60S ribosomal protein L31

Overview


Name	60S ribosomal protein L31
Smed ID	SMED30024189
Length (bp)	443

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of 60S ribosomal protein L31 (SMED30024189) t-SNE clustered cells

Violin plots show distribution of expression levels for 60S ribosomal protein L31 (SMED30024189) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 60S ribosomal protein L31 (SMED30024189) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 60S ribosomal protein L31 (SMED30024189) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30024189

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 22

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30024189		SmedASXL_018687	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30024189		SmedASXL_018687	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
Smed sexual biotype	SMED30024189	h1SMcG0020802	Contig11522	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30024189	h1SMcG0020802	Contig11522	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30024189		Contig32142	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30024189		Contig32142	newmark_ests	PMID:29674431 Fincher et al., 2018
pharynx	SMED30024189		dd_Smed_v4_113_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
protonephridia	SMED30024189		dd_Smed_v4_113_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30024189		dd_Smed_v4_113_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30024189		dd_Smed_v4_113_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30024189		dd_Smed_v4_113_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30024189		dd_Smed_v4_113_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30024189		dd_Smed_v4_113_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30024189		dd_Smed_v4_113_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchyma	SMED30024189		dd_Smed_v4_113_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30024189		dd_Smed_v4_113_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30024189		dd_Smed_v4_113_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30024189		dd_Smed_v4_113_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30024189		Contig35372	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30024189		Contig35372	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
head region	SMED30024189		OX_Smed_1.0.08460	ox_Smed_v2	PMID:24238224 Kao et al., 2013
neoblast	SMED30024189		dd_Smed_v6_113_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of 60S ribosomal protein L31 vs. Ensembl Human
Match: RPL31 (ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334])

HSP 1 Score: 164.081 bits (414), Expect = 1.385e-52
Identity = 75/98 (76.53%), Postives = 88/98 (89.80%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T FK+  TVNV+
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123

[Close]

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T FK+  TVNV+
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Human
Match: RPL31 (ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334])

HSP 1 Score: 159.073 bits (401), Expect = 9.954e-51
Identity = 72/95 (75.79%), Postives = 85/95 (89.47%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTV 406
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T FK K ++
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKSKFSI 120

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Human
Match: RPL31 (ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334])

HSP 1 Score: 157.918 bits (398), Expect = 4.084e-50
Identity = 71/90 (78.89%), Postives = 82/90 (91.11%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFK 391
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T FK
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFK 115

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Human
Match: RPL31 (ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334])

HSP 1 Score: 156.762 bits (395), Expect = 8.133e-50
Identity = 71/90 (78.89%), Postives = 82/90 (91.11%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFK 391
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T FK
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFK 115

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Celegans
Match: rpl-31 (60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:Q9U332])

HSP 1 Score: 128.642 bits (322), Expect = 3.953e-39
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TI+IH RI GIG K RAPRAI EIKKFA+ QM T DVRVD +LNKF+WSKGI+NVPY+VRVRL+R++NEDEDS  K YTL TYVPCT+F     VNV+
Sbjct:   22 TIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVD 119

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Celegans
Match: rpl-31 (60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:Q9U332])

HSP 1 Score: 85.8853 bits (211), Expect = 7.547e-23
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 2

Query:  215 MGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            M T DVRVD +LNKF+WSKGI+NVPY+VRVRL+R++NEDEDS  K YTL TYVPCT+F     VNV+
Sbjct:    1 MKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVD 67

[Close]

Query:  215 MGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            M T DVRVD +LNKF+WSKGI+NVPY+VRVRL+R++NEDEDS  K YTL TYVPCT+F     VNV+
Sbjct:    1 MKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVD 67

[Close]

Query:  215 MGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            M T DVRVD +LNKF+WSKGI+NVPY+VRVRL+R++NEDEDS  K YTL TYVPCT+F     VNV+
Sbjct:    1 MKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVD 67

[Close]

Query:  215 MGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            M T DVRVD +LNKF+WSKGI+NVPY+VRVRL+R++NEDEDS  K YTL TYVPCT+F     VNV+
Sbjct:    1 MKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVD 67

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BLAST of 60S ribosomal protein L31 vs. Ensembl Fly
Match: RpL31 (gene:FBgn0285949 transcript:FBtr0088526)

HSP 1 Score: 131.724 bits (330), Expect = 3.149e-40
Identity = 66/99 (66.67%), Postives = 85/99 (85.86%), Query Frame = 2

Query:  119 CTINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            CTI++ KR+H IGFK RAPRAIKEI+KFA+++MGT DVR+D RLNK +WSKGIR+ P+++RVRLAR++N+DEDSP+K YT VTYVP + FK+  T NVE
Sbjct:   22 CTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVTYVPVSTFKNLQTENVE 120

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Fly
Match: RpL31 (gene:FBgn0285949 transcript:FBtr0088527)

HSP 1 Score: 131.724 bits (330), Expect = 3.149e-40
Identity = 66/99 (66.67%), Postives = 85/99 (85.86%), Query Frame = 2

Query:  119 CTINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            CTI++ KR+H IGFK RAPRAIKEI+KFA+++MGT DVR+D RLNK +WSKGIR+ P+++RVRLAR++N+DEDSP+K YT VTYVP + FK+  T NVE
Sbjct:   22 CTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVTYVPVSTFKNLQTENVE 120

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Fly
Match: RpL31 (gene:FBgn0285949 transcript:FBtr0088525)

HSP 1 Score: 131.724 bits (330), Expect = 3.149e-40
Identity = 66/99 (66.67%), Postives = 85/99 (85.86%), Query Frame = 2

Query:  119 CTINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            CTI++ KR+H IGFK RAPRAIKEI+KFA+++MGT DVR+D RLNK +WSKGIR+ P+++RVRLAR++N+DEDSP+K YT VTYVP + FK+  T NVE
Sbjct:   22 CTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVTYVPVSTFKNLQTENVE 120

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Zebrafish
Match: rpl31 (ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121])

HSP 1 Score: 157.918 bits (398), Expect = 2.198e-50
Identity = 73/98 (74.49%), Postives = 86/98 (87.76%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHGI FK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KG+RNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T +K   TVNV+
Sbjct:   24 TINIHKRIHGISFKRRAPRALKEIRKFAVKEMGTPDVRIDTRLNKAVWAKGVRNVPYRMRVRLSRKRNEDEDSPNKLYTLVTYVPVTTYKGLQTVNVD 121

[Close]

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHGI FK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KG+RNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T +K   TVNV+
Sbjct:   24 TINIHKRIHGISFKRRAPRALKEIRKFAVKEMGTPDVRIDTRLNKAVWAKGVRNVPYRMRVRLSRKRNEDEDSPNKLYTLVTYVPVTTYKGLQTVNVD 121

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Xenopus
Match: ankle1 (ankyrin repeat and LEM domain containing 1 [Source:Xenbase;Acc:XB-GENE-6045314])

HSP 1 Score: 158.688 bits (400), Expect = 1.602e-50
Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHGIGFK RAPRA+KEI+KFA K+M T DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T++K   TVNV+
Sbjct:   26 TINIHKRIHGIGFKKRAPRALKEIRKFAVKEMRTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTNYKGLQTVNVD 123

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Xenopus
Match: ankle1 (ankyrin repeat and LEM domain containing 1 [Source:Xenbase;Acc:XB-GENE-6045314])

HSP 1 Score: 152.91 bits (385), Expect = 4.075e-48
Identity = 70/90 (77.78%), Postives = 82/90 (91.11%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFK 391
            TINIHKRIHGIGFK RAPRA+KEI+KFA K+M T DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T++K
Sbjct:   26 TINIHKRIHGIGFKKRAPRALKEIRKFAVKEMRTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTNYK 115

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Xenopus
Match: ankle1 (ankyrin repeat and LEM domain containing 1 [Source:Xenbase;Acc:XB-GENE-6045314])

HSP 1 Score: 152.525 bits (384), Expect = 4.635e-48
Identity = 70/90 (77.78%), Postives = 82/90 (91.11%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFK 391
            TINIHKRIHGIGFK RAPRA+KEI+KFA K+M T DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T++K
Sbjct:   26 TINIHKRIHGIGFKKRAPRALKEIRKFAVKEMRTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTNYK 115

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Mouse
Match: Rpl31 (ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2149632])

HSP 1 Score: 164.081 bits (414), Expect = 9.509e-53
Identity = 75/98 (76.53%), Postives = 88/98 (89.80%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T FK+  TVNV+
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123

[Close]

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T FK+  TVNV+
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123

[Close]

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T FK+  TVNV+
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Mouse
Match: Rpl31 (ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2149632])

HSP 1 Score: 158.688 bits (400), Expect = 1.192e-50
Identity = 72/92 (78.26%), Postives = 83/92 (90.22%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDK 397
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T FK K
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKSK 117

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Mouse
Match: Rpl31 (ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2149632])

HSP 1 Score: 93.2041 bits (230), Expect = 2.275e-25
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIR 280
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIR
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIR 78

[Close]

BLAST of 60S ribosomal protein L31 vs. UniProt/SwissProt
Match: sp|P62902|RL31_RAT (60S ribosomal protein L31 OS=Rattus norvegicus OX=10116 GN=Rpl31 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.651e-52
Identity = 75/98 (76.53%), Postives = 88/98 (89.80%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T FK+  TVNV+
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123

[Close]

BLAST of 60S ribosomal protein L31 vs. UniProt/SwissProt
Match: sp|P62901|RL31_PIG (60S ribosomal protein L31 OS=Sus scrofa OX=9823 GN=RPL31 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.651e-52
Identity = 75/98 (76.53%), Postives = 88/98 (89.80%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T FK+  TVNV+
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123

[Close]

BLAST of 60S ribosomal protein L31 vs. UniProt/SwissProt
Match: sp|P62900|RL31_MOUSE (60S ribosomal protein L31 OS=Mus musculus OX=10090 GN=Rpl31 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.651e-52
Identity = 75/98 (76.53%), Postives = 88/98 (89.80%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T FK+  TVNV+
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123

[Close]

BLAST of 60S ribosomal protein L31 vs. UniProt/SwissProt
Match: sp|Q1KSC7|RL31_MARMO (60S ribosomal protein L31 OS=Marmota monax OX=9995 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.651e-52
Identity = 75/98 (76.53%), Postives = 88/98 (89.80%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T FK+  TVNV+
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123

[Close]

BLAST of 60S ribosomal protein L31 vs. UniProt/SwissProt
Match: sp|P62899|RL31_HUMAN (60S ribosomal protein L31 OS=Homo sapiens OX=9606 GN=RPL31 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.651e-52
Identity = 75/98 (76.53%), Postives = 88/98 (89.80%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHG+GFK RAPRA+KEI+KFA K+MGT DVR+D RLNK VW+KGIRNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T FK+  TVNV+
Sbjct:   26 TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123

[Close]

BLAST of 60S ribosomal protein L31 vs. TrEMBL
Match: A0A183A0L3 (Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS498 PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.681e-53
Identity = 81/98 (82.65%), Postives = 90/98 (91.84%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TI++HKRIHGIGFK RAPRAIKEIKKFA+K MGTEDVR+ VRLN+F+WSKG+RNVPY+VRVRLARK NEDEDSPHK YTLVTYVPCTDFK K  +NVE
Sbjct:   22 TIHLHKRIHGIGFKKRAPRAIKEIKKFAKKMMGTEDVRIGVRLNEFIWSKGVRNVPYRVRVRLARKTNEDEDSPHKFYTLVTYVPCTDFKGKQIINVE 119

[Close]

BLAST of 60S ribosomal protein L31 vs. TrEMBL
Match: W6US36 (60S ribosomal protein L31 OS=Echinococcus granulosus OX=6210 GN=EGR_01538 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.284e-53
Identity = 77/98 (78.57%), Postives = 92/98 (93.88%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TIN+HKRIHG+GFK RAPRA+KEI+KFAQK MGT+DVRV+VRLN+F+WSKG+RNVPY+VRV+LARK+NEDEDSPHK YTLV+YVPC+DFK K  +NVE
Sbjct:   21 TINLHKRIHGVGFKKRAPRALKEIRKFAQKMMGTDDVRVNVRLNEFLWSKGVRNVPYRVRVKLARKRNEDEDSPHKFYTLVSYVPCSDFKGKQNINVE 118

[Close]

BLAST of 60S ribosomal protein L31 vs. TrEMBL
Match: A0A0R3U492 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS1454 PE=4 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 9.490e-53
Identity = 76/98 (77.55%), Postives = 92/98 (93.88%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TIN+H+RIHG+GFK RAPRAIKE++KFA+K MGTEDVRV+VRLN+F+WSKG+RNVPY+VRV+L+RK+NEDEDSPHK YTLV+YVPCTDFK K  +NVE
Sbjct:   22 TINLHRRIHGVGFKRRAPRAIKEVRKFAKKMMGTEDVRVNVRLNEFLWSKGVRNVPYRVRVKLSRKRNEDEDSPHKFYTLVSYVPCTDFKGKQNINVE 119

[Close]

BLAST of 60S ribosomal protein L31 vs. TrEMBL
Match: A0A068YF97 (Ribosomal protein L31 OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000850700 PE=4 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.710e-52
Identity = 77/98 (78.57%), Postives = 92/98 (93.88%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TIN+HKRIHG+GFK RAPRA+KEI+KFAQK MGT+DVRV+VRLN+F+WSKG+RNVPY+VRV+LARK+NEDEDSPHK YTLV+YVPC+DFK K  +NVE
Sbjct:   44 TINLHKRIHGVGFKKRAPRALKEIRKFAQKMMGTDDVRVNVRLNEFLWSKGVRNVPYRVRVKLARKRNEDEDSPHKFYTLVSYVPCSDFKGKQNINVE 141

[Close]

BLAST of 60S ribosomal protein L31 vs. TrEMBL
Match: T1FM36 (Uncharacterized protein OS=Helobdella robusta OX=6412 GN=20209885 PE=4 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.789e-52
Identity = 80/98 (81.63%), Postives = 88/98 (89.80%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHG+GFK RAPRAIKEIKKFAQKQMGT DVR++ RLNK +WSKGIRNVPY+VRVRLARK+NEDEDSPHK YTLV+YVP  +FK   TVNVE
Sbjct:   23 TINIHKRIHGMGFKKRAPRAIKEIKKFAQKQMGTMDVRIETRLNKHMWSKGIRNVPYRVRVRLARKRNEDEDSPHKLYTLVSYVPMVNFKGSQTVNVE 120

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Cavefish
Match: rpl31 (ribosomal protein L31 [Source:NCBI gene;Acc:103040992])

HSP 1 Score: 159.073 bits (401), Expect = 6.639e-51
Identity = 73/98 (74.49%), Postives = 86/98 (87.76%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TIN+HKRIHGI FK RAPRAIKEI+KFA K+MGT DVR+D RLNK VW+KG+RNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T +K   TVNV+
Sbjct:   26 TINVHKRIHGISFKKRAPRAIKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGVRNVPYRMRVRLSRKRNEDEDSPNKLYTLVTYVPVTTYKGLQTVNVD 123

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Sea Lamprey
Match: rpl31 (ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121])

HSP 1 Score: 164.081 bits (414), Expect = 1.420e-53
Identity = 75/98 (76.53%), Postives = 88/98 (89.80%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TIN+HKRIHGIGFK RAPRAIKEI+KFA+K+MGT DVR+D RLNK VWSKG+RNVPY++RVRL+RK+NEDEDSP+K YTLVT+VP T FK   TVNV+
Sbjct:   25 TINVHKRIHGIGFKKRAPRAIKEIRKFAEKEMGTPDVRIDTRLNKAVWSKGVRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTFVPTTSFKGLQTVNVD 122

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Yeast
Match: RPL31B (Ribosomal 60S subunit protein L31B; associates with karyopherin Sxm1p; loss of both Rpl31p and Rpl39p confers lethality; homologous to mammalian ribosomal protein L31, no bacterial homolog; RPL31B has a paralog, RPL31A, that arose from the whole genome duplication [Source:SGD;Acc:S000004398])

HSP 1 Score: 109.768 bits (273), Expect = 1.698e-32
Identity = 50/98 (51.02%), Postives = 72/98 (73.47%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TIN+HKR+HG+ FK RAPRA+KEIKKFA+  MGTEDVR+   LN+ +W +G++ V Y++R+R++RK+NE+ED+ +  ++ V  V     K   TV VE
Sbjct:   13 TINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTEDVRLAPELNQAIWKRGVKGVEYRLRLRISRKRNEEEDAKNPLFSYVEPVLVASAKGLQTVVVE 110

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Yeast
Match: RPL31A (Ribosomal 60S subunit protein L31A; associates with karyopherin Sxm1p; loss of both Rpl31p and Rpl39p confers lethality; homologous to mammalian ribosomal protein L31, no bacterial homolog; RPL31A has a paralog, RPL31B, that arose from the whole genome duplication [Source:SGD;Acc:S000002233])

HSP 1 Score: 108.227 bits (269), Expect = 6.774e-32
Identity = 49/98 (50.00%), Postives = 72/98 (73.47%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TIN+HKR+HG+ FK RAPRA+KEIKKFA+  MGT+DVR+   LN+ +W +G++ V Y++R+R++RK+NE+ED+ +  ++ V  V     K   TV VE
Sbjct:   13 TINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVKGVEYRLRLRISRKRNEEEDAKNPLFSYVEPVLVASAKGLQTVVVE 110

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Nematostella
Match: EDO40486 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S786])

HSP 1 Score: 155.221 bits (391), Expect = 6.697e-50
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TIN+HKRIHGIGFK RAPRAIKEI+KFA+K MGT DVR+D RLNK VW++GIRNVPY+VRVRLARK+NEDEDSPHK YTLVT V  + FK   T  VE
Sbjct:   23 TINLHKRIHGIGFKKRAPRAIKEIRKFAEKMMGTPDVRIDTRLNKHVWNQGIRNVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVE 120

[Close]

BLAST of 60S ribosomal protein L31 vs. Ensembl Medaka
Match: rpl31 (ribosomal protein L31 [Source:NCBI gene;Acc:101174896])

HSP 1 Score: 158.303 bits (399), Expect = 2.980e-50
Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 2

Query:  122 TINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            TINIHKRIHG+GFK RAPRAI EI+KFA K+MGT DVR+D RLNK VWSKG+RNVPY++RVRL+RK+NEDEDSP+K YTLVTYVP T  K   TVNV+
Sbjct:   48 TINIHKRIHGVGFKRRAPRAINEIRKFAMKEMGTPDVRIDTRLNKAVWSKGVRNVPYRMRVRLSRKRNEDEDSPNKLYTLVTYVPVTTCKGLQTVNVD 145

[Close]

BLAST of 60S ribosomal protein L31 vs. Planmine SMEST
Match: SMESG000017099.1 (SMESG000017099.1)

HSP 1 Score: 218.009 bits (554), Expect = 1.711e-74
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 2

Query:   62 MVNKNIDXXXXXXXXXXXXCTINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 415
            MVNKNIDKKSSKKETATKECTINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE
Sbjct:    1 MVNKNIDKKSSKKETATKECTINIHKRIHGIGFKHRAPRAIKEIKKFAQKQMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTLVTYVPCTDFKDKGTVNVE 118

The following BLAST results are available for this feature:

BLAST of 60S ribosomal protein L31 vs. Ensembl Human
BLAST of 60S ribosomal protein L31 vs. Ensembl Celegans
BLAST of 60S ribosomal protein L31 vs. Ensembl Fly
BLAST of 60S ribosomal protein L31 vs. Ensembl Zebrafish
BLAST of 60S ribosomal protein L31 vs. Ensembl Xenopus
BLAST of 60S ribosomal protein L31 vs. Ensembl Mouse
BLAST of 60S ribosomal protein L31 vs. UniProt/SwissProt
BLAST of 60S ribosomal protein L31 vs. TrEMBL
BLAST of 60S ribosomal protein L31 vs. Ensembl Cavefish
BLAST of 60S ribosomal protein L31 vs. Ensembl Sea Lamprey
BLAST of 60S ribosomal protein L31 vs. Ensembl Yeast
BLAST of 60S ribosomal protein L31 vs. Ensembl Nematostella
BLAST of 60S ribosomal protein L31 vs. Ensembl Medaka
BLAST of 60S ribosomal protein L31 vs. Planmine SMEST

BLAST of 60S ribosomal protein L31 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RPL31	1.385e-52	76.53	ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC...	[more]
RPL31	1.385e-52	76.53	ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC...	[more]
RPL31	9.954e-51	75.79	ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC...	[more]
RPL31	4.084e-50	78.89	ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC...	[more]
RPL31	8.133e-50	78.89	ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC...	[more]

BLAST of 60S ribosomal protein L31 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rpl-31	3.953e-39	70.41	60S ribosomal protein L31 [Source:UniProtKB/Swiss...	[more]
rpl-31	7.547e-23	68.66	60S ribosomal protein L31 [Source:UniProtKB/Swiss...	[more]
rpl-31	7.547e-23	68.66	60S ribosomal protein L31 [Source:UniProtKB/Swiss...	[more]
rpl-31	7.547e-23	68.66	60S ribosomal protein L31 [Source:UniProtKB/Swiss...	[more]
rpl-31	7.547e-23	68.66	60S ribosomal protein L31 [Source:UniProtKB/Swiss...	[more]

BLAST of 60S ribosomal protein L31 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3


Match Name	E-value	Identity	Description
RpL31	3.149e-40	66.67	gene:FBgn0285949 transcript:FBtr0088526	[more]
RpL31	3.149e-40	66.67	gene:FBgn0285949 transcript:FBtr0088527	[more]
RpL31	3.149e-40	66.67	gene:FBgn0285949 transcript:FBtr0088525	[more]

BLAST of 60S ribosomal protein L31 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
rpl31	2.198e-50	74.49	ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-06...	[more]
rpl31	2.198e-50	74.49	ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-06...	[more]

BLAST of 60S ribosomal protein L31 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ankle1	1.602e-50	75.51	ankyrin repeat and LEM domain containing 1 [Source...	[more]
ankle1	4.075e-48	77.78	ankyrin repeat and LEM domain containing 1 [Source...	[more]
ankle1	4.635e-48	77.78	ankyrin repeat and LEM domain containing 1 [Source...	[more]

BLAST of 60S ribosomal protein L31 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rpl31	9.509e-53	76.53	ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2...	[more]
Rpl31	9.509e-53	76.53	ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2...	[more]
Rpl31	9.509e-53	76.53	ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2...	[more]
Rpl31	1.192e-50	78.26	ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2...	[more]
Rpl31	2.275e-25	79.25	ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2...	[more]

BLAST of 60S ribosomal protein L31 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P62902\|RL31_RAT	6.651e-52	76.53	60S ribosomal protein L31 OS=Rattus norvegicus OX=...	[more]
sp\|P62901\|RL31_PIG	6.651e-52	76.53	60S ribosomal protein L31 OS=Sus scrofa OX=9823 GN...	[more]
sp\|P62900\|RL31_MOUSE	6.651e-52	76.53	60S ribosomal protein L31 OS=Mus musculus OX=10090...	[more]
sp\|Q1KSC7\|RL31_MARMO	6.651e-52	76.53	60S ribosomal protein L31 OS=Marmota monax OX=9995...	[more]
sp\|P62899\|RL31_HUMAN	6.651e-52	76.53	60S ribosomal protein L31 OS=Homo sapiens OX=9606 ...	[more]

BLAST of 60S ribosomal protein L31 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A183A0L3	1.681e-53	82.65	Uncharacterized protein OS=Echinostoma caproni OX=...	[more]
W6US36	3.284e-53	78.57	60S ribosomal protein L31 OS=Echinococcus granulos...	[more]
A0A0R3U492	9.490e-53	77.55	Uncharacterized protein OS=Mesocestoides corti OX=...	[more]
A0A068YF97	1.710e-52	78.57	Ribosomal protein L31 OS=Echinococcus multilocular...	[more]
T1FM36	1.789e-52	81.63	Uncharacterized protein OS=Helobdella robusta OX=6...	[more]

BLAST of 60S ribosomal protein L31 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
rpl31	6.639e-51	74.49	ribosomal protein L31 [Source:NCBI gene;Acc:103040...	[more]

BLAST of 60S ribosomal protein L31 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
rpl31	1.420e-53	76.53	ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-06...	[more]

BLAST of 60S ribosomal protein L31 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
RPL31B	1.698e-32	51.02	Ribosomal 60S subunit protein L31B; associates wit...	[more]
RPL31A	6.774e-32	50.00	Ribosomal 60S subunit protein L31A; associates wit...	[more]

BLAST of 60S ribosomal protein L31 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO40486	6.697e-50	75.51	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of 60S ribosomal protein L31 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1


Match Name	E-value	Identity	Description
rpl31	2.980e-50	75.51	ribosomal protein L31 [Source:NCBI gene;Acc:101174...	[more]

BLAST of 60S ribosomal protein L31 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1


Match Name	E-value	Identity	Description
SMESG000017099.1	1.711e-74	100.00	SMESG000017099.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30024189 ID=SMED30024189|Name=60S ribosomal protein L31|organism=Schmidtea mediterranea sexual|type=transcript|length=443bp
CATTTTTGTTTAAATTTTTAAATTTCATTTAAACTAGACATATTTGAATT
ACTATTCGAAAATGGTTAATAAAAATATAGATAAAAAGTCTAGCAAGAAA
GAGACTGCAACCAAAGAATGCACTATTAACATCCATAAAAGAATTCATGG
TATTGGATTTAAACACCGAGCCCCAAGAGCAATTAAGGAAATTAAGAAAT
TTGCTCAAAAACAAATGGGCACTGAAGATGTCCGTGTCGACGTTAGACTT
AACAAATTTGTTTGGAGCAAGGGTATCAGGAACGTACCTTACAAGGTTCG
TGTGCGATTAGCAAGAAAGAAGAATGAAGATGAAGACAGTCCTCATAAAA
CTTACACTTTGGTCACATACGTTCCATGCACTGATTTCAAAGACAAAGGC
ACTGTCAATGTCGAATAAATAAATATATTTCGATTGGATTTTT

protein sequence of SMED30024189-orf-1

>SMED30024189-orf-1 ID=SMED30024189-orf-1|Name=SMED30024189-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=119bp
MVNKNIDKKSSKKETATKECTINIHKRIHGIGFKHRAPRAIKEIKKFAQK
QMGTEDVRVDVRLNKFVWSKGIRNVPYKVRVRLARKKNEDEDSPHKTYTL
VTYVPCTDFKDKGTVNVE*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0000418	head
PLANA:0000429	neoblast
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR000054	Ribosomal_L31e
IPR023621	Ribosomal_L31e_dom_sf
IPR020052	Ribosomal_L31e_CS

Vocabulary: **biological process**
Term	Definition
GO:0006412	translation

Vocabulary: **molecular function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **cellular component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000054	Ribosomal protein L31e	SMART	SM01380	Ribosomal_L31e_2	coord: 13..96 e-value: 1.6E-50 score: 183.8
IPR000054	Ribosomal protein L31e	PFAM	PF01198	Ribosomal_L31e	coord: 15..94 e-value: 8.4E-45 score: 150.9
IPR000054	Ribosomal protein L31e	PANTHER	PTHR10956	60S RIBOSOMAL PROTEIN L31	coord: 9..113
IPR000054	Ribosomal protein L31e	CDD	cd00463	Ribosomal_L31e	coord: 12..95 e-value: 1.27158E-31 score: 104.959
IPR023621	Ribosomal protein L31e domain superfamily	GENE3D	G3DSA:3.10.440.10		coord: 1..117 e-value: 2.4E-51 score: 174.5
IPR023621	Ribosomal protein L31e domain superfamily	SUPERFAMILY	SSF54575	Ribosomal protein L31e	coord: 15..96
None	No IPR available	PANTHER	PTHR10956:SF32		coord: 9..113
None	No IPR available	PRODOM	PD006030		coord: 21..67 e-value: 4.0E-16 score: 201.0
IPR020052	Ribosomal protein L31e, conserved site	PROSITE	PS01144	RIBOSOMAL_L31E	coord: 57..71