SMED30024220

Overview
NameSMED30024220
Smed IDSMED30024220
Length (bp)978
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30024220 (SMED30024220) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30024220 (SMED30024220) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30024220

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 27

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30024220h1SMcG0009890 SmedASXL_017257SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
head regionSMED30024220h1SMcG0009890 SmedASXL_004369SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
head regionSMED30024220h1SMcG0009890 SmedASXL_017252SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30024220h1SMcG0009890 dd_Smed_v4_13603_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30024220h1SMcG0009890 dd_Smed_v4_13603_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30024220h1SMcG0009890 dd_Smed_v4_13603_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30024220h1SMcG0009890 dd_Smed_v4_11640_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30024220h1SMcG0009890 dd_Smed_v4_11640_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30024220h1SMcG0009890 dd_Smed_v4_9830_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30024220h1SMcG0009890 dd_Smed_v4_9830_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30024220h1SMcG0009890 dd_Smed_v4_9830_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30024220h1SMcG0009890 dd_Smed_v4_9830_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30024220h1SMcG0009890 dd_Smed_v4_9830_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30024220h1SMcG0009890 dd_Smed_v4_9830_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30024220h1SMcG0009890 dd_Smed_v4_16650_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30024220h1SMcG0009890 dd_Smed_v4_16650_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30024220h1SMcG0009890 dd_Smed_v4_16650_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30024220h1SMcG0009889 Contig19558uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30024220h1SMcG0009889 Contig19558newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30024220h1SMcG0009890 Contig53784uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30024220h1SMcG0009890 Contig53784newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30024220h1SMcG0009890 Contig19558uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30024220h1SMcG0009890 Contig19558newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30024220h1SMcG0009890 dd_Smed_v6_9830_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
neoblastSMED30024220h1SMcG0009890 dd_Smed_v6_16650_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
reproductive organSMED30024220h1SMcG0009890 Contig53784uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30024220h1SMcG0009890 Contig53784newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30024220 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000055:312246..315452 -4824
v31.000055:314601..315820 -2090
Homology
[Close]
BLAST of SMED30024220 vs. Planmine SMEST
Match: SMESG000064314.1 (SMESG000064314.1)

HSP 1 Score: 393.275 bits (1009), Expect = 1.946e-124
Identity = 236/310 (76.13%), Postives = 263/310 (84.84%), Query Frame = 3 
Query:   48 KKETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEELKADETEYSVDQIERESAESNIDEVDEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFGGEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNSDD 977
            KKETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEELKADETEYSVDQIERESAESNIDEVDEEEITQEKFNL+++SKV E D S D NESEPS S INE+ +GE    ++VN + VSK +E D+S DP++ EP +S INE  GE+T++K NL E  K+ E +DS DPN+ E+ E NI  V+E +    +++ N  E+S + E D S D
Sbjct: 2480 KKETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEELKADETEYSVDQIERESAESNIDEVDEEEITQEKFNLKEVSKVDETDHSVDPNESEPSGSNINEIGQGEKNISDKVNVDQVSKDDESDHSVDPNKSEPGKSYINEIEGEITHKKINLDEVPKVDENNDSVDPNEIEIVESNIENVEEGKTNLSEES-NINESSTIDEPDLSVD 2788

HSP 2 Score: 283.878 bits (725), Expect = 2.525e-86
Identity = 201/361 (55.68%), Postives = 232/361 (64.27%), Query Frame = 3 
Query:   54 ETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSL---IY-----------------------------------------------NANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEEL-KADETEYSVDQIERESAESNIDEVDEEE--ITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFGGEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNSDD 977
            E KQQE VN +E+S+V EK +S + N+ E VEPNIKNV E E +I EE  +  LS ID    SV  NE +LAE  I  +++ E ++   +Y                                                 NL ++SKV E   S D NE+  +E    EVD  E  Q + V  EE+ K +E + S D  E   AE  I E+D+ +  IT +  NL ++SKV E+D S D NE+EPSES INEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFGGEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNSDD
Sbjct: 3173 EPKQQEQVNPEEVSKVNEKGDSGDTNESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYTNESKLAEHYIIEIDQGENNVADPVYVDEGSNFYGKDDSGDLNEETDHSADQIEREPAESNINEAGEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEEVSKVNEKDNSYDPNESGLAEYYIVEIDQGKNNIT-DPVNLNEISKVDEEDHSADLNENEPSESNINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFGGEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNSDD 3532

HSP 3 Score: 228.024 bits (580), Expect = 7.148e-67
Identity = 168/311 (54.02%), Postives = 213/311 (68.49%), Query Frame = 3 
Query:   54 ETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEE-LKADETEYSVDQIERESAESNIDEVDEEEITQE-KFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFG-GEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNSDD 977
            ETKQQ+ VNS+++ EV EK NS +PN  EF++PN+KNVDE EKNIIEES +K+LS +D  +HS D+ + ELAE NI+NV+E+ER++  +ANL E SKVD+I +S + NE TLTEPITKE+D  E  QTD+V SEE  K DE  YS D  E E AESNI+EVD+ E  Q+ K +LE++S V + D S DSNES+ +E  I EVD GE    EQ N E VS V E D S D +E EP ESNIN+    E T E+    E SK+ EKD S DPN+S+  E NI  VDE+E KQ +Q  N  + SK+ E D+S D
Sbjct: 1633 ETKQQDQVNSEKVIEVVEKYNSDDPNYGEFIDPNMKNVDEEEKNIIEESNVKSLSNVDEKEHSTDQIKSELAEPNIRNVDEEERNITADANLKEESKVDKIDHSVNLNEKTLTEPITKEIDKNEQTQTDHVISEEKSKLDEKYYSADPNESEPAESNINEVDKAERKQQKKIDLEEVSNVDKTDHSADSNESKLAEQNIIEVDVGERNISEQDNLEEVSNVFETDPSVDLNENEPTESNINKVDEEETTQEQLISEEVSKVGEKDVSVDPNESDFVEHNIKKVDEDEKKQHKQ-INL-DVSKLDETDHSVD 1941

HSP 4 Score: 181.8 bits (460), Expect = 7.287e-51
Identity = 147/308 (47.73%), Postives = 193/308 (62.66%), Query Frame = 3 
Query:   66 QELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEEL-KADETEYSVDQIERESAESNIDEVDE-EEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEF--GGEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNSDD 977
             E  N +E+S+  E D+S +PN++E V+PNIK +DE E NI EES +  LS ID    SV  NE +LAE  I  +++ + ++    NL E+SKVDE  +S D NEN  +E    EVD  E  Q + V  E + K +E + S D  E E A+ NI E+D+ E    +  N++++SKV EK  S DS ESEPSE  INEVDEGEPKQQEQ NPE V KVN+KDNS+DP++ E  ES+I E   G     +  N+ E SK+ E D + + N+SE  E NI  VDE EPKQQ+Q  N EE SKV+EK +S D
Sbjct: 2890 HEKFNLEEVSKARENDDSVDPNEREIVQPNIKCLDEGETNISEESNVNELSKIDEIDRSVYPNESKLAEHYIIEIDQSKNNITDPVNLNEISKVDEKGHSADLNENEPSEYNINEVDEGEPKQQEQVNPEGVSKVNEKDNSYDPNECELAQHNITEIDQGENNIADSVNVDEVSKVDEKYHSADSKESEPSEDNINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQ-VNPEEVSKVNEKGDSGD 3196

HSP 5 Score: 169.088 bits (427), Expect = 1.493e-46
Identity = 139/311 (44.69%), Postives = 178/311 (57.23%), Query Frame = 3 
Query:   54 ETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESY-LKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEELKADETEYSVDQIERESAESNIDEVDEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEF--GGEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNSDD 977
            E KQ+E VN +E+S+V E D S +PN  E   P+  N++E+   +  E + L+ +S       SVD NE E+ + NIK ++E E ++   +N+ E+SK+DEI  S  PNE+ L E    E+D  +N  TD V                                       NL ++SKV EK  S D NE+EPSE  INEVDEGEPKQQEQVNPEGVSKVNEKDNS DP+E E A+ NI E   G     +  N+ E SK+ EK  S D  +SE +E NIN VDE EPKQQ+Q FN EE  KV++KDNSDD
Sbjct: 2847 EPKQKEQVNLEEVSKVNENDYSRDPNGSE---PDDSNINELGGKMTHEKFNLEEVSKARENDDSVDPNEREIVQPNIKCLDEGETNISEESNVNELSKIDEIDRSVYPNESKLAEHYIIEIDQSKNNITDPV---------------------------------------NLNEISKVDEKGHSADLNENEPSEYNINEVDEGEPKQQEQVNPEGVSKVNEKDNSYDPNECELAQHNITEIDQGENNIADSVNVDEVSKVDEKYHSADSKESEPSEDNINEVDEGEPKQQEQ-FNPEEVLKVNKKDNSDD 3114

HSP 6 Score: 166.007 bits (419), Expect = 1.777e-45
Identity = 153/362 (42.27%), Postives = 198/362 (54.70%), Query Frame = 3 
Query:   54 ETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEEL-KADETEYSVDQIERESAESNIDEVDEEEI-TQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVN---------------------------------------------------EKDNSNDPSEIEPAESNINEFG-GEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNSDD 977
            E KQQE VN + +S+V EKDNSY+PN+ E  + NI  +D+ E NI +   +  +S +D   HS D  E E +E NI  V+E E       N  EV KV++   S+DPN++ L E    E+D  EN   D+V  +E+ K +ET+++ +  E E  ESNI EVDE E   QE+ N E++SKV EK DSGD+NESE  E  I  V EGE    E+ N   +SK++                                                   E D+S D  E EPAESNINE G  E+T EKFNL + SK++EKDDS D N+SE +E  IN VDE EPKQQ+Q  N EE SKV+EKDNS D
Sbjct: 3009 EPKQQEQVNPEGVSKVNEKDNSYDPNECELAQHNITEIDQGENNIADSVNVDEVSKVDEKYHSADSKESEPSEDNINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTNESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYTNESKLAEHYIIEIDQGENNVADPVYVDEGSNFYGKDDSGDLNEETDHSADQIEREPAESNINEAGEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQ-VNPEEVSKVNEKDNSYD 3369

HSP 7 Score: 162.54 bits (410), Expect = 2.897e-44
Identity = 135/308 (43.83%), Postives = 186/308 (60.39%), Query Frame = 3 
Query:   66 QELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYN-ANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVK----SEELKADETEYSVDQIERESAESNIDEVDE-EEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFGGEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNS 971
            QE  N KE+S+V E D+S +PN+ E    NI  + + EKNI ++  +  +S  D + HSVD N+ E  +     +NE E  + +   NL EV KVDE   S DPNE    E +   ++N+E  +T+  +    +E    DE + SVD  + E +E  I E+D+ E+   +  N++++SKV E D + + NESEP ES I EVD GEPKQ+EQVN E VSKVNE D S DP+  EP +SNINE GG+MT+EKFNL E SK  E DDS DPN+ E+ + NI  +DE E    +++ N  E SK+ E D S
Sbjct: 2648 QEKFNLKEVSKVDETDHSVDPNESEPSGSNINEIGQGEKNISDKVNVDQVSKDDESDHSVDPNKSEPGK---SYINEIEGEITHKKINLDEVPKVDENNDSVDPNE---IEIVESNIENVEEGKTNLSEESNINESSTIDEPDLSVDPNKSELSEHYIIEIDQVEKNISDPVNVDEVSKVEETDRTANLNESEPYESNIKEVDVGEPKQKEQVNLEEVSKVNENDYSRDPNGSEPDDSNINELGGKMTHEKFNLEEVSKARENDDSVDPNEREIVQPNIKCLDEGETNISEES-NVNELSKIDEIDRS 2948

HSP 8 Score: 157.532 bits (397), Expect = 1.511e-42
Identity = 138/330 (41.82%), Postives = 181/330 (54.85%), Query Frame = 3 
Query:   51 KETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKS-EELKADETEYSVDQIERESAESNIDEVDEEEITQ------------------------------------------EKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFGGEMTNEK--FNLVEASKIFEKDDSFDPNKSELAELNINGVDEEE 905
            +ETKQ E VNS+E+S V   D+S  PN+ E  E NI  VD  ++NI E+  L  +S +D     VD NE E AE NI +V+E E       N  EVS V E+  S   NENTLTEPI KEVDN+ENIQ  +  S EE K DET++S+   + E AESNI++VDEEE  Q                                          E+ N+++L KV E + S D NE E  E  I E+D+ E    +QVN + +SKV+E D+S DP+E E A SNINE   + T ++   N  E S+++EKD+S++PNK E  E NI  VDE E
Sbjct: 2194 RETKQLEQVNSEEVSNVDITDHSGEPNEHELAEQNIIEVDVDKRNISEKVNLDEVSKVDEIDQFVDPNESESAESNINDVDEGETKQQEQVNFEEVSNVFELENSVILNENTLTEPIKKEVDNVENIQNVHANSEEESKVDETDHSIFPNQSEPAESNINKVDEEETKQQEQVNSDEVINVDVKDKSVNPDESELGEPNCIEIVEVDKNISEESNVKELLKVTETNHSVDQNEGELDEQNIIEIDKSEKNISDQVNVDELSKVDEIDHSADPNESESANSNINEVNKKETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVE 2523

HSP 9 Score: 155.992 bits (393), Expect = 6.088e-42
Identity = 132/309 (42.72%), Postives = 177/309 (57.28%), Query Frame = 3 
Query:   54 ETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEELKADETEYSVDQIERESAESNIDEVDEEEITQE-KFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFGGEMTN--EKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNS 971
            E KQQE VNS E+S+V  KD S + N+ E  EPN+  +DEVEKNI E+S +K L  ++ T HS D+N+ ELA+  I  ++E E++++   N++                                             DET++S +  + E +ES I+EVDE +  Q+ K +L+ +SKV +KD S + NESE +ES I+EVDE E KQ EQVN E VS V+  D+S +P+E E AE NI E   +  N  EK NL E SK+ E D   DPN+SE AE NIN VDE E KQQ+Q  NFEE S V E +NS
Sbjct: 2036 EPKQQEQVNSDEVSKVDVKDKSVDTNESELCEPNVIEIDEVEKNISEKSNVKELLNVNETDHSDDQNDGELAKQIIIEIDEVEKNILDQVNVV---------------------------------------------DETDHSANSNKSEPSESKINEVDEADWKQQKKVDLDGVSKVDKKDRSINLNESELAESNISEVDERETKQLEQVNSEEVSNVDITDHSGEPNEHELAEQNIIEVDVDKRNISEKVNLDEVSKVDEIDQFVDPNESESAESNINDVDEGETKQQEQ-VNFEEVSNVFELENS 2298

HSP 10 Score: 152.525 bits (384), Expect = 8.079e-41
Identity = 140/311 (45.02%), Postives = 181/311 (58.20%), Query Frame = 3 
Query:   48 KKETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEELKADETEYSVDQIERESAESNIDEVDEEEITQEK-FNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFGGEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNSDD 977
            K E  Q + V S+E S++ EK  S +PN+ E  E NI  VD+ E+   ++  L+ +S +D T HS D NE +LAE NI  V+  ER++    NL EVS V E   S D NEN  TE    +VD  E  Q   +  E  K  E + SVD  E +  E NI +VDE+E  Q K  NL D+SK+ E D S D+NES+P ES I EVD+GE  QQEQVN E VS V++  +S D +E E A  NI +       EK  L + + +++ D S DPNK +LAE NIN VD  EPKQQ+Q  N +E SKV  KD S D
Sbjct: 1754 KNEQTQTDHVISEEKSKLDEKYYSADPNESEPAESNINEVDKAERKQQKKIDLEEVSNVDKTDHSADSNESKLAEQNIIEVDVGERNISEQDNLEEVSNVFETDPSVDLNENEPTESNINKVDEEETTQEQLISEEVSKVGEKDVSVDPNESDFVEHNIKKVDEDEKKQHKQINL-DVSKLDETDHSVDTNESKPVESNIIEVDDGEWTQQEQVNSEEVSNVDKTYHSVDQNESELANQNIIKIDK---GEKNILDQVNVLYKTDHSVDPNKIKLAEFNINEVDNGEPKQQEQ-VNSDEVSKVDVKDKSVD 2059

HSP 11 Score: 134.035 bits (336), Expect = 1.805e-34
Identity = 142/353 (40.23%), Postives = 184/353 (52.12%), Query Frame = 3 
Query:   54 ETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKS-EELKADETEYSVDQIERESAESNIDEVDEEEITQE-KFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFGGEMTN-----------------EKFNLV--------------------------EASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNSDD 977
            ETKQ E VNS+E+S V   D+S  PN+ E  E NI  VD  ++NI E+  L  +S +D     VD NE E AE NI +V+E E       N  EVS V E+  S   NENTLTE I KEVDN+ENIQ  +  S EE K DET++S+   + E AESNI++VDEEE  Q+ + N E + +V EK +S D N  E  +  +  VDE E    E+ N + +S V+EK++S D  + E AE NI     E  N                    NL                           E SK+ EK  S DPN+SE AE NIN VD+ E KQQ++  + EE S V + D+S D
Sbjct: 1469 ETKQLEQVNSEEVSNVDITDHSGEPNEHELAEQNIIGVDVDKRNISEKVNLDEVSKVDEIDQFVDPNESESAESNINDVDEGETKQQEQVNFEEVSNVYELENSVILNENTLTESIKKEVDNVENIQNVHANSEEESKVDETDHSIFPNQSEPAESNINKVDEEETKQQDQVNSEKVIEVVEKYNSDDPNYGEFIDPNMKNVDEEEKNIIEESNVKSLSNVDEKEHSTDQIKSELAEPNIRNVDEEERNITADANLKEESKVDKIDHSVNLNEKTLTEPITKEIDKNEQTQTDHVISEEKSKLDEKYYSADPNESEPAESNINEVDKAERKQQKK-IDLEEVSNVDKTDHSAD 1820

HSP 12 Score: 134.035 bits (336), Expect = 2.061e-34
Identity = 130/309 (42.07%), Postives = 180/309 (58.25%), Query Frame = 3 
Query:   66 QELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEEL-KADETEYSVDQIERESAESNIDEVDEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQ-VNPEGVSKVNEKDNSNDPSE---IEPAESNINEFGGEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNSDD 977
            QE  N ++LS+VYEKD+S + N+ E  E  I  VDE E    E+   + +S ++   +S D NE  LAE  I  +++ + ++    NL E+SKVDE  +S D NEN  +E    EVD  E  Q + V  E + K +E + S D  E E AESNI+E    E+T EKFNL + SK++EKDDS D N+SE +E  IN VDE EPKQQ+Q  N E  SKV+EKDNS+DP+E   +EP   NI E G +  +E+ N+ E +K+F K  SFD  +    E NI             + N+++ S V E D++DD
Sbjct: 3309 QEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEEVSKVNEKDNSYDPNESGLAEYYIVEIDQGKNNITDPVNLNEISKVDEEDHSADLNENEPSESNINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFG-GEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNSDDPNENELVEPHIKNIVE-GEKNISEESNVKELTKVFGKQHSFDQIEGNSEERNITD-----------DVNYKDVSHVDETDHADD 3604

HSP 13 Score: 128.257 bits (321), Expect = 1.746e-32
Identity = 140/353 (39.66%), Postives = 184/353 (52.12%), Query Frame = 3 
Query:   54 ETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEP--ITKEVDNIENIQTDYVKSEELKADETEYSVDQIERESAESNIDEVDEEEI-TQEKFNLEDLSKVY-----------------------------------------EKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSE---IEPAESNINEFGGEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNS 971
            ETK+QE +N +E++ V E+D S + N+    EP +K V  VE   I+    +  S +D T HSVD NE ELAE NI  V+E E   +   N  EVS VD   +S +PNE+ L E   I  +VD   NI       E  K DE +  VD  E ESAESNI++VDE E   QE+ N E++S VY                                         E D S   N+SEP+ES IN+VDE E KQQ+QVN E V +V EK NS+DP+    I+P   N++E    +  E+ N+   S + EK+ S D  KSELAE NI  VDEEE +    + N +E SKV + D+S
Sbjct: 1387 ETKKQEQINLEEVTNVDERDYSVDQNEITLTEPIMKEVYNVENIQIQRVNSEENSKLDETDHSVDLNESELAESNISEVDEGETKQLEQVNSEEVSNVDITDHSGEPNEHELAEQNIIGVDVDK-RNISEKVNLDEVSKVDEIDQFVDPNESESAESNINDVDEGETKQQEQVNFEEVSNVYELENSVILNENTLTESIKKEVDNVENIQNVHANSEEESKVDETDHSIFPNQSEPAESNINKVDEEETKQQDQVNSEKVIEVVEKYNSDDPNYGEFIDPNMKNVDEEEKNII-EESNVKSLSNVDEKEHSTDQIKSELAEPNIRNVDEEE-RNITADANLKEESKVDKIDHS 1736

HSP 14 Score: 125.561 bits (314), Expect = 1.377e-31
Identity = 139/353 (39.38%), Postives = 186/353 (52.69%), Query Frame = 3 
Query:   54 ETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNEN-----------------------------------------TLTEPITKEVDNIEN--IQTDYVKSEELKADETEYSVDQIERESAESNIDEVDEEEITQ-EKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFG-GEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNSDD 977
            ETKQQE VNS E+  V  KD S NP++ E  EPN   + EV+KNI EES +K L  +  T HSVD+NE EL E NI  +++ E+++    N+ E+SKVDEI +S DPNE+                                            EP  K VD +E   I+  Y+K+  +  D T++SVD+ E E AE NI  V+E+E +     NL ++SKV E   S D NE+  +E    EVD  E  Q + V  E + K +E + S D  E E AESNI+E    E+T EKFNL E SK+ E D S DPN+SE +  NIN + + E K      N ++ SK  E D+S D
Sbjct: 2359 ETKQQEQVNSDEVINVDVKDKSVNPDESELGEPNCIEIVEVDKNISEESNVKELLKVTETNHSVDQNEGELDEQNIIEIDKSEKNISDQVNVDELSKVDEIDHSADPNESESANSNINEVNKKETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSM-IDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEEL-KADETEYSVDQIERESAESNIDEVDEEEITQEKFNLKEVSKVDETDHSVDPNESEPSGSNINEIGQGE-KNISDKVNVDQVSKDDESDHSVD 2708

HSP 15 Score: 120.939 bits (302), Expect = 6.535e-30
Identity = 125/329 (37.99%), Postives = 174/329 (52.89%), Query Frame = 3 
Query:   60 KQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKN-VNEKERSLI--------------YNANLIEV----------SKVDEIYYSEDPNENTLTEPITKEVDNIE-NIQTDYVKSEELKADETEYSVDQIERESAESNIDEVDEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFGGEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDN 968
            +QQ+  N +E S+V+EKDNS +PN+ E VEP+IKN+ E EKNI EES +K L+ + G +HS D+ E    E NI + VN K+ S +                +N  EV          SKVDE   S+DP +N L EP+ K  +  E NI  +    + LK D+TE+SV+Q++ +  E NI          +  NL DLS+V E D S +SNE   +   + EVD+G+  Q E  N E +SKV+E  +S +P+E E  ESNI E     TN++                +PN+S   E N N VD  E K Q ++ N EE S V + DN
Sbjct: 3511 QQQQNFNFEEASKVHEKDNSDDPNENELVEPHIKNIVEGEKNISEESNVKELTKVFGKQHSFDQIEGNSEERNITDDVNYKDVSHVDETDHADDSNESEPAESNFNEVDEEEGNSEEESKVDEKDNSDDPYKNELVEPLIKNFNVGEKNISGESCLKDLLKVDKTEHSVNQMKCKIEERNI---------TDDANLRDLSQVDEIDHSVNSNERTLTGDNVIEVDKGQKNQHEPANLEEMSKVDEIHHSANPNESELDESNIYEVDEGETNQQ-------------KQVNPNESTPIECNTNEVDGGE-KYQTEHVNLEEESMVDKIDN 3816

HSP 16 Score: 117.472 bits (293), Expect = 8.693e-29
Identity = 138/385 (35.84%), Postives = 187/385 (48.57%), Query Frame = 3 
Query:   48 KKETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLI--EVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEELKADETEYSVDQIERESAESNIDEVDEEEITQ-EKFNLEDLSKV------------------------------------YEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEF-----------------------------GGEMTN---------EKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNS 971
            K E KQQ+ ++ +E+S V + D+S + N+ +  E NI  VD  E+NI E+  L+ +S +  T  SVD NE E  E NI  V+E+E +      LI  EVSKV E   S DPNE+   E   K+VD  E  Q   +  +  K DET++SVD  E +  ESNI EVD+ E TQ E+ N E++S V                                    Y+ D S D N+ + +E  INEVD GEPKQQEQVN + VSKV+ KD S D +E E  E N+ E                               GE+           EK  L + + + E D S + NKSE +E  IN VDE + KQQ++  + +  SKV +KD S
Sbjct: 1795 KAERKQQKKIDLEEVSNVDKTDHSADSNESKLAEQNIIEVDVGERNISEQDNLEEVSNVFETDPSVDLNENEPTESNINKVDEEETT---QEQLISEEVSKVGEKDVSVDPNESDFVEHNIKKVDEDEKKQHKQINLDVSKLDETDHSVDTNESKPVESNIIEVDDGEWTQQEQVNSEEVSNVDKTYHSVDQNESELANQNIIKIDKGEKNILDQVNVLYKTDHSVDPNKIKLAEFNINEVDNGEPKQQEQVNSDEVSKVDVKDKSVDTNESELCEPNVIEIDEVEKNISEKSNVKELLNVNETDHSDDQNDGELAKQIIIEIDEVEKNILDQVNVVDETDHSANSNKSEPSESKINEVDEADWKQQKK-VDLDGVSKVDKKDRS 2175

HSP 17 Score: 100.523 bits (249), Expect = 4.503e-23
Identity = 96/245 (39.18%), Postives = 131/245 (53.47%), Query Frame = 3 
Query:   99 VYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEEL-KADETEYSVDQIERESAESNIDEVDEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFG-GEMTNEKFNLVEASKI 827
            V EKDNS +P K E VEP IKN +  EKNI  ES LK L  +D T+HSV++ + ++ E NI +          +ANL ++S+VDEI +S + NE TLT     EVD  +  Q +    EE+ K DE  +S +  E E  ESNI EVDE E  Q+K                + NES P E   NEVD GE  Q E VN E  S V++ DN  DP E    + ++N+   GE    +  +V+++ +
Sbjct: 3631 VDEKDNSDDPYKNELVEPLIKNFNVGEKNISGESCLKDLLKVDKTEHSVNQMKCKIEERNITD----------DANLRDLSQVDEIDHSVNSNERTLTGDNVIEVDKGQKNQHEPANLEEMSKVDEIHHSANPNESELDESNIYEVDEGETNQQK--------------QVNPNESTPIECNTNEVDGGEKYQTEHVNLEEESMVDKIDNFVDPKESPFTKPDVNKVSEGEKNKAETQIVKSTDV 3851

HSP 18 Score: 90.5077 bits (223), Expect = 1.217e-19
Identity = 99/260 (38.08%), Postives = 133/260 (51.15%), Query Frame = 3 
Query:  324 NLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEEL-KADETEYSVDQIERESAESNIDEVDEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFG-GEM------------------------------------------TNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNS 971
            NL  ++K+D+   S DP E+   E    ++D  E I+   V  EE+ K DETE  ++    E A+ NI +V+EE   QE+ NLE+++ V E+D S D NE   +E  + EV   E  Q ++VN E  SK++E D+S D +E E AESNI+E   GE                                            +EK NL E SK+ E D   DPN+SE AE NIN VDE E KQQ+Q  NFEE S V+E +NS
Sbjct: 1315 NLYVMTKMDQKDNSVDPYESAHIEAKINKIDE-ETIKQKQVNLEEVPKVDETEEFINPNRSELADHNIIKVEEETKKQEQINLEEVTNVDERDYSVDQNEITLTEPIMKEVYNVENIQIQRVNSEENSKLDETDHSVDLNESELAESNISEVDEGETKQLEQVNSEEVSNVDITDHSGEPNEHELAEQNIIGVDVDKRNISEKVNLDEVSKVDEIDQFVDPNESESAESNINDVDEGETKQQEQ-VNFEEVSNVYELENS 1572
The following BLAST results are available for this feature:
BLAST of SMED30024220 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024220 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024220 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024220 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024220 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024220 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024220 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024220 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024220 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024220 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024220 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024220 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024220 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024220 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000064314.11.946e-12476.13SMESG000064314.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30024220 ID=SMED30024220|Name=SMED30024220|organism=Schmidtea mediterranea sexual|type=transcript|length=978bp
ATCCAAATGAAAGTGAATCTGCTAACTCTAATATTAATGAAGTTAACAAG
AAAGAAACAAAACAACAAGAGCTAGTTAATTCTAAAGAATTATCAGAGGT
TTATGAAAAGGATAATTCTTATAATCCTAATAAAAAAGAATTTGTTGAGC
CTAATATCAAGAACGTGGACGAAGTAGAAAAGAATATTATCGAGGAATCC
TATTTAAAAGCACTGTCAATGATTGATGGAACAAAGCATTCTGTTGATGA
AAATGAAGAGGAGCTTGCTGAACTTAATATCAAGAACGTCAATGAAAAAG
AAAGGAGTTTGATCTATAATGCAAATTTAATAGAAGTGTCAAAAGTTGAT
GAAATATATTATTCTGAAGATCCGAATGAAAATACGCTTACTGAGCCCAT
CACGAAAGAAGTCGATAATATAGAAAACATTCAAACCGATTATGTAAAAT
CTGAAGAGTTAAAAGCTGATGAAACAGAATATTCTGTCGATCAAATTGAA
CGTGAATCTGCTGAGTCTAATATCGATGAAGTCGACGAGGAAGAAATAAC
GCAAGAGAAATTTAATTTGGAAGATTTATCAAAAGTTTATGAAAAAGATG
ACTCTGGTGATTCAAATGAAAGTGAGCCTTCTGAGTCTTATATCAATGAG
GTTGATGAGGGCGAACCAAAACAACAAGAACAGGTTAATCCTGAAGGGGT
ATCAAAGGTTAATGAAAAAGATAATTCCAATGATCCTAGTGAAATTGAAC
CTGCCGAGTCTAATATCAATGAATTCGGAGGTGAAATGACAAACGAAAAG
TTTAATTTGGTAGAAGCATCAAAGATTTTTGAAAAGGATGATTCTTTTGA
TCCAAATAAAAGTGAACTTGCTGAGTTAAATATCAATGGAGTTGATGAAG
AAGAACCGAAACAACAACAACAAAATTTTAATTTTGAAGAAGCATCAAAG
GTTCATGAAAAAGATAATTCTGATGATC
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protein sequence of SMED30024220-orf-1

>SMED30024220-orf-1 ID=SMED30024220-orf-1|Name=SMED30024220-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=325bp
PNESESANSNINEVNKKETKQQELVNSKELSEVYEKDNSYNPNKKEFVEP
NIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKE
RSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKS
EELKADETEYSVDQIERESAESNIDEVDEEEITQEKFNLEDLSKVYEKDD
SGDSNESEPSESYINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEP
AESNINEFGGEMTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEE
EPKQQQQNFNFEEASKVHEKDNSDD
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
PLANA:0002089reproductive organ
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 74..101
NoneNo IPR availableCOILSCoilCoilcoord: 148..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..325
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..262
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15