MYND-type domain-containing protein

Overview
NameMYND-type domain-containing protein
Smed IDSMED30024338
Length (bp)1674
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of MYND-type domain-containing protein (SMED30024338) t-SNE clustered cells

Violin plots show distribution of expression levels for MYND-type domain-containing protein (SMED30024338) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of MYND-type domain-containing protein (SMED30024338) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for MYND-type domain-containing protein (SMED30024338) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30024338

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30024338h1SMcG0002763 SmedASXL_015646SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30024338h1SMcG0002763 SmedASXL_015646SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30024338h1SMcG0002486 Contig520uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30024338h1SMcG0002486 Contig520newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30024338h1SMcG0002763 Contig520uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30024338h1SMcG0002763 Contig520newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
nervous systemSMED30024338h1SMcG0002763 dd_Smed_v4_8776_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30024338h1SMcG0002763 dd_Smed_v4_8776_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30024338h1SMcG0002763 dd_Smed_v4_8776_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30024338h1SMcG0002763 dd_Smed_v4_8776_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30024338h1SMcG0002763 dd_Smed_v4_8776_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30024338h1SMcG0002763 dd_Smed_v4_8776_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of MYND-type domain-containing protein vs. Ensembl Human
Match: ZMYND15 (zinc finger MYND-type containing 15 [Source:HGNC Symbol;Acc:HGNC:20997])

HSP 1 Score: 110.923 bits (276), Expect = 7.727e-25
Identity = 93/396 (23.48%), Postives = 163/396 (41.16%), Query Frame = 1 
Query:   67 FTFV*IM--NCFTCGILLNSKSILTCENCVAINFCSVQCQKNANKKSLTHKSHIQDCDYYKVLMKDNNELSESPFKFDRSLITNSI-YEKFLIDKGIFNQGFWK-----FKCPFENNGYEIDVIMKSQNKIYDGYIL--PSETIILSLSPSILVKSLYD-WNDYFNWRDLNLESPIVALLQWPLTVYHMLNNILDFLNNSDFVNCHKSQVICIHFIGVEIELNVLPTFLELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSA---------------------------DVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIY 1140
            FTF  +    C  C        +  C  C A+ +C   C +   ++     SH   C      M+   EL+  PF +   + + +   E FL  +G+  +G+W         P  +     +    S  +  D Y L     T ++   P    + ++  W DY+ WR L+L+SPI  LL +PLTVY+++ +++    +   +N    Q + IH +    E +++  F EL  L P+   +L F+G+ +P    ++ +     +  +  S+   S ++   SS                            D+VIGFNSG ++  +W  ++  +   R+PA F++   +S       +             NPFRSPFR    D    +Y N+FI+
Sbjct:  303 FTFASLRARTCHVCHRHSFEAKLTPCPQCSAVLYCGEACLRADWQRCPDDVSHRFWCPRLAAFMERAGELATLPFTYTAEVTSETFNKEAFLASRGL-TRGYWTQLSMLIPGPGFSRHPRGNTPSLSLLRGGDPYQLLQGDGTALMPPVPPHPPRGVFGSWQDYYTWRGLSLDSPIAVLLTYPLTVYYVITHLVP--QSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDGLPPESDEQHFTLQRDSLEV--SVRPGSGISARPSSGTKEKGGRRDLQIKVSARPYHLFQGPKPDLVIGFNSGFALKDTWLRSLPRLQSLRVPAFFTESSEYSCVMDGQTMAVATGGGTSPPQPNPFRSPFRLRAADNCMSWYCNAFIF 693
[Close]
BLAST of MYND-type domain-containing protein vs. Ensembl Human
Match: ZMYND15 (zinc finger MYND-type containing 15 [Source:HGNC Symbol;Acc:HGNC:20997])

HSP 1 Score: 103.99 bits (258), Expect = 1.330e-22
Identity = 96/410 (23.41%), Postives = 166/410 (40.49%), Query Frame = 1 
Query:   67 FTFV*IM--NCFTCGILLNSKSILTCENCVAINFCSVQCQKNANKKSLTHKSHIQDCDYYKVLMKDNNELSESPFKFDRSLITNSI-YEKFLIDKGIFNQGFWK-----FKCPFENNGYEIDVIMKSQNKIYDGYIL--PSETIILSLSPSILVKSLYD-WNDYFNWRDLNLESPIVALLQWPLTVYHMLNNILDFLNNSDFVNCHKSQVICIHFIGVEIELNVLPTFLELQNLFPNYKFKLSFIGNHVP---DILH--------------------------KKRYEHGNVAFFIWKSLYHESRLTEE----FSSADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFS--------ADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIY 1140
            FTF  +    C  C        +  C  C A+ +C   C +   ++     SH   C      M+   EL+  PF +   + + +   E FL  +G+  +G+W         P  +     +    S  +  D Y L     T ++   P    + ++  W DY+ WR L+L+SPI  LL +PLTVY+++ +++    +   +N    Q + IH +    E +++  F EL  L P+   +L F+G+ +P   D  H                          K++    ++   +    YH  +  +      S + +  GFNSG ++  +W  ++  +   R+PA F++   +S        A A+ G     Q         NPFRSPFR    D    +Y N+FI+
Sbjct:  303 FTFASLRARTCHVCHRHSFEAKLTPCPQCSAVLYCGEACLRADWQRCPDDVSHRFWCPRLAAFMERAGELATLPFTYTAEVTSETFNKEAFLASRGL-TRGYWTQLSMLIPGPGFSRHPRGNTPSLSLLRGGDPYQLLQGDGTALMPPVPPHPPRGVFGSWQDYYTWRGLSLDSPIAVLLTYPLTVYYVITHLVP--QSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDGLPPESDEQHFTLQRDSLEVSVRPGSGISARPSSGTKEKGGRRDLQIKVSARPYHLFQGPKPDLVIASPSSLSAGFNSGFALKDTWLRSLPRLQSLRVPAFFTESSEYSCVMDGQTMAVATGGGTSPPQP--------NPFRSPFRLRAADNCMSWYCNAFIF 701
[Close]
BLAST of MYND-type domain-containing protein vs. Ensembl Human
Match: ZMYND15 (zinc finger MYND-type containing 15 [Source:HGNC Symbol;Acc:HGNC:20997])

HSP 1 Score: 103.99 bits (258), Expect = 1.330e-22
Identity = 96/410 (23.41%), Postives = 166/410 (40.49%), Query Frame = 1 
Query:   67 FTFV*IM--NCFTCGILLNSKSILTCENCVAINFCSVQCQKNANKKSLTHKSHIQDCDYYKVLMKDNNELSESPFKFDRSLITNSI-YEKFLIDKGIFNQGFWK-----FKCPFENNGYEIDVIMKSQNKIYDGYIL--PSETIILSLSPSILVKSLYD-WNDYFNWRDLNLESPIVALLQWPLTVYHMLNNILDFLNNSDFVNCHKSQVICIHFIGVEIELNVLPTFLELQNLFPNYKFKLSFIGNHVP---DILH--------------------------KKRYEHGNVAFFIWKSLYHESRLTEE----FSSADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFS--------ADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIY 1140
            FTF  +    C  C        +  C  C A+ +C   C +   ++     SH   C      M+   EL+  PF +   + + +   E FL  +G+  +G+W         P  +     +    S  +  D Y L     T ++   P    + ++  W DY+ WR L+L+SPI  LL +PLTVY+++ +++    +   +N    Q + IH +    E +++  F EL  L P+   +L F+G+ +P   D  H                          K++    ++   +    YH  +  +      S + +  GFNSG ++  +W  ++  +   R+PA F++   +S        A A+ G     Q         NPFRSPFR    D    +Y N+FI+
Sbjct:  303 FTFASLRARTCHVCHRHSFEAKLTPCPQCSAVLYCGEACLRADWQRCPDDVSHRFWCPRLAAFMERAGELATLPFTYTAEVTSETFNKEAFLASRGL-TRGYWTQLSMLIPGPGFSRHPRGNTPSLSLLRGGDPYQLLQGDGTALMPPVPPHPPRGVFGSWQDYYTWRGLSLDSPIAVLLTYPLTVYYVITHLVP--QSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDGLPPESDEQHFTLQRDSLEVSVRPGSGISARPSSGTKEKGGRRDLQIKVSARPYHLFQGPKPDLVIASPSSLSAGFNSGFALKDTWLRSLPRLQSLRVPAFFTESSEYSCVMDGQTMAVATGGGTSPPQP--------NPFRSPFRLRAADNCMSWYCNAFIF 701
[Close]
BLAST of MYND-type domain-containing protein vs. Ensembl Human
Match: ZMYND15 (zinc finger MYND-type containing 15 [Source:HGNC Symbol;Acc:HGNC:20997])

HSP 1 Score: 54.6842 bits (130), Expect = 3.959e-7
Identity = 46/196 (23.47%), Postives = 78/196 (39.80%), Query Frame = 1 
Query:  640 VNCHKSQVICIHFIGVEIELNVLPTFLELQNLFPNYKFKLSFIGNHVP---DILH--------------------------KKRYEHGNVAFFIWKSLYHESRLTEEFSSADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIY 1140
            +N    Q + IH +    E +++  F EL  L P+   +L F+G+ +P   D  H                          K++    ++   +    YH      +    D+VIGFNSG ++  +W  ++  +   R+PA F++   +S       +             NPFRSPFR    D    +Y N+FI+
Sbjct:  463 LNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDGLPPESDEQHFTLQRDSLEVSVRPGSGISARPSSGTKEKGGRRDLQIKVSARPYH----LFQGPKPDLVIGFNSGFALKDTWLRSLPRLQSLRVPAFFTESSEYSCVMDGQTMAVATGGGTSPPQPNPFRSPFRLRAADNCMSWYCNAFIF 654
[Close]
BLAST of MYND-type domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000005456.1 (zinc finger, MYND-type containing 15 [Source:NCBI gene;Acc:105945705])

HSP 1 Score: 65.0846 bits (157), Expect = 1.598e-10
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:  520 DYFNWRDLNLESPIVALLQWPLTVYHMLNNILDFLNNSDFVNCHKSQVICIHFIGVEIELNVLPTFLELQNLFPNYKFKLSFIGNHVP 783
            +Y+ WR+L+L++PI ALL +PLT+YH+++++L    +   +N  K Q + IH I    E   +  F EL  L P+   +L F+G  +P
Sbjct:  378 EYYEWRNLSLDNPIAALLSYPLTIYHVISSLLP--QHFPALNFQKKQTLRIHIIAGRREFERILLFWELAVLMPHPTIELVFVGEELP 463
[Close]
BLAST of MYND-type domain-containing protein vs. Ensembl Mouse
Match: Zmynd15 (zinc finger, MYND-type containing 15 [Source:MGI Symbol;Acc:MGI:3603821])

HSP 1 Score: 109.768 bits (273), Expect = 1.283e-24
Identity = 93/400 (23.25%), Postives = 165/400 (41.25%), Query Frame = 1 
Query:   67 FTFV*IM--NCFTCGILLNSKSILTCENCVAINFCSVQCQKNANKKSLTHKSHIQDCDYYKVLMKDNNELSESPFKFDRSLITNSI-YEKFLIDKGIFNQGFW-----------KFKCPFENNGYEIDVIMKSQNKIYDGYILPSETIILSLSPSILVKSLYD-WNDYFNWRDLNLESPIVALLQWPLTVYHMLNNILDFLNNSDFVNCHKSQVICIHFIGVEIELNVLPTFLELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSA---------------------------DVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIY 1140
            FTF  +    C  C        +  C  C A+ +C   C +   ++     SH   C      M+   EL+  PF +   + + +   E FL  +G+  +G+W             + P+ +      ++     ++  G   P+    + L P    +SL+  W DY+ WR L+L+SP+  LL +PLTVY+++ +++    +   +N    Q + IH +    E +++  F EL  L P+   +L F+G+ +P    ++ +        +  SL   S ++  F+S                            D+VIGFNSG  +  +W  ++  +   R+PA F++   +        +         S   NPFRSPFR    D    +Y N+FI+
Sbjct:  297 FTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHRFWCPRLSAFMERVGELASLPFTYTAEVTSETFNKEAFLASRGL-TRGYWTQLSMLIPGPGAPRYPWGSTSSLSCLLNGDPYQLLQGDG-PALMPPVPLEPP---RSLFGSWQDYYTWRGLSLDSPMAVLLTYPLTVYYVITHLVP--QSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDSLPPESDQQHFTMQRDGPEV--SLRPGSGVSARFNSGTKEKGGRRDLQIRVSARPYHLLQGPKPDLVIGFNSGFGLKDTWLSSLPRLQSLRVPAFFTESSEYGCVMDDQTMAVATGGGTSSPQPNPFRSPFRLRAADNCMPWYCNAFIF 687
[Close]
BLAST of MYND-type domain-containing protein vs. Ensembl Mouse
Match: Zmynd15 (zinc finger, MYND-type containing 15 [Source:MGI Symbol;Acc:MGI:3603821])

HSP 1 Score: 108.997 bits (271), Expect = 1.572e-24
Identity = 93/400 (23.25%), Postives = 165/400 (41.25%), Query Frame = 1 
Query:   67 FTFV*IM--NCFTCGILLNSKSILTCENCVAINFCSVQCQKNANKKSLTHKSHIQDCDYYKVLMKDNNELSESPFKFDRSLITNSI-YEKFLIDKGIFNQGFW-----------KFKCPFENNGYEIDVIMKSQNKIYDGYILPSETIILSLSPSILVKSLYD-WNDYFNWRDLNLESPIVALLQWPLTVYHMLNNILDFLNNSDFVNCHKSQVICIHFIGVEIELNVLPTFLELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSA---------------------------DVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIY 1140
            FTF  +    C  C        +  C  C A+ +C   C +   ++     SH   C      M+   EL+  PF +   + + +   E FL  +G+  +G+W             + P+ +      ++     ++  G   P+    + L P    +SL+  W DY+ WR L+L+SP+  LL +PLTVY+++ +++    +   +N    Q + IH +    E +++  F EL  L P+   +L F+G+ +P    ++ +        +  SL   S ++  F+S                            D+VIGFNSG  +  +W  ++  +   R+PA F++   +        +         S   NPFRSPFR    D    +Y N+FI+
Sbjct:  167 FTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHRFWCPRLSAFMERVGELASLPFTYTAEVTSETFNKEAFLASRGL-TRGYWTQLSMLIPGPGAPRYPWGSTSSLSCLLNGDPYQLLQGDG-PALMPPVPLEPP---RSLFGSWQDYYTWRGLSLDSPMAVLLTYPLTVYYVITHLVP--QSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDSLPPESDQQHFTMQRDGPEV--SLRPGSGVSARFNSGTKEKGGRRDLQIRVSARPYHLLQGPKPDLVIGFNSGFGLKDTWLSSLPRLQSLRVPAFFTESSEYGCVMDDQTMAVATGGGTSSPQPNPFRSPFRLRAADNCMPWYCNAFIF 557
[Close]
BLAST of MYND-type domain-containing protein vs. Ensembl Mouse
Match: Zmynd15 (zinc finger, MYND-type containing 15 [Source:MGI Symbol;Acc:MGI:3603821])

HSP 1 Score: 56.6102 bits (135), Expect = 6.982e-8
Identity = 46/194 (23.71%), Postives = 78/194 (40.21%), Query Frame = 1 
Query:  640 VNCHKSQVICIHFIGVEIELNVLPTFLELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSA---------------------------DVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIY 1140
            +N    Q + IH +    E +++  F EL  L P+   +L F+G+ +P    ++ +        +  SL   S ++  F+S                            D+VIGFNSG  +  +W  ++  +   R+PA F++   +        +         S   NPFRSPFR    D    +Y N+FI+
Sbjct:  456 LNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDSLPPESDQQHFTMQRDGPEV--SLRPGSGVSARFNSGTKEKGGRRDLQIRVSARPYHLLQGPKPDLVIGFNSGFGLKDTWLSSLPRLQSLRVPAFFTESSEYGCVMDDQTMAVATGGGTSSPQPNPFRSPFRLRAADNCMPWYCNAFIF 647
[Close]
BLAST of MYND-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9H091|ZMY15_HUMAN (Zinc finger MYND domain-containing protein 15 OS=Homo sapiens OX=9606 GN=ZMYND15 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.711e-24
Identity = 93/396 (23.48%), Postives = 163/396 (41.16%), Query Frame = 1 
Query:   67 FTFV*IM--NCFTCGILLNSKSILTCENCVAINFCSVQCQKNANKKSLTHKSHIQDCDYYKVLMKDNNELSESPFKFDRSLITNSI-YEKFLIDKGIFNQGFWK-----FKCPFENNGYEIDVIMKSQNKIYDGYIL--PSETIILSLSPSILVKSLYD-WNDYFNWRDLNLESPIVALLQWPLTVYHMLNNILDFLNNSDFVNCHKSQVICIHFIGVEIELNVLPTFLELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSA---------------------------DVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIY 1140
            FTF  +    C  C        +  C  C A+ +C   C +   ++     SH   C      M+   EL+  PF +   + + +   E FL  +G+  +G+W         P  +     +    S  +  D Y L     T ++   P    + ++  W DY+ WR L+L+SPI  LL +PLTVY+++ +++    +   +N    Q + IH +    E +++  F EL  L P+   +L F+G+ +P    ++ +     +  +  S+   S ++   SS                            D+VIGFNSG ++  +W  ++  +   R+PA F++   +S       +             NPFRSPFR    D    +Y N+FI+
Sbjct:  303 FTFASLRARTCHVCHRHSFEAKLTPCPQCSAVLYCGEACLRADWQRCPDDVSHRFWCPRLAAFMERAGELATLPFTYTAEVTSETFNKEAFLASRGL-TRGYWTQLSMLIPGPGFSRHPRGNTPSLSLLRGGDPYQLLQGDGTALMPPVPPHPPRGVFGSWQDYYTWRGLSLDSPIAVLLTYPLTVYYVITHLVP--QSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDGLPPESDEQHFTLQRDSLEV--SVRPGSGISARPSSGTKEKGGRRDLQIKVSARPYHLFQGPKPDLVIGFNSGFALKDTWLRSLPRLQSLRVPAFFTESSEYSCVMDGQTMAVATGGGTSPPQPNPFRSPFRLRAADNCMSWYCNAFIF 693
[Close]
BLAST of MYND-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8C0R7|ZMY15_MOUSE (Zinc finger MYND domain-containing protein 15 OS=Mus musculus OX=10090 GN=Zmynd15 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.974e-24
Identity = 93/400 (23.25%), Postives = 165/400 (41.25%), Query Frame = 1 
Query:   67 FTFV*IM--NCFTCGILLNSKSILTCENCVAINFCSVQCQKNANKKSLTHKSHIQDCDYYKVLMKDNNELSESPFKFDRSLITNSI-YEKFLIDKGIFNQGFW-----------KFKCPFENNGYEIDVIMKSQNKIYDGYILPSETIILSLSPSILVKSLYD-WNDYFNWRDLNLESPIVALLQWPLTVYHMLNNILDFLNNSDFVNCHKSQVICIHFIGVEIELNVLPTFLELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSA---------------------------DVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIY 1140
            FTF  +    C  C        +  C  C A+ +C   C +   ++     SH   C      M+   EL+  PF +   + + +   E FL  +G+  +G+W             + P+ +      ++     ++  G   P+    + L P    +SL+  W DY+ WR L+L+SP+  LL +PLTVY+++ +++    +   +N    Q + IH +    E +++  F EL  L P+   +L F+G+ +P    ++ +        +  SL   S ++  F+S                            D+VIGFNSG  +  +W  ++  +   R+PA F++   +        +         S   NPFRSPFR    D    +Y N+FI+
Sbjct:  297 FTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHRFWCPRLSAFMERVGELASLPFTYTAEVTSETFNKEAFLASRGL-TRGYWTQLSMLIPGPGAPRYPWGSTSSLSCLLNGDPYQLLQGDG-PALMPPVPLEPP---RSLFGSWQDYYTWRGLSLDSPMAVLLTYPLTVYYVITHLVP--QSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDSLPPESDQQHFTMQRDGPEV--SLRPGSGVSARFNSGTKEKGGRRDLQIRVSARPYHLLQGPKPDLVIGFNSGFGLKDTWLSSLPRLQSLRVPAFFTESSEYGCVMDDQTMAVATGGGTSSPQPNPFRSPFRLRAADNCMPWYCNAFIF 687
[Close]
BLAST of MYND-type domain-containing protein vs. TrEMBL
Match: V4B4J9 (MYND-type domain-containing protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_228004 PE=4 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.773e-49
Identity = 116/370 (31.35%), Postives = 183/370 (49.46%), Query Frame = 1 
Query:   82 IMNCFTCGILLNSKSILTCENCVAINFCSVQCQKNANKKS--LTHKSHIQDCDYYKVLMKDNNELSESPFKFDRSLITNSI----YEKFLIDKGIFNQGFWKFKCPFE--NNGYEIDVIMKSQNKIYDGYILPSETIILSLSPSILVKS----LYDWNDYFNWRDLNLESPIVALLQWPLTVYHMLNNILDFLNNSDFVNCHKSQVICIHFIGVEIELNVLPTFLELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISIS-----INPFRSPFREEGPDINFWFYSNSFIY 1140
            +  C +C    +      C  C    +CS +CQ    K++  L    H + C   K  +   +EL+  PF F +           Y+KFL D+G++NQG W+ +CP    + G  I   + S +   + YILPSET ILS  P   + S    L DW  Y++WR   L+SPI  LL  P+T+YH++        N  +      + + IH +GVE E+ +L  F E   L PN +F++   G  + D ++     +GN++  I K LYH+           + IGFN+G+S + +W  T+  +    +P+ F+DYC++S + S      R+ L  +SI+     INPFR+P R+   + N  +YSN FI+
Sbjct:  166 VRECSSCRRRGSPSLFKECAACTGSVYCSKECQTRDWKRTDELKEHGHKKWCKLIKSYIAKTDELATFPFTFTKETTDKEFHQYRYKKFLEDRGVYNQGLWRRECPLSLSDTGPCIFGQLSSDD---NPYILPSETAILSCKPDKSIPSIKEPLRDWQTYYDWRGFKLDSPIAILLHIPITLYHVVIFYFAQQYNDQWRQIESDEKMIIHILGVEKEVEMLMVFQEFGYLLPNIEFEIHMFGVELHDTVNNTNKNYGNISITIHKQLYHDYN----GDKPHLAIGFNAGISAYLNWGDTIIKLKNENIPSYFTDYCQYSCECS------RRALSSVSITAEPTLINPFRNPVRKICTENNMPWYSNGFIF 522
[Close]
BLAST of MYND-type domain-containing protein vs. TrEMBL
Match: A0A0X3P1G0 (Zinc finger MYND domain-containing protein 15 OS=Schistocephalus solidus OX=70667 GN=ZMY15 PE=4 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.813e-47
Identity = 127/417 (30.46%), Postives = 199/417 (47.72%), Query Frame = 1 
Query:   88 NCFTCGILLNSKSILTCENCVAINFCSVQCQKNANKKSL-THKSHIQDCDYYKVLMKDNNELSESPFKFDRSLITNSIYE----KFLIDKGIFNQGFWKFKCPFENNG----------------YEID--------VIMKSQNKIYDGYILPSETIILSLSPSI----------LVKSLYDWNDYFNWRDLNLESPIVALLQWPLTVYHMLNNILDFLNNSDFVNCHKSQVICIHFIGVEIELNVLPTFLELQNLF-PNYK-FKLSFIGNHVPDILHKKR-YEHGNVAFFIWKSLYHE-------SRLTEEFSSADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKL----------------DWI-SISINPFRSPFREEGPDINFWFYSNSFIY 1140
             C  C  +L  K+ LTCE+C A+ +CS  C+      +L +  +H + C    V M  +N ++E PF F       +       +FL   GI+N G WK+      +G                Y +D        + ++ +    + Y  PSE I+LS  P I          L   L DW  ++ WR L L SP+  LL WPLT+Y +LNN+L  +    +++    + + IH IGVE E+++LP F EL +L  P+ K  +L FIG  +  + H    Y    ++  +W+ LYHE        R TE   +ADV+IGFN+GL+ + +W  TVD++ +   P  F+D C++S    L ++R  +KL                D++ S+ +NPFR P R       + + SN+FI+
Sbjct:   10 QCSYCARVLPKKNCLTCESCHALVYCSQYCRTQDFSNTLISDHAHSKWCSLLSVFMNRSNCVTEFPFTFSDQTTCETFSSGKLFQFLRLYGIYNLGLWKYLFHTSGSGPGEELALWDGLISTDPYRLDYSSTYPNPLAVREEVAYLNAYASPSEAILLSAVPPIQPSVPGRPRLLSVDLTDWASFYAWRGLPLTSPVAFLLHWPLTIYFILNNLLRHIGEDAYLSVIYQESLTIHLIGVEREVDLLPVFKELDHLISPDIKRVQLIFIGPTISPVAHSTLWYLSARMSAGLWRGLYHEFIADDLRRRWTE---TADVIIGFNAGLATYGTWPETVDVLNKLGKPLFFTDSCQYSC---LCSLRVLEKLKLRSTTGEVGPKLTDFDFLSSLVLNPFRCPLRIPSMSTKWPWLSNAFIF 420
[Close]
BLAST of MYND-type domain-containing protein vs. TrEMBL
Match: A0A1S3K3A4 (zinc finger MYND domain-containing protein 15-like OS=Lingula unguis OX=7574 GN=LOC106178460 PE=4 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 5.769e-46
Identity = 110/373 (29.49%), Postives = 182/373 (48.79%), Query Frame = 1 
Query:   82 IMNCFTCGILLNSKSILTCENCVAINFCSVQCQ----KNANKKSLTHKSHIQDCDYYKVLMKDNNELSESPFKFDRSLITNSI----YEKFLIDKGIFNQGFWKFKCPFENNGYEIDVIMKSQNKIYDGYILPSETIILSLSPS---ILVKSLYDWNDYFNWRDLNLESPIVALLQWPLTVYHMLNNILDFLNNSDFVNCHK--SQVICIHFIGVEIELNVLPTFLELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIYGFLPIRQ 1161
            +  C +C +      +  C  C A+ +CS +CQ    K+ +   L+HK     C      MK ++EL   PF +     + +     Y++FL   G+  QG W  +  F  + Y+       Q    + Y+LP E+ IL   P+     +  L DW  Y++WR   L+SPI  LLQ+PLT+Y++L   L      D+ +  +  +  + IH +G E E +++P F EL  L P  +  +  IG  +   +HKK+ +H NV   I K LY +          D++IGFN+G+S + +W+P    I +   PA F+DYC++S + +  A+   +       ++NPFRSP      + +  +YSN+F++   P  Q
Sbjct:  128 VRKCASCMLQRPRSQLKKCTGCKAMLYCSKECQICDWKSLHGDYLSHKLW---CKKIAEFMKKSDELKNLPFTYMSETSSKNFSRYRYKEFLQKMGVLEQGMWNVE--FLASKYDYPTYGNLQYGD-NPYVLPVESSILEEQPTDNAQKISPLTDWKSYYDWRGFRLDSPIAILLQYPLTLYYILTTCLP----KDYPSAKQIDAAQLTIHVVGAEKEASIIPVFWELGALLPEIQLTIILIGPEICKKVHKKQMQHQNVNVTIHKGLYEKYPGVR----PDLIIGFNAGISAYMTWKPGTTKIMESGAPAYFTDYCQYSCECTKVALEESRIASVSDFTVNPFRSPVLRLCEEHDMPWYSNAFLFHLTPWDQ 486
[Close]
BLAST of MYND-type domain-containing protein vs. TrEMBL
Match: K1QFB6 (Zinc finger MYND domain-containing protein 15 OS=Crassostrea gigas OX=29159 GN=CGI_10007794 PE=4 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.095e-42
Identity = 110/356 (30.90%), Postives = 172/356 (48.31%), Query Frame = 1 
Query:   88 NCFTCGILLNSKSILTCENCVAINFCSVQCQKNANKKSLTHKSHIQDCDYYKVLMKDNNELSESPFKFDRSLIT----NSIYEKFLIDKGIFNQGFWKFKCPFENNGYEIDVIMKSQNKIYDGYILPSETIILSLSPSILVKS-LYDWNDYFNWRDLNLESPIVALLQWPLTVYHMLNNILDFLNNSDFVNCHKSQVICIHFIGVEIELNVLPTFLELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIY 1140
             C  C I    + +  C  C A+ +CS +C+      S    SH   C  +   M+D  +LSE PF+F     +     S Y  FL DKG                   ID        + + Y+LP E+ +L    S+  +S + DW  Y+  R ++L SPI  LLQWPLTV+ ++ +++   N SDF        I I  IGVE E+ ++P F EL NL  +    +   G H+   + +K +   NV   +   LYH  + +    +  +VIGFN+GL+ +SSW PT+  +   ++PA F+DYCR S + S   ++    ++     +NPFRSP R    D +  ++SN++I+
Sbjct:   54 ECHFCHIRAEQRLLTYCPMCQAVLYCSSECRNEDTHGSSGLTSHGFWCSKFLSYMEDTAKLSELPFEFSSDTCSPDFDASKYRSFLKDKG-----------------KHID--------LDNPYVLPVESCMLDDPLSVDSESSIMDWGSYYESRGIDLSSPIAILLQWPLTVFFIIKHLM---NGSDF-----DHHINIDIIGVEKEVELIPVFKELGNLLGDRVIDIQMFGRHLHHCVREKVWTISNVTITVHNQLYH--KHSPHHRAPHLVIGFNAGLAAYSSWIPTIKKLKDMKVPAFFTDYCRSSIELSSLMLQDHCDINVSDPVLNPFRSPIRTTSSDHDLPWFSNAYIF 374
[Close]
BLAST of MYND-type domain-containing protein vs. TrEMBL
Match: A0A267FLB3 (MYND-type domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig014730g1 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.335e-42
Identity = 115/416 (27.64%), Postives = 193/416 (46.39%), Query Frame = 1 
Query:   61 NRFTFV*IMNCFTCGILLNSKSILTCENCVAINFCSVQCQK-NANKKSLTHKSHIQDCDYYKVLMKDNNELSESPFKFDRSLITNSIYE-----KFLIDKGIFNQGFWKFKC---------PFENNGYEIDV----IMKSQNKIYDGYILPSETIILSLSPSILVKS-----LYDWNDYFNWRDLNLESPIVALLQWPLTVYHMLNNILDF----------LNNSDFVNCHKSQVICIHFIGVEIELNVLPTFLELQNLFPNYKFKLSFIGNHVPDILHKKRYEH--GNVAFFIWKSLYHE--------------SRLTEEFSS----ADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISIS---INPFRSPFREEGPDINFWFYSNSFI 1137
            N F+      C TC  LLN  S L C  C  + +CS  CQ+ +AN+      +H   C   ++  +    L+E PF F  S+ T   ++     +FL+++G+  +G W+ +C         PF+++  + D+    +        D + LP E  +L  +PS +  +     +  W+DY+  R L  +SP+  L+QWPLT+YH+L   L                D   C   +++ +H IGVE E+ ++P   EL  L P + F+L  +G  V   +HK  +    G     +++ LYH+              +   +E SS     D+++ FN+G +   SW  T++ + +  +    +DYC FS +  L A+    KL   +++   INPFRSP R     ++   YSN+FI
Sbjct:    4 NPFSSAFFAQCSTCAGLLNRSSALQCSQCRCVYYCSEACQRRHANQPDNPGLAHKAWCARLRLFRQRAPALAELPFGFA-SVTTADTFDSQCLSRFLLERGLLGRGMWRRECYAWLGVHPHPFDDDDNDADIGGVPLPGDLAPDPDPFALPDEAAVLVEAPSTVSATEPPPRISSWSDYYQMRGLPADSPVCVLMQWPLTLYHLLFERLPVDAPDAYKRLTATVGDNRPCQLRRIV-VHLIGVEKEVELIPALCELAKLAPGFSFRLVLVGKEVSPSVHKSVHTELDGRFRVSVYRGLYHQVAAGLLNQKHQDGITDSGDEESSCPARPDLIVAFNAGFAASISWPATLEFLKKLAIRTYVTDYCEFSME--LSAVMC-DKLGIGTLTPQRINPFRSPIRVPNEQLDLPSYSNAFI 414
[Close]
BLAST of MYND-type domain-containing protein vs. Planmine SMEST
Match: SMESG000060297.1 (SMESG000060297.1)

HSP 1 Score: 303.908 bits (777), Expect = 2.051e-101
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 
Query:  721 ELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIYGFLPIRQ 1161
            ELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIYGFLPIRQ
Sbjct:   24 ELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIYGFLPIRQ 170
[Close]
BLAST of MYND-type domain-containing protein vs. Planmine SMEST
Match: SMESG000049377.1 (SMESG000049377.1)

HSP 1 Score: 303.523 bits (776), Expect = 3.266e-101
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 1 
Query:  721 ELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSFIYGFLPIRQ 1161
            ELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPD+NFWFYSNSFIYGFLPIRQ
Sbjct:   24 ELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFIWKSLYHESRLTEEFSSADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFSDYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDVNFWFYSNSFIYGFLPIRQ 170
The following BLAST results are available for this feature:
BLAST of MYND-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4
Match NameE-valueIdentityDescription
ZMYND157.727e-2523.48zinc finger MYND-type containing 15 [Source:HGNC S... [more]
ZMYND151.330e-2223.41zinc finger MYND-type containing 15 [Source:HGNC S... [more]
ZMYND151.330e-2223.41zinc finger MYND-type containing 15 [Source:HGNC S... [more]
ZMYND153.959e-723.47zinc finger MYND-type containing 15 [Source:HGNC S... [more]
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BLAST of MYND-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MYND-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MYND-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MYND-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSXETT00000005456.11.598e-1036.36zinc finger, MYND-type containing 15 [Source:NCBI ... [more]
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BLAST of MYND-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Zmynd151.283e-2423.25zinc finger, MYND-type containing 15 [Source:MGI S... [more]
Zmynd151.572e-2423.25zinc finger, MYND-type containing 15 [Source:MGI S... [more]
Zmynd156.982e-823.71zinc finger, MYND-type containing 15 [Source:MGI S... [more]
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BLAST of MYND-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 2
Match NameE-valueIdentityDescription
sp|Q9H091|ZMY15_HUMAN3.711e-2423.48Zinc finger MYND domain-containing protein 15 OS=H... [more]
sp|Q8C0R7|ZMY15_MOUSE8.974e-2423.25Zinc finger MYND domain-containing protein 15 OS=M... [more]
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BLAST of MYND-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
V4B4J99.773e-4931.35MYND-type domain-containing protein OS=Lottia giga... [more]
A0A0X3P1G05.813e-4730.46Zinc finger MYND domain-containing protein 15 OS=S... [more]
A0A1S3K3A45.769e-4629.49zinc finger MYND domain-containing protein 15-like... [more]
K1QFB61.095e-4230.90Zinc finger MYND domain-containing protein 15 OS=C... [more]
A0A267FLB34.335e-4227.64MYND-type domain-containing protein OS=Macrostomum... [more]
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BLAST of MYND-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MYND-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MYND-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MYND-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MYND-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of MYND-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000060297.12.051e-101100.00SMESG000060297.1[more]
SMESG000049377.13.266e-10199.32SMESG000049377.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30024338 ID=SMED30024338|Name=MYND-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1674bp
GTCAATCATGACGAAGTCACTGATTTTTAATTGTTTCGTTTTATTCAAAC
TAACAGAATAAACAGATTTACATTTGTTTGAATAATGAACTGTTTCACTT
GCGGCATACTTTTAAATTCGAAAAGTATTTTAACATGTGAAAACTGTGTA
GCAATAAATTTTTGTTCGGTACAATGTCAGAAAAATGCTAATAAAAAGTC
ACTCACTCATAAGAGTCACATACAAGATTGTGACTACTACAAAGTTTTAA
TGAAAGATAATAACGAACTTTCGGAGTCTCCATTTAAATTTGATAGAAGT
TTAATAACAAATTCTATTTACGAAAAGTTTCTAATCGATAAGGGAATATT
TAATCAAGGATTTTGGAAATTTAAATGTCCTTTTGAAAATAATGGTTATG
AAATAGATGTAATAATGAAATCTCAGAATAAAATATACGATGGATATATC
TTGCCTTCAGAAACCATAATTCTTTCTCTTTCACCATCAATATTAGTTAA
ATCACTATATGATTGGAATGATTATTTTAATTGGCGAGATCTCAATTTGG
AATCACCGATTGTAGCTCTTCTTCAGTGGCCATTGACAGTATATCACATG
TTAAATAATATTTTAGATTTCCTTAATAATTCAGATTTCGTCAATTGCCA
TAAATCTCAGGTGATTTGTATTCATTTCATTGGGGTAGAAATTGAATTGA
ATGTTTTACCGACATTTCTGGAATTGCAAAATTTATTTCCAAATTACAAG
TTCAAACTGAGTTTTATTGGAAATCATGTTCCGGATATTTTGCACAAGAA
ACGTTACGAACACGGTAACGTTGCGTTTTTCATTTGGAAATCCCTCTATC
ACGAATCGCGGCTGACTGAGGAGTTCTCATCGGCCGATGTTGTAATCGGA
TTCAATTCTGGTTTATCTGTGTTTTCCTCTTGGCAGCCGACAGTTGATTT
GATCGCGCAACGGAGGCTGCCTGCGTTATTCAGTGATTATTGTCGATTCA
GTGCCGATGCCAGCCTGGGCGCGATTCGGGCCAGGCAAAAACTGGATTGG
ATCTCGATTTCCATCAATCCATTCAGGTCACCATTCAGAGAGGAGGGGCC
CGATATCAATTTCTGGTTTTATAGCAATTCCTTCATTTATGGCTTTTTGC
CGATCCGTCAATAAACTTTGGTCTTTTTTTTAAACTAATTTTCGAAATAT
TGATTGATTTTTGCCGAATTTGTTTTAATGATAATCTGTTACCGCCGAGC
CTCCCGCACCGTTGCCATAGCAACCGACATGCTAGCAAATCCACCAACAT
TGGTAATTTCATGAATGGTAAAATTGAGTTAGTGGAGTAACACTTCTAGC
CTTGGTAAGAAATACACTCGGTTATTTTCCCTTCTGCTGTATTATTATAG
CTGATCTGGTTCTCCCATTGTTGATTTCACTTTTATGATGGCTGATAATG
GAAGCAAATTATTAATGGCTGTTGTAATACCGATCTATTAAAGCTGTAAA
TTGTTAAGCTAAATTAGACAATCATCCTTTCCCAAATGTGGTTTCCTAGC
TCTAAATAAAATCTAATTATCAACTATTGCGCCTCAATCTGACAATTCCG
TGGAATTATCAACAAATTTTAGATTAATTTAATTGGATTGTATTTTGTAA
TACTGTGAAAACCCGTAAAATTTT
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protein sequence of SMED30024338-orf-1

>SMED30024338-orf-1 ID=SMED30024338-orf-1|Name=SMED30024338-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=360bp
MNCFTCGILLNSKSILTCENCVAINFCSVQCQKNANKKSLTHKSHIQDCD
YYKVLMKDNNELSESPFKFDRSLITNSIYEKFLIDKGIFNQGFWKFKCPF
ENNGYEIDVIMKSQNKIYDGYILPSETIILSLSPSILVKSLYDWNDYFNW
RDLNLESPIVALLQWPLTVYHMLNNILDFLNNSDFVNCHKSQVICIHFIG
VEIELNVLPTFLELQNLFPNYKFKLSFIGNHVPDILHKKRYEHGNVAFFI
WKSLYHESRLTEEFSSADVVIGFNSGLSVFSSWQPTVDLIAQRRLPALFS
DYCRFSADASLGAIRARQKLDWISISINPFRSPFREEGPDINFWFYSNSF
IYGFLPIRQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: molecular function
TermDefinition
GO:0046872metal ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47570FAMILY NOT NAMEDcoord: 243..353
coord: 14..240