Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2
Overview
Neoblast Clusters
Zeng et. al., 2018
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppEmbryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30024599 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: BX284696.1 (pep chromosome:GRCz11:7:42935126:42939263:1 gene:ENSDARG00000099710.2 transcript:ENSDART00000157747.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX284696.1) HSP 1 Score: 86.6557 bits (213), Expect = 8.211e-20 Identity = 49/176 (27.84%), Postives = 94/176 (53.41%), Query Frame = 2 Query: 5 LLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHN-SVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 +L L+N+ I +K + +K +IPKP+KD L+ +WRPI LL+V YK+ A + + RL + + NL+ + G ++ + +N ++ ++++ + N+ I +LD AF ++ H ++ L++ G F N++ + Y D SS + +++GV+QGC Sbjct: 495 ILLILYNECIAEKEMSTTMKQGIISLIPKPEKDS--LLIDNWRPITLLTVDYKILALVFSNRLKTKL---NLMITESQSGFLNGRHISNNIRLVLDLIDYADFI-NSKAIIFFLDFYKAFDTIEHKFLLHSLKKFGFGSTFINVIEMFYKDISSSIIINMFTSQRFTLERGVRQGC 664
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: BX511246.1 (pep chromosome:GRCz11:23:9353552:9357627:1 gene:ENSDARG00000100234.2 transcript:ENSDART00000163298.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511246.1) HSP 1 Score: 86.6557 bits (213), Expect = 8.534e-20 Identity = 49/176 (27.84%), Postives = 94/176 (53.41%), Query Frame = 2 Query: 5 LLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHN-SVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 +L L+N+ I +K + +K +IPKP+KD L+ +WRPI LL+V YK+ A + + RL + + NL+ + G ++ + +N ++ ++++ + N+ I +LD AF ++ H ++ L++ G F N++ + Y D SS + +++GV+QGC Sbjct: 495 ILLMLYNECIAEKEMSTTMKQGIISLIPKPEKDS--LLIDNWRPITLLTVDYKILALVFSNRLKTKL---NLIITESQSGFLNGRHISNNIRLVLDLIDYADFI-NSKAIIFFLDFYKAFDTIEHKFLLHSLKKFGFGSTFINVIEMFYKDISSSIIINMFTSQRFTLERGVRQGC 664
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: si:dkeyp-88h4.2 (si:dkeyp-88h4.2 [Source:ZFIN;Acc:ZDB-GENE-131121-105]) HSP 1 Score: 82.4185 bits (202), Expect = 2.422e-18 Identity = 54/167 (32.34%), Postives = 88/167 (52.69%), Query Frame = 2 Query: 38 DKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHV---GQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 ++T+ +K +IPKPDKD T++ +WRPI LL+ YK+ ASI A+RL KR+ LH + G I + N+ L L K ++ I +LD AF +V H+++ L+ G +F N++++LY D +S +P + +G++QGC Sbjct: 41 NETMTPTMKQGVISLIPKPDKDP--TIIDNWRPITLLNFDYKLLASIFAKRL----KRH--LHYIINETQTGFIKGRHISCNTRLVLDLIDYKNEIDSDAIILFLDFYKAFDTVKHEFLLDSLKAFGFPLKFLNVVQMLYKDINSCVILNSCTSPRFPVLRGIRQGC 199
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: CU024870.2 (pep chromosome:GRCz11:25:23489979:23495448:1 gene:ENSDARG00000103841.2 transcript:ENSDART00000158200.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CU024870.2) HSP 1 Score: 82.0333 bits (201), Expect = 3.240e-18 Identity = 54/167 (32.34%), Postives = 88/167 (52.69%), Query Frame = 2 Query: 38 DKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHV---GQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 ++T+ +K +IPKPDKD T++ +WRPI LL+ YK+ ASI A+RL KR+ LH + G I + N+ L L K ++ I +LD AF +V H+++ L+ G +F N++++LY D +S +P + +G++QGC Sbjct: 506 NETMTPTMKQGVISLIPKPDKDP--TIIDNWRPITLLNFDYKLLASIFAKRL----KRH--LHYIINETQTGFIKGRHISCNTRLVLDLIDYKNEIDSDAIILFLDFYKAFDTVKHEFLLDSLKAFGFPLKFLNVVQMLYKDINSCVILNSCTSPRFPVLRGIRQGC 664
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: BX544877.2 (pep chromosome:GRCz11:25:25310063:25315481:1 gene:ENSDARG00000103976.2 transcript:ENSDART00000164291.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX544877.2) HSP 1 Score: 82.0333 bits (201), Expect = 3.468e-18 Identity = 54/167 (32.34%), Postives = 88/167 (52.69%), Query Frame = 2 Query: 38 DKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHV---GQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 ++T+ +K +IPKPDKD T++ +WRPI LL+ YK+ ASI A+RL KR+ LH + G I + N+ L L K ++ I +LD AF +V H+++ L+ G +F N++++LY D +S +P + +G++QGC Sbjct: 506 NETMTPTMKQGVISLIPKPDKDP--TIIDNWRPITLLNFDYKLLASIFAKRL----KRH--LHYIINETQTGFIKGRHISCNTRLVLDLIDYKNEIDSDAIILFLDFYKAFDTVKHEFLLDSLKAFGFPLKFLNVVQMLYKDINSCVILNSCTSPRFPVLRGIRQGC 664
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000002428.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:15907829:15913358:1 gene:ENSXETG00000006437.1 transcript:ENSXETT00000002428.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 86.6557 bits (213), Expect = 1.264e-19 Identity = 59/175 (33.71%), Postives = 90/175 (51.43%), Query Frame = 2 Query: 5 LLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 LLT ++ + I +P+ + I++PKP KD + L S+RPI+LL+ K++A ILARRL IK L++ Q G + L L + S AIA LDI AF +V Y+W +L+++G F NM++LLY + + T N + +G +QGC Sbjct: 487 LLTKMYGEAISTGILPESMYEAAIILLPKPGKDPQ--LCESFRPISLLTTDVKIYAKILARRLARVIK--TLVNPDQIGFIPTKTTALNTRRLYLNLSLTP-SNTGNRAIAALDIAKAFDTVEWSYLWCVLKQLGFGPTFINMVQLLYKSPRATLRINSLCTSNFTLSRGTRQGC 656
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000032317.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:1:130520927:130524992:-1 gene:ENSXETG00000008594.1 transcript:ENSXETT00000032317.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 85.1149 bits (209), Expect = 4.867e-19 Identity = 55/175 (31.43%), Postives = 88/175 (50.29%), Query Frame = 2 Query: 5 LLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 +L LF + + P+ L +++PK KD L S+RPI+LL+ K+FA +LARRL+ I + ++H Q G + L L H+ + AIA LDI AF +V Y+W++L G +++ M++LLY + + TP A+ +G +QGC Sbjct: 487 MLLKLFKEAVQLGQFPESLYEAAIVLLPKQGKDPH--LCESFRPISLLTADVKIFAKVLARRLSRVITK--IIHPDQIGFIPAKTAALNTRRLYLNLAHASAGQGAK-AIAALDITKAFDTVEWPYLWQVLTHFGFGKKYIQMVQLLYKYPVASIRINSLTTPAFALSRGTRQGC 656
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000040456.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:8:87387561:87390644:-1 gene:ENSXETG00000021299.1 transcript:ENSXETT00000040456.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 84.7297 bits (208), Expect = 6.171e-19 Identity = 55/175 (31.43%), Postives = 88/175 (50.29%), Query Frame = 2 Query: 5 LLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 +L LF + + P+ L +++PK KD L S+RPI+LL+ K+FA +LARRL+ I + ++H Q G + L L H+ + AIA LDI AF +V Y+W++L G +++ M++LLY + + TP A+ +G +QGC Sbjct: 117 MLLKLFKEAVQLGQFPESLYEAAIVLLPKQGKDPH--LCESFRPISLLTADVKIFAKVLARRLSRVITK--IIHPDQIGFIPAKTAALNTRRLYLNLAHASAGQGAK-AIAALDITKAFDTVEWPYLWQVLTHFGFGKKYIQMVQLLYKYPVASIRINSLTTPAFALSRGTRQGC 286
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: rpl22l1 (ribosomal protein L22 like 1 [Source:Xenbase;Acc:XB-GENE-6073103]) HSP 1 Score: 80.4925 bits (197), Expect = 4.872e-18 Identity = 55/174 (31.61%), Postives = 89/174 (51.15%), Query Frame = 2 Query: 8 LTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 L LFN + +PD ++ I++PKP KD + +S+RPI+L++ K+ A ILARRL I + L+ + Q G + L + L + + + + IA LD + AF SV Y+W L+ +G E FT ++ LY D + I+ A+++G +QGC Sbjct: 15 LVSLFNDVREGAPLPDSMRRAMIIVLPKPGKDPRE--CASYRPISLMNCDAKILAKILARRLNQVITQ--LIEIDQSGFIPTRTTDINIRRLYTNLSVTHDNAGSRV-IATLDNEKAFDSVEWAYLWATLQSMGFKENFTKWIQALYRDPEATIRTNQNISLPFALQRGTRQGC 183
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000046003.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV460539.1:49812:51785:-1 gene:ENSXETG00000019210.1 transcript:ENSXETT00000046003.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 79.7221 bits (195), Expect = 3.396e-17 Identity = 50/166 (30.12%), Postives = 90/166 (54.22%), Query Frame = 2 Query: 41 KTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKG---GSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 +++P ++IPK +D TL SS+RPI+L++ K+ A +LA RLT ++ +L+H Q G G D + L + L+ + ++ + A+A LD + AF S+ +Y+W++LRR G+ F L++LY + ++P ++ +G +QGC Sbjct: 335 QSLPPSFAEALIVVIPKAGRDP--TLCSSYRPISLINTDAKILAKVLATRLTRAVQ--DLIHPDQSGFMPGRATDFNLRR---LFTNLQIT-HTNSGARAVASLDSEKAFDSIEWEYLWEVLRRFGLGARFIQWLKMLYKHPIARVRVNNTVSPTFSLHRGTRQGC 492
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03274|PO22_POPJA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.994e-15 Identity = 49/161 (30.43%), Postives = 87/161 (54.04%), Query Frame = 2 Query: 47 VPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGP-IITPNIAIKQGVKQG 526 VP + +T +IPK D S+WRPI + S + ++ ILA+RL + ++ LH QKG + DG + ++ +L + + + + T + LD++ AF +V H + + L+R+G+ E +N + +D+++ GP T I I++GVKQG Sbjct: 52 VPTPWTAMRTTLIPK---DGDLENPSNWRPITIASALQRLLHRILAKRLEAAVE----LHPAQKGYARIDGTLVNSLLLDTYISSRREQRKT-YNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGSLSDSTTTIRVGPGSQTRKICIRRGVKQG 204
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|P11369|LORF2_MOUSE (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 1.877e-13 Identity = 51/177 (28.81%), Postives = 87/177 (49.15%), Query Frame = 2 Query: 5 LLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSS--CLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 +L LF+KI ++ T+P+ +IPKP KD T + ++RPI+L+++ K+ ILA R+ IK ++H Q G G ++ S + + K+ I LD + AF + H +M K+L R G+ + NM++ +Y+ + I +K G +QGC Sbjct: 498 ILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDP--TKIENFRPISLMNIDAKILNKILANRIQEHIKA--IIHPDQVG--FIPGMQGWFNIRKSINVIHYINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGC 668
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|P08548|LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.821e-12 Identity = 46/178 (25.84%), Postives = 86/178 (48.31%), Query Frame = 2 Query: 5 LLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKG---GSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 +L LF I + +P+ +IPKP KD T ++RPI+L+++ K+ IL R+ IK+ ++H Q G GS G ++ ++H KN I +D + AF ++ H +M + L++IG+ F ++ +Y+ ++ + + ++ G +QGC Sbjct: 490 ILLNLFQNIEKEGILPNTFYEANITLIPKPGKDP--TRKENYRPISLMNIDAKILNKILTNRIQQHIKK--IIHHDQVGFIPGS--QGWFNIRKSIN-VIQHINKLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGC 660
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03278|PO21_NASVI (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 7.466e-12 Identity = 53/171 (30.99%), Postives = 84/171 (49.12%), Query Frame = 2 Query: 17 LFNKIIIDKTVPDCLKSFKTIMIPK-PDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSS----FYTCGPIITPNIAIKQG 514 LFN I+ P +T++IPK P D + +RP+++ SV + F ILA R I + LL Q+ + DG E+ S+LS+ ++ ++ K + IA LD+K AF SV H + LRR + E N + +Y ++ + T G I P ++QG Sbjct: 355 LFNMIMYHGQCPRRYLDSRTVLIPKEPGTMDP----ACFRPLSIASVALRHFHRILANR----IGEHGLLDTRQRAFIVADGVAENTSLLSAMIKEARM-KIKGLYIAILDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKTKGRWIRPARGVRQG 516
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|O00370|LORF2_HUMAN (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 4.149e-10 Identity = 45/177 (25.42%), Postives = 82/177 (46.33%), Query Frame = 2 Query: 5 LLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKG--GSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 L LF I + +P+ I+IPKP +D T ++RPI+L+++ K+ ILA R+ IK+ L+H Q G + S+ + ++H +K+ I +D + AF + +M K L ++G+ + ++R +Y ++ +K G +QGC Sbjct: 491 FLLKLFQSIEKEGILPNSFYEASIILIPKPGRDT--TKKENFRPISLMNIDAKILNKILANRIQQHIKK--LIHHDQVGFIPGMQGWFNIRKSI--NVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGC 661
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A159X4Q6 (ORF2-like protein (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.852e-38 Identity = 72/112 (64.29%), Postives = 82/112 (73.21%), Query Frame = 2 Query: 2 KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIA 337 KLL LFN II +P+ SFKTI+IPKP K Y SSWRPIALLS YK+F SIL+RRLT WI N LLH GQKGGS +GCVEHN+VL++ LEHSKYSK P+AIA Sbjct: 208 KLLARLFNIIIDSGQIPNDWLSFKTILIPKPGKSGDYDDTSSWRPIALLSTSYKIFTSILSRRLTKWIIENKLLHPGQKGGSRFEGCVEHNAVLTAVLEHSKYSKKAPLAIA 319
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2C3J9 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Araneus ventricosus OX=182803 GN=PO21_34 PE=4 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.124e-35 Identity = 74/176 (42.05%), Postives = 107/176 (60.80%), Query Frame = 2 Query: 2 KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 + L LFN + + VP K TI++PK K D +L +WRPIAL S YK+F LA RL+SW ++ ++L QKG + HDG +EHN VL LE ++ + + IAWLD+ +AFG++PH +++ L G E+FT+++R +Y+D S+ G T I IK GVKQGC Sbjct: 45 QFLQALFNVCVHPRRVPPVWKKSTTILLPK--KGD-LSLPCNWRPIALSSTAYKLFTKCLAARLSSWCEQYSILSPCQKGFTPHDGILEHNFVLQQSLEQARLQRKE-LCIAWLDVTNAFGALPHSAIFEALTAAGTGEQFTDIIRDIYSDASTQILSGLSTTKPIGIKSGVKQGC 216
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2SYT3 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 OS=Araneus ventricosus OX=182803 GN=PO22_2 PE=4 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.455e-34 Identity = 72/171 (42.11%), Postives = 104/171 (60.82%), Query Frame = 2 Query: 17 LFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 LFN + + VP K TI++PK K D +L +WRPIAL S YK+F +A RL++W ++ N+L QKG + HDG +EHN VL LE ++ + I IAWLD+ +AFG++PH +++ L G E+F +++R +Y+D S+ G T I IK GVKQGC Sbjct: 4 LFNACVHLRRVPPAWKKSTTILLPK--KGD-LSLPCNWRPIALSSTAYKLFTKCIAARLSTWCEQYNILSPCQKGFTPHDGILEHNFVLQQSLEQARLQRKE-ICIAWLDVTNAFGALPHSDIFEALTAAGTGEQFVDVIRDIYSDASTQILSGQSTTKPIEIKSGVKQGC 170
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y1ZUE0 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 OS=Araneus ventricosus OX=182803 GN=PO21_53 PE=4 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 5.423e-34 Identity = 74/176 (42.05%), Postives = 106/176 (60.23%), Query Frame = 2 Query: 2 KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 + L LFN + + VP K TI++PK K D +L +WRPIAL S YK+F LA RL++W + ++L QKG + HDG +EHN VL LE ++ + I IAWLD+ +AFG++PH +++ L G E+FT+++R +Y+D S+ G T I IK GVKQGC Sbjct: 1000 QFLQALFNACVHLRRVPPVWKKSTTILLPK--KGD-LSLPCNWRPIALSSTAYKLFTKCLAARLSTWCDQYSILSPCQKGFTPHDGILEHNFVLQQSLEQARLQRKE-ICIAWLDVTNAFGALPHSAIFEALTAAGTGEQFTDLIRDIYSDASTQILAGQSTTNPIGIKSGVKQGC 1171
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2NZ92 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 OS=Araneus ventricosus OX=182803 GN=PO21_52 PE=4 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 6.732e-34 Identity = 73/176 (41.48%), Postives = 107/176 (60.80%), Query Frame = 2 Query: 2 KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 + L LFN + + VP K TI++PK K D +L +WRPIAL S YK+F LA RL++W + ++L QKG + HDG +EHN VL LE ++ + + IAWLD+ +AFG++PH +++ L G E+FT+++R +Y+D+S+ G T I IK GVKQGC Sbjct: 1100 QFLQALFNACVHLRRVPPVWKKSTTILLPK--KGD-LSLPCNWRPIALSSTAYKLFTKCLAARLSAWCDQYSILSPCQKGFTPHDGILEHNFVLQQSLEQARLQRKE-LCIAWLDVTNAFGALPHSAIFEALTAAGTGEQFTDIIRDIYSDSSTQILAGQSTTNPIGIKSGVKQGC 1271
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000034831.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:16211297:16215948:1 gene:ENSAMXG00000034228.1 transcript:ENSAMXT00000034831.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 99.3673 bits (246), Expect = 3.252e-24 Identity = 59/178 (33.15%), Postives = 101/178 (56.74%), Query Frame = 2 Query: 2 KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVG-QKGG-SIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 KL+ ++ K II P ++IPK +KD + +RPI+LL+V K+F S++ARRL +++KRNNL+ QK G + GC+EHNS++ ++ ++ K + + +LD+ +AFGSVPH +WK V EE + +++ + D ++ G +T ++ G+ GC Sbjct: 412 KLMAIVWKKGII----PKEWHRAGGVLIPK-EKDS--VAIDQFRPISLLNVEGKIFFSVVARRLATYLKRNNLIDTSVQKAGIAGFSGCIEHNSMIWHQIQTARAEKKD-LHVVFLDLANAFGSVPHALLWKAFNFFRVPEEISRLVKAYFEDIQFCFSVGECVTSWQRLEIGIMAGC 581
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000034560.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000712.1:195631:202616:-1 gene:ENSAMXG00000042811.1 transcript:ENSAMXT00000034560.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 79.337 bits (194), Expect = 2.745e-17 Identity = 48/173 (27.75%), Postives = 86/173 (49.71%), Query Frame = 2 Query: 8 LTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQG 526 L L+ ++ VP K +T +IPK + V +WRPI + S+I ++F+ I+A RL R ++ Q+G GC E+ VL + H K + + +A+ ++D AF S+ H+++ L + + + +++ Y D + +P+I +K GVKQG Sbjct: 464 LERLYTAWMVAGVVPKAFKECRTTLIPKSTSKEALEEVGNWRPITIGSLILRLFSKIMAERLA----RACPINPRQRGFISAPGCAENLKVLQGLIGHCK-KERSQLAVVFVDFARAFDSISHEHILSALGQRQLDQHVIKLIQSAYVDCVTRIIMDGAKSPDILMKVGVKQG 631
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000055550.1 (pep primary_assembly:Astyanax_mexicanus-2.0:1:16555187:16560144:-1 gene:ENSAMXG00000035203.1 transcript:ENSAMXT00000055550.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 78.5666 bits (192), Expect = 5.006e-17 Identity = 48/165 (29.09%), Postives = 87/165 (52.73%), Query Frame = 2 Query: 41 KTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSI--HDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 +T+P + ++IPK +KD + + +R I LL+V KVF SI+A+RLT ++K NN++ + I GC+EH S++ ++ ++ + + + +LD+ +AFGS+PH +W + TNM+R + D T +++ G+ GC Sbjct: 364 QTIPKAWRRAGGVLIPK-EKDA--SNIGQFRQINLLNVEGKVFFSIVAKRLTKYLKENNMIDTSVQKAGIPGFSGCLEHISMIWHQIQSAR-KEGRDLHVLFLDLANAFGSIPHSLIWAAFDFFHIPNTITNMVRNYFQDLQFCIQTTEYTTSWQSLEVGIMAGC 524
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000033573.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:31407009:31410218:-1 gene:ENSAMXG00000030324.1 transcript:ENSAMXT00000033573.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 77.411 bits (189), Expect = 1.302e-16 Identity = 47/153 (30.72%), Postives = 80/153 (52.29%), Query Frame = 2 Query: 77 IMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHD--GCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 + IPK + + +R I+LLSV K+F SILARRLT ++ N+ + + G I GC+EH V++ + ++ +K +A+ WLD+ +A+GS+PH + L R V + ++ Y S + G I + ++ G+ GC Sbjct: 318 VWIPKEEVSKN---IDQFRIISLLSVEGKIFFSILARRLTDFLSSNHYIDTSVQKGGIPGVPGCLEHTGVVTQLIREARENKGD-LAVLWLDLANAYGSIPHKLVQTTLERHHVPGQVAELIMNYYDQFSMRVSTGSITSEWHRVEVGIITGC 466
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000048276.1 (pep primary_assembly:Astyanax_mexicanus-2.0:17:7857318:7859867:1 gene:ENSAMXG00000040121.1 transcript:ENSAMXT00000048276.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 77.0258 bits (188), Expect = 1.767e-16 Identity = 50/150 (33.33%), Postives = 82/150 (54.67%), Query Frame = 2 Query: 80 MIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 ++ KP KD T SS+RP++LL+ KVFA +LA+RL S I +L+H Q G ++ L LE + S+ A+ LD + AF + ++W +L+R G F +M+ LYT+ S+ + G +I+ +++G +QGC Sbjct: 517 LLLKPGKDS--TECSSYRPLSLLNTDVKVFAKVLAKRLDSVIP--DLIHSDQTGFIRSRLASDNLRRLFHILEFAP-SQMLGSAVLSLDAEKAFDRLEWPFLWAVLKRFGFGSAFIHMIFTLYTNPSACVSTGHMISAKFLLERGTRQGC 661
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000040357.1 (pep primary_assembly:ASM223467v1:14:28942701:28945517:1 gene:ENSORLG00000024817.1 transcript:ENSORLT00000040357.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 82.0333 bits (201), Expect = 2.773e-18 Identity = 54/180 (30.00%), Postives = 91/180 (50.56%), Query Frame = 2 Query: 2 KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQ----KGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 ++L FN+ I ++ + +K ++PKP KD L+ +WRPI LL YK+ A I A RL S I + ++ Q KG IH H ++ L++++ + I +LD AF S+ H +++ L+ G +F N++++ Y D SS + N + +GV+QGC Sbjct: 501 EMLFEAFNECIDEQMLSPTMKRGIISLLPKPGKD--VLLIDNWRPITLLCCDYKILAHIYANRLKSGISQ--IIDESQSAFIKGRHIH----HHTRLILDILDYNQIIPQDSL-ILYLDFFKAFDSLEHAFLFNALKTFGFESKFCNIIKMFYKDISSNIAINRGFSNNFPVNRGVRQGC 671
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000036683.1 (pep primary_assembly:ASM223467v1:19:23029986:23032853:-1 gene:ENSORLG00000028041.1 transcript:ENSORLT00000036683.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 81.6481 bits (200), Expect = 4.497e-18 Identity = 47/171 (27.49%), Postives = 90/171 (52.63%), Query Frame = 2 Query: 17 LFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 ++ + I+ + + +K +IPKP+KD ++ +WRPI LL+V YK+ A + A+RL S + ++ Q G + + ++ L++S++ + + I +LD AF +V H +++ L+ G E F ++ ++ Y D SS P + +I + V+QGC Sbjct: 212 MYKECIVQQEMTATMKQGLITLIPKPNKDP--VMIENWRPITLLNVDYKILALVYAQRLKSNLHE--IISETQSGFMKNRHISNNIRLILDLLDYSEHIDSEAL-ILFLDFYKAFDTVEHPFLYNALKLFGFGENFISIAKMFYKDISSSILLYPNTSQRFSINRSVRQGC 377
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000028058.1 (pep primary_assembly:ASM223467v1:18:21516917:21520645:1 gene:ENSORLG00000027382.1 transcript:ENSORLT00000028058.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 81.2629 bits (199), Expect = 5.152e-18 Identity = 47/171 (27.49%), Postives = 90/171 (52.63%), Query Frame = 2 Query: 17 LFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 ++ + I+ + + +K +IPKP+KD ++ +WRPI LL+V YK+ A + A+RL S + ++ Q G + + ++ L++S++ + + I +LD AF +V H +++ L+ G E F ++ ++ Y D SS P + +I + V+QGC Sbjct: 499 MYKECIVQQEMTATMKQGLITLIPKPNKDP--VMIENWRPITLLNVDYKILALVYAQRLKSNLHE--IISETQSGFMKNRHISNNIRLILDLLDYSEHIDSEAL-ILFLDFYKAFDTVEHPFLYNALKLFGFGENFISIAKMFYKDISSSILLYPNTSQRFSINRSVRQGC 664
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000043337.1 (pep primary_assembly:ASM223467v1:9:26106542:26110291:1 gene:ENSORLG00000021884.1 transcript:ENSORLT00000043337.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 79.7221 bits (195), Expect = 2.019e-17 Identity = 53/180 (29.44%), Postives = 91/180 (50.56%), Query Frame = 2 Query: 2 KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQ----KGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 ++L FN+ I ++ + +K ++PKP KD L+ +WRPI LL YK+ A I A RL S I + ++ Q KG IH H ++ L++++ + I +LD AF S+ H +++ L+ G +F N++++ Y D SS + + + +GV+QGC Sbjct: 500 EMLFEAFNECIDEQMLSPTMKRGVISLLPKPGKD--VLLIDNWRPITLLCCDYKILAHIYANRLKSGISQ--IIDESQSAFIKGRHIH----HHTRLILDILDYNQIIPQDSL-ILFLDFFKAFDSLEHAFLFNALKTFGFESKFCNIIKMFYKDISSNIALNRGFSNSFPVNRGVRQGC 670
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000044124.1 (pep primary_assembly:ASM223467v1:4:5412351:5416070:1 gene:ENSORLG00000022718.1 transcript:ENSORLT00000044124.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 78.5666 bits (192), Expect = 4.746e-17 Identity = 52/180 (28.89%), Postives = 91/180 (50.56%), Query Frame = 2 Query: 2 KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQ----KGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 ++L FN+ I ++ + +K ++PKP KD L+ +WRPI LL YK+ A I A RL S I + ++ Q KG IH H ++ +++++ + I +LD AF S+ H +++ L+ G +F N++++ Y D SS + + + +GV+QGC Sbjct: 490 EMLFEAFNECIDEQMLSPTMKRGIISLLPKPGKD--VLLIDNWRPITLLCCDYKILAHIYANRLKSGISQ--IIDESQSAFIKGRHIH----HHTRLILDIIDYNQIIPQESL-ILFLDFFKAFDSLEHAFLFNALKTFGFESKFCNIIKMFYKDISSNIALNRGFSNSFPVNRGVRQGC 660
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000079542.1 (SMESG000079542.1) HSP 1 Score: 315.849 bits (808), Expect = 4.750e-102 Identity = 143/176 (81.25%), Postives = 162/176 (92.05%), Query Frame = 2 Query: 2 KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 KLLT L+NKII + T+PD KSFKT+M PKPDK DKY L+SSWRPIALLSV+YK+FASIL+RRLTSW+ RNNLLH+GQKGGS+HDGCVEHNSVLSSCLEHSKYSK+TPI IA+LDIKDAFGSVPHDYMWK+LR IGV E+FTN L+LLYT+TSS+YTCGPI+TPNI IKQGVKQGC Sbjct: 376 KLLTLLYNKIITENTMPDVWKSFKTLMTPKPDKGDKYNLISSWRPIALLSVVYKIFASILSRRLTSWVNRNNLLHIGQKGGSVHDGCVEHNSVLSSCLEHSKYSKDTPIIIAFLDIKDAFGSVPHDYMWKILRHIGVGEKFTNTLKLLYTETSSYYTCGPIVTPNIPIKQGVKQGC 551
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1) HSP 1 Score: 300.827 bits (769), Expect = 1.074e-94 Identity = 139/176 (78.98%), Postives = 157/176 (89.20%), Query Frame = 2 Query: 2 KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 KLLTFLFNKII++K +PD KSFKT++ PKP+KD KY VSSWRPIALLSVIYKVFAS LA RLT WI NNLLH+GQKGGS HDGCVEHNS+LS+ LEHSKYSKN P+AIAWLDIKDAFGSVPHDYMW LLR IGV E+FT++L+LLY+DTS+FY+CGPI+TPNI IKQGVKQGC Sbjct: 3091 KLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGC 3266 HSP 2 Score: 300.827 bits (769), Expect = 1.074e-94 Identity = 139/176 (78.98%), Postives = 157/176 (89.20%), Query Frame = 2 Query: 2 KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 KLLTFLFNKII++K +PD KSFKT++ PKP+KD KY VSSWRPIALLSVIYKVFAS LA RLT WI NNLLH+GQKGGS HDGCVEHNS+LS+ LEHSKYSKN P+AIAWLDIKDAFGSVPHDYMW LLR IGV E+FT++L+LLY+DTS+FY+CGPI+TPNI IKQGVKQGC Sbjct: 5447 KLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGC 5622 HSP 3 Score: 68.1662 bits (165), Expect = 1.368e-13 Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 2 Query: 392 LLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 LL+ + VS EF N+L+LLYTDTSSFY C + TP+I IK+GVKQGC Sbjct: 902 LLKHMNVSAEFVNILQLLYTDTSSFYQCNQMQTPDIPIKKGVKQGC 947
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1) HSP 1 Score: 300.827 bits (769), Expect = 1.194e-94 Identity = 139/176 (78.98%), Postives = 157/176 (89.20%), Query Frame = 2 Query: 2 KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 KLLTFLFNKII++K +PD KSFKT++ PKP+KD KY VSSWRPIALLSVIYKVFAS LA RLT WI NNLLH+GQKGGS HDGCVEHNS+LS+ LEHSKYSKN P+AIAWLDIKDAFGSVPHDYMW LLR IGV E+FT++L+LLY+DTS+FY+CGPI+TPNI IKQGVKQGC Sbjct: 3062 KLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGC 3237 HSP 2 Score: 300.827 bits (769), Expect = 1.194e-94 Identity = 139/176 (78.98%), Postives = 157/176 (89.20%), Query Frame = 2 Query: 2 KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 KLLTFLFNKII++K +PD KSFKT++ PKP+KD KY VSSWRPIALLSVIYKVFAS LA RLT WI NNLLH+GQKGGS HDGCVEHNS+LS+ LEHSKYSKN P+AIAWLDIKDAFGSVPHDYMW LLR IGV E+FT++L+LLY+DTS+FY+CGPI+TPNI IKQGVKQGC Sbjct: 5389 KLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGC 5564 HSP 3 Score: 68.1662 bits (165), Expect = 1.355e-13 Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 2 Query: 392 LLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 LL+ + VS EF N+L+LLYTDTSSFY C + TP+I IK+GVKQGC Sbjct: 902 LLKHMNVSAEFVNILQLLYTDTSSFYQCNQMQTPDIPIKKGVKQGC 947
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000078596.1 (SMESG000078596.1) HSP 1 Score: 249.98 bits (637), Expect = 4.005e-77 Identity = 117/171 (68.42%), Postives = 138/171 (80.70%), Query Frame = 2 Query: 17 LFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVSEEFTNMLRLLYTDTSSFYTCGPIITPNIAIKQGVKQGC 529 + N + +D +PD KSFKT++I KP K DKY VSSWRPIALLSVIYK+F S LA RLT I +NNLLH+GQKG S HDGCVEHNS+LSS LEHSKY KN+ +AIAWLDIKDAFGSVPH YMW LLR +GV EEF ++ + +D S+FY+CGPI+TPNIAI+QGVKQGC Sbjct: 722 IINDVDVD-VIPDSWKSFKTLLIQKPSKGDKYDSVSSWRPIALLSVIYKLFTSCLANRLTFCINKNNLLHIGQKGDSRHDGCVEHNSILSSALEHSKYGKNSQLAIAWLDIKDAFGSVPHAYMWSLLRFVGVDEEFVTIIERMDSDKSTFYSCGPILTPNIAIRQGVKQGC 891
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000071441.1 (SMESG000071441.1) HSP 1 Score: 243.047 bits (619), Expect = 2.555e-76 Identity = 111/138 (80.43%), Postives = 125/138 (90.58%), Query Frame = 2 Query: 2 KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSVIYKVFASILARRLTSWIKRNNLLHVGQKGGSIHDGCVEHNSVLSSCLEHSKYSKNTPIAIAWLDIKDAFGSVPHDYMWKLLRRIGVS 415 KLLT L+NKII + T+PD K FKT+MIPKPDK DKY L+SSWRPI LLSV+YK+FASILARRLTSW+ RNNLLH+GQKGGS+HDGCVEHNSVL SCLEHSKYSK+TPI IA+LDIKDAFGSVPHDYMWK+LR IGV+ Sbjct: 136 KLLTLLYNKIITENTMPDVWKYFKTLMIPKPDKGDKYNLISSWRPITLLSVVYKIFASILARRLTSWVNRNNLLHIGQKGGSVHDGCVEHNSVLLSCLEHSKYSKDTPIIIAFLDIKDAFGSVPHDYMWKILRHIGVA 273 The following BLAST results are available for this feature:
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30024599 ID=SMED30024599|Name=Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2|organism=Schmidtea mediterranea sexual|type=transcript|length=531bpback to top protein sequence of SMED30024599-orf-1 >SMED30024599-orf-1 ID=SMED30024599-orf-1|Name=SMED30024599-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=176bp KLLTFLFNKIIIDKTVPDCLKSFKTIMIPKPDKDDKYTLVSSWRPIALLSback to top Annotated Terms
The following terms have been associated with this transcript:
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