Transcription initiation factor IIA subunit 1-like protein 1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30024739 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Human
Match: GTF2A1 (general transcription factor IIA subunit 1 [Source:HGNC Symbol;Acc:HGNC:4646]) HSP 1 Score: 92.4337 bits (228), Expect = 5.827e-20 Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D +F KA+G+AEW Sbjct: 275 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 337
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Human
Match: GTF2A1 (general transcription factor IIA subunit 1 [Source:HGNC Symbol;Acc:HGNC:4646]) HSP 1 Score: 92.4337 bits (228), Expect = 1.045e-19 Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D +F KA+G+AEW Sbjct: 314 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Human
Match: GTF2A1L (general transcription factor IIA subunit 1 like [Source:HGNC Symbol;Acc:HGNC:30727]) HSP 1 Score: 83.5741 bits (205), Expect = 1.852e-16 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+S+ D +F+TDNVIVCQY+K++R++NKWK G+ G+D VF KA+G+AEW Sbjct: 416 LNSGDDVSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVFAKAIGDAEW 478 HSP 2 Score: 50.447 bits (119), Expect = 5.506e-6 Identity = 31/91 (34.07%), Postives = 48/91 (52.75%), Query Frame = 1 Query: 91 FYSNVINEVIDSLKTQFNEEGIDPAVLNDLKEIWEKKIKDSGALEPIKHPVQSASHFSNMMQPNDITRNNAVRL-QTMSNPSSRLIKPSGQ 360 Y +VI +VI+ ++ F EEGI+ VL DLK++WE K+ S A E F N +Q T L QT+ + ++ L+ P+G+ Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDF---------FRNSIQSPLFTLQLPHSLHQTLQSSTASLVIPAGR 91
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Human
Match: GTF2A1L (general transcription factor IIA subunit 1 like [Source:HGNC Symbol;Acc:HGNC:30727]) HSP 1 Score: 82.0333 bits (201), Expect = 4.130e-16 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+S+ D +F+TDNVIVCQY+K++R++NKWK G+ G+D VF KA+G+AEW Sbjct: 382 LNSGDDVSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVFAKAIGDAEW 444
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Human
Match: STON1-GTF2A1L (STON1-GTF2A1L readthrough [Source:HGNC Symbol;Acc:HGNC:30651]) HSP 1 Score: 83.1889 bits (204), Expect = 4.496e-16 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+S+ D +F+TDNVIVCQY+K++R++NKWK G+ G+D VF KA+G+AEW Sbjct: 1120 LNSGDDVSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVFAKAIGDAEW 1182 HSP 2 Score: 50.8322 bits (120), Expect = 6.124e-6 Identity = 31/91 (34.07%), Postives = 48/91 (52.75%), Query Frame = 1 Query: 91 FYSNVINEVIDSLKTQFNEEGIDPAVLNDLKEIWEKKIKDSGALEPIKHPVQSASHFSNMMQPNDITRNNAVRL-QTMSNPSSRLIKPSGQ 360 Y +VI +VI+ ++ F EEGI+ VL DLK++WE K+ S A E F N +Q T L QT+ + ++ L+ P+G+ Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATE---------DFFRNSIQSPLFTLQLPHSLHQTLQSSTASLVIPAGR 795
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Celegans
Match: pqn-51 (Prion-like-(Q/N-rich)-domain-bearing protein [Source:UniProtKB/TrEMBL;Acc:O44625]) HSP 1 Score: 68.5514 bits (166), Expect = 2.430e-12 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 Query: 1084 IFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 +FE DNV++CQ+EKVNR R KWK GI ++ KD F K GEAEW Sbjct: 306 LFEADNVVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 354
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Celegans
Match: pqn-51 (Prion-like-(Q/N-rich)-domain-bearing protein [Source:UniProtKB/TrEMBL;Acc:O44625]) HSP 1 Score: 68.5514 bits (166), Expect = 2.430e-12 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 Query: 1084 IFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 +FE DNV++CQ+EKVNR R KWK GI ++ KD F K GEAEW Sbjct: 306 LFEADNVVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 354
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Celegans
Match: pqn-51 (Prion-like-(Q/N-rich)-domain-bearing protein [Source:UniProtKB/TrEMBL;Acc:O44625]) HSP 1 Score: 68.5514 bits (166), Expect = 2.430e-12 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 Query: 1084 IFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 +FE DNV++CQ+EKVNR R KWK GI ++ KD F K GEAEW Sbjct: 306 LFEADNVVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 354
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Celegans
Match: pqn-51 (Prion-like-(Q/N-rich)-domain-bearing protein [Source:UniProtKB/TrEMBL;Acc:O44625]) HSP 1 Score: 68.5514 bits (166), Expect = 2.430e-12 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 Query: 1084 IFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 +FE DNV++CQ+EKVNR R KWK GI ++ KD F K GEAEW Sbjct: 306 LFEADNVVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 354
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Fly
Match: TfIIA-L (gene:FBgn0011289 transcript:FBtr0085154) HSP 1 Score: 92.8189 bits (229), Expect = 1.834e-20 Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD++D+D ++F+TDNVIVCQY+K+ R+RNKWK GI N+ GKD VF K+ G+AEW Sbjct: 262 LNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNGDAEW 324
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Fly
Match: TfIIA-L (gene:FBgn0011289 transcript:FBtr0085156) HSP 1 Score: 92.4337 bits (228), Expect = 3.750e-20 Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD++D+D ++F+TDNVIVCQY+K+ R+RNKWK GI N+ GKD VF K+ G+AEW Sbjct: 301 LNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNGDAEW 363
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Fly
Match: TfIIA-L (gene:FBgn0011289 transcript:FBtr0085155) HSP 1 Score: 92.4337 bits (228), Expect = 3.842e-20 Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD++D+D ++F+TDNVIVCQY+K+ R+RNKWK GI N+ GKD VF K+ G+AEW Sbjct: 304 LNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNGDAEW 366
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Zebrafish
Match: gtf2a1 (general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694]) HSP 1 Score: 89.7373 bits (221), Expect = 4.145e-19 Identity = 35/63 (55.56%), Postives = 54/63 (85.71%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+SD++ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D VF KA+G+AEW Sbjct: 307 LNSGDDVSDEEDQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVFSKAIGDAEW 369
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Zebrafish
Match: gtf2a1l (general transcription factor IIA, 1-like [Source:ZFIN;Acc:ZDB-GENE-060929-28]) HSP 1 Score: 84.3445 bits (207), Expect = 3.189e-17 Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+S+ D +IF+T+NVIVCQY+K++R++N+WK G+ GKD VF KAVGEAEW Sbjct: 314 LNSGDDVSEQDIPEIFDTENVIVCQYDKIHRSKNRWKFYLKDGVMCYGGKDYVFSKAVGEAEW 376
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Xenopus
Match: scnm1 (sodium channel modifier 1 [Source:Xenbase;Acc:XB-GENE-921392]) HSP 1 Score: 93.5893 bits (231), Expect = 3.935e-20 Identity = 36/63 (57.14%), Postives = 55/63 (87.30%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D VF KA+G+AEW Sbjct: 305 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVFSKAIGDAEW 367
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Xenopus
Match: scnm1 (sodium channel modifier 1 [Source:Xenbase;Acc:XB-GENE-921392]) HSP 1 Score: 93.2041 bits (230), Expect = 4.492e-20 Identity = 36/63 (57.14%), Postives = 55/63 (87.30%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D VF KA+G+AEW Sbjct: 301 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVFSKAIGDAEW 363
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Xenopus
Match: rgs5 (regulator of G-protein signaling 5 [Source:Xenbase;Acc:XB-GENE-971917]) HSP 1 Score: 85.1149 bits (209), Expect = 4.045e-17 Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+S+ + +F+TDNVIVCQY+K++R++NKWK G+ + GKD VF KA+GEAEW Sbjct: 410 LNSGDDVSEQEVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMSFGGKDYVFSKAIGEAEW 472
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Xenopus
Match: rgs5 (regulator of G-protein signaling 5 [Source:Xenbase;Acc:XB-GENE-971917]) HSP 1 Score: 85.1149 bits (209), Expect = 4.270e-17 Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+S+ + +F+TDNVIVCQY+K++R++NKWK G+ + GKD VF KA+GEAEW Sbjct: 408 LNSGDDVSEQEVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMSFGGKDYVFSKAIGEAEW 470
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Xenopus
Match: rgs5 (regulator of G-protein signaling 5 [Source:Xenbase;Acc:XB-GENE-971917]) HSP 1 Score: 84.3445 bits (207), Expect = 7.236e-17 Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+S+ + +F+TDNVIVCQY+K++R++NKWK G+ + GKD VF KA+GEAEW Sbjct: 376 LNSGDDVSEQEVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMSFGGKDYVFSKAIGEAEW 438
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Mouse
Match: Gtf2a1 (general transcription factor II A, 1 [Source:MGI Symbol;Acc:MGI:1933277]) HSP 1 Score: 92.0485 bits (227), Expect = 5.440e-20 Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D +F KA+G+AEW Sbjct: 277 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 339
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Mouse
Match: Gtf2a1 (general transcription factor II A, 1 [Source:MGI Symbol;Acc:MGI:1933277]) HSP 1 Score: 92.0485 bits (227), Expect = 8.982e-20 Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D +F KA+G+AEW Sbjct: 316 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 378
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Mouse
Match: Gtf2a1l (general transcription factor IIA, 1-like [Source:MGI Symbol;Acc:MGI:1919078]) HSP 1 Score: 82.4185 bits (202), Expect = 2.434e-16 Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+S+ D +F+T+NVIVCQY+K++R++N+WK G+ G+D VF KA+GEAEW Sbjct: 406 LNSGDDVSEQDVPDLFDTENVIVCQYDKIHRSKNRWKFYLKDGVMCFGGRDYVFAKAIGEAEW 468
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Mouse
Match: Gtf2a1l (general transcription factor IIA, 1-like [Source:MGI Symbol;Acc:MGI:1919078]) HSP 1 Score: 50.0618 bits (118), Expect = 2.206e-6 Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 1 Query: 91 FYSNVINEVIDSLKTQFNEEGIDPAVLNDLKEIWEKKIKDSGALE 225 Y +VI +VI+ ++ F EEGI+ VL DLK++WE K+ S A E Sbjct: 10 LYQSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKVLQSKATE 54
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. UniProt/SwissProt
Match: sp|P52654|TF2AA_DROME (Transcription initiation factor IIA subunit 1 OS=Drosophila melanogaster OX=7227 GN=TfIIA-L PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 3.851e-19 Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD++D+D ++F+TDNVIVCQY+K+ R+RNKWK GI N+ GKD VF K+ G+AEW Sbjct: 304 LNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNGDAEW 366
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. UniProt/SwissProt
Match: sp|P52655|TF2AA_HUMAN (Transcription initiation factor IIA subunit 1 OS=Homo sapiens OX=9606 GN=GTF2A1 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 5.018e-19 Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D +F KA+G+AEW Sbjct: 314 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. UniProt/SwissProt
Match: sp|Q5RCU0|TF2AA_PONAB (Transcription initiation factor IIA subunit 1 OS=Pongo abelii OX=9601 GN=GTF2A1 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 5.456e-19 Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D +F KA+G+AEW Sbjct: 314 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. UniProt/SwissProt
Match: sp|O08949|TF2AA_RAT (Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus OX=10116 GN=Gtf2a1 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 6.105e-19 Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D +F KA+G+AEW Sbjct: 315 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 377
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. UniProt/SwissProt
Match: sp|Q99PM3|TF2AA_MOUSE (Transcription initiation factor IIA subunit 1 OS=Mus musculus OX=10090 GN=Gtf2a1 PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 6.283e-19 Identity = 35/63 (55.56%), Postives = 55/63 (87.30%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD+SD++ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D +F KA+G+AEW Sbjct: 316 LNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 378
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. TrEMBL
Match: A0A131ZUX2 (Transcription initiation factor IIA subunit 1-like protein 1 OS=Sarcoptes scabiei OX=52283 GN=QR98_0010120 PE=4 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 6.200e-22 Identity = 43/63 (68.25%), Postives = 54/63 (85.71%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD+SD+DP ++FETDNV+VCQY+K+ R+RNKWK +F GI NL GKD VF +AVG+AEW Sbjct: 77 LNSEDDVSDEDPVELFETDNVVVCQYDKITRSRNKWKFHFKDGIMNLQGKDYVFSRAVGDAEW 139
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. TrEMBL
Match: A0A0A9WKQ5 (Transcription initiation factor IIA subunit 1 (Fragment) OS=Lygus hesperus OX=30085 GN=TfIIA-L_1 PE=4 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.211e-20 Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD+S++DP ++FETDNV+VCQY+K+ RTRNKWK F GI NL GKD VF K+ G+AEW Sbjct: 39 LNSEDDVSEEDPLELFETDNVVVCQYDKITRTRNKWKFYFKDGIMNLSGKDYVFQKSNGDAEW 101
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. TrEMBL
Match: A0A1I8JJQ0 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.538e-20 Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+SD+D +++FETDN++VCQY+K+NR RNKWK + GI NL+GKD VF KA G+AEW Sbjct: 43 LNSADDVSDEDSDRLFETDNIVVCQYDKINRARNKWKFHLKDGIMNLNGKDFVFQKATGDAEW 105
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. TrEMBL
Match: A0A1I8I5A6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 6.275e-20 Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+SD+D +++FETDN++VCQY+K+NR RNKWK + GI NL+GKD VF KA G+AEW Sbjct: 58 LNSADDVSDEDSDRLFETDNIVVCQYDKINRARNKWKFHLKDGIMNLNGKDFVFQKATGDAEW 120
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. TrEMBL
Match: A0A087U3U0 (Transcription initiation factor IIA subunit 1 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_15407 PE=4 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 6.337e-20 Identity = 39/63 (61.90%), Postives = 54/63 (85.71%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS+DD+S+DDP +F+T+NV+VCQY+K+NR++NKWK + GI NL GKD VFHKA+G++EW Sbjct: 169 LNSDDDVSEDDPTDLFDTENVVVCQYDKINRSKNKWKFHLKDGIMNLQGKDFVFHKALGDSEW 231
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Cavefish
Match: gtf2a1 (general transcription factor IIA subunit 1 [Source:NCBI gene;Acc:103036178]) HSP 1 Score: 89.7373 bits (221), Expect = 3.019e-19 Identity = 35/63 (55.56%), Postives = 54/63 (85.71%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+SD++ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D VF KA+G+AEW Sbjct: 292 LNSGDDVSDEEDQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVFSKAIGDAEW 354
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Cavefish
Match: gtf2a1 (general transcription factor IIA subunit 1 [Source:NCBI gene;Acc:103036178]) HSP 1 Score: 90.1225 bits (222), Expect = 3.848e-19 Identity = 35/63 (55.56%), Postives = 54/63 (85.71%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+SD++ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D VF KA+G+AEW Sbjct: 323 LNSGDDVSDEEDQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVFSKAIGDAEW 385
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Sea Lamprey
Match: gtf2a1 (general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694]) HSP 1 Score: 94.3597 bits (233), Expect = 2.498e-21 Identity = 37/63 (58.73%), Postives = 53/63 (84.13%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNSEDD+SD++ ++FETDNV+VCQY+K++R++NKWK + GI NL+G+D VF +A G+AEW Sbjct: 306 LNSEDDVSDEEGTELFETDNVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVFSRATGDAEW 368 HSP 2 Score: 50.0618 bits (118), Expect = 6.470e-7 Identity = 31/101 (30.69%), Postives = 53/101 (52.48%), Query Frame = 1 Query: 82 ASGFYSNVINEVIDSLKTQFNEEGIDPAVLNDLKEIWEKKIKDSGALEPIKHPVQSASHFSNMMQPNDITRNNAVRLQTMSNPSSRLIKP-SGQGSVMPDQ 381 A Y+ VI +V+ +LK F +EG+D VL +LK++WE K+ S ALE ++ Q + QP+ + +P+ +++P + V+PDQ Sbjct: 10 APKLYTAVIEDVVQNLKDIFLDEGVDEHVLQELKQLWESKLMQSKALESLQQ--QENLMIARAQQPHPQNKK--------PSPTVAVVRPQTTAAGVLPDQ 100
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Sea Lamprey
Match: gtf2a1l (general transcription factor IIA, 1-like [Source:ZFIN;Acc:ZDB-GENE-060929-28]) HSP 1 Score: 81.6481 bits (200), Expect = 3.934e-17 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+S+ D ++F+ DNV+VCQY+K++R++NKWK +F GI NL G D F K G+AEW Sbjct: 311 LNSGDDVSEQDNSEMFDVDNVVVCQYDKIHRSKNKWKFHFKDGIMNLDGLDYFFSKLAGDAEW 373
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Sea Lamprey
Match: gtf2a1l (general transcription factor IIA, 1-like [Source:ZFIN;Acc:ZDB-GENE-060929-28]) HSP 1 Score: 81.2629 bits (199), Expect = 5.091e-17 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+S+ D ++F+ DNV+VCQY+K++R++NKWK +F GI NL G D F K G+AEW Sbjct: 309 LNSGDDVSEQDNSEMFDVDNVVVCQYDKIHRSKNKWKFHFKDGIMNLDGLDYFFSKLAGDAEW 371
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Sea Lamprey
Match: gtf2a1l (general transcription factor IIA, 1-like [Source:ZFIN;Acc:ZDB-GENE-060929-28]) HSP 1 Score: 81.2629 bits (199), Expect = 5.510e-17 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+S+ D ++F+ DNV+VCQY+K++R++NKWK +F GI NL G D F K G+AEW Sbjct: 312 LNSGDDVSEQDNSEMFDVDNVVVCQYDKIHRSKNKWKFHFKDGIMNLDGLDYFFSKLAGDAEW 374
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Yeast
Match: TOA1 (TFIIA large subunit; involved in transcriptional activation, acts as antirepressor or as coactivator; required, along with Toa2p, for ribosomal protein gene transcription in vivo; homologous to largest and second largest subunits of human and Drosophila TFIIA [Source:SGD;Acc:S000005720]) HSP 1 Score: 49.6766 bits (117), Expect = 4.636e-7 Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 1 Query: 1042 LNSEDDISDDD-----PEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 + SE D SDDD E+ +N+++C Y+KV RT+ +WK + G+ ++ D F KA EAEW Sbjct: 218 VGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 285
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Medaka
Match: gtf2a1 (general transcription factor IIA subunit 1 [Source:NCBI gene;Acc:101171124]) HSP 1 Score: 89.3521 bits (220), Expect = 6.235e-19 Identity = 35/63 (55.56%), Postives = 54/63 (85.71%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+SDD+ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D VF K++G+AEW Sbjct: 320 LNSGDDVSDDENQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVFSKSIGDAEW 382
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Medaka
Match: gtf2a1 (general transcription factor IIA subunit 1 [Source:NCBI gene;Acc:101171124]) HSP 1 Score: 88.9669 bits (219), Expect = 9.534e-19 Identity = 35/63 (55.56%), Postives = 54/63 (85.71%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+SDD+ +++F+T+NV+VCQY+K++R++NKWK + GI NL+G+D VF K++G+AEW Sbjct: 320 LNSGDDVSDDENQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVFSKSIGDAEW 382
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Medaka
Match: gtf2a1l (stonin-1 [Source:NCBI gene;Acc:101160018]) HSP 1 Score: 82.0333 bits (201), Expect = 2.522e-16 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+ + D +F+TDNVIVCQY+K++R++N+WK + G+ G+D VF KAVGEAEW Sbjct: 374 LNSGDDVVEQDIPDLFDTDNVIVCQYDKIHRSKNRWKFHLKDGVICYGGRDYVFSKAVGEAEW 436
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Medaka
Match: gtf2a1l (stonin-1 [Source:NCBI gene;Acc:101160018]) HSP 1 Score: 80.4925 bits (197), Expect = 6.776e-16 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 Query: 1042 LNSEDDISDDDPEKIFETDNVIVCQYEKVNRTRNKWKLNFVSGIANLHGKDSVFHKAVGEAEW 1230 LNS DD+ + D +F+TDNVIVCQY+K++R++N+WK + G+ G+D VF KAVGEAEW Sbjct: 352 LNSGDDVVEQDIPDLFDTDNVIVCQYDKIHRSKNRWKFHLKDGVICYGGRDYVFSKAVGEAEW 414 The following BLAST results are available for this feature:
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 4
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 3
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 4
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 4
BLAST of Transcription initiation factor IIA subunit 1-like protein 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 0
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30024739 ID=SMED30024739|Name=Transcription initiation factor IIA subunit 1-like protein 1|organism=Schmidtea mediterranea sexual|type=transcript|length=1517bpback to top protein sequence of SMED30024739-orf-1 >SMED30024739-orf-1 ID=SMED30024739-orf-1|Name=SMED30024739-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=386bp MAASGFYSNVINEVIDSLKTQFNEEGIDPAVLNDLKEIWEKKIKDSGALEback to top Annotated Terms
The following terms have been associated with this transcript:
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