Si:ch211-106h4.9

Overview


Name	Si:ch211-106h4.9
Smed ID	SMED30024475
Length (bp)	814

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Si:ch211-106h4.9 (SMED30024475) t-SNE clustered cells

Violin plots show distribution of expression levels for Si:ch211-106h4.9 (SMED30024475) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Si:ch211-106h4.9 (SMED30024475) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Si:ch211-106h4.9 (SMED30024475) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30024475

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
pharynx	SMED30024475	SMESG000026729.1	dd_Smed_v4_3756_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30024475	SMESG000026729.1	dd_Smed_v4_3756_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30024475	SMESG000026729.1	dd_Smed_v4_3756_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of Si:ch211-106h4.9 vs. Ensembl Human
Match: MYRIP (myosin VIIA and Rab interacting protein [Source:HGNC Symbol;Acc:HGNC:19156])

HSP 1 Score: 54.299 bits (129), Expect = 8.763e-8
Identity = 36/123 (29.27%), Postives = 60/123 (48.78%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI--KGELKTYQNKQSKSTAKECLNCSSDLKDF----DGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L ++E   +LQV+ R+  L   E  RLS +  ++  +G   +  +K  +     C+ C S           C  C+ +VC  CC     +K  +C VC +  LL A+  +WFY+N+
Sbjct:    3 RKLDLSGLTDDETEHVLQVVQRDFNLRKKEEERLSELKQKLDEEGSKCSILSKHQQFVEHCCMRCCSPFTFLVNTKRQCGDCKFNVCKSCCSYQKHEKAWVCCVCQQARLLRAQSLEWFYNNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Human
Match: MYRIP (myosin VIIA and Rab interacting protein [Source:HGNC Symbol;Acc:HGNC:19156])

HSP 1 Score: 54.6842 bits (130), Expect = 8.927e-8
Identity = 36/123 (29.27%), Postives = 60/123 (48.78%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI--KGELKTYQNKQSKSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L ++E   +LQV+ R+  L   E  RLS +  ++  +G   +  +K  +     C+ C S           C  C+ +VC  CC     +K  +C VC +  LL A+  +WFY+N+
Sbjct:    3 RKLDLSGLTDDETEHVLQVVQRDFNLRKKEEERLSELKQKLDEEGSKCSILSKHQQFVEHCCMRCCSPFTFLVNTKRQCGDCKFNVCKSCCSYQKHEKAWVCCVCQQARLLRAQSLEWFYNNV 125

[Close]

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI--KGELKTYQNKQSKSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L ++E   +LQV+ R+  L   E  RLS +  ++  +G   +  +K  +     C+ C S           C  C+ +VC  CC     +K  +C VC +  LL A+  +WFY+N+
Sbjct:    3 RKLDLSGLTDDETEHVLQVVQRDFNLRKKEEERLSELKQKLDEEGSKCSILSKHQQFVEHCCMRCCSPFTFLVNTKRQCGDCKFNVCKSCCSYQKHEKAWVCCVCQQARLLRAQSLEWFYNNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Human
Match: MYRIP (myosin VIIA and Rab interacting protein [Source:HGNC Symbol;Acc:HGNC:19156])

HSP 1 Score: 54.299 bits (129), Expect = 9.337e-8
Identity = 36/123 (29.27%), Postives = 60/123 (48.78%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI--KGELKTYQNKQSKSTAKECLNCSSDLKDF----DGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L ++E   +LQV+ R+  L   E  RLS +  ++  +G   +  +K  +     C+ C S           C  C+ +VC  CC     +K  +C VC +  LL A+  +WFY+N+
Sbjct:    3 RKLDLSGLTDDETEHVLQVVQRDFNLRKKEEERLSELKQKLDEEGSKCSILSKHQQFVEHCCMRCCSPFTFLVNTKRQCGDCKFNVCKSCCSYQKHEKAWVCCVCQQARLLRAQSLEWFYNNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Human
Match: SYTL4 (synaptotagmin like 4 [Source:HGNC Symbol;Acc:HGNC:15588])

HSP 1 Score: 50.447 bits (119), Expect = 1.220e-6
Identity = 37/122 (30.33%), Postives = 57/122 (46.72%), Query Frame = 1

Query:   91 LNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI-----KGELKTYQNKQSKSTAKECLNCSSDLKDF----DGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYD 429
            L++S L+EEEK  +L VL R+ ++   +  R+ R+  E+     KG  +  Q+   ++    C  C   L       + C  C   VC + CR   S     CKVC +E+ L+     WFYD
Sbjct:    5 LDLSFLSEEEKDLILSVLQRDEEVRKADEKRIRRLKNELLEIKRKGAKRGSQHYSDRT----CARCQESLGRLSPKTNTCRGCNHLVC-RDCRIQESNGTWRCKVCAKEIELKKATGDWFYD 121

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Zebrafish
Match: si:ch211-106h4.9 (si:ch211-106h4.9 [Source:ZFIN;Acc:ZDB-GENE-070705-17])

HSP 1 Score: 55.0694 bits (131), Expect = 3.696e-8
Identity = 34/123 (27.64%), Postives = 57/123 (46.34%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI--KGELKTYQNKQSKSTAKECLNCSSD----LKDFDGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L + E   ++QV+ R+ +L   E  RL  M   +  +G      ++Q +   + C+ C S     L     C  C  ++C  CC      K  LC  C +  LL+ +  +WFY+N+
Sbjct:    3 RKLDLSGLTDVEAEHVMQVVQRDMQLRKTEETRLFEMKKALVEEGSRSVLLSRQHRFNERCCIRCCSPFTFLLNTKRSCLDCSYNICKSCCTYSKKDKAWLCSSCQKTRLLKTQSLEWFYNNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Zebrafish
Match: myrip (Danio rerio myosin VIIA and Rab interacting protein (myrip), mRNA. [Source:RefSeq mRNA;Acc:NM_001353925])

HSP 1 Score: 53.9138 bits (128), Expect = 5.141e-8
Identity = 36/123 (29.27%), Postives = 58/123 (47.15%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIK--GELKTYQNKQSKSTAKECLNCSSD----LKDFDGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L+  E   +L+V+ R+ +L   E  RLS M  E++  G      +KQ K     C+ C S     L     C  C  ++C  CC    S++  +C  C +   L  +  +WFY+N+
Sbjct:    3 RKLDLSGLSNNEAEHVLRVVQRDMQLRKKEEERLSEMKQELEEEGSRCLLLSKQQKFNEHCCIRCCSPFTFLLNPKRQCLDCHYNICKSCCSYSQSERGYICAACQKSRHLRTQSLEWFYNNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Zebrafish
Match: si:ch211-106h4.9 (si:ch211-106h4.9 [Source:ZFIN;Acc:ZDB-GENE-070705-17])

HSP 1 Score: 53.9138 bits (128), Expect = 5.912e-8
Identity = 35/128 (27.34%), Postives = 59/128 (46.09%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI--KGELKTYQNKQSKSTAKECLNCSSD----LKDFDGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNIPQSTK 450
            R L++S L + E   ++QV+ R+ +L   E  RL  M   +  +G      ++Q +   + C+ C S     L     C  C  ++C  CC      K  LC  C +  LL+ +  +WFY+N+ +  K
Sbjct:    3 RKLDLSGLTDVEAEHVMQVVQRDMQLRKTEETRLFEMKKALVEEGSRSVLLSRQHRFNERCCIRCCSPFTFLLNTKRSCLDCSYNICKSCCTYSKKDKAWLCSSCQKTRLLKTQSLEWFYNNVRRRFK 130

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Zebrafish
Match: si:ch211-106h4.9 (si:ch211-106h4.9 [Source:ZFIN;Acc:ZDB-GENE-070705-17])

HSP 1 Score: 53.9138 bits (128), Expect = 8.276e-8
Identity = 34/123 (27.64%), Postives = 57/123 (46.34%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI--KGELKTYQNKQSKSTAKECLNCSSD----LKDFDGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L + E   ++QV+ R+ +L   E  RL  M   +  +G      ++Q +   + C+ C S     L     C  C  ++C  CC      K  LC  C +  LL+ +  +WFY+N+
Sbjct:    3 RKLDLSGLTDVEAEHVMQVVQRDMQLRKTEETRLFEMKKALVEEGSRSVLLSRQHRFNERCCIRCCSPFTFLLNTKRSCLDCSYNICKSCCTYSKKDKAWLCSSCQKTRLLKTQSLEWFYNNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Zebrafish
Match: sytl4 (synaptotagmin-like 4 [Source:ZFIN;Acc:ZDB-GENE-070209-217])

HSP 1 Score: 53.1434 bits (126), Expect = 1.201e-7
Identity = 35/121 (28.93%), Postives = 59/121 (48.76%), Query Frame = 1

Query:   88 DLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTE-IKGELKTYQNKQSKSTAKECLNCSSDLKDFDG----CEKCQKSVCVKC--CRSFGSQKVMLCKVCYREMLLEAKKAKWFYD 429
            ++N+S L + E+  +L+VL R+  L + E++R+ ++  E +    K  +    K + + C  C   L    G    C  C+  VC KC   R  GS    +C VC +E+ L+     WF+D
Sbjct:    6 EINVSFLTDSEQEFILEVLRRDEDLRHLEDLRVKKLKAEFLDIRRKGAKRGSGKYSERSCGRCQEPLSLLSGSGSQCRSCKHQVCKKCQSVRPNGS---WVCTVCAKEIDLKMSTGDWFFD 123

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Xenopus
Match: rph3al (rabphilin 3A like (without C2 domains) [Source:NCBI gene;Acc:496416])

HSP 1 Score: 54.299 bits (129), Expect = 5.364e-8
Identity = 38/120 (31.67%), Postives = 58/120 (48.33%), Query Frame = 1

Query:  106 LNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQSKSTAKECLNCSSDLKDFDG-----CEKCQKSVCVKC-CRSFGSQK--VMLCKVCYREMLLEAKKAKWFYDNIPQ 441
            LN+ E   +LQV+ R  K+   E  R+ R+   ++   K        +   +CL C  +L  F G     C+ C+K VC KC   + GSQK  V LCK+C  +  +  +   WFY  +P+
Sbjct:   47 LNQNEIDVILQVIRRAEKVDTLEQQRIGRLVERLENMRKNVMG----NGMSQCLLCG-ELLGFLGTTSVFCQDCKKKVCTKCGIETVGSQKRQVWLCKICSEQREVWKRSGAWFYKGLPK 161

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Xenopus
Match: rph3al (rabphilin 3A like (without C2 domains) [Source:NCBI gene;Acc:496416])

HSP 1 Score: 54.299 bits (129), Expect = 5.885e-8
Identity = 38/120 (31.67%), Postives = 58/120 (48.33%), Query Frame = 1

Query:  106 LNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQSKSTAKECLNCSSDLKDFDG-----CEKCQKSVCVKC-CRSFGSQK--VMLCKVCYREMLLEAKKAKWFYDNIPQ 441
            LN+ E   +LQV+ R  K+   E  R+ R+   ++   K        +   +CL C  +L  F G     C+ C+K VC KC   + GSQK  V LCK+C  +  +  +   WFY  +P+
Sbjct:   47 LNQNEIDVILQVIRRAEKVDTLEQQRIGRLVERLENMRKNVMG----NGMSQCLLCG-ELLGFLGTTSVFCQDCKKKVCTKCGIETVGSQKRQVWLCKICSEQREVWKRSGAWFYKGLPK 161

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Xenopus
Match: rph3al (rabphilin 3A like (without C2 domains) [Source:NCBI gene;Acc:496416])

HSP 1 Score: 54.299 bits (129), Expect = 6.154e-8
Identity = 38/120 (31.67%), Postives = 58/120 (48.33%), Query Frame = 1

Query:  106 LNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQSKSTAKECLNCSSDLKDFDG-----CEKCQKSVCVKC-CRSFGSQK--VMLCKVCYREMLLEAKKAKWFYDNIPQ 441
            LN+ E   +LQV+ R  K+   E  R+ R+   ++   K        +   +CL C  +L  F G     C+ C+K VC KC   + GSQK  V LCK+C  +  +  +   WFY  +P+
Sbjct:   95 LNQNEIDVILQVIRRAEKVDTLEQQRIGRLVERLENMRKNVMG----NGMSQCLLCG-ELLGFLGTTSVFCQDCKKKVCTKCGIETVGSQKRQVWLCKICSEQREVWKRSGAWFYKGLPK 209

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Xenopus
Match: rph3al (rabphilin 3A like (without C2 domains) [Source:NCBI gene;Acc:496416])

HSP 1 Score: 54.299 bits (129), Expect = 6.217e-8
Identity = 38/120 (31.67%), Postives = 58/120 (48.33%), Query Frame = 1

Query:  106 LNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQSKSTAKECLNCSSDLKDFDG-----CEKCQKSVCVKC-CRSFGSQK--VMLCKVCYREMLLEAKKAKWFYDNIPQ 441
            LN+ E   +LQV+ R  K+   E  R+ R+   ++   K        +   +CL C  +L  F G     C+ C+K VC KC   + GSQK  V LCK+C  +  +  +   WFY  +P+
Sbjct:   46 LNQNEIDVILQVIRRAEKVDTLEQQRIGRLVERLENMRKNVMG----NGMSQCLLCG-ELLGFLGTTSVFCQDCKKKVCTKCGIETVGSQKRQVWLCKICSEQREVWKRSGAWFYKGLPK 160

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Xenopus
Match: selenon (selenoprotein N [Source:Xenbase;Acc:XB-GENE-6456840])

HSP 1 Score: 52.373 bits (124), Expect = 4.191e-7
Identity = 35/123 (28.46%), Postives = 58/123 (47.15%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI--KGELKTYQNKQSKSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L E+E   +LQV+ R+  L   E  RLS +  ++  +G   +   KQ K     C+ C S           C  C+ ++C  C      +K  +C VC +  LL  +  +W+Y+N+
Sbjct:    3 RKLDLSGLTEDEAEHVLQVVQRDFSLRKKEEERLSELKQKLDEEGNKCSILAKQQKFNEHCCIRCCSPFTFLINSKRQCSDCKFNICKNCSSYQKKEKAWICNVCQQTRLLRTQSLEWYYNNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Mouse
Match: Myrip (myosin VIIA and Rab interacting protein [Source:MGI Symbol;Acc:MGI:2384407])

HSP 1 Score: 57.7658 bits (138), Expect = 5.781e-9
Identity = 38/123 (30.89%), Postives = 60/123 (48.78%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELK--TYQNKQSKSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L ++E   +LQV+ R+  L   E  RLS M   +  E    +  +K  K   + C+ C S           C +C+ SVC  CC     +K+ +C VC +  LL  +  +WFY+N+
Sbjct:    3 RKLDLSGLTDDETEHVLQVVQRDFNLRKKEEDRLSEMKQRLAEENSKCSILSKHQKFVERCCMRCCSPFTFLVNARRRCGECKFSVCKSCCSYQKHEKLWVCCVCQQARLLRTQSLEWFYNNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Mouse
Match: Myrip (myosin VIIA and Rab interacting protein [Source:MGI Symbol;Acc:MGI:2384407])

HSP 1 Score: 55.8398 bits (133), Expect = 6.307e-9
Identity = 39/128 (30.47%), Postives = 61/128 (47.66%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELK--TYQNKQSKSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNIPQSTK 450
            R L++S L ++E   +LQV+ R+  L   E  RLS M   +  E    +  +K  K   + C+ C S           C +C+ SVC  CC     +K+ +C VC +  LL  +  +WFY+N+    K
Sbjct:    3 RKLDLSGLTDDETEHVLQVVQRDFNLRKKEEDRLSEMKQRLAEENSKCSILSKHQKFVERCCMRCCSPFTFLVNARRRCGECKFSVCKSCCSYQKHEKLWVCCVCQQARLLRTQSLEWFYNNVKSRFK 130

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Mouse
Match: Rph3al (rabphilin 3A-like (without C2 domains) [Source:MGI Symbol;Acc:MGI:1923492])

HSP 1 Score: 50.8322 bits (120), Expect = 5.122e-7
Identity = 37/121 (30.58%), Postives = 57/121 (47.11%), Query Frame = 1

Query:  103 CLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQSKSTAKECLNCSSDLKDFDG-----CEKCQKSVCVKCC--RSFGSQK-VMLCKVCYREMLLEAKKAKWFYDNIPQ 441
            CL+  E   +LQV+ R  +L   E  R+ R+       L+T Q     +   +CL C   L  F G     C+ C+K VC KC    S G ++ + LCK+C  +  +  +   WFY  +P+
Sbjct:   46 CLSPGELEIILQVIQRAERLDILEQQRIGRLVER----LETMQRNVMGNGLSQCLLCGEVL-GFLGSSSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGLPK 161

[Close]

Query:  103 CLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQSKSTAKECLNCSSDLKDFDG-----CEKCQKSVCVKCC--RSFGSQK-VMLCKVCYREMLLEAKKAKWFYDNIPQ 441
            CL+  E   +LQV+ R  +L   E  R+ R+       L+T Q     +   +CL C   L  F G     C+ C+K VC KC    S G ++ + LCK+C  +  +  +   WFY  +P+
Sbjct:   46 CLSPGELEIILQVIQRAERLDILEQQRIGRLVER----LETMQRNVMGNGLSQCLLCGEVL-GFLGSSSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGLPK 161

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Mouse
Match: Sytl4 (synaptotagmin-like 4 [Source:MGI Symbol;Acc:MGI:1351606])

HSP 1 Score: 48.1358 bits (113), Expect = 7.979e-6
Identity = 36/122 (29.51%), Postives = 55/122 (45.08%), Query Frame = 1

Query:   91 LNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI-----KGELKTYQNKQSKSTAKECLNCSSDLKDF----DGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYD 429
            L++S L+E E+  +L VL R+ +L   +  R+ R+  E+     KG  +  Q+   ++    C  C   L         C  C   VC + CR   S     CKVC +E+ L+     WFYD
Sbjct:    5 LDLSFLSEMERDLILGVLQRDEELRKADEKRIRRLKNELLEIKRKGAKRGSQHYSDRT----CARCQEGLGRLIPKSSTCVGCNHLVC-RECRVLESNGSWRCKVCSKEIELKKATGDWFYD 121

[Close]

BLAST of Si:ch211-106h4.9 vs. UniProt/SwissProt
Match: sp|Q7TNY7|MYRIP_RAT (Rab effector MyRIP OS=Rattus norvegicus OX=10116 GN=Myrip PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 3.935e-8
Identity = 38/123 (30.89%), Postives = 60/123 (48.78%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELK--TYQNKQSKSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L ++E   +LQV+ R+  L   E  RLS M   +  E    +  +K  K   + C+ C S           C +C+ SVC  CC     +K+ +C VC +  LL  +  +WFY+N+
Sbjct:    3 RKLDLSGLTDDETEHVLQVVQRDFNLRKKEEDRLSEMKQRLAEENSKCSILSKHQKFVERCCMRCCSPFTFLVNARRRCGECKFSVCKSCCSYQKHEKLWVCCVCQQARLLRTQSLEWFYNNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. UniProt/SwissProt
Match: sp|Q8K3I4|MYRIP_MOUSE (Rab effector MyRIP OS=Mus musculus OX=10090 GN=Myrip PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.044e-8
Identity = 38/123 (30.89%), Postives = 60/123 (48.78%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELK--TYQNKQSKSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L ++E   +LQV+ R+  L   E  RLS M   +  E    +  +K  K   + C+ C S           C +C+ SVC  CC     +K+ +C VC +  LL  +  +WFY+N+
Sbjct:    3 RKLDLSGLTDDETEHVLQVVQRDFNLRKKEEDRLSEMKQRLAEENSKCSILSKHQKFVERCCMRCCSPFTFLVNARRRCGECKFSVCKSCCSYQKHEKLWVCCVCQQARLLRTQSLEWFYNNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. UniProt/SwissProt
Match: sp|Q8NFW9|MYRIP_HUMAN (Rab effector MyRIP OS=Homo sapiens OX=9606 GN=MYRIP PE=1 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 4.287e-7
Identity = 36/123 (29.27%), Postives = 60/123 (48.78%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI--KGELKTYQNKQSKSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L ++E   +LQV+ R+  L   E  RLS +  ++  +G   +  +K  +     C+ C S           C  C+ +VC  CC     +K  +C VC +  LL A+  +WFY+N+
Sbjct:    3 RKLDLSGLTDDETEHVLQVVQRDFNLRKKEEERLSELKQKLDEEGSKCSILSKHQQFVEHCCMRCCSPFTFLVNTKRQCGDCKFNVCKSCCSYQKHEKAWVCCVCQQARLLRAQSLEWFYNNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. UniProt/SwissProt
Match: sp|A8T6P4|MYRIP_DANRE (Rab effector MyRIP OS=Danio rerio OX=7955 GN=myrip PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.048e-6
Identity = 36/123 (29.27%), Postives = 58/123 (47.15%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELK--TYQNKQSKSTAKECLNCSSD----LKDFDGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L+  E   +L+V+ R+ +L   E  RLS M  E++ E       +KQ K     C+ C S     L     C  C  ++C  CC    S++  +C  C +   L  +  +WFY+N+
Sbjct:    3 RKLDLSGLSNNEAEHVLRVVQRDMQLRKKEEERLSEMKQELEEEGSRCLLLSKQQKFNEHCCIRCCSPFTFLLNPKRQCLDCHYNICKSCCSYSQSERGYICAACQKSRHLRTQSLEWFYNNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. UniProt/SwissProt
Match: sp|O54880|RPH3L_RAT (Rab effector Noc2 OS=Rattus norvegicus OX=10116 GN=Rph3al PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 2.006e-6
Identity = 47/168 (27.98%), Postives = 72/168 (42.86%), Query Frame = 1

Query:  103 CLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQSKSTAKECLNCSSDLKDFDG-----CEKCQKSVCVKCC--RSFGSQK-VMLCKVCYREMLLEAKKAKWFYDNIP------QSTKIDDDNGICPEISQQEERQIQLVSALDDAAYKAAIDRIA 564
            CL+  E   +LQV+ R  +L   E  R+ R+       L+T Q     +   +CL C  ++  F G     C+ C+K VC KC    S G ++ + LCK+C  +  +  +   WFY  +P      ++    DD    P   +  E Q Q  SA     Y  A  R+ 
Sbjct:   46 CLSPGEVEVILQVIQRAERLDILEQQRIGRLVER----LETMQKNVMGNGVSQCLLCG-EMLGFLGSSSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGLPKYILPLKTPGRADDPHFRPLPVEPTEPQPQ--SAEVSRVYTWARGRVV 206

[Close]

BLAST of Si:ch211-106h4.9 vs. TrEMBL
Match: A0A131YKZ1 (Myosin viia and rab OS=Rhipicephalus appendiculatus OX=34631 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.214e-8
Identity = 37/122 (30.33%), Postives = 64/122 (52.46%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQS-KSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R LN+S L++EE  R+L V+ R+ +L   E  RL R++ E++G ++   +++  K   K C +CSS           C +C   VC  C       +   C++C ++  L A+  +WFY+N+
Sbjct:    3 RRLNLSHLSQEECERILAVIQRDLELRAREKERLGRLEEELQGHVRGSAHREVCKDGGKSCAHCSSTFNLLFNRKLVCRECGLFVCRDCATYDSRDRGWYCRLCEQQRSLRAQSCEWFYENV 124

[Close]

BLAST of Si:ch211-106h4.9 vs. TrEMBL
Match: A0A224YUB2 (Myosin viia and rab OS=Rhipicephalus zambeziensis OX=60191 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.257e-8
Identity = 37/122 (30.33%), Postives = 64/122 (52.46%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQS-KSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R LN+S L++EE  R+L V+ R+ +L   E  RL R++ E++G ++   +++  K   K C +CSS           C +C   VC  C       +   C++C ++  L A+  +WFY+N+
Sbjct:    3 RRLNLSHLSQEECERILAVIQRDLELRAREKERLGRLEEELQGHVRGSAHREVCKDGGKSCAHCSSTFNLLFNRKLVCRECGLFVCRDCATYDSRDRGWYCRLCEQQRSLRAQSCEWFYENV 124

[Close]

BLAST of Si:ch211-106h4.9 vs. TrEMBL
Match: A0A131YIH2 (Myosin viia and rab OS=Rhipicephalus appendiculatus OX=34631 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.294e-8
Identity = 37/122 (30.33%), Postives = 64/122 (52.46%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQS-KSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R LN+S L++EE  R+L V+ R+ +L   E  RL R++ E++G ++   +++  K   K C +CSS           C +C   VC  C       +   C++C ++  L A+  +WFY+N+
Sbjct:    3 RRLNLSHLSQEECERILAVIQRDLELRAREKERLGRLEEELQGHVRGSAHREVCKDGGKSCAHCSSTFNLLFNRKLVCRECGLFVCRDCATYDSRDRGWYCRLCEQQRSLRAQSCEWFYENV 124

[Close]

BLAST of Si:ch211-106h4.9 vs. TrEMBL
Match: A0A224Z4L5 (Myosin viia and rab OS=Rhipicephalus zambeziensis OX=60191 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.314e-8
Identity = 37/122 (30.33%), Postives = 64/122 (52.46%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQS-KSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R LN+S L++EE  R+L V+ R+ +L   E  RL R++ E++G ++   +++  K   K C +CSS           C +C   VC  C       +   C++C ++  L A+  +WFY+N+
Sbjct:    3 RRLNLSHLSQEECERILAVIQRDLELRAREKERLGRLEEELQGHVRGSAHREVCKDGGKSCAHCSSTFNLLFNRKLVCRECGLFVCRDCATYDSRDRGWYCRLCEQQRSLRAQSCEWFYENV 124

[Close]

BLAST of Si:ch211-106h4.9 vs. TrEMBL
Match: A0A131YIM5 (Myosin viia and rab OS=Rhipicephalus appendiculatus OX=34631 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.314e-8
Identity = 37/122 (30.33%), Postives = 64/122 (52.46%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQS-KSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R LN+S L++EE  R+L V+ R+ +L   E  RL R++ E++G ++   +++  K   K C +CSS           C +C   VC  C       +   C++C ++  L A+  +WFY+N+
Sbjct:    3 RRLNLSHLSQEECERILAVIQRDLELRAREKERLGRLEEELQGHVRGSAHREVCKDGGKSCAHCSSTFNLLFNRKLVCRECGLFVCRDCATYDSRDRGWYCRLCEQQRSLRAQSCEWFYENV 124

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Cavefish
Match: si:ch211-106h4.9 (rab effector MyRIP-like [Source:NCBI gene;Acc:103028056])

HSP 1 Score: 62.003 bits (149), Expect = 1.930e-10
Identity = 39/123 (31.71%), Postives = 61/123 (49.59%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELK--TYQNKQSKSTAKECLNCSSD----LKDFDGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L EEE   +LQV+ R+ +L   E  RLS +  E+  E       ++Q     + C+ C S     LK    C  C  ++C +CC    ++K  LC  C +  LL+ +  +WFY N+
Sbjct:    4 RKLDLSTLTEEEAEHVLQVVQRDMRLRKTEEERLSDLKQELDEEDSRCVLLSRQQGFNQRCCIRCCSPFTFLLKPRRRCLDCNYNICKRCCSYSSTEKGWLCSACEKSRLLKTQSLEWFYSNV 126

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Cavefish
Match: si:ch211-106h4.9 (rab effector MyRIP-like [Source:NCBI gene;Acc:103028056])

HSP 1 Score: 62.003 bits (149), Expect = 2.026e-10
Identity = 39/123 (31.71%), Postives = 61/123 (49.59%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELK--TYQNKQSKSTAKECLNCSSD----LKDFDGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L EEE   +LQV+ R+ +L   E  RLS +  E+  E       ++Q     + C+ C S     LK    C  C  ++C +CC    ++K  LC  C +  LL+ +  +WFY N+
Sbjct:    4 RKLDLSTLTEEEAEHVLQVVQRDMRLRKTEEERLSDLKQELDEEDSRCVLLSRQQGFNQRCCIRCCSPFTFLLKPRRRCLDCNYNICKRCCSYSSTEKGWLCSACEKSRLLKTQSLEWFYSNV 126

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Cavefish
Match: sytl4 (synaptotagmin like 4 [Source:NCBI gene;Acc:103045066])

HSP 1 Score: 50.0618 bits (118), Expect = 1.195e-6
Identity = 33/126 (26.19%), Postives = 58/126 (46.03%), Query Frame = 1

Query:   79 TLRDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI-----KGELKTYQNKQSKSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYD 429
            ++  +N+S L + E+  +L VL R+ +L + E  R+ R+  E+     KG  ++  N  ++S    C  C   +         C  C+  VC + C +    +  +C VC +E  L+     WFYD
Sbjct:    4 SMETINVSFLTDSERDLILNVLRRDEELRHLEEKRVKRLKFELLEIRRKGAKRSSGNYSTRS----CGRCQQPMGRLGSRTNQCPVCKHEVC-QNCHAVRPNRAWVCSVCAKEADLKKSTGDWFYD 124

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Cavefish
Match: sytl4 (synaptotagmin like 4 [Source:NCBI gene;Acc:103045066])

HSP 1 Score: 48.9062 bits (115), Expect = 2.739e-6
Identity = 33/126 (26.19%), Postives = 58/126 (46.03%), Query Frame = 1

Query:   79 TLRDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI-----KGELKTYQNKQSKSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYD 429
            ++  +N+S L + E+  +L VL R+ +L + E  R+ R+  E+     KG  ++  N  ++S    C  C   +         C  C+  VC + C +    +  +C VC +E  L+     WFYD
Sbjct:    4 SMETINVSFLTDSERDLILNVLRRDEELRHLEEKRVKRLKFELLEIRRKGAKRSSGNYSTRS----CGRCQQPMGRLGSRTNQCPVCKHEVC-QNCHAVRPNRAWVCSVCAKEADLKKSTGDWFYD 124

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Cavefish
Match: RIMS2 (regulating synaptic membrane exocytosis 2 [Source:HGNC Symbol;Acc:HGNC:17283])

HSP 1 Score: 48.9062 bits (115), Expect = 3.909e-6
Identity = 43/137 (31.39%), Postives = 61/137 (44.53%), Query Frame = 1

Query:   61 SIAKPLTLRDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI---KGELK-----TYQNKQSKSTAKECLNCSSDLKDFDG----CEKCQKSVCVKCCR--SFGSQKVM-LCKVCYREMLLEAKKAKWFY 426
            S A P  + DL  S L EEE+  +L V+DR  K    E   L ++  +    K ++K     T + +  KS +  C  C    K  DG    C  CQ   C +C    S  S KVM +C +C ++  +  K   WFY
Sbjct:   10 SPAAPPDMPDL--SHLTEEERKIILSVMDRQKKEEEKEQSMLKKLHQQFEMYKDQVKKIGEETQKTQDQKSDSPTCGICHKT-KFADGCGHVCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFY 143

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009931.1 (pep scaffold:Pmarinus_7.0:GL476634:726032:749970:1 gene:ENSPMAG00000008982.1 transcript:ENSPMAT00000009931.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 45.0542 bits (105), Expect = 5.572e-6
Identity = 34/122 (27.87%), Postives = 63/122 (51.64%), Query Frame = 1

Query:  106 LNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI--KGELKTYQNKQSKSTAKECLNCSSD-LKDFDGCEKCQKSVCVKCCR---SFGSQ-KVMLCKVCYREMLLEAKKAKWFYDNIPQSTK 450
            L+++E + +++VL R+  L   E+ ++  +   +  K  +     +Q     K C+ C S  L   +  E+CQ S C+  CR   ++  Q K  LC VC ++ LL+A+  +W+YD + +  K
Sbjct:   10 LSQDEAAHIMEVLQRDAHLRQLEDRKIGELKEHLQEKKSMMGLLARQEAFNDKCCILCYSPFLILINSRERCQ-SCCLYVCRDCSAYNRQAKARLCSVCLKQRLLKARSFEWYYDTVRKRFK 130

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Medaka
Match: myrip (myosin VIIA and Rab interacting protein [Source:NCBI gene;Acc:101165516])

HSP 1 Score: 56.6102 bits (135), Expect = 1.017e-8
Identity = 36/123 (29.27%), Postives = 59/123 (47.97%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI--KGELKTYQNKQSKSTAKECLNCSSD----LKDFDGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L++S L ++E   +L+V+ R+ KL   E  RLS M  E+  +G   +  +KQ +     C+ C +     L     C  CQ +VC  CC      K  LC  C +  +   +  +W+Y+N+
Sbjct:    3 RKLDLSGLTDDEAEHVLKVVQRDMKLRKKEEARLSEMKQELAEEGSRCSILSKQQRFNEHCCIRCCAPFTFLLNPKRQCLDCQYNVCKTCCTYSKKDKAWLCSACQKGRIYRTQSLEWYYNNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Medaka
Match: si:ch211-106h4.9 (rab effector MyRIP [Source:NCBI gene;Acc:101164255])

HSP 1 Score: 53.5286 bits (127), Expect = 1.054e-7
Identity = 38/124 (30.65%), Postives = 63/124 (50.81%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI--KGELKTYQNKQSKSTAKECLNCSSD----LKDFDGCEKCQKSVCVKCCRSFGSQ-KVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L+++ L E E + +LQV+ R+ KL   +  RLS +  E+  +G      ++Q+    + C+ C S     L     C  C  +VC K CR +  + ++ LC  C +  LL+A   +WFY N+
Sbjct:    3 RKLDLTGLTEGEAAHVLQVVQRDMKLRKKDEERLSELKQELDEEGSRCLLLSRQTCFNRRCCIRCCSPFSFLLNPKRQCSSCSYNVC-KACRVYNKRDRIWLCSACQKSRLLKALSLEWFYSNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Medaka
Match: si:ch211-106h4.9 (rab effector MyRIP [Source:NCBI gene;Acc:101164255])

HSP 1 Score: 53.5286 bits (127), Expect = 1.120e-7
Identity = 38/124 (30.65%), Postives = 63/124 (50.81%), Query Frame = 1

Query:   85 RDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI--KGELKTYQNKQSKSTAKECLNCSSD----LKDFDGCEKCQKSVCVKCCRSFGSQ-KVMLCKVCYREMLLEAKKAKWFYDNI 435
            R L+++ L E E + +LQV+ R+ KL   +  RLS +  E+  +G      ++Q+    + C+ C S     L     C  C  +VC K CR +  + ++ LC  C +  LL+A   +WFY N+
Sbjct:    3 RKLDLTGLTEGEAAHVLQVVQRDMKLRKKDEERLSELKQELDEEGSRCLLLSRQTCFNRRCCIRCCSPFSFLLNPKRQCSSCSYNVC-KACRVYNKRDRIWLCSACQKSRLLKALSLEWFYSNV 125

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Medaka
Match: sytl4 (synaptotagmin like 4 [Source:NCBI gene;Acc:101163586])

HSP 1 Score: 49.6766 bits (117), Expect = 1.616e-6
Identity = 36/124 (29.03%), Postives = 64/124 (51.61%), Query Frame = 1

Query:   76 LTLRDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI-----KGELKTYQNKQSKSTAKECLNCSSDLKDFDG-CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYD 429
            + L  +N+S L++ E+ ++L+VL R+ +L   E  R+ ++ TE+     KG  K    K S+ +   C    S L  F+  C+ C+ +VC + C++        C VC +E  ++ +   WFYD
Sbjct:    1 MALEMINLSFLSDLEREKILEVLKRDEELRLTEERRVRKLKTELLEVKRKGA-KRSSGKYSEHSCGRCQEPLSRLAVFNSQCKICKHNVC-RNCQAVLPDGSWFCTVCVKESDVKKRTGDWFYD 122

[Close]

BLAST of Si:ch211-106h4.9 vs. Ensembl Medaka
Match: sytl4 (synaptotagmin like 4 [Source:NCBI gene;Acc:101163586])

HSP 1 Score: 49.6766 bits (117), Expect = 1.678e-6
Identity = 36/124 (29.03%), Postives = 64/124 (51.61%), Query Frame = 1

Query:   76 LTLRDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI-----KGELKTYQNKQSKSTAKECLNCSSDLKDFDG-CEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYD 429
            + L  +N+S L++ E+ ++L+VL R+ +L   E  R+ ++ TE+     KG  K    K S+ +   C    S L  F+  C+ C+ +VC + C++        C VC +E  ++ +   WFYD
Sbjct:    1 MALEMINLSFLSDLEREKILEVLKRDEELRLTEERRVRKLKTELLEVKRKGA-KRSSGKYSEHSCGRCQEPLSRLAVFNSQCKICKHNVC-RNCQAVLPDGSWFCTVCVKESDVKKRTGDWFYD 122

[Close]

BLAST of Si:ch211-106h4.9 vs. Planmine SMEST
Match: SMESG000026729.1 (SMESG000026729.1)

HSP 1 Score: 477.248 bits (1227), Expect = 5.614e-173
Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 1

Query:   58 MSIAKPLTLRDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQSKSTAKECLNCSSDLKDFDGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNIPQSTKIDDDNGICPEISQQEERQIQLVSALDDAAYKAAIDRIADKLNEIDVENTNLSKSRFGPKKTFGKPPVSQQKDKLKSTSQSEKENKENKLAMDNFIAKITEYNEQM 765
            MSIAKPLTLRDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQSKSTAKECLNCSSDLKDFDGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNIPQSTKIDDDNGICPEISQQEERQIQLVSALDDAAYKAAIDRIADKLNEIDVENTNLSKSRFGPKKTFGKP VSQQ+DKLKSTSQSEKENKENKLAMDNFIAKITEYNEQM
Sbjct:    1 MSIAKPLTLRDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQSKSTAKECLNCSSDLKDFDGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNIPQSTKIDDDNGICPEISQQEERQIQLVSALDDAAYKAAIDRIADKLNEIDVENTNLSKSRFGPKKTFGKPQVSQQRDKLKSTSQSEKENKENKLAMDNFIAKITEYNEQM 236

[Close]

BLAST of Si:ch211-106h4.9 vs. Planmine SMEST
Match: SMESG000078217.1 (SMESG000078217.1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.488e-6
Identity = 41/151 (27.15%), Postives = 60/151 (39.74%), Query Frame = 1

Query:  106 LNEEEKSRLLQVLDRNNKLVNHENVRLSRMDT--------EIKGEL----------KTYQNKQSK--------------STAKECLNCSSDLK---------DFDGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNI 435
            L E EK +L  VL+RN KL   E+ RL ++ +        EI  E             Y+N  S+              +    C++C              +   C  C+  +C KC        V +CK C++ +L EAK  KWFY+NI
Sbjct:   19 LTESEKKKLEVVLNRNEKLNKKEHARLRKLSSTESESTFVEICPEYNLSTRSLNSCHLYRNSVSEIMKENFKKNNTLEINLIGNCISCGRRFSILPWSCASPNGSSCILCKSKMCKKCTHHMDRPNVEICKSCHKNILFEAKSGKWFYNNI 169

[Close]

BLAST of Si:ch211-106h4.9 vs. Planmine SMEST
Match: SMESG000010162.1 (SMESG000010162.1)

HSP 1 Score: 48.521 bits (114), Expect = 3.222e-6
Identity = 45/177 (25.42%), Postives = 81/177 (45.76%), Query Frame = 1

Query:  118 EKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQSKSTAKECLNCSSDL----KDFDGCEKCQKSVCVKCCRSFGSQKVM-LCKVCYREMLLEAKKAKWFYDNIPQSTK---IDDDNGICPEISQQEERQIQLVSALDDAAYKAAIDRIADKLNEIDVENTNLSKSRFGP 624
            E  +L+ VL++N  +   E+ R+  ++ E+    K  +  + K+    C  C+S         + C+ CQ  VC  C     S KVM LCK+CY+E L + K   W  +   ++ +   + + N   P I ++ ER +Q     +   Y  A D    +++ +  +  NL  +R+ P
Sbjct:   24 EIKKLMVVLNKNEDIERRESKRVKMLERELNFFRKIIREIEIKTN--HCSICNSQFIICFNPVNICQFCQNEVCGNCMVFIKSPKVMQLCKLCYKEWLKQVKSGNWLLEIAKETDRQISVLERNQKLPMIQKEIERLLQ-----EKVEYSKAND-FKTQIDNLICKKDNLHTNRYEP 192

[Close]

BLAST of Si:ch211-106h4.9 vs. Planmine SMEST
Match: SMESG000014370.1 (SMESG000014370.1)

HSP 1 Score: 46.9802 bits (110), Expect = 9.778e-6
Identity = 32/125 (25.60%), Postives = 58/125 (46.40%), Query Frame = 1

Query:   97 ISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEIKGELKTYQNKQSKSTAKECLNCS-----SDLKDFDGCEKCQKSVCVKCCRSFGSQKVMLCKVCYREMLLEAKKAKWFYDNIPQSTKID 456
            I  +NE E +R+ ++      +++ EN +LS     +    K  +N    S    CL+       S  +    C  CQ  VC  C RS   +K+ +C  C+++++L+AK   WF+  + +   +D
Sbjct:   38 IDAINELEANRIRRL---KTLIISQENAKLS----SVHPNNKALKNLLCHSCGSYCLSSRIAIGKSSTRSSILCRICQLPVCHSCWRSVVDKKLKICPSCHKKIVLDAKTGNWFHQQMKKRLSVD 155

The following BLAST results are available for this feature:

BLAST of Si:ch211-106h4.9 vs. Ensembl Human
BLAST of Si:ch211-106h4.9 vs. Ensembl Celegans
BLAST of Si:ch211-106h4.9 vs. Ensembl Fly
BLAST of Si:ch211-106h4.9 vs. Ensembl Zebrafish
BLAST of Si:ch211-106h4.9 vs. Ensembl Xenopus
BLAST of Si:ch211-106h4.9 vs. Ensembl Mouse
BLAST of Si:ch211-106h4.9 vs. UniProt/SwissProt
BLAST of Si:ch211-106h4.9 vs. TrEMBL
BLAST of Si:ch211-106h4.9 vs. Ensembl Cavefish
BLAST of Si:ch211-106h4.9 vs. Ensembl Sea Lamprey
BLAST of Si:ch211-106h4.9 vs. Ensembl Yeast
BLAST of Si:ch211-106h4.9 vs. Ensembl Nematostella
BLAST of Si:ch211-106h4.9 vs. Ensembl Medaka
BLAST of Si:ch211-106h4.9 vs. Planmine SMEST

BLAST of Si:ch211-106h4.9 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
MYRIP	8.763e-8	29.27	myosin VIIA and Rab interacting protein [Source:HG...	[more]
MYRIP	8.927e-8	29.27	myosin VIIA and Rab interacting protein [Source:HG...	[more]
MYRIP	8.927e-8	29.27	myosin VIIA and Rab interacting protein [Source:HG...	[more]
MYRIP	9.337e-8	29.27	myosin VIIA and Rab interacting protein [Source:HG...	[more]
SYTL4	1.220e-6	30.33	synaptotagmin like 4 [Source:HGNC Symbol;Acc:HGNC:...	[more]

BLAST of Si:ch211-106h4.9 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Si:ch211-106h4.9 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Si:ch211-106h4.9 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
si:ch211-106h4.9	3.696e-8	27.64	si:ch211-106h4.9 [Source:ZFIN;Acc:ZDB-GENE-070705-...	[more]
myrip	5.141e-8	29.27	Danio rerio myosin VIIA and Rab interacting protei...	[more]
si:ch211-106h4.9	5.912e-8	27.34	si:ch211-106h4.9 [Source:ZFIN;Acc:ZDB-GENE-070705-...	[more]
si:ch211-106h4.9	8.276e-8	27.64	si:ch211-106h4.9 [Source:ZFIN;Acc:ZDB-GENE-070705-...	[more]
sytl4	1.201e-7	28.93	synaptotagmin-like 4 [Source:ZFIN;Acc:ZDB-GENE-070...	[more]

BLAST of Si:ch211-106h4.9 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rph3al	5.364e-8	31.67	rabphilin 3A like (without C2 domains) [Source:NCB...	[more]
rph3al	5.885e-8	31.67	rabphilin 3A like (without C2 domains) [Source:NCB...	[more]
rph3al	6.154e-8	31.67	rabphilin 3A like (without C2 domains) [Source:NCB...	[more]
rph3al	6.217e-8	31.67	rabphilin 3A like (without C2 domains) [Source:NCB...	[more]
selenon	4.191e-7	28.46	selenoprotein N [Source:Xenbase;Acc:XB-GENE-645684...	[more]

BLAST of Si:ch211-106h4.9 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Myrip	5.781e-9	30.89	myosin VIIA and Rab interacting protein [Source:MG...	[more]
Myrip	6.307e-9	30.47	myosin VIIA and Rab interacting protein [Source:MG...	[more]
Rph3al	5.122e-7	30.58	rabphilin 3A-like (without C2 domains) [Source:MGI...	[more]
Rph3al	5.122e-7	30.58	rabphilin 3A-like (without C2 domains) [Source:MGI...	[more]
Sytl4	7.979e-6	29.51	synaptotagmin-like 4 [Source:MGI Symbol;Acc:MGI:13...	[more]

BLAST of Si:ch211-106h4.9 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q7TNY7\|MYRIP_RAT	3.935e-8	30.89	Rab effector MyRIP OS=Rattus norvegicus OX=10116 G...	[more]
sp\|Q8K3I4\|MYRIP_MOUSE	4.044e-8	30.89	Rab effector MyRIP OS=Mus musculus OX=10090 GN=Myr...	[more]
sp\|Q8NFW9\|MYRIP_HUMAN	4.287e-7	29.27	Rab effector MyRIP OS=Homo sapiens OX=9606 GN=MYRI...	[more]
sp\|A8T6P4\|MYRIP_DANRE	1.048e-6	29.27	Rab effector MyRIP OS=Danio rerio OX=7955 GN=myrip...	[more]
sp\|O54880\|RPH3L_RAT	2.006e-6	27.98	Rab effector Noc2 OS=Rattus norvegicus OX=10116 GN...	[more]

BLAST of Si:ch211-106h4.9 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A131YKZ1	3.214e-8	30.33	Myosin viia and rab OS=Rhipicephalus appendiculatu...	[more]
A0A224YUB2	3.257e-8	30.33	Myosin viia and rab OS=Rhipicephalus zambeziensis ...	[more]
A0A131YIH2	3.294e-8	30.33	Myosin viia and rab OS=Rhipicephalus appendiculatu...	[more]
A0A224Z4L5	3.314e-8	30.33	Myosin viia and rab OS=Rhipicephalus zambeziensis ...	[more]
A0A131YIM5	3.314e-8	30.33	Myosin viia and rab OS=Rhipicephalus appendiculatu...	[more]

BLAST of Si:ch211-106h4.9 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
si:ch211-106h4.9	1.930e-10	31.71	rab effector MyRIP-like [Source:NCBI gene;Acc:1030...	[more]
si:ch211-106h4.9	2.026e-10	31.71	rab effector MyRIP-like [Source:NCBI gene;Acc:1030...	[more]
sytl4	1.195e-6	26.19	synaptotagmin like 4 [Source:NCBI gene;Acc:1030450...	[more]
sytl4	2.739e-6	26.19	synaptotagmin like 4 [Source:NCBI gene;Acc:1030450...	[more]
RIMS2	3.909e-6	31.39	regulating synaptic membrane exocytosis 2 [Source:...	[more]

BLAST of Si:ch211-106h4.9 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
ENSPMAT00000009931.1	5.572e-6	27.87	pep scaffold:Pmarinus_7.0:GL476634:726032:749970:1...	[more]

BLAST of Si:ch211-106h4.9 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Si:ch211-106h4.9 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Si:ch211-106h4.9 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
myrip	1.017e-8	29.27	myosin VIIA and Rab interacting protein [Source:NC...	[more]
si:ch211-106h4.9	1.054e-7	30.65	rab effector MyRIP [Source:NCBI gene;Acc:101164255...	[more]
si:ch211-106h4.9	1.120e-7	30.65	rab effector MyRIP [Source:NCBI gene;Acc:101164255...	[more]
sytl4	1.616e-6	29.03	synaptotagmin like 4 [Source:NCBI gene;Acc:1011635...	[more]
sytl4	1.678e-6	29.03	synaptotagmin like 4 [Source:NCBI gene;Acc:1011635...	[more]

BLAST of Si:ch211-106h4.9 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4


Match Name	E-value	Identity	Description
SMESG000026729.1	5.614e-173	99.15	SMESG000026729.1	[more]
SMESG000078217.1	1.488e-6	27.15	SMESG000078217.1	[more]
SMESG000010162.1	3.222e-6	25.42	SMESG000010162.1	[more]
SMESG000014370.1	9.778e-6	25.60	SMESG000014370.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30024475 ID=SMED30024475|Name=Si:ch211-106h4.9|organism=Schmidtea mediterranea sexual|type=transcript|length=814bp
GGTCATCTAGTGCAAAGCATTATTTGACCATAATTATTCATAACTGTATT
GTCAACAATGTCAATAGCGAAACCTTTAACTTTGCGCGATCTTAATATAA
GTTGTTTAAATGAAGAGGAAAAATCTCGATTACTTCAAGTTTTGGATAGA
AATAACAAACTGGTAAATCATGAAAATGTTCGTTTAAGTCGAATGGATAC
TGAAATCAAAGGAGAACTGAAAACGTATCAGAATAAACAATCAAAGTCAA
CGGCAAAAGAATGTCTAAACTGTTCGAGCGATCTTAAGGACTTTGACGGA
TGTGAAAAATGCCAGAAAAGTGTTTGTGTAAAATGCTGTCGGTCTTTCGG
TTCTCAAAAAGTGATGCTATGCAAAGTCTGTTACAGAGAAATGTTGCTGG
AAGCGAAAAAGGCTAAATGGTTTTATGACAACATTCCACAATCCACAAAA
ATTGACGATGACAATGGAATTTGTCCGGAGATCTCCCAGCAGGAAGAACG
ACAAATCCAACTGGTGAGTGCGCTAGATGACGCGGCATACAAGGCAGCGA
TTGATAGAATCGCGGATAAATTAAACGAAATTGACGTTGAGAACACAAAT
TTGTCGAAATCCCGTTTTGGACCGAAGAAAACATTCGGTAAACCTCCGGT
TTCCCAGCAAAAGGATAAGCTGAAAAGTACTTCTCAAAGCGAAAAAGAAA
ACAAGGAAAACAAACTTGCAATGGATAATTTCATAGCGAAAATTACCGAA
TACAATGAACAAATGAAAAAATAAAATTAAAAAAAGATTGAAAAAACACG
ATGAAATTGAACAA

protein sequence of SMED30024475-orf-1

>SMED30024475-orf-1 ID=SMED30024475-orf-1|Name=SMED30024475-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=239bp
MSIAKPLTLRDLNISCLNEEEKSRLLQVLDRNNKLVNHENVRLSRMDTEI
KGELKTYQNKQSKSTAKECLNCSSDLKDFDGCEKCQKSVCVKCCRSFGSQ
KVMLCKVCYREMLLEAKKAKWFYDNIPQSTKIDDDNGICPEISQQEERQI
QLVSALDDAAYKAAIDRIADKLNEIDVENTNLSKSRFGPKKTFGKPPVSQ
QKDKLKSTSQSEKENKENKLAMDNFIAKITEYNEQMKK*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0046872	metal ion binding
GO:0017137	Rab GTPase binding

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000034	epidermis
PLANA:0002032	epidermal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR041282	FYVE_2
IPR013083	Znf_RING/FYVE/PHD
IPR011011	Znf_FYVE_PHD
IPR010911	Rab_BD

Vocabulary: **biological process**
Term	Definition
GO:0006886	intracellular protein transport

Vocabulary: **cellular component**
Term	Definition
GO:0005622	intracellular

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 6..146 e-value: 4.4E-19 score: 70.3
IPR041282	FYVE-type zinc finger	PFAM	PF02318	FYVE_2	coord: 15..126 e-value: 1.7E-14 score: 54.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..220
IPR010911	Rab-binding domain	PROSITE	PS50916	RABBD	coord: 11..125 score: 10.35
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	coord: 17..131

Main menu

Si:ch211-106h4.9

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Owlery

blazegraph-runner