW
Sbjct:  382 LNSGDDVSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVFAKAIGDAEW 444
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Human
Match: STON1-GTF2A1L (STON1-GTF2A1L readthrough [Source:HGNC Symbol;Acc:HGNC:30651])

HSP 1 Score: 83.1889 bits (204), Expect = 4.496e-16
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+S+ D   +F+TDNVIVCQY+K++R++NKWK     G+    G+D VF KA+G+AEW
Sbjct: 1120 LNSGDDVSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVFAKAIGDAEW 1182

HSP 2 Score: 50.8322 bits (120), Expect = 6.124e-6
Identity = 31/91 (34.07%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:   91 FYSNVINEVIDSLKTQFNEEGIDPAVLNDLKEIWEKKIKDSGALEPIKHPVQSASHFSNMMQPNDITRNNAVRL-QTMSNPSSRLIKPSGQ 360
             Y +VI +VI+ ++  F EEGI+  VL DLK++WE K+  S A E           F N +Q    T      L QT+ + ++ L+ P+G+
Sbjct:  714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATE---------DFFRNSIQSPLFTLQLPHSLHQTLQSSTASLVIPAGR 795
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Celegans
Match: pqn-51 (Prion-like-(Q/N-rich)-domain-bearing protein [Source:UniProtKB/TrEMBL;Acc:O44625])

HSP 1 Score: 68.5514 bits (166), Expect = 2.430e-12
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 
Query: 1084 IFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            +FE DNV++CQ+EKVNR R KWK     GI ++  KD  F K  GEAEW
Sbjct:  306 LFEADNVVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 354
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Celegans
Match: pqn-51 (Prion-like-(Q/N-rich)-domain-bearing protein [Source:UniProtKB/TrEMBL;Acc:O44625])

HSP 1 Score: 68.5514 bits (166), Expect = 2.430e-12
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 
Query: 1084 IFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            +FE DNV++CQ+EKVNR R KWK     GI ++  KD  F K  GEAEW
Sbjct:  306 LFEADNVVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 354
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Celegans
Match: pqn-51 (Prion-like-(Q/N-rich)-domain-bearing protein [Source:UniProtKB/TrEMBL;Acc:O44625])

HSP 1 Score: 68.5514 bits (166), Expect = 2.430e-12
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 
Query: 1084 IFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            +FE DNV++CQ+EKVNR R KWK     GI ++  KD  F K  GEAEW
Sbjct:  306 LFEADNVVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 354
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Celegans
Match: pqn-51 (Prion-like-(Q/N-rich)-domain-bearing protein [Source:UniProtKB/TrEMBL;Acc:O44625])

HSP 1 Score: 68.5514 bits (166), Expect = 2.430e-12
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 
Query: 1084 IFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            +FE DNV++CQ+EKVNR R KWK     GI ++  KD  F K  GEAEW
Sbjct:  306 LFEADNVVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 354
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Fly
Match: TfIIA-L (gene:FBgn0011289 transcript:FBtr0085154)

HSP 1 Score: 92.8189 bits (229), Expect = 1.834e-20
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD++D+D  ++F+TDNVIVCQY+K+ R+RNKWK     GI N+ GKD VF K+ G+AEW
Sbjct:  262 LNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNGDAEW 324
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Fly
Match: TfIIA-L (gene:FBgn0011289 transcript:FBtr0085156)

HSP 1 Score: 92.4337 bits (228), Expect = 3.750e-20
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD++D+D  ++F+TDNVIVCQY+K+ R+RNKWK     GI N+ GKD VF K+ G+AEW
Sbjct:  301 LNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNGDAEW 363
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Fly
Match: TfIIA-L (gene:FBgn0011289 transcript:FBtr0085155)

HSP 1 Score: 92.4337 bits (228), Expect = 3.842e-20
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD++D+D  ++F+TDNVIVCQY+K+ R+RNKWK     GI N+ GKD VF K+ G+AEW
Sbjct:  304 LNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNGDAEW 366
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Zebrafish
Match: gtf2a1 (general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694])

HSP 1 Score: 89.7373 bits (221), Expect = 4.145e-19
Identity = 35/63 (55.56%), Postives = 54/63 (85.71%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+SD++ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D VF KA+G+AEW
Sbjct:  307 LNSGDDVSDEEDQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVFSKAIGDAEW 369
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Zebrafish
Match: gtf2a1l (general transcription factor IIA, 1-like [Source:ZFIN;Acc:ZDB-GENE-060929-28])

HSP 1 Score: 84.3445 bits (207), Expect = 3.189e-17
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+S+ D  +IF+T+NVIVCQY+K++R++N+WK     G+    GKD VF KAVGEAEW
Sbjct:  314 LNSGDDVSEQDIPEIFDTENVIVCQYDKIHRSKNRWKFYLKDGVMCYGGKDYVFSKAVGEAEW 376
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Xenopus
Match: scnm1 (sodium channel modifier 1 [Source:Xenbase;Acc:XB-GENE-921392])

HSP 1 Score: 93.5893 bits (231), Expect = 3.935e-20
Identity = 36/63 (57.14%), Postives = 55/63 (87.30%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D VF KA+G+AEW
Sbjct:  305 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVFSKAIGDAEW 367
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Xenopus
Match: scnm1 (sodium channel modifier 1 [Source:Xenbase;Acc:XB-GENE-921392])

HSP 1 Score: 93.2041 bits (230), Expect = 4.492e-20
Identity = 36/63 (57.14%), Postives = 55/63 (87.30%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D VF KA+G+AEW
Sbjct:  301 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVFSKAIGDAEW 363
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Xenopus
Match: rgs5 (regulator of G-protein signaling 5 [Source:Xenbase;Acc:XB-GENE-971917])

HSP 1 Score: 85.1149 bits (209), Expect = 4.045e-17
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+S+ +   +F+TDNVIVCQY+K++R++NKWK     G+ +  GKD VF KA+GEAEW
Sbjct:  410 LNSGDDVSEQEVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMSFGGKDYVFSKAIGEAEW 472
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Xenopus
Match: rgs5 (regulator of G-protein signaling 5 [Source:Xenbase;Acc:XB-GENE-971917])

HSP 1 Score: 85.1149 bits (209), Expect = 4.270e-17
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+S+ +   +F+TDNVIVCQY+K++R++NKWK     G+ +  GKD VF KA+GEAEW
Sbjct:  408 LNSGDDVSEQEVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMSFGGKDYVFSKAIGEAEW 470
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Xenopus
Match: rgs5 (regulator of G-protein signaling 5 [Source:Xenbase;Acc:XB-GENE-971917])

HSP 1 Score: 84.3445 bits (207), Expect = 7.236e-17
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+S+ +   +F+TDNVIVCQY+K++R++NKWK     G+ +  GKD VF KA+GEAEW
Sbjct:  376 LNSGDDVSEQEVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMSFGGKDYVFSKAIGEAEW 438
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Mouse
Match: Gtf2a1 (general transcription factor II A, 1 [Source:MGI Symbol;Acc:MGI:1933277])

HSP 1 Score: 92.0485 bits (227), Expect = 5.440e-20
Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D +F KA+G+AEW
Sbjct:  277 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 339
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Mouse
Match: Gtf2a1 (general transcription factor II A, 1 [Source:MGI Symbol;Acc:MGI:1933277])

HSP 1 Score: 92.0485 bits (227), Expect = 8.982e-20
Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D +F KA+G+AEW
Sbjct:  316 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 378
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Mouse
Match: Gtf2a1l (general transcription factor IIA, 1-like [Source:MGI Symbol;Acc:MGI:1919078])

HSP 1 Score: 82.4185 bits (202), Expect = 2.434e-16
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+S+ D   +F+T+NVIVCQY+K++R++N+WK     G+    G+D VF KA+GEAEW
Sbjct:  406 LNSGDDVSEQDVPDLFDTENVIVCQYDKIHRSKNRWKFYLKDGVMCFGGRDYVFAKAIGEAEW 468
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Mouse
Match: Gtf2a1l (general transcription factor IIA, 1-like [Source:MGI Symbol;Acc:MGI:1919078])

HSP 1 Score: 50.0618 bits (118), Expect = 2.206e-6
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:   91 FYSNVINEVIDSLKTQFNEEGIDPAVLNDLKEIWEKKIKDSGALE 225
             Y +VI +VI+ ++  F EEGI+  VL DLK++WE K+  S A E
Sbjct:   10 LYQSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKVLQSKATE 54
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. UniProt/SwissProt
Match: sp|P52654|TF2AA_DROME (Transcription initiation factor IIA subunit 1 OS=Drosophila melanogaster OX=7227 GN=TfIIA-L PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.851e-19
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD++D+D  ++F+TDNVIVCQY+K+ R+RNKWK     GI N+ GKD VF K+ G+AEW
Sbjct:  304 LNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNGDAEW 366
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. UniProt/SwissProt
Match: sp|P52655|TF2AA_HUMAN (Transcription initiation factor IIA subunit 1 OS=Homo sapiens OX=9606 GN=GTF2A1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.018e-19
Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D +F KA+G+AEW
Sbjct:  314 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. UniProt/SwissProt
Match: sp|Q5RCU0|TF2AA_PONAB (Transcription initiation factor IIA subunit 1 OS=Pongo abelii OX=9601 GN=GTF2A1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.456e-19
Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D +F KA+G+AEW
Sbjct:  314 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. UniProt/SwissProt
Match: sp|O08949|TF2AA_RAT (Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus OX=10116 GN=Gtf2a1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.105e-19
Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D +F KA+G+AEW
Sbjct:  315 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 377
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. UniProt/SwissProt
Match: sp|Q99PM3|TF2AA_MOUSE (Transcription initiation factor IIA subunit 1 OS=Mus musculus OX=10090 GN=Gtf2a1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 6.283e-19
Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D +F KA+G+AEW
Sbjct:  316 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 378
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. TrEMBL
Match: A0A131ZUX2 (Transcription initiation factor IIA subunit 1-like protein 1 OS=Sarcoptes scabiei OX=52283 GN=QR98_0010120 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 6.200e-22
Identity = 43/63 (68.25%), Postives = 54/63 (85.71%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD+SD+DP ++FETDNV+VCQY+K+ R+RNKWK +F  GI NL GKD VF +AVG+AEW
Sbjct:   77 LNSEDDVSDEDPVELFETDNVVVCQYDKITRSRNKWKFHFKDGIMNLQGKDYVFSRAVGDAEW 139
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. TrEMBL
Match: A0A0A9WKQ5 (Transcription initiation factor IIA subunit 1 (Fragment) OS=Lygus hesperus OX=30085 GN=TfIIA-L_1 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.211e-20
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD+S++DP ++FETDNV+VCQY+K+ RTRNKWK  F  GI NL GKD VF K+ G+AEW
Sbjct:   39 LNSEDDVSEEDPLELFETDNVVVCQYDKITRTRNKWKFYFKDGIMNLSGKDYVFQKSNGDAEW 101
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. TrEMBL
Match: A0A1I8JJQ0 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.538e-20
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+SD+D +++FETDN++VCQY+K+NR RNKWK +   GI NL+GKD VF KA G+AEW
Sbjct:   43 LNSADDVSDEDSDRLFETDNIVVCQYDKINRARNKWKFHLKDGIMNLNGKDFVFQKATGDAEW 105
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. TrEMBL
Match: A0A1I8I5A6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.275e-20
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+SD+D +++FETDN++VCQY+K+NR RNKWK +   GI NL+GKD VF KA G+AEW
Sbjct:   58 LNSADDVSDEDSDRLFETDNIVVCQYDKINRARNKWKFHLKDGIMNLNGKDFVFQKATGDAEW 120
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. TrEMBL
Match: A0A087U3U0 (Transcription initiation factor IIA subunit 1 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_15407 PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.337e-20
Identity = 39/63 (61.90%), Postives = 54/63 (85.71%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS+DD+S+DDP  +F+T+NV+VCQY+K+NR++NKWK +   GI NL GKD VFHKA+G++EW
Sbjct:  169 LNSDDDVSEDDPTDLFDTENVVVCQYDKINRSKNKWKFHLKDGIMNLQGKDFVFHKALGDSEW 231
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Cavefish
Match: gtf2a1 (general transcription factor IIA subunit 1 [Source:NCBI gene;Acc:103036178])

HSP 1 Score: 89.7373 bits (221), Expect = 3.019e-19
Identity = 35/63 (55.56%), Postives = 54/63 (85.71%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+SD++ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D VF KA+G+AEW
Sbjct:  292 LNSGDDVSDEEDQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVFSKAIGDAEW 354
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Cavefish
Match: gtf2a1 (general transcription factor IIA subunit 1 [Source:NCBI gene;Acc:103036178])

HSP 1 Score: 90.1225 bits (222), Expect = 3.848e-19
Identity = 35/63 (55.56%), Postives = 54/63 (85.71%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+SD++ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D VF KA+G+AEW
Sbjct:  323 LNSGDDVSDEEDQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVFSKAIGDAEW 385
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Sea Lamprey
Match: gtf2a1 (general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694])

HSP 1 Score: 94.3597 bits (233), Expect = 2.498e-21
Identity = 37/63 (58.73%), Postives = 53/63 (84.13%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNSEDD+SD++  ++FETDNV+VCQY+K++R++NKWK +   GI NL+G+D VF +A G+AEW
Sbjct:  306 LNSEDDVSDEEGTELFETDNVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVFSRATGDAEW 368

HSP 2 Score: 50.0618 bits (118), Expect = 6.470e-7
Identity = 31/101 (30.69%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:   82 ASGFYSNVINEVIDSLKTQFNEEGIDPAVLNDLKEIWEKKIKDSGALEPIKHPVQSASHFSNMMQPNDITRNNAVRLQTMSNPSSRLIKP-SGQGSVMPDQ 381
            A   Y+ VI +V+ +LK  F +EG+D  VL +LK++WE K+  S ALE ++   Q     +   QP+   +          +P+  +++P +    V+PDQ
Sbjct:   10 APKLYTAVIEDVVQNLKDIFLDEGVDEHVLQELKQLWESKLMQSKALESLQQ--QENLMIARAQQPHPQNKK--------PSPTVAVVRPQTTAAGVLPDQ 100
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Sea Lamprey
Match: gtf2a1l (general transcription factor IIA, 1-like [Source:ZFIN;Acc:ZDB-GENE-060929-28])

HSP 1 Score: 81.6481 bits (200), Expect = 3.934e-17
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+S+ D  ++F+ DNV+VCQY+K++R++NKWK +F  GI NL G D  F K  G+AEW
Sbjct:  311 LNSGDDVSEQDNSEMFDVDNVVVCQYDKIHRSKNKWKFHFKDGIMNLDGLDYFFSKLAGDAEW 373
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Sea Lamprey
Match: gtf2a1l (general transcription factor IIA, 1-like [Source:ZFIN;Acc:ZDB-GENE-060929-28])

HSP 1 Score: 81.2629 bits (199), Expect = 5.091e-17
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+S+ D  ++F+ DNV+VCQY+K++R++NKWK +F  GI NL G D  F K  G+AEW
Sbjct:  309 LNSGDDVSEQDNSEMFDVDNVVVCQYDKIHRSKNKWKFHFKDGIMNLDGLDYFFSKLAGDAEW 371
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Sea Lamprey
Match: gtf2a1l (general transcription factor IIA, 1-like [Source:ZFIN;Acc:ZDB-GENE-060929-28])

HSP 1 Score: 81.2629 bits (199), Expect = 5.510e-17
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+S+ D  ++F+ DNV+VCQY+K++R++NKWK +F  GI NL G D  F K  G+AEW
Sbjct:  312 LNSGDDVSEQDNSEMFDVDNVVVCQYDKIHRSKNKWKFHFKDGIMNLDGLDYFFSKLAGDAEW 374
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Yeast
Match: TOA1 (TFIIA large subunit; involved in transcriptional activation, acts as antirepressor or as coactivator; required, along with Toa2p, for ribosomal protein gene transcription in vivo; homologous to largest and second largest subunits of human and Drosophila TFIIA [Source:SGD;Acc:S000005720])

HSP 1 Score: 49.6766 bits (117), Expect = 4.636e-7
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 1 
Query: 1042 LNSEDDISDDD-----PEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            + SE D SDDD      E+    +N+++C Y+KV RT+ +WK +   G+  ++  D  F KA  EAEW
Sbjct:  218 VGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 285
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Medaka
Match: gtf2a1 (general transcription factor IIA subunit 1 [Source:NCBI gene;Acc:101171124])

HSP 1 Score: 89.3521 bits (220), Expect = 6.235e-19
Identity = 35/63 (55.56%), Postives = 54/63 (85.71%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+SDD+ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D VF K++G+AEW
Sbjct:  320 LNSGDDVSDDENQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVFSKSIGDAEW 382
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Medaka
Match: gtf2a1 (general transcription factor IIA subunit 1 [Source:NCBI gene;Acc:101171124])

HSP 1 Score: 88.9669 bits (219), Expect = 9.534e-19
Identity = 35/63 (55.56%), Postives = 54/63 (85.71%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+SDD+ +++F+T+NV+VCQY+K++R++NKWK +   GI NL+G+D VF K++G+AEW
Sbjct:  320 LNSGDDVSDDENQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVFSKSIGDAEW 382
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Medaka
Match: gtf2a1l (stonin-1 [Source:NCBI gene;Acc:101160018])

HSP 1 Score: 82.0333 bits (201), Expect = 2.522e-16
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+ + D   +F+TDNVIVCQY+K++R++N+WK +   G+    G+D VF KAVGEAEW
Sbjct:  374 LNSGDDVVEQDIPDLFDTDNVIVCQYDKIHRSKNRWKFHLKDGVICYGGRDYVFSKAVGEAEW 436
[Close]
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Medaka
Match: gtf2a1l (stonin-1 [Source:NCBI gene;Acc:101160018])

HSP 1 Score: 80.4925 bits (197), Expect = 6.776e-16
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 
Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230
            LNS DD+ + D   +F+TDNVIVCQY+K++R++N+WK +   G+    G+D VF KAVGEAEW
Sbjct:  352 LNSGDDVVEQDIPDLFDTDNVIVCQYDKIHRSKNRWKFHLKDGVICYGGRDYVFSKAVGEAEW 414
The following BLAST results are available for this feature:
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
GTF2A15.827e-2055.56general transcription factor IIA subunit 1 [Source... [more]
GTF2A11.045e-1955.56general transcription factor IIA subunit 1 [Source... [more]
GTF2A1L1.852e-1653.97general transcription factor IIA subunit 1 like [S... [more]
GTF2A1L4.130e-1653.97general transcription factor IIA subunit 1 like [S... [more]
STON1-GTF2A1L4.496e-1653.97STON1-GTF2A1L readthrough [Source:HGNC Symbol;Acc:... [more]
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BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4
Match NameE-valueIdentityDescription
pqn-512.430e-1255.10Prion-like-(Q/N-rich)-domain-bearing protein [Sou... [more]
pqn-512.430e-1255.10Prion-like-(Q/N-rich)-domain-bearing protein [Sou... [more]
pqn-512.430e-1255.10Prion-like-(Q/N-rich)-domain-bearing protein [Sou... [more]
pqn-512.430e-1255.10Prion-like-(Q/N-rich)-domain-bearing protein [Sou... [more]
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BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
TfIIA-L1.834e-2060.32gene:FBgn0011289 transcript:FBtr0085154[more]
TfIIA-L3.750e-2060.32gene:FBgn0011289 transcript:FBtr0085156[more]
TfIIA-L3.842e-2060.32gene:FBgn0011289 transcript:FBtr0085155[more]
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BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
gtf2a14.145e-1955.56general transcription factor IIA, 1 [Source:ZFIN;A... [more]
gtf2a1l3.189e-1757.14general transcription factor IIA, 1-like [Source:Z... [more]
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BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
scnm13.935e-2057.14sodium channel modifier 1 [Source:Xenbase;Acc:XB-G... [more]
scnm14.492e-2057.14sodium channel modifier 1 [Source:Xenbase;Acc:XB-G... [more]
rgs54.045e-1755.56regulator of G-protein signaling 5 [Source:Xenbase... [more]
rgs54.270e-1755.56regulator of G-protein signaling 5 [Source:Xenbase... [more]
rgs57.236e-1755.56regulator of G-protein signaling 5 [Source:Xenbase... [more]
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BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Gtf2a15.440e-2055.56general transcription factor II A, 1 [Source:MGI S... [more]
Gtf2a18.982e-2055.56general transcription factor II A, 1 [Source:MGI S... [more]
Gtf2a1l2.434e-1652.38general transcription factor IIA, 1-like [Source:M... [more]
Gtf2a1l2.206e-646.67general transcription factor IIA, 1-like [Source:M... [more]
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BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P52654|TF2AA_DROME3.851e-1960.32Transcription initiation factor IIA subunit 1 OS=D... [more]
sp|P52655|TF2AA_HUMAN5.018e-1955.56Transcription initiation factor IIA subunit 1 OS=H... [more]
sp|Q5RCU0|TF2AA_PONAB5.456e-1955.56Transcription initiation factor IIA subunit 1 OS=P... [more]
sp|O08949|TF2AA_RAT6.105e-1955.56Transcription initiation factor IIA subunit 1 OS=R... [more]
sp|Q99PM3|TF2AA_MOUSE6.283e-1955.56Transcription initiation factor IIA subunit 1 OS=M... [more]
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BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A131ZUX26.200e-2268.25Transcription initiation factor IIA subunit 1-like... [more]
A0A0A9WKQ52.211e-2066.67Transcription initiation factor IIA subunit 1 (Fra... [more]
A0A1I8JJQ03.538e-2063.49Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8I5A66.275e-2063.49Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A087U3U06.337e-2061.90Transcription initiation factor IIA subunit 1 (Fra... [more]
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BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
gtf2a13.019e-1955.56general transcription factor IIA subunit 1 [Source... [more]
gtf2a13.848e-1955.56general transcription factor IIA subunit 1 [Source... [more]
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BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 4
Match NameE-valueIdentityDescription
gtf2a12.498e-2158.73general transcription factor IIA, 1 [Source:ZFIN;A... [more]
gtf2a1l3.934e-1753.97general transcription factor IIA, 1-like [Source:Z... [more]
gtf2a1l5.091e-1753.97general transcription factor IIA, 1-like [Source:Z... [more]
gtf2a1l5.510e-1753.97general transcription factor IIA, 1-like [Source:Z... [more]
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BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
TOA14.636e-738.24TFIIA large subunit; involved in transcriptional a... [more]
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BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
gtf2a16.235e-1955.56general transcription factor IIA subunit 1 [Source... [more]
gtf2a19.534e-1955.56general transcription factor IIA subunit 1 [Source... [more]
gtf2a1l2.522e-1653.97stonin-1 [Source:NCBI gene;Acc:101160018][more]
gtf2a1l6.776e-1653.97stonin-1 [Source:NCBI gene;Acc:101160018][more]
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BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30024739 ID=SMED30024739|Name=Transcription initiation factor IIA subunit 1-like protein 1|organism=Schmidtea mediterranea sexual|type=transcript|length=1517bp
ATTTGTTTAACTAATCCAATTTGTAAATAGAAGTTTAAAATCTTCAGTTA
GTATATAAATAAATCTACATTACTTATGGCTGCATCAGGTTTTTATTCAA
ATGTTATTAATGAAGTTATTGATAGCCTTAAAACTCAATTTAATGAAGAG
GGTATTGATCCTGCAGTATTAAATGATCTAAAAGAAATTTGGGAGAAAAA
AATTAAAGACAGTGGTGCACTAGAGCCAATTAAGCATCCTGTTCAATCGG
CTTCTCATTTTTCAAACATGATGCAACCAAATGATATTACTAGAAACAAT
GCTGTTCGATTACAAACTATGAGCAATCCATCATCACGATTAATAAAGCC
ATCTGGTCAGGGATCTGTAATGCCTGACCAAAATTACAATGCACCTAGGA
TGACGGTTCCAGTCTTAGTTCAACAGGGAAATAATACTTTTAGACCAGCT
AATTCATTCATGAGCAATTTCTCCCAGAATAGTAACCATATAAATGACAT
GTATCCATCATCTAATCCATATCGGATGCACCCGTTTCAAAATTGTGATT
ATTTATTTGGTCAATGGCTTAAAAATGACCGATTGAGGAATGTTGATAAG
TCCAAGCCACCAATTAATTACCGAAATGAATCAGTTCCTATGGTTATAAA
CACAAATGCTCAGCACGGAATCCCGATGTTCTCTCAATATCACAATATTA
TCAACCCTAATCAAATCATTACCGATAACAACAATATCGTTAATTTGAGA
AAAAATCAAGTTGACGGAAATGACGATGGCAGCAGCGATGACGAGGAGAA
CGATTTCGTTAACGTTTCTGAGGTTGATCCTCAGTCGGTTCGTCCGCCAA
TGAGCAACATTCCAACTCCTGCCGTTTTCAAAAAGGAAACAAAAGAAGAG
GAAACCGACGAGGAATTAGTTGAGGATGAAATTGAGCAATTGAATCATCA
CGATTTGTCAGTGAAACACGAGCAGACAGATGAGGAAGACAATGAAGATG
ATGACGATGAAGTCGAAGAGCCACAGAACGAGGAGGAACCGCTCAATTCC
GAGGACGATATTAGTGACGACGACCCAGAGAAAATATTCGAAACAGATAA
TGTTATCGTTTGCCAATATGAGAAAGTGAACCGGACGCGCAACAAGTGGA
AGCTCAATTTCGTCAGCGGCATTGCCAATCTGCACGGCAAAGATTCAGTG
TTCCATAAAGCCGTTGGCGAGGCAGAATGGTGATTCTTTATCAGCTGGGA
TGTGTGTAGAAAAATTATTAAAAGTTGCAATTGCCATCTTATTTGGATTG
GATCAATCTAATAAATATGTTTGAATGACTTTGTTTTCTATATTGCGATT
TGATTGGTCCTTGTGCGGTTTTAATTTATATTGATTGGTTCGTGTAAATA
TCGATTTTAGTGATTGCATTACTTATTTTGTTGATTGAATTTTATAATTA
TTTCTATAATGATATGATTGGTCCTCGTAACGATTTTATATTGATTGGTT
TGTGTAAATATAGTTTT
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protein sequence of SMED30024739-orf-1

>SMED30024739-orf-1 ID=SMED30024739-orf-1|Name=SMED30024739-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=386bp
MAASGFYSNVINEVIDSLKTQFNEEGIDPAVLNDLKEIWEKKIKDSGALE
PIKHPVQSASHFSNMMQPNDITRNNAVRLQTMSNPSSRLIKPSGQGSVMP
DQNYNAPRMTVPVLVQQGNNTFRPANSFMSNFSQNSNHINDMYPSSNPYR
MHPFQNCDYLFGQWLKNDRLRNVDKSKPPINYRNESVPMVINTNAQHGIP
MFSQYHNIINPNQIITDNNNIVNLRKNQVDGNDDGSSDDEENDFVNVSEV
DPQSVRPPMSNIPTPAVFKKETKEEETDEELVEDEIEQLNHHDLSVKHEQ
TDEEDNEDDDDEVEEPQNEEEPLNSEDDISDDDPEKIFETDNVIVCQYEK
VNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000028Category 2 cell
PLANA:0000099neuron
PLANA:0003117parapharyngeal cell
Vocabulary: INTERPRO
TermDefinition
IPR004855TFIIA_asu/bsu
IPR013028TFIIA_asu_N
IPR009088TFIIA_b-brl
IPR009083TFIIA_a-hlx
Vocabulary: cellular component
TermDefinition
GO:0005672transcription factor TFIIA complex
Vocabulary: biological process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
GO:0006413translational initiation
Vocabulary: molecular function
TermDefinition
GO:0003743translation initiation factor activity