Small heat shock protein p36

Overview
NameSmall heat shock protein p36
Smed IDSMED30024367
Length (bp)1408
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Small heat shock protein p36 (SMED30024367) t-SNE clustered cells

Violin plots show distribution of expression levels for Small heat shock protein p36 (SMED30024367) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Small heat shock protein p36 (SMED30024367) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Small heat shock protein p36 (SMED30024367) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30024367

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Smed sexual biotypeSMED30024367h1SMcG0006610 Contig39404uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30024367h1SMcG0006610 Contig39404newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
nervous systemSMED30024367h1SMcG0006610 dd_Smed_v4_2736_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30024367h1SMcG0006610 dd_Smed_v4_2736_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30024367h1SMcG0006610 dd_Smed_v4_2736_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30024367h1SMcG0006610 dd_Smed_v4_2736_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30024367h1SMcG0006610 dd_Smed_v4_2736_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynx musculatureSMED30024367h1SMcG0006610 dd_Smed_v6_2736_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
musculature systemSMED30024367h1SMcG0006610 dd_Smed_v6_2736_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Small heat shock protein p36 vs. Ensembl Celegans
Match: F08H9.4 (pep chromosome:WBcel235:V:14463588:14463896:-1 gene:WBGene00008592.1 transcript:F08H9.4b.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F08H9.4)

HSP 1 Score: 50.8322 bits (120), Expect = 6.299e-8
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:  586 SDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAP 825
            S+DK   F V L+   FKPE+LKV  +  +++I    +    +  S K FS+ I +P  VDI     + +NDG L +EAP
Sbjct:    3 SNDK---FAVNLNVSNFKPEELKVNLEGRQLSIQGEHDVENEHGASRKSFSRMILLPEDVDITSVATNLSNDGKLCIEAP 79

HSP 2 Score: 48.1358 bits (113), Expect = 6.456e-7
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 1 
Query: 1006 DYEPSDFSVYTELNQIHIKGRHEVKTANSSSFKEFSRYYEVPETLDPMSVSFHLL-DGTLVVEAPLLRSV 1212
            +++P +  V  E  Q+ I+G H+V+  + +S K FSR   +PE +D  SV+ +L  DG L +EAP L  V
Sbjct:   15 NFKPEELKVNLEGRQLSIQGEHDVENEHGASRKSFSRMILLPEDVDITSVATNLSNDGKLCIEAPKLEGV 84
[Close]
BLAST of Small heat shock protein p36 vs. Ensembl Celegans
Match: F08H9.4 (pep chromosome:WBcel235:V:14463588:14464428:-1 gene:WBGene00008592.1 transcript:F08H9.4a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F08H9.4)

HSP 1 Score: 51.9878 bits (123), Expect = 7.833e-8
Identity = 32/101 (31.68%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:  916 LVKVTGQSGPVVVDDAIYGKKIHLEIPVD-KDYEPSDFSVYTELNQIHIKGRHEVKTANSSSFKEFSRYYEVPETLDPMSVSFHLL-DGTLVVEAPLLRSV 1212
            L+ ++G   P+  D  I        + ++  +++P +  V  E  Q+ I+G H+V+  + +S K FSR   +PE +D  SV+ +L  DG L +EAP L  V
Sbjct:   29 LMPISGTFNPMTDDSEIMNSNDKFAVNLNVSNFKPEELKVNLEGRQLSIQGEHDVENEHGASRKSFSRMILLPEDVDITSVATNLSNDGKLCIEAPKLEGV 129

HSP 2 Score: 51.6026 bits (122), Expect = 9.133e-8
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:  586 SDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAP 825
            S+DK   F V L+   FKPE+LKV  +  +++I    +    +  S K FS+ I +P  VDI     + +NDG L +EAP
Sbjct:   48 SNDK---FAVNLNVSNFKPEELKVNLEGRQLSIQGEHDVENEHGASRKSFSRMILLPEDVDITSVATNLSNDGKLCIEAP 124
[Close]
BLAST of Small heat shock protein p36 vs. Ensembl Celegans
Match: hsp-16.49 (Heat shock protein Hsp-16.48/Hsp-16.49 [Source:UniProtKB/Swiss-Prot;Acc:P02513])

HSP 1 Score: 50.0618 bits (118), Expect = 2.704e-7
Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 1 
Query:  607 FKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTL 858
            F V+LD   FKPEDLK+     ++ I   +E  + +  S + FSK I +P  VD+   +   +N+G L +EAP K   + S+ +
Sbjct:   54 FSVQLDVSHFKPEDLKIELDGRELKIEGIQEKKSEHGYSKRSFSKMILLPEDVDLTSVKSAISNEGKLQIEAPKKTNSSRSIPI 137
[Close]
BLAST of Small heat shock protein p36 vs. Ensembl Celegans
Match: hsp-16.48 (Heat shock protein Hsp-16.48/Hsp-16.49 [Source:UniProtKB/Swiss-Prot;Acc:P02513])

HSP 1 Score: 50.0618 bits (118), Expect = 2.704e-7
Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 1 
Query:  607 FKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTL 858
            F V+LD   FKPEDLK+     ++ I   +E  + +  S + FSK I +P  VD+   +   +N+G L +EAP K   + S+ +
Sbjct:   54 FSVQLDVSHFKPEDLKIELDGRELKIEGIQEKKSEHGYSKRSFSKMILLPEDVDLTSVKSAISNEGKLQIEAPKKTNSSRSIPI 137
[Close]
BLAST of Small heat shock protein p36 vs. Ensembl Celegans
Match: hsp-25 (Heat Shock Protein [Source:UniProtKB/TrEMBL;Acc:Q86GU1])

HSP 1 Score: 48.521 bits (114), Expect = 4.257e-7
Identity = 20/76 (26.32%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:  607 FKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQ 834
             ++R D   +KPE++ V   D+++ ++A+ E  T  +  F+E+++   +P   + ++     + DG+L +EAP+ Q
Sbjct:   28 LRLRFDVANYKPEEVTVKTIDNRLLVHAKHEEKTPQRTVFREYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 103

HSP 2 Score: 47.3654 bits (111), Expect = 1.193e-6
Identity = 29/88 (32.95%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:  940 GPVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTANSSSFKEFSRYYEVPETLDPMSVSFHL-LDGTLVVEAPL 1200
             P++ D++  GK + L   V  +Y+P + +V T  N++ +  +HE KT   + F+E+++ + +P   +P  +S  L  DG L VEAPL
Sbjct:   16 SPLIKDESD-GKTLRLRFDV-ANYKPEEVTVKTIDNRLLVHAKHEEKTPQRTVFREYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPL 101
[Close]
BLAST of Small heat shock protein p36 vs. UniProt/SwissProt
Match: sp|P12812|P40_SCHMA (Major egg antigen OS=Schistosoma mansoni OX=6183 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.420e-69
Identity = 129/372 (34.68%), Postives = 204/372 (54.84%), Query Frame = 1 
Query:  118 HQEITIPVNRDSRNFEQRRKDMFSKLESSVSTHTTSENKTVATKSQFGHDDLWDLEIKDWVXXXXXXWDQDFAKIKRGLFDLEPIEGY--GDFSNSDTTHHSVASYTQKIVTSDGKTKTESSKSFHTTSGEPVQNLERQDYSQKCLTGTDFFKDAYEISDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTLKDG--LGVKAISD---RHSTFSNSLVKVTGQSGPVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTAN----SSSFKEFSRYYEVPETLDPMSVSFHLLDGTLVVEAPL 1200
            H  ++IPVNR+ R+FE++R+D+ + LE     H      ++A  ++      W   + +W+  S   WD D  +++RG+F L P++ +  G   N     H +    Q I    G     S+ S +                       DF KDAYE+ +D  VHFKVR D  GF P+D+ V + +++VT++A+KET T  +K  +EF + + +P S+D  + +C  T+DG+L+LEAP+K  +N S+TL +   + V+  SD   +    S +LV   G  G   VDD   GK++H+E+ VD  Y+P D  V  + N++ + GRH  + ++    SSSF EFS+ Y +PET+DP+SVS  ++  TLV+EAPL
Sbjct:    7 HNAVSIPVNREQRSFEKQRRDLLTGLEHGGGAH---RGNSIAPYTED-----WPSTVDNWIDSSWKRWDDDMRRLRRGMFALLPLDTFSIGILENPFALMHQMDRQIQDIRERMGSLDVPSTGSVN-----------------------DFLKDAYEVGEDGKVHFKVRFDAQGFAPQDINVTSSENRVTVHAKKETTTDGRKCSREFCRMVQLPKSIDDSQLKCRMTDDGVLMLEAPVKVDQNQSLTLNESGQVAVRPKSDNQIKAVPASQALV-AKGVHGLSYVDDGSGGKRLHVEVAVDPVYKPEDLFVNVDSNRVVVSGRHHKQKSDQHGRSSSFAEFSQSYAIPETVDPLSVSAQVVGNTLVLEAPL 346
[Close]
BLAST of Small heat shock protein p36 vs. UniProt/SwissProt
Match: sp|Q7YZT0|TSP36_TAESA (Small heat shock protein p36 OS=Taenia saginata OX=6206 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.816e-31
Identity = 92/318 (28.93%), Postives = 147/318 (46.23%), Query Frame = 1 
Query:  283 EIKDWVXXXXXXWDQDFAKIKRGLFDLEPIEGYGDFSNSDTTHHSVASYTQKIVTSDGKTKTESSKSFHTTSGEPVQNLERQDYSQKCLTGTDFFKDAYEISDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQ--ENISVTLKDGLGVKA--ISDRHSTFSN--SLVKVTGQSGPVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKG--RHEVKTANS--SSFKEFSRYYEVPETLDPMSVSFHLLDGTLVVEAPLLR 1206
            ++ DW  +S+ S   D   + R LF LEP      F+  D    SV      I   +   + E     +T  GE                  DF KDAYE+  D  +HFKV  +   FK E++ + A  +K+ + A+K     +    +   ++I +PPSVD    Q   T D +L++EAP+ +   + I ++ + GL ++   + +R     N   L  VT + G          KKIHLE+ VD  + P D  V+ + N++++ G    E KT N+  S  +EF + +  PE +D       ++DG +VVEAPL +
Sbjct:   34 QVFDWAERSRQSLHDDIVNMHRNLFSLEP------FTAMDNAFESVMKEMSAIQPREFHPELE-----YTQPGE-----------------LDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIVTAEDG---------SKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEAPLFK 314
[Close]
BLAST of Small heat shock protein p36 vs. UniProt/SwissProt
Match: sp|P02513|HSP17_CAEEL (Heat shock protein Hsp-16.48/Hsp-16.49 OS=Caenorhabditis elegans OX=6239 GN=hsp-16.48 PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 3.440e-6
Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 1 
Query:  607 FKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTL 858
            F V+LD   FKPEDLK+     ++ I   +E  + +  S + FSK I +P  VD+   +   +N+G L +EAP K   + S+ +
Sbjct:   54 FSVQLDVSHFKPEDLKIELDGRELKIEGIQEKKSEHGYSKRSFSKMILLPEDVDLTSVKSAISNEGKLQIEAPKKTNSSRSIPI 137
[Close]
BLAST of Small heat shock protein p36 vs. UniProt/SwissProt
Match: sp|P34696|HSP11_CAEEL (Heat shock protein Hsp-16.1/Hsp-16.11 OS=Caenorhabditis elegans OX=6239 GN=hsp-16.1 PE=2 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 7.411e-6
Identity = 27/76 (35.53%), Postives = 41/76 (53.95%), Query Frame = 1 
Query:  607 FKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQ 834
            F + L+   FKPEDLK+      ++I   +E  T +  S K FS+ I +P  VD+     + + DG L +EAP K+
Sbjct:   50 FAINLNVSQFKPEDLKINLDGHTLSIQGEQELKTEHGYSKKSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKE 125
[Close]
BLAST of Small heat shock protein p36 vs. TrEMBL
Match: A0A183NBG5 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS25640 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 4.467e-71
Identity = 130/371 (35.04%), Postives = 208/371 (56.06%), Query Frame = 1 
Query:  118 HQEITIPVNRDSRNFEQRRKDMFSKLESSVSTHTTSENKTVATKSQFGHDDLWDLEIKDWVXXXXXXWDQDFAKIKRGLFDLEPIEGY--GDFSNSDTTHHSVASYTQKIVTSDGKTKTESSKSFHTTSGEPVQNLERQDYSQKCLTGTDFFKDAYEISDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTLKDG--LGVKAISDRH--STFSNSLVKVTGQSGPVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTAN----SSSFKEFSRYYEVPETLDPMSVSFHLLDGTLVVEAPL 1200
            HQ ++IPVNR+ R+FE++R+D+ + LE    TH       +A  ++      W   +  W++ S   WD+D  +++RG+F L P++ +  G + +     H +  + Q I    G     S+ S                        +DF KDAYEI +D  VHFKVR D  GF P+D+ V + +++VT++A+KET T   K  +EF + + +P S+D  + +C  T+DG+L+LEAP+K  +N S+TL +   +GV+  SD    +  ++  +   G  G   VDD   GK++H+E+PVD  Y+P D  V  + N++ + GRH  + ++    SSSF EFS+ Y +PET+DP+SVS  ++  TLV+EAPL
Sbjct:    7 HQAVSIPVNREQRSFERQRRDLLTGLEHGGGTH---RGNLIAPYTED-----WPSTVDSWINSSWRRWDEDMRRLRRGMFALLPLDNFTHGIWEDPFALMHQMDRHIQDIRERMGSMDVPSTGSV-----------------------SDFLKDAYEIGEDGKVHFKVRFDAQGFAPQDINVTSSENRVTVHAKKETTTDGGKCSREFCRMVQLPKSIDDSQLKCRMTDDGVLMLEAPVKVDQNQSLTLNESGQVGVRPKSDNQIKAVPASQALVAKGVHGLSYVDDGSGGKRLHVEVPVDPVYKPEDLCVNVDSNRVVVSGRHHKQKSDRYGKSSSFAEFSQSYAIPETVDPLSVSAQVVGNTLVLEAPL 346
[Close]
BLAST of Small heat shock protein p36 vs. TrEMBL
Match: A0A183W2C5 (Uncharacterized protein OS=Trichobilharzia regenti OX=157069 GN=TRE_LOCUS6880 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 5.624e-70
Identity = 137/379 (36.15%), Postives = 209/379 (55.15%), Query Frame = 1 
Query:  100 FSDRMYHQEITIPVNRDSRNFEQRRKDMFSKLESSVSTHTTSENKTVATKSQFGHDDLWDLEIKDWVXXXXXXWDQDFAKIKRGLFDLEPIEGYGDFSNSD--TTHHSVASYTQKIVTSDGKTKTESSKSFHTTSGEPVQNLERQDYSQKCLTGTDFFKDAYEISDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTLKDG--LGVKAISDR--HSTFSNSLVKVTGQSGPVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVK----TANSSSFKEFSRYYEVPETLDPMSVSFHLLDGTLVVEAPLLR 1206
             S +  HQ ++IPVNR+ R+FE++R+D+ + LE   S  + S N          HDD W   +  WV+ +   WD+D  +++RG+F L P++ +   S  D     H +  + Q I    G     S+ S                        +DF KDAYE+ +D  VHFKVR D  GF PED+ V + D+ +T++A+KETV    KS +EF + + +P S+D    +C  T+DG+L+LEAP+K  E  S+TL +   +GV+  SD    +  S+  + V G  GP V+DD   GK +H+E+PVD  Y+P D  V  +  ++ + GRH  +       +SSF EFS+ Y +PET+DP+SV+  L+  TLV+EAPL++
Sbjct:    1 MSGQQKHQIVSIPVNREPRSFEKQRRDLLTGLERGGSGSSHSGNSITPY-----HDD-WTGTVDHWVNSAWRRWDEDMRRLRRGMFALLPVDHF-PLSTHDPFALMHQMEHHIQDIRDRMGTLDVPSTAS-----------------------ASDFLKDAYEVGEDGKVHFKVRFDAKGFDPEDINVTSSDNCLTVHAKKETVKDGGKSIREFCRMVELPRSIDNNHLKCRLTDDGVLMLEAPVKVPEYQSLTLNESGQVGVRPKSDSQLQAVPSSKALVVKGTHGPTVLDDGSGGKLLHVEVPVDPVYKPEDLCVNVDSGRVVVSGRHHKEKHSARGGASSFAEFSQSYAIPETVDPLSVTSQLVGNTLVLEAPLMK 349
[Close]
BLAST of Small heat shock protein p36 vs. TrEMBL
Match: A0A5K4F3M7 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 2.193e-69
Identity = 127/371 (34.23%), Postives = 205/371 (55.26%), Query Frame = 1 
Query:  118 HQEITIPVNRDSRNFEQRRKDMFSKLESSVSTHTTSENKTVATKSQFGHDDLWDLEIKDWVXXXXXXWDQDFAKIKRGLFDLEPIEGY--GDFSNSDTTHHSVASYTQKIVTSDGKTKTESSKSFHTTSGEPVQNLERQDYSQKCLTGTDFFKDAYEISDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTLKDG--LGVKAISDRH--STFSNSLVKVTGQSGPVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTAN----SSSFKEFSRYYEVPETLDPMSVSFHLLDGTLVVEAPL 1200
            H  ++IPVNR+ R+FE++R+D+ + LE     H      ++A  ++      W   + +W+  S   WD D  +++RG+F L P++ +  G   N     H +  + Q I    G     S+ S                        +DF KDAYE+ +D  VHFKVR D  GF P+D+ V + +++VT++A+KET T  +K  +EF + + +P S+D  + +C  T+DG+L+LEAP+K  +N S+TL +   + V+  SD    +  ++  +   G  G   VDD   GK++H+E+PVD  Y+P D  V  + N++ + GRH  + ++    SSSF EFS+ Y +PET+DP+SVS  ++  TLV+EAPL
Sbjct:    7 HNAVSIPVNREQRSFEKQRRDLLTGLEHGGGAH---RGNSIAPYTED-----WPSTVDNWIDSSWKRWDDDMRRLRRGMFALLPLDTFTHGILENPFALMHQMDRHIQDIRERMGSMDVPSTGSV-----------------------SDFLKDAYEVGEDGKVHFKVRFDAQGFAPQDINVTSNENRVTVHAKKETTTDGRKCSREFCRMVQLPKSIDDSQLKCRMTDDGVLMLEAPVKVDQNQSLTLNESGQVAVRPKSDNQIKAVPASQALVAKGVHGLSYVDDGSGGKRLHVEVPVDPVYKPEDLCVNVDSNRVVVSGRHHKQKSDQHGRSSSFAEFSQSYAIPETVDPLSVSAQVVGNTLVLEAPL 346
[Close]
BLAST of Small heat shock protein p36 vs. TrEMBL
Match: A0A0R5RJC3 (Hsp20 (Fragment) OS=Schistosoma mansoni OX=6183 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.162e-68
Identity = 130/372 (34.95%), Postives = 205/372 (55.11%), Query Frame = 1 
Query:  118 HQEITIPVNRDSRNFEQRRKDMFSKLESSVSTHTTSENKTVATKSQFGHDDLWDLEIKDWVXXXXXXWDQDFAKIKRGLFDLEPIE--GYGDFSNSDTTHHSVASYTQKIVTSDGKTKTESSKSFHTTSGEPVQNLERQDYSQKCLTGTDFFKDAYEISDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTLKDG--LGVKAISD---RHSTFSNSLVKVTGQSGPVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTAN----SSSFKEFSRYYEVPETLDPMSVSFHLLDGTLVVEAPL 1200
            H  ++IPVNR+ R+FE++R+D+ + LE     H      ++A  ++      W   + +W+  S   WD D  +++RG+F L P++   +G   N     H +    Q I    G     S+ S +                       DF KDAYE+ +D  VHFKVR D  GF P+D+ V + +++VT++A+KET T  +K  +EF + + +P S+D  + +C  T+DG+L+LEAP+K  +N S+TL +   + V+  SD   +    S +LV   G  G   VDD   GK++H+E+PVD  Y+P D  V  + N++ + GRH  + ++    SSSF EFS+ Y +PET+DP+SVS  ++  TLV+EAPL
Sbjct:    7 HNAVSIPVNREQRSFEKQRRDLLTGLEHGGGAH---RGNSIAPYTED-----WPSTVDNWIDSSWKRWDDDMRRLRRGMFALLPLDTFSHGILENPFALMHQMDRQIQDIRERMGSLDVPSTGSVN-----------------------DFLKDAYEVGEDGKVHFKVRFDAQGFAPQDINVTSSENRVTVHAKKETTTDGRKCSREFCRMVQLPKSIDDSQLKCRMTDDGVLMLEAPVKVDQNQSLTLNESGQVAVRPKSDNQIKAVPASQALV-AKGVHGLSYVDDGSGGKRLHVEVPVDPVYKPEDLCVNVDSNRVVVSGRHHKQKSDQHGRSSSFAEFSQSYAIPETVDPLSVSAQVVGNTLVLEAPL 346
[Close]
BLAST of Small heat shock protein p36 vs. TrEMBL
Match: G4V8Y7 (Putative major egg antigen OS=Schistosoma mansoni OX=6183 GN=Smp_049300.3 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.252e-68
Identity = 127/371 (34.23%), Postives = 203/371 (54.72%), Query Frame = 1 
Query:  118 HQEITIPVNRDSRNFEQRRKDMFSKLESSVSTHTTSENKTVATKSQFGHDDLWDLEIKDWVXXXXXXWDQDFAKIKRGLFDLEPIEGY--GDFSNSDTTHHSVASYTQKIVTSDGKTKTESSKSFHTTSGEPVQNLERQDYSQKCLTGTDFFKDAYEISDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTLKDG--LGVKAISDRH--STFSNSLVKVTGQSGPVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTAN----SSSFKEFSRYYEVPETLDPMSVSFHLLDGTLVVEAPL 1200
            H  ++IPVNR+ R+FE++R+D+ + LE    TH  +          +  D  W   +  W++ S   WD++  +++RG+F L P++ +  G   N     H +  + Q I    G     S+ S                        +DF KDAYE+ +D  VHFKVR D  GF P+D+ V + +++VT++A+KET T   K  +EF + + +P S+D  + +C  T+DG+L+LEAP+K  +N S+TL +   + V+  SD    +  ++  +   G  G   VDD   GK++H+E+PVD  Y+P D  V  + N++ + GRH  + +     SSSF EFS+ Y +PET+DP+SVS  ++  TLV+EAPL
Sbjct:    7 HNAVSIPVNREQRSFERQRRDLLTGLEHGSGTHRGN------LIGPYTED--WPSTVDSWINSSWRRWDEEMRRLRRGMFALLPLDTFTHGILENPFALMHQMDRHIQDIRERMGSMDVPSTGSV-----------------------SDFLKDAYEVGEDGKVHFKVRFDAQGFAPQDINVTSSENRVTVHAKKETTTDGGKCSREFCRMVQLPKSIDDSQLKCRMTDDGVLMLEAPVKVDQNQSLTLNESGQVAVRPKSDNQIKAVPASQALVAKGVHGLSYVDDGSGGKRLHVEVPVDPVYKPEDLCVNVDSNRVVVSGRHHKQKSGQYGKSSSFAEFSQSYAIPETVDPLSVSAQVVGNTLVLEAPL 346
[Close]
BLAST of Small heat shock protein p36 vs. Ensembl Medaka
Match: hspb6 (heat shock protein family B (small) member 6 [Source:NCBI gene;Acc:101172926])

HSP 1 Score: 46.2098 bits (108), Expect = 8.413e-6
Identity = 24/83 (28.92%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:  970 GKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTANSSSF--KEFSRYYEVPETLDPMSVSFHLL-DGTLVVEAPLLRS 1209
            G  +H+++   K ++P D  V    + + ++G+HE K  N   F  ++F+R Y +P+ ++ M++   +  DG L++ APLL +
Sbjct:   59 GFTVHVDV---KHFKPEDLLVKVVGDFVEVQGKHEEKKENGPGFTTRQFNRRYRIPKGVNTMALESAVSPDGVLIISAPLLET 138
[Close]
BLAST of Small heat shock protein p36 vs. Planmine SMEST
Match: SMESG000033587.1 (SMESG000033587.1)

HSP 1 Score: 739.184 bits (1907), Expect = 0.000e+0
Identity = 366/367 (99.73%), Postives = 367/367 (100.00%), Query Frame = 1 
Query:  112 MYHQEITIPVNRDSRNFEQRRKDMFSKLESSVSTHTTSENKTVATKSQFGHDDLWDLEIKDWVXXXXXXWDQDFAKIKRGLFDLEPIEGYGDFSNSDTTHHSVASYTQKIVTSDGKTKTESSKSFHTTSGEPVQNLERQDYSQKCLTGTDFFKDAYEISDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTLKDGLGVKAISDRHSTFSNSLVKVTGQSGPVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTANSSSFKEFSRYYEVPETLDPMSVSFHLLDGTLVVEAPLLRSV 1212
            MYHQEITIPVNRDSRNFEQRRKDMFSKLESSVSTHTTSENKTVATKSQFGH+DLWDLEIKDWVSKSKSSWDQDFAKIKRGLFDLEPIEGYGDFSNSDTTHHSVASYTQKIVTSDGKTKTESSKSFHTTSGEPVQNLERQDYSQKCLTGTDFFKDAYEISDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTLKDGLGVKAISDRHSTFSNSLVKVTGQSGPVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTANSSSFKEFSRYYEVPETLDPMSVSFHLLDGTLVVEAPLLRSV
Sbjct:    1 MYHQEITIPVNRDSRNFEQRRKDMFSKLESSVSTHTTSENKTVATKSQFGHEDLWDLEIKDWVSKSKSSWDQDFAKIKRGLFDLEPIEGYGDFSNSDTTHHSVASYTQKIVTSDGKTKTESSKSFHTTSGEPVQNLERQDYSQKCLTGTDFFKDAYEISDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTLKDGLGVKAISDRHSTFSNSLVKVTGQSGPVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTANSSSFKEFSRYYEVPETLDPMSVSFHLLDGTLVVEAPLLRSV 367
[Close]
BLAST of Small heat shock protein p36 vs. Planmine SMEST
Match: SMESG000028601.1 (SMESG000028601.1)

HSP 1 Score: 250.366 bits (638), Expect = 1.120e-78
Identity = 149/390 (38.21%), Postives = 220/390 (56.41%), Query Frame = 1 
Query:  115 YHQEITIPVNRDSRNFEQRRKDMFSKLESSVSTHTTSENKTVATK------SQFGHD-------------DLWDLEIKDWVXXXXXXWDQDFAKIKRGLFDLEPIEGYGDFSNSDTTHHSVASYT----------QKIVT-SDGKTKTESSKSFHTTSGEPVQNLERQDYSQKCLTGTDFFKDAYEISDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTLKDGLGVKAISDRHSTFSNSLVKVTGQSGPVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTANSSSFKEFSRYYEVPETLDPMSVSFHLLDGTLVVEA 1194
            Y  EI+IPVN+D+R  E+RR+++FS LE   S    +EN  ++++      ++  HD             D WD ++ +W+  S+  WD +  ++KR +F LE      DF NS     SV  +           QKI + S+G  +   S     T   P  N +     +K ++  D + + YE   D  +HFK+R +   FKPED+KV    + + I      V  +  +  E  K+I +P S+D +KFQCH T DGILILEAP+K  +  S+  ++ +   A   +    +  +VK    SGPVV++D   GK++HLEI V+ DY P DFSV  EL +I +KGRHEVKT+NSSSFKEFS+YYE+PET+DPMS++F ++DGTL++EA
Sbjct:    4 YRTEISIPVNKDNRTLEERRQNVFSALEEKYSKPNVTENTRISSRDRPNLLNRINHDTFFDNEKFFKSDFDNWDSDVSEWIQNSRKRWDMEMDRVKRSMFSLESDRDEMDF-NSWDPFRSVKRFNEDRDSEFQRQQKIASCSEGIKRMRDS---MQTRFVPTVNEK-----EKNISSEDSYHNFYEFGQDGELHFKIRFEAKNFKPEDIKVTCTGNNLNI-----VVEKSDTNLVELHKSIVIPSSIDSQKFQCHITQDGILILEAPVKSPDYNSIVPQEKVFADACKTQTMDRNQVIVK-RNTSGPVVLNDE-KGKRLHLEIAVESDYVPGDFSVTAELKKISVKGRHEVKTSNSSSFKEFSQYYEIPETIDPMSINFSVIDGTLIIEA 377
[Close]
BLAST of Small heat shock protein p36 vs. Planmine SMEST
Match: SMESG000059879.1 (SMESG000059879.1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.546e-12
Identity = 54/206 (26.21%), Postives = 100/206 (48.54%), Query Frame = 1 
Query:  631 GFKPEDLKVIAQDS-----KVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQEN-----ISVTLKDGL-GVKAISDRHSTFSNSLVKVTGQSG-----PVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTANSSSFKEFSRYYEVPETLDPMSVSFHLLD-GTLVVEAP 1197
            G++P ++ +  + +     K+ ++A+      N++ F EF K I +P +VD +  +   T +G+L+L+AP K  E+     I +  +D   G+     R +   N ++   G          V D+        + I V KD++  D  +  + N+I+++ + E KT NSSS +       +PE ++   ++  LLD G LV+EAP
Sbjct:   39 GYQPNEIAIKEEKTEEGEVKIIVHAKH----VNEEDFSEFKKCIKIPKNVDHENLRSTMTKEGLLVLKAPYKISEDSVVKPIKINREDTWSGIWGELGRLNDQMNHMIDFGGALSHQPRVEFVPDENKESGTWRMTINVGKDFKSDDIKLRHQNNEIYLEAKKETKTDNSSSSRYIKEVLSLPEGIEEDKLNSKLLDNGQLVIEAP 240
[Close]
BLAST of Small heat shock protein p36 vs. Planmine SMEST
Match: SMESG000059868.1 (SMESG000059868.1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.546e-12
Identity = 54/206 (26.21%), Postives = 100/206 (48.54%), Query Frame = 1 
Query:  631 GFKPEDLKVIAQDS-----KVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQEN-----ISVTLKDGL-GVKAISDRHSTFSNSLVKVTGQSG-----PVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTANSSSFKEFSRYYEVPETLDPMSVSFHLLD-GTLVVEAP 1197
            G++P ++ +  + +     K+ ++A+      N++ F EF K I +P +VD +  +   T +G+L+L+AP K  E+     I +  +D   G+     R +   N ++   G          V D+        + I V KD++  D  +  + N+I+++ + E KT NSSS +       +PE ++   ++  LLD G LV+EAP
Sbjct:   39 GYQPNEIAIKEEKTEEGEVKIIVHAKH----VNEEDFSEFKKCIKIPKNVDHENLRSTMTKEGLLVLKAPYKISEDSVVKPIKINREDTWSGIWGELGRLNDQMNHMIDFGGALSHQPRVEFVPDENKESGTWRMTINVGKDFKSDDIKLRHQNNEIYLEAKKETKTDNSSSSRYIKEVLSLPEGIEEDKLNSKLLDNGQLVIEAP 240
[Close]
BLAST of Small heat shock protein p36 vs. Planmine SMEST
Match: SMESG000059853.1 (SMESG000059853.1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.742e-11
Identity = 53/206 (25.73%), Postives = 99/206 (48.06%), Query Frame = 1 
Query:  631 GFKPEDLKVIAQDS-----KVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQEN-----ISVTLKDGL-GVKAISDRHSTFSNSLVKVTGQSG-----PVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTANSSSFKEFSRYYEVPETLDPMSVSFHLLD-GTLVVEAP 1197
            G++P ++ +  + +     K+ ++A+      N++ F EF K I +P +VD +  +   T +G+L+L+AP K  E+     I +  +D   G+     R +   N ++   G          V D+        + I V KD++  D  +  +  +I+++ + E KT NSSS +       +PE ++   ++  LLD G LV+EAP
Sbjct:   39 GYQPNEIAIKEEKTEEGEVKIIVHAKH----INEEDFAEFKKCIKIPKNVDHENLRSTMTKEGLLVLKAPYKISEDSVVKPIKINREDTWSGIWGELGRLNDQMNHMIDFGGALSHQPRVEFVPDENKESGTWRMTINVGKDFKSDDIKLRHQNKEIYLEAKKETKTDNSSSSRYIKEVLSLPEGIEEDKLNSKLLDNGQLVIEAP 240
The following BLAST results are available for this feature:
BLAST of Small heat shock protein p36 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small heat shock protein p36 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
F08H9.46.299e-837.50pep chromosome:WBcel235:V:14463588:14463896:-1 gen... [more]
F08H9.47.833e-831.68pep chromosome:WBcel235:V:14463588:14464428:-1 gen... [more]
hsp-16.492.704e-734.52Heat shock protein Hsp-16.48/Hsp-16.49 [Source:Un... [more]
hsp-16.482.704e-734.52Heat shock protein Hsp-16.48/Hsp-16.49 [Source:Un... [more]
hsp-254.257e-726.32Heat Shock Protein [Source:UniProtKB/TrEMBL;Acc:Q... [more]
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BLAST of Small heat shock protein p36 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small heat shock protein p36 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small heat shock protein p36 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small heat shock protein p36 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small heat shock protein p36 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 4
Match NameE-valueIdentityDescription
sp|P12812|P40_SCHMA2.420e-6934.68Major egg antigen OS=Schistosoma mansoni OX=6183 P... [more]
sp|Q7YZT0|TSP36_TAESA3.816e-3128.93Small heat shock protein p36 OS=Taenia saginata OX... [more]
sp|P02513|HSP17_CAEEL3.440e-634.52Heat shock protein Hsp-16.48/Hsp-16.49 OS=Caenorha... [more]
sp|P34696|HSP11_CAEEL7.411e-635.53Heat shock protein Hsp-16.1/Hsp-16.11 OS=Caenorhab... [more]
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BLAST of Small heat shock protein p36 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A183NBG54.467e-7135.04Uncharacterized protein OS=Schistosoma margrebowie... [more]
A0A183W2C55.624e-7036.15Uncharacterized protein OS=Trichobilharzia regenti... [more]
A0A5K4F3M72.193e-6934.23Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
A0A0R5RJC31.162e-6834.95Hsp20 (Fragment) OS=Schistosoma mansoni OX=6183 PE... [more]
G4V8Y71.252e-6834.23Putative major egg antigen OS=Schistosoma mansoni ... [more]
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BLAST of Small heat shock protein p36 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small heat shock protein p36 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small heat shock protein p36 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small heat shock protein p36 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small heat shock protein p36 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
hspb68.413e-628.92heat shock protein family B (small) member 6 [Sour... [more]
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BLAST of Small heat shock protein p36 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000033587.10.000e+099.73SMESG000033587.1[more]
SMESG000028601.11.120e-7838.21SMESG000028601.1[more]
SMESG000059879.11.546e-1226.21SMESG000059879.1[more]
SMESG000059868.11.546e-1226.21SMESG000059868.1[more]
SMESG000059853.11.742e-1125.73SMESG000059853.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30024367 ID=SMED30024367|Name=Small heat shock protein p36|organism=Schmidtea mediterranea sexual|type=transcript|length=1408bp
AGTTTGTGCAGGCTTATGCCATCTATAAAAACAAATCGATTTCTAGATTT
GATTATTTTAATTATTTTGTGTAGTCACCTGTCTAGAGTATTTTAGATTT
TCTCAGACAGAATGTATCATCAAGAGATCACCATCCCTGTCAATAGGGAT
TCGAGAAACTTTGAACAGAGACGAAAGGATATGTTTAGTAAATTGGAAAG
CAGCGTTTCGACTCATACAACGTCTGAAAATAAAACTGTAGCAACAAAAA
GTCAATTTGGCCATGACGATTTGTGGGATTTGGAAATTAAAGATTGGGTT
TCTAAATCCAAGTCAAGTTGGGATCAAGATTTTGCGAAAATCAAAAGGGG
TCTCTTTGATTTAGAACCGATTGAAGGTTATGGAGATTTTTCAAATTCCG
ACACAACTCATCATTCGGTGGCCAGCTATACCCAGAAAATTGTTACAAGT
GATGGCAAAACTAAAACTGAAAGTTCAAAATCATTTCATACAACGTCTGG
AGAACCGGTTCAAAATCTCGAACGACAAGATTATAGTCAGAAATGTTTAA
CTGGTACTGATTTTTTCAAAGATGCTTACGAAATATCAGATGATAAACTG
GTTCATTTTAAAGTTAGACTTGACACATTAGGCTTTAAGCCCGAGGATCT
CAAAGTTATAGCACAAGATTCAAAAGTGACAATTAATGCACGGAAAGAAA
CTGTCACAGCCAATCAGAAAAGTTTCAAAGAGTTTAGTAAAACAATTACA
GTTCCTCCAAGCGTTGATATAAAAAAGTTTCAGTGCCATCAAACAAATGA
CGGCATTTTAATTCTTGAAGCACCAATTAAACAACAAGAAAACATTTCTG
TAACTCTAAAAGATGGTCTTGGAGTGAAAGCAATTTCAGACAGGCATTCT
ACTTTTAGTAACTCTTTGGTTAAGGTTACAGGTCAAAGTGGACCAGTAGT
AGTTGATGATGCAATATACGGGAAAAAGATCCATCTAGAAATTCCAGTTG
ATAAAGATTACGAGCCTTCAGATTTCAGTGTTTACACTGAATTAAATCAA
ATACACATTAAAGGTCGTCATGAAGTAAAGACTGCTAATTCTAGTTCATT
TAAGGAGTTTTCAAGATATTATGAAGTGCCAGAAACCCTTGATCCAATGT
CAGTTTCTTTTCATTTATTGGATGGAACCTTAGTTGTCGAAGCACCTCTC
TTGAGAAGTGTTTGAAATCTTAATATACTCTAATATTAGAAACTTGCATG
AACTTAATATAAAGTTTTGAGAAATTTTTATAAGATTGCATGATCCATTG
AACTCACTTTAATATCATTGGCTTATTTTATCATTTAATTATGATGTAAA
ATTTTTCTATTTGGTTGCATCGAAATAATTTTCAATTTAGAAATTTGGTT
AGGAGCTT
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protein sequence of SMED30024367-orf-1

>SMED30024367-orf-1 ID=SMED30024367-orf-1|Name=SMED30024367-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=368bp
MYHQEITIPVNRDSRNFEQRRKDMFSKLESSVSTHTTSENKTVATKSQFG
HDDLWDLEIKDWVSKSKSSWDQDFAKIKRGLFDLEPIEGYGDFSNSDTTH
HSVASYTQKIVTSDGKTKTESSKSFHTTSGEPVQNLERQDYSQKCLTGTD
FFKDAYEISDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTA
NQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTLK
DGLGVKAISDRHSTFSNSLVKVTGQSGPVVVDDAIYGKKIHLEIPVDKDY
EPSDFSVYTELNQIHIKGRHEVKTANSSSFKEFSRYYEVPETLDPMSVSF
HLLDGTLVVEAPLLRSV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0000428musculature system
PLANA:0000478pharynx musculature
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR002068A-crystallin/Hsp20_dom
Vocabulary: cellular component
TermDefinition
GO:0005737cytoplasm
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 150..240
e-value: 1.3E-58
score: 200.2
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 241..363
e-value: 1.3E-58
score: 200.2
IPR008978HSP20-like chaperoneSUPERFAMILYSSF49764HSP20-like chaperonescoord: 163..243
IPR008978HSP20-like chaperoneSUPERFAMILYSSF49764HSP20-like chaperonescoord: 299..363
IPR002068Alpha crystallin/Hsp20 domainPFAMPF00011HSP20coord: 299..363
e-value: 1.6E-6
score: 28.2
coord: 165..244
e-value: 2.3E-11
score: 43.7
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031SHSPcoord: 147..256
score: 12.62
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031SHSPcoord: 270..367
score: 11.803
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..133
NoneNo IPR availablePANTHERPTHR45640:SF8RE23625Pcoord: 62..245
NoneNo IPR availablePANTHERPTHR45640FAMILY NOT NAMEDcoord: 62..245
NoneNo IPR availablePANTHERPTHR45640FAMILY NOT NAMEDcoord: 280..364
NoneNo IPR availablePANTHERPTHR45640:SF8RE23625Pcoord: 280..364
NoneNo IPR availableCDDcd06526metazoan_ACDcoord: 158..238
e-value: 4.65405E-16
score: 70.6267
NoneNo IPR availableCDDcd06526metazoan_ACDcoord: 288..363
e-value: 6.05725E-11
score: 55.9891