SJCHGC07397 protein

Overview
NameSJCHGC07397 protein
Smed IDSMED30024579
Length (bp)1498
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SJCHGC07397 protein (SMED30024579) t-SNE clustered cells

Violin plots show distribution of expression levels for SJCHGC07397 protein (SMED30024579) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SJCHGC07397 protein (SMED30024579) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SJCHGC07397 protein (SMED30024579) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30024579

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30024579SMESG000050581.1 dd_Smed_v4_10396_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30024579SMESG000050581.1 dd_Smed_v4_10396_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30024579SMESG000050581.1 dd_Smed_v4_10396_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30024579SMESG000050581.1 dd_Smed_v6_10396_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
epidermisSMED30024579SMESG000050581.1 dd_Smed_v4_10396_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SJCHGC07397 protein vs. TrEMBL
Match: A0A1I8I3J0 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig017071g2 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.644e-10
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:   94 FEDAFYQLDQDRDGVITIQDLERYSTEKNLKDKFIQKWLNLF-ADEKNVIYYDNFCSTLGIVPAKEKFENKIYKIDMTNE 330
            F  AF  +D D  G I++++LE Y  + N KD F++KWLNLF  DE   I YD +C+TLG++P +E  E   +K+  T +
Sbjct:    7 FHQAFQAIDTDHSGEISVEELEDYCKKMNYKDTFVKKWLNLFDEDESGTITYDEYCNTLGLIPKQEVVEK--HKVQQTKQ 84
[Close]
BLAST of SJCHGC07397 protein vs. TrEMBL
Match: A0A1I8HCC1 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig017071g1 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.888e-10
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:   94 FEDAFYQLDQDRDGVITIQDLERYSTEKNLKDKFIQKWLNLF-ADEKNVIYYDNFCSTLGIVPAKEKFENKIYKIDMTNE 330
            F  AF  +D D  G I++++LE Y  + N KD F++KWLNLF  DE   I YD +C+TLG++P +E  E   +K+  T +
Sbjct:    7 FHQAFQAIDTDHSGEISVEELEDYCKKMNYKDTFVKKWLNLFDEDESGTITYDEYCNTLGLIPKQEVVEK--HKVQQTKQ 84
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BLAST of SJCHGC07397 protein vs. TrEMBL
Match: A0A504X7T8 (Putative tegumental protein OS=Fasciola gigantica OX=46835 GN=FGIG_08761 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.749e-9
Identity = 47/176 (26.70%), Postives = 82/176 (46.59%), Query Frame = 1 
Query:   79 IMNDAFEDAFYQLDQDRDGVITIQDLERYSTEKNLKDKFIQKWLNLF-ADEKNVIYYDNFCSTLGI-------VPAKEKFENKIYKIDMTNETHKSITDIISKLLDENDEISENTLEKIKNQVEYDNGSQWNIKL-----NPSQEDLKVQYAEDG-----LLYYSPRSNDDKRILI 552
            +  + F  AF  +D+D DGVI IQDLE Y+    +   F+QKW  LF  +    I ++NFCSTLG+          + + E K+Y+ +M+ E+ +    +I +  + ND   ++++     +++   G +W  +      NP      + Y+ D      +LY  P    +K    
Sbjct:    1 MSQNTFLSAFENIDRDHDGVIHIQDLEEYAKNDGVSPDFVQKWKLLFDPNNTGQITFENFCSTLGVSKKVRDSAERRRRPEPKVYESNMSMESVEHCLQVIKRNYNYND--PDSSIHVTLTEMDGSLGPRWQARAVKLSENPKPAGEYLTYSLDNGEHKYVLYREPEKRRNKCCCC 174
[Close]
BLAST of SJCHGC07397 protein vs. TrEMBL
Match: A0A4E0R6U0 (Putative tegumental protein OS=Fasciola hepatica OX=6192 GN=D915_005062 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.000e-9
Identity = 47/176 (26.70%), Postives = 81/176 (46.02%), Query Frame = 1 
Query:   79 IMNDAFEDAFYQLDQDRDGVITIQDLERYSTEKNLKDKFIQKWLNLF-ADEKNVIYYDNFCSTLGI-------VPAKEKFENKIYKIDMTNETHKSITDIISKLLDENDEISENTLEKIKNQVEYDNGSQWNIKL-----NPSQEDLKVQYAEDG-----LLYYSPRSNDDKRILI 552
            +  D F  AF  +D+D DGVI I+DLE Y+    +   F+QKW  LF  +    I ++NFCSTLG+          + + E K+Y+ +M+ E+      +I +  + ND   ++++     +++   G +W  +      NP      + Y+ D      +LY  P    +K    
Sbjct:    1 MSQDTFLSAFENIDRDHDGVIHIRDLEEYAKNDGVSPDFVQKWKLLFDPNNTGQITFENFCSTLGVSKKVRDSAERRRRPEPKVYESNMSLESVDHCLQVIKRNYNHND--PDSSIHVTLTEMDGSLGPRWQARAVKLSENPKPAGEYLTYSLDNGEHKYVLYREPEKRRNKCCCC 174
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BLAST of SJCHGC07397 protein vs. TrEMBL
Match: A0A448XI69 (Uncharacterized protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS30542 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.851e-9
Identity = 26/64 (40.62%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   94 FEDAFYQLDQDRDGVITIQDLERYSTEKNLKDKFIQKWLNLFADEKNV-IYYDNFCSTLGIVPA 282
            F+ AF+++D D  G IT+++L  Y  + + ++ F+ KW+ LF  EK   I Y+++CSTLG++PA
Sbjct:    4 FQRAFFEIDTDASGSITVEELRAYMEKMHYRETFVTKWVQLFDPEKTGEITYESYCSTLGLIPA 67
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BLAST of SJCHGC07397 protein vs. Planmine SMEST
Match: SMESG000050581.1 (SMESG000050581.1)

HSP 1 Score: 882.478 bits (2279), Expect = 0.000e+0
Identity = 457/459 (99.56%), Postives = 459/459 (100.00%), Query Frame = 1 
Query:   82 MNDAFEDAFYQLDQDRDGVITIQDLERYSTEKNLKDKFIQKWLNLFADEKNVIYYDNFCSTLGIVPAKEKFENKIYKIDMTNETHKSITDIISKLLDENDEISENTLEKIKNQVEYDNGSQWNIKLNPSQEDLKVQYAEDGLLYYSPRSNDDKRILIWKVENELEDPYEIYQXXXXXXXXXXXXXXXSEFKVKDKNLSKNTLDQITNKIANKTDGKWDIKINPNYESLSVKYSEDGILYYNPDNEDDLKILVWKISEELEDKDKFKIHVIDMTDKTKNSIMEILNKFVDDENDLSKDSLENIKKEIANQVGGDWDIKLDPSQRDLSTKYAEDGLVCLSRNNSNDLRILVWKMPKDPSITNAVIYDCDMTENIKTEILKLVHEKTNENVVDNESIISELDKRFGETWNMQLNPTAKQLKVDYDLDGKIYFSPNSTEQPKIFIWRQDKDKKRGSLCCCGCF 1458
            MNDAFEDAFYQLDQDRDGVITIQDLERYSTEKNLKDKFIQKWLNLFADEKNVIYYDNFCSTLGIVPAKEKFENKIYKIDMTNETHKSITDIISKLLDENDEISENTLEKIKNQVEYDNGSQWNIKLNPSQEDLKVQYAEDGLLYYSPRSNDDKRILIWKVENELEDPYEIYQIDMTDKTKTTVIDIISEFKVKDKNLSKNTLDQITNKI+NKTDGKWDIKINPNYESLSVKYSEDGILYYNPDNEDDLKILVWKISEELEDKDKFKIHVIDMTDKTKNSIMEILNKFVDDENDLSKDSLENIKKEIANQVGGDWDIKLDPSQRDLSTKYAEDGLVCLSRNNSNDLRILVWK+PKDPSITNAVIYDCDMTENIKTEILKLVHEKTNENVVDNESIISELDKRFGETWNMQLNPTAKQLKVDYDLDGKIYFSPNSTEQPKIFIWRQDKDKKRGSLCCCGCF
Sbjct:    1 MNDAFEDAFYQLDQDRDGVITIQDLERYSTEKNLKDKFIQKWLNLFADEKNVIYYDNFCSTLGIVPAKEKFENKIYKIDMTNETHKSITDIISKLLDENDEISENTLEKIKNQVEYDNGSQWNIKLNPSQEDLKVQYAEDGLLYYSPRSNDDKRILIWKVENELEDPYEIYQIDMTDKTKTTVIDIISEFKVKDKNLSKNTLDQITNKISNKTDGKWDIKINPNYESLSVKYSEDGILYYNPDNEDDLKILVWKISEELEDKDKFKIHVIDMTDKTKNSIMEILNKFVDDENDLSKDSLENIKKEIANQVGGDWDIKLDPSQRDLSTKYAEDGLVCLSRNNSNDLRILVWKVPKDPSITNAVIYDCDMTENIKTEILKLVHEKTNENVVDNESIISELDKRFGETWNMQLNPTAKQLKVDYDLDGKIYFSPNSTEQPKIFIWRQDKDKKRGSLCCCGCF 459
[Close]
BLAST of SJCHGC07397 protein vs. Planmine SMEST
Match: SMESG000017253.1 (SMESG000017253.1)

HSP 1 Score: 109.383 bits (272), Expect = 1.465e-27
Identity = 60/169 (35.50%), Postives = 95/169 (56.21%), Query Frame = 1 
Query:   88 DAFEDAFYQLDQDRDGVITIQDLERYSTEKNLKDKFIQKWLNLF-ADEKNVIYYDNFCSTLGIVPAKEKFENK--------IYK-IDMTNETHKSITDIISKLLDENDEISENTLEKIKNQVEYDNGSQWNIKLNPSQEDLKVQYAEDGLLYYSPRSNDDKRILIWKVE 564
            D F  AF+Q+D D DG+I   DL  Y  E NLK  F +KWL+LF  D   +I+Y+ FC  LGI  +K ++ N         ++K  DM+N T  +I   I +       + E+ ++ I  ++  D+G  WN+ +NP+++++K  Y  DG LYYSP      ++L+W++E
Sbjct:    4 DGFVSAFHQVDVDDDGIINEDDLNHYCEENNLKRNFTEKWLSLFDHDNDKIIHYEEFCRALGI-ESKRRYSNASAGNDDIVVFKETDMSNATKDAIIRKIYRKGKHEYNLKEDNIKDIIEELNMDHGPNWNVIVNPTEKEVKCCYDFDGKLYYSPNVKGKNKLLVWRIE 171

HSP 2 Score: 74.7146 bits (182), Expect = 2.083e-15
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 1 
Query: 1162 AVIYDCDMTENIKTEILKLVHEKTN-------ENVVDNESIISELDKRFGETWNMQLNPTAKQLKVDYDLDGKIYFSPNSTEQPKIFIWRQDKDKKRGSLCCC 1449
             V  + DM+   K  I++ ++ K         +N+ D   II EL+   G  WN+ +NPT K++K  YD DGK+Y+SPN   + K+ +WR ++ KK+G  CCC
Sbjct:   83 VVFKETDMSNATKDAIIRKIYRKGKHEYNLKEDNIKD---IIEELNMDHGPNWNVIVNPTEKEVKCCYDFDGKLYYSPNVKGKNKLLVWRIEEKKKKGLACCC 182
[Close]
BLAST of SJCHGC07397 protein vs. Planmine SMEST
Match: SMESG000017253.1 (SMESG000017253.1)

HSP 1 Score: 108.997 bits (271), Expect = 1.489e-27
Identity = 60/169 (35.50%), Postives = 95/169 (56.21%), Query Frame = 1 
Query:   88 DAFEDAFYQLDQDRDGVITIQDLERYSTEKNLKDKFIQKWLNLF-ADEKNVIYYDNFCSTLGIVPAKEKFENK--------IYK-IDMTNETHKSITDIISKLLDENDEISENTLEKIKNQVEYDNGSQWNIKLNPSQEDLKVQYAEDGLLYYSPRSNDDKRILIWKVE 564
            D F  AF+Q+D D DG+I   DL  Y  E NLK  F +KWL+LF  D   +I+Y+ FC  LGI  +K ++ N         ++K  DM+N T  +I   I +       + E+ ++ I  ++  D+G  WN+ +NP+++++K  Y  DG LYYSP      ++L+W++E
Sbjct:    2 DGFVSAFHQVDVDDDGIINEDDLNHYCEENNLKRNFTEKWLSLFDHDNDKIIHYEEFCRALGI-ESKRRYSNASAGNDDIVVFKETDMSNATKDAIIRKIYRKGKHEYNLKEDNIKDIIEELNMDHGPNWNVIVNPTEKEVKCCYDFDGKLYYSPNVKGKNKLLVWRIE 169

HSP 2 Score: 74.7146 bits (182), Expect = 1.920e-15
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 1 
Query: 1162 AVIYDCDMTENIKTEILKLVHEKTN-------ENVVDNESIISELDKRFGETWNMQLNPTAKQLKVDYDLDGKIYFSPNSTEQPKIFIWRQDKDKKRGSLCCC 1449
             V  + DM+   K  I++ ++ K         +N+ D   II EL+   G  WN+ +NPT K++K  YD DGK+Y+SPN   + K+ +WR ++ KK+G  CCC
Sbjct:   81 VVFKETDMSNATKDAIIRKIYRKGKHEYNLKEDNIKD---IIEELNMDHGPNWNVIVNPTEKEVKCCYDFDGKLYYSPNVKGKNKLLVWRIEEKKKKGLACCC 180
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BLAST of SJCHGC07397 protein vs. Planmine SMEST
Match: SMESG000026622.1 (SMESG000026622.1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.096e-10
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   88 DAFEDAFYQLDQDRDGVITIQDLERYSTEKNLKDKFIQKWLNLF-ADEKNVIYYDNFCSTLGIVPAKEKFENKIYKID 318
            D F  AF+ +D D+   ITI +LE+Y    NLKD F++KW+N+F +++  VI  D +CS LG+V  + +   + + I+
Sbjct:    2 DNFLTAFFNIDSDQSEEITIAELEKYMRLNNLKDAFVKKWINIFDSNDDGVITLDEYCSVLGLVTNEARIMREQFNIE 79
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BLAST of SJCHGC07397 protein vs. Planmine SMEST
Match: SMESG000019835.1 (SMESG000019835.1)

HSP 1 Score: 62.003 bits (149), Expect = 2.034e-10
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   94 FEDAFYQLDQDRDGVITIQDLERYSTEKNLKDKFIQKWLNLF-ADEKNVIYYDNFCSTLGIVP 279
            F  AF  +D+D  G IT+ +L+ Y  + N KD F+ KWL LF +++   I Y ++C TLG+VP
Sbjct:    4 FHKAFEAIDEDGSGEITVDELQHYMIKNNYKDSFVSKWLTLFDSNQSGKITYKHYCDTLGLVP 66
The following BLAST results are available for this feature:
BLAST of SJCHGC07397 protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC07397 protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC07397 protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC07397 protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC07397 protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC07397 protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC07397 protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC07397 protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1I8I3J06.644e-1042.50Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8HCC16.888e-1042.50Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A504X7T81.749e-926.70Putative tegumental protein OS=Fasciola gigantica ... [more]
A0A4E0R6U02.000e-926.70Putative tegumental protein OS=Fasciola hepatica O... [more]
A0A448XI693.851e-940.63Uncharacterized protein OS=Protopolystoma xenopodi... [more]
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BLAST of SJCHGC07397 protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC07397 protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC07397 protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC07397 protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC07397 protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC07397 protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000050581.10.000e+099.56SMESG000050581.1[more]
SMESG000017253.11.465e-2735.50SMESG000017253.1[more]
SMESG000017253.11.489e-2735.50SMESG000017253.1[more]
SMESG000026622.11.096e-1038.46SMESG000026622.1[more]
SMESG000019835.12.034e-1042.86SMESG000019835.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30024579 ID=SMED30024579|Name=SJCHGC07397 protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1498bp
TTTCAACTGCCAGAAATTTTAAGACACATTTTTCGAGCTGTTTATTTAAT
TTTTTTTTGTTTTTTAAAATAATCTATAATAATGAATGATGCTTTTGAAG
ATGCTTTTTATCAATTGGACCAAGACCGTGATGGAGTAATTACAATTCAG
GATTTGGAAAGATATTCTACAGAAAAGAATTTAAAAGACAAATTTATTCA
GAAATGGCTGAATTTATTTGCAGACGAAAAAAATGTCATTTATTATGATA
ACTTCTGCAGTACTCTTGGAATTGTCCCAGCTAAAGAAAAATTTGAGAAC
AAAATATATAAAATTGACATGACAAATGAAACTCACAAGTCAATTACAGA
TATTATTTCAAAATTGCTTGATGAAAATGATGAAATTAGCGAAAATACAT
TAGAAAAAATCAAAAATCAAGTGGAGTATGATAATGGCAGTCAATGGAAC
ATCAAATTGAATCCTTCTCAAGAAGATCTGAAGGTTCAATATGCTGAAGA
CGGGTTACTATATTACAGTCCACGGTCAAATGATGACAAAAGAATTTTAA
TTTGGAAGGTGGAAAATGAACTAGAAGATCCGTATGAGATATATCAAATA
GATATGACAGATAAAACTAAAACGACCGTGATTGATATTATATCGGAATT
CAAAGTAAAAGATAAAAATCTCTCGAAAAACACTCTAGATCAAATAACAA
ATAAAATAGCAAACAAAACCGATGGCAAATGGGATATTAAAATAAATCCG
AATTATGAAAGCCTCAGTGTAAAATATAGCGAAGACGGTATTTTGTATTA
TAATCCAGATAATGAAGATGATTTAAAGATTTTGGTTTGGAAAATCTCAG
AGGAACTCGAAGACAAAGATAAATTTAAAATCCATGTAATTGACATGACT
GATAAAACAAAAAATTCGATCATGGAAATTCTAAATAAATTTGTGGACGA
TGAGAATGATTTATCAAAAGATTCGTTAGAAAATATTAAAAAAGAAATAG
CTAATCAAGTCGGAGGAGACTGGGACATAAAATTAGATCCAAGTCAAAGA
GACCTTTCTACAAAATATGCAGAAGATGGATTAGTTTGTTTAAGTCGTAA
CAATTCAAACGATTTGAGGATTTTGGTATGGAAAATGCCGAAAGATCCAA
GCATCACCAATGCCGTTATATACGACTGTGACATGACCGAAAACATTAAA
ACAGAAATCTTAAAGTTAGTGCATGAGAAAACGAACGAAAACGTTGTGGA
CAATGAGTCTATTATTTCGGAACTTGATAAAAGGTTTGGAGAAACTTGGA
ACATGCAACTTAATCCAACTGCAAAACAATTAAAAGTTGATTATGATTTG
GACGGAAAAATTTACTTTTCACCAAATTCGACAGAGCAACCAAAAATATT
CATCTGGAGACAAGATAAAGATAAAAAAAGAGGATCTTTGTGTTGTTGTG
GTTGTTTTTGACATGAAACTGAAAAGATATTTGTGTGATAGATATATC
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protein sequence of SMED30024579-orf-1

>SMED30024579-orf-1 ID=SMED30024579-orf-1|Name=SMED30024579-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=460bp
MNDAFEDAFYQLDQDRDGVITIQDLERYSTEKNLKDKFIQKWLNLFADEK
NVIYYDNFCSTLGIVPAKEKFENKIYKIDMTNETHKSITDIISKLLDEND
EISENTLEKIKNQVEYDNGSQWNIKLNPSQEDLKVQYAEDGLLYYSPRSN
DDKRILIWKVENELEDPYEIYQIDMTDKTKTTVIDIISEFKVKDKNLSKN
TLDQITNKIANKTDGKWDIKINPNYESLSVKYSEDGILYYNPDNEDDLKI
LVWKISEELEDKDKFKIHVIDMTDKTKNSIMEILNKFVDDENDLSKDSLE
NIKKEIANQVGGDWDIKLDPSQRDLSTKYAEDGLVCLSRNNSNDLRILVW
KMPKDPSITNAVIYDCDMTENIKTEILKLVHEKTNENVVDNESIISELDK
RFGETWNMQLNPTAKQLKVDYDLDGKIYFSPNSTEQPKIFIWRQDKDKKR
GSLCCCGCF*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000020protonephridia
PLANA:0000034epidermis
PLANA:0000418head
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR001372Dynein_light_chain_typ-1/2
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
Vocabulary: cellular component
TermDefinition
GO:0030286dynein complex
Vocabulary: biological process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: molecular function
TermDefinition
GO:0005509calcium ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 1..139
e-value: 7.8E-6
score: 27.5
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 13..25
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 1..35
score: 8.99
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 4..67