Si:dkey-260c8.8

Overview
NameSi:dkey-260c8.8
Smed IDSMED30024156
Length (bp)1423
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Si:dkey-260c8.8 (SMED30024156) t-SNE clustered cells

Violin plots show distribution of expression levels for Si:dkey-260c8.8 (SMED30024156) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Si:dkey-260c8.8 (SMED30024156) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Si:dkey-260c8.8 (SMED30024156) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30024156

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30024156SMESG000069704.1 SmedASXL_017178SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Human
Match: HROB (homologous recombination factor with OB-fold [Source:HGNC Symbol;Acc:HGNC:28460])

HSP 1 Score: 91.2781 bits (225), Expect = 6.944e-19
Identity = 55/187 (29.41%), Postives = 94/187 (50.27%), Query Frame = 3 
Query:  582 QKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSE-TWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGDED 1130
            ++FPGPAG LP     +  S++ D   +  Q P    +   ++     S  S + ++    W   +  LG    +       Y++  V +K      LP +K+P + +++  +    MDA  +  D TG ++  +HR +LET   +LK GSVL+LK++ +FSPS + +Y N+T +N+  I SP   D
Sbjct:  396 RRFPGPAGILPH--QQSGRSLE-DIMVSAPQTPTHGALAKFQTEIVASSQASVEEDFGRGPWLTMKSTLGLDERDPSCFLCTYSIVMVLRKQAALKQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMQGTVHRLLLETCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSGD 579
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Human
Match: HROB (homologous recombination factor with OB-fold [Source:HGNC Symbol;Acc:HGNC:28460])

HSP 1 Score: 87.0409 bits (214), Expect = 1.593e-17
Identity = 55/187 (29.41%), Postives = 94/187 (50.27%), Query Frame = 3 
Query:  582 QKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSE-TWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGDED 1130
            ++FPGPAG LP     +  S++ D   +  Q P    +   ++     S  S + ++    W   +  LG    +       Y++  V +K      LP +K+P + +++  +    MDA  +  D TG ++  +HR +LET   +LK GSVL+LK++ +FSPS + +Y N+T +N+  I SP   D
Sbjct:  396 RRFPGPAGILPH--QQSGRSLE-DIMVSAPQTPTHGALAKFQTEIVASSQASVEEDFGRGPWLTMKSTLGLDERDPSCFLCTYSIVMVLRKAAL-KQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMQGTVHRLLLETCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSGD 578
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Human
Match: HROB (homologous recombination factor with OB-fold [Source:HGNC Symbol;Acc:HGNC:28460])

HSP 1 Score: 79.7221 bits (195), Expect = 3.096e-15
Identity = 35/90 (38.89%), Postives = 57/90 (63.33%), Query Frame = 3 
Query:  861 LPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGDED 1130
            LP +K+P + +++  +    MDA  +  D TG ++  +HR +LET   +LK GSVL+LK++ +FSPS + +Y N+T +N+  I SP   D
Sbjct:  414 LPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMQGTVHRLLLETCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSGD 503
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Zebrafish
Match: si:dkey-260c8.8 (si:dkey-260c8.8 [Source:ZFIN;Acc:ZDB-GENE-030131-5375])

HSP 1 Score: 86.2705 bits (212), Expect = 1.490e-17
Identity = 58/187 (31.02%), Postives = 96/187 (51.34%), Query Frame = 3 
Query:  573 SNCQKFPGPAGNLPK-VSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSE-TWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISP 1118
            +  ++FPGPAG LP+ VS  +      D   +  Q P    +   ++     S  S + E+S   W + +  +G    N       Y++  V +K      L  +K+P + +VL  I +   DA A+  D TG ++  +HRQ++E    +LKTG+VL+LK+V +FSPS + +Y N+T +N+  I  P
Sbjct:  315 AKARRFPGPAGALPQQVSGQSL----DDIVVSVPQTPAHGAVARLRNEQVSSSQVSEEEEFSRGPWAVMKAEMGLDEKNPSCFLHSYSVVMVLRKAAL-RQLAKNKVPNMAVVLKSITHTHADAKAVFRDPTGEMQGTVHRQLVEERQGELKTGAVLLLKQVGVFSPSHRNHYLNVTPNNLLRIYPP 496
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Xenopus
Match: asb16 (ankyrin repeat and SOCS box containing 16 [Source:Xenbase;Acc:XB-GENE-987004])

HSP 1 Score: 86.2705 bits (212), Expect = 2.393e-17
Identity = 62/209 (29.67%), Postives = 108/209 (51.67%), Query Frame = 3 
Query:  582 QKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPE------RSNINTQKSRAKDFSNYSSQIEYSE-TWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGDEDWENR----PLISEAEI 1166
            ++FPGPAG LP    H F +V+G ++ + +  P       R+ ++T+ S A   S   ++ E+ +  W   +  L    N+     + Y++  V +K      LP +K+P + + L  +     DA A+  D TG I+  +H  +L+     LK GSVL+L++V +FSPS + +Y N+T +N+ +I  P +E    R    P+ SE ++
Sbjct:  314 RRFPGPAGLLP----HQF-NVRGLDEIS-VSTPHTPAHGARAKLSTKASLA---SQQPTEEEFGKGPWASLKAELALDENDPTCFLRTYSVVMVLRKAAL-KQLPKNKVPRMAVALKSLTPANGDASAVFRDHTGDIQGTVHHLLLDEKESDLKVGSVLLLQQVGVFSPSNRNHYLNVTPNNLVKIYPPEEEGTHARLEAPPVSSETDL 512
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Xenopus
Match: asb16 (ankyrin repeat and SOCS box containing 16 [Source:Xenbase;Acc:XB-GENE-987004])

HSP 1 Score: 85.8853 bits (211), Expect = 3.018e-17
Identity = 62/209 (29.67%), Postives = 108/209 (51.67%), Query Frame = 3 
Query:  582 QKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPE------RSNINTQKSRAKDFSNYSSQIEYSE-TWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGDEDWENR----PLISEAEI 1166
            ++FPGPAG LP    H F+ V+G ++ + +  P       R+ ++T+ S A   S   ++ E+ +  W   +  L    N+     + Y++  V +K      LP +K+P + + L  +     DA A+  D TG I+  +H  +L+     LK GSVL+L++V +FSPS + +Y N+T +N+ +I  P +E    R    P+ SE ++
Sbjct:  310 RRFPGPAGLLP----HQFN-VRGLDEIS-VSTPHTPAHGARAKLSTKASLA---SQQPTEEEFGKGPWASLKAELALDENDPTCFLRTYSVVMVLRKAAL-KQLPKNKVPRMAVALKSLTPANGDASAVFRDHTGDIQGTVHHLLLDEKESDLKVGSVLLLQQVGVFSPSNRNHYLNVTPNNLVKIYPPEEEGTHARLEAPPVSSETDL 508
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Mouse
Match: BC030867 (cDNA sequence BC030867 [Source:MGI Symbol;Acc:MGI:2387601])

HSP 1 Score: 87.0409 bits (214), Expect = 8.881e-18
Identity = 57/201 (28.36%), Postives = 98/201 (48.76%), Query Frame = 3 
Query:  573 SNCQKFPGPAGNLPKVSNHNFHSVQGDN----KFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSE-TWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIIS--PGDEDWENRP 1145
            +  ++FPGPAG LP       H   G+N      +  Q P    +   ++     S  S + ++ +  W   +  LG    +       Y++  V +K      LP +K+P + +++  +    MDA  +  D TG +   +HR +LET+  +L+ GSVL+LK++ +FSPS + +Y N+T +N+  I S   GD D+   P
Sbjct:  359 AKTRRFPGPAGLLP-------HQHSGENLEEIMVSTPQTPTHGALAKFQTEIATSSQGSVEEDFGQGPWLTMKSALGLDEGDPTCFLYTYSIVMVLRKAAL-KQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMLGTVHRVLLETHQSELRPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSLDSGDGDFLEPP 551
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Mouse
Match: BC030867 (cDNA sequence BC030867 [Source:MGI Symbol;Acc:MGI:2387601])

HSP 1 Score: 87.0409 bits (214), Expect = 9.444e-18
Identity = 57/201 (28.36%), Postives = 98/201 (48.76%), Query Frame = 3 
Query:  573 SNCQKFPGPAGNLPKVSNHNFHSVQGDN----KFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSE-TWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIIS--PGDEDWENRP 1145
            +  ++FPGPAG LP       H   G+N      +  Q P    +   ++     S  S + ++ +  W   +  LG    +       Y++  V +K      LP +K+P + +++  +    MDA  +  D TG +   +HR +LET+  +L+ GSVL+LK++ +FSPS + +Y N+T +N+  I S   GD D+   P
Sbjct:  359 AKTRRFPGPAGLLP-------HQHSGENLEEIMVSTPQTPTHGALAKFQTEIATSSQGSVEEDFGQGPWLTMKSALGLDEGDPTCFLYTYSIVMVLRKAAL-KQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMLGTVHRVLLETHQSELRPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSLDSGDGDFLEPP 551
[Close]
BLAST of Si:dkey-260c8.8 vs. UniProt/SwissProt
Match: sp|Q8N3J3|HROB_HUMAN (Homologous recombination OB-fold protein OS=Homo sapiens OX=9606 GN=HROB PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.335e-18
Identity = 55/187 (29.41%), Postives = 94/187 (50.27%), Query Frame = 3 
Query:  582 QKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSE-TWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGDED 1130
            ++FPGPAG LP     +  S++ D   +  Q P    +   ++     S  S + ++    W   +  LG    +       Y++  V +K      LP +K+P + +++  +    MDA  +  D TG ++  +HR +LET   +LK GSVL+LK++ +FSPS + +Y N+T +N+  I SP   D
Sbjct:  396 RRFPGPAGILPH--QQSGRSLE-DIMVSAPQTPTHGALAKFQTEIVASSQASVEEDFGRGPWLTMKSTLGLDERDPSCFLCTYSIVMVLRKQAALKQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMQGTVHRLLLETCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSGD 579
[Close]
BLAST of Si:dkey-260c8.8 vs. UniProt/SwissProt
Match: sp|Q32P12|HROB_MOUSE (Homologous recombination OB-fold protein OS=Mus musculus OX=10090 GN=Hrob PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.212e-17
Identity = 57/201 (28.36%), Postives = 98/201 (48.76%), Query Frame = 3 
Query:  573 SNCQKFPGPAGNLPKVSNHNFHSVQGDN----KFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSE-TWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIIS--PGDEDWENRP 1145
            +  ++FPGPAG LP       H   G+N      +  Q P    +   ++     S  S + ++ +  W   +  LG    +       Y++  V +K      LP +K+P + +++  +    MDA  +  D TG +   +HR +LET+  +L+ GSVL+LK++ +FSPS + +Y N+T +N+  I S   GD D+   P
Sbjct:  359 AKTRRFPGPAGLLP-------HQHSGENLEEIMVSTPQTPTHGALAKFQTEIATSSQGSVEEDFGQGPWLTMKSALGLDEGDPTCFLYTYSIVMVLRKAAL-KQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMLGTVHRVLLETHQSELRPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSLDSGDGDFLEPP 551
[Close]
BLAST of Si:dkey-260c8.8 vs. UniProt/SwissProt
Match: sp|Q6GX86|HROB_RAT (Homologous recombination OB-fold protein OS=Rattus norvegicus OX=10116 GN=Hrob PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.356e-16
Identity = 58/198 (29.29%), Postives = 96/198 (48.48%), Query Frame = 3 
Query:  582 QKFPGPAGNLPKVSNHNFHSVQGDN----KFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSE-TWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIIS--PGDEDWENRP 1145
            ++FPGPAG LP       H   G+N      +  Q P    +   ++     S  S + ++    W   +  LG    +       Y++  V +K      LP +K+P + +++  +    MDA  +  D TG +   +HR +LET+  +LK GSVL+LK++ +FSPS + +Y N+T +N+  I S   GD D+   P
Sbjct:  345 RRFPGPAGLLP-------HQHSGENLEEIMVSTPQTPTHGALAKFQTEIVTSSQGSVEEDFGRGPWLTMKSALGLDEGDPTCFLYTYSIVMVLRKAAL-KQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMLGTVHRVLLETHQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSLDSGDGDFLKPP 534
[Close]
BLAST of Si:dkey-260c8.8 vs. TrEMBL
Match: A0A4S2LNQ3 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_005900 PE=4 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.003e-28
Identity = 74/219 (33.79%), Postives = 115/219 (52.51%), Query Frame = 3 
Query:  567 NSSNCQKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSETWKMTRQILGNNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGD------------EDWENRPLISEAEIEHLITEC 1187
            N+S  ++ PGPAG LP+               ++ +KP   ++    S      + +S  E SE     +   G   W   +KY++ NV ++      LP  K+P++C  L ++E +P DA  +L D+TGS+ C IHR V++TY E+L    +L+LK+VS+FSP+GKK+Y N+T SNI  + +PG             +  +N P  S AE E L +EC
Sbjct:   74 NTSRRKRLPGPAGMLPQSGGTELK--LDIPHGSRHKKPNVGSVQCDPSSHSLSQSIASDTEESELMNRIQHDCGPVIWPLVEKYSIANVLQQITR-GLLPRGKVPVMCGFLDDVELLPTDAKGVLKDKTGSLGCTIHRSVIKTYKEQLTNCVLLLLKQVSLFSPTGKKFYVNLTLSNIIRVYTPGQTFPALTSSRSVSQPLKNPPF-SPAEFETLESEC 288
[Close]
BLAST of Si:dkey-260c8.8 vs. TrEMBL
Match: A0A4S2LNR5 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_005900 PE=4 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.715e-28
Identity = 74/219 (33.79%), Postives = 115/219 (52.51%), Query Frame = 3 
Query:  567 NSSNCQKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSETWKMTRQILGNNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGD------------EDWENRPLISEAEIEHLITEC 1187
            N+S  ++ PGPAG LP+               ++ +KP   ++    S      + +S  E SE     +   G   W   +KY++ NV ++      LP  K+P++C  L ++E +P DA  +L D+TGS+ C IHR V++TY E+L    +L+LK+VS+FSP+GKK+Y N+T SNI  + +PG             +  +N P  S AE E L +EC
Sbjct:   61 NTSRRKRLPGPAGMLPQSGGTELK--LDIPHGSRHKKPNVGSVQCDPSSHSLSQSIASDTEESELMNRIQHDCGPVIWPLVEKYSIANVLQQITR-GLLPRGKVPVMCGFLDDVELLPTDAKGVLKDKTGSLGCTIHRSVIKTYKEQLTNCVLLLLKQVSLFSPTGKKFYVNLTLSNIIRVYTPGQTFPALTSSRSVSQPLKNPPF-SPAEFETLESEC 275
[Close]
BLAST of Si:dkey-260c8.8 vs. TrEMBL
Match: A0A4S2LNS3 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_005900 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.887e-28
Identity = 74/219 (33.79%), Postives = 115/219 (52.51%), Query Frame = 3 
Query:  567 NSSNCQKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSETWKMTRQILGNNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGD------------EDWENRPLISEAEIEHLITEC 1187
            N+S  ++ PGPAG LP+               ++ +KP   ++    S      + +S  E SE     +   G   W   +KY++ NV ++      LP  K+P++C  L ++E +P DA  +L D+TGS+ C IHR V++TY E+L    +L+LK+VS+FSP+GKK+Y N+T SNI  + +PG             +  +N P  S AE E L +EC
Sbjct:   74 NTSRRKRLPGPAGMLPQSGGTELK--LDIPHGSRHKKPNVGSVQCDPSSHSLSQSIASDTEESELMNRIQHDCGPVIWPLVEKYSIANVLQQITR-GLLPRGKVPVMCGFLDDVELLPTDAKGVLKDKTGSLGCTIHRSVIKTYKEQLTNCVLLLLKQVSLFSPTGKKFYVNLTLSNIIRVYTPGQTFPALTSSRSVSQPLKNPPF-SPAEFETLESEC 288
[Close]
BLAST of Si:dkey-260c8.8 vs. TrEMBL
Match: A0A4S2LUU9 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_005900 PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.807e-28
Identity = 74/219 (33.79%), Postives = 115/219 (52.51%), Query Frame = 3 
Query:  567 NSSNCQKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSETWKMTRQILGNNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGD------------EDWENRPLISEAEIEHLITEC 1187
            N+S  ++ PGPAG LP+               ++ +KP   ++    S      + +S  E SE     +   G   W   +KY++ NV ++      LP  K+P++C  L ++E +P DA  +L D+TGS+ C IHR V++TY E+L    +L+LK+VS+FSP+GKK+Y N+T SNI  + +PG             +  +N P  S AE E L +EC
Sbjct:   80 NTSRRKRLPGPAGMLPQSGGTELK--LDIPHGSRHKKPNVGSVQCDPSSHSLSQSIASDTEESELMNRIQHDCGPVIWPLVEKYSIANVLQQITR-GLLPRGKVPVMCGFLDDVELLPTDAKGVLKDKTGSLGCTIHRSVIKTYKEQLTNCVLLLLKQVSLFSPTGKKFYVNLTLSNIIRVYTPGQTFPALTSSRSVSQPLKNPPF-SPAEFETLESEC 294
[Close]
BLAST of Si:dkey-260c8.8 vs. TrEMBL
Match: A0A4S2LVQ9 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_005900 PE=4 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.457e-28
Identity = 74/219 (33.79%), Postives = 115/219 (52.51%), Query Frame = 3 
Query:  567 NSSNCQKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSETWKMTRQILGNNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGD------------EDWENRPLISEAEIEHLITEC 1187
            N+S  ++ PGPAG LP+               ++ +KP   ++    S      + +S  E SE     +   G   W   +KY++ NV ++      LP  K+P++C  L ++E +P DA  +L D+TGS+ C IHR V++TY E+L    +L+LK+VS+FSP+GKK+Y N+T SNI  + +PG             +  +N P  S AE E L +EC
Sbjct:   83 NTSRRKRLPGPAGMLPQSGGTELK--LDIPHGSRHKKPNVGSVQCDPSSHSLSQSIASDTEESELMNRIQHDCGPVIWPLVEKYSIANVLQQITR-GLLPRGKVPVMCGFLDDVELLPTDAKGVLKDKTGSLGCTIHRSVIKTYKEQLTNCVLLLLKQVSLFSPTGKKFYVNLTLSNIIRVYTPGQTFPALTSSRSVSQPLKNPPF-SPAEFETLESEC 297
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Cavefish
Match: si:dkey-260c8.8 (homologous recombination factor with OB-fold [Source:NCBI gene;Acc:103043013])

HSP 1 Score: 90.8929 bits (224), Expect = 4.252e-19
Identity = 58/203 (28.57%), Postives = 100/203 (49.26%), Query Frame = 3 
Query:  582 QKFPGPAGNLPK-VSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSETWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGDE----DWENRPLISEAEI 1166
            ++FPGPAG LP+ +S  N      D   +  Q P    +   ++   +  +   +      W   +  +G    N       Y++  V +K      L  +K+P + +VL  I +   DA A+  D TG I+  +HR++LE    +LKTG+VL+LK+V +FSPS + +Y N+T +N+ +I  P          ++PL++ A +
Sbjct:  334 RRFPGPAGALPQQISRQNLD----DIVVSVPQTPAHGAVARLRNEVSNSQSSEEEEFSGGPWAAMKAEMGLDERNPSCFLHSYSIVMVLRKAAL-RQLTKNKVPNMAVVLKSILHTHADAKAVFRDPTGEIQGTLHRRLLEDRQGELKTGAVLLLKQVGVFSPSHRNHYLNVTPNNLLKIYPPDGSPLGFSQHSQPLLAAAGV 531
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Cavefish
Match: si:dkey-260c8.8 (homologous recombination factor with OB-fold [Source:NCBI gene;Acc:103043013])

HSP 1 Score: 90.8929 bits (224), Expect = 4.256e-19
Identity = 58/203 (28.57%), Postives = 100/203 (49.26%), Query Frame = 3 
Query:  582 QKFPGPAGNLPK-VSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSETWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGDEDW----ENRPLISEAEI 1166
            ++FPGPAG LP+ +S  N      D   +  Q P    +   ++   +  +   +      W   +  +G    N       Y++  V +K      L  +K+P + +VL  I +   DA A+  D TG I+  +HR++LE    +LKTG+VL+LK+V +FSPS + +Y N+T +N+ +I  P          ++PL++ A +
Sbjct:  330 RRFPGPAGALPQQISRQNLD----DIVVSVPQTPAHGAVARLRNEVSNSQSSEEEEFSGGPWAAMKAEMGLDERNPSCFLHSYSIVMVLRKAAL-RQLTKNKVPNMAVVLKSILHTHADAKAVFRDPTGEIQGTLHRRLLEDRQGELKTGAVLLLKQVGVFSPSHRNHYLNVTPNNLLKIYPPDGSPLGFSQHSQPLLAAAGV 527
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006297.1 (pep scaffold:Pmarinus_7.0:GL479168:17833:19886:1 gene:ENSPMAG00000005690.1 transcript:ENSPMAT00000006297.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 80.4925 bits (197), Expect = 1.319e-17
Identity = 53/194 (27.32%), Postives = 87/194 (44.85%), Query Frame = 3 
Query:  537 TDKSSHGSVKNSSNCQKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSETWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEI 1109
            T + S  +       ++FPGPAG LP+  +        D   +  Q P    +    S      +   +      W   +  LG    N       +++  V +K      LP  K+PI+C++L  +     DA A+  D TG ++  IHRQ++E +  +L+ G VL L++V + SPS + +Y NIT  N+  I
Sbjct:   45 TPRPSPAAPSAVPKARRFPGPAGLLPQQLSRKMD----DIMISAPQTPAHGAVAKLSSLPSSQQSSFEEDFGRGPWVAMKAALGVDERNPSSFLCTHSIIMVLRKASL-KQLPKGKVPIMCILLKSLVQTGSDAKAVFKDPTGEMQGTIHRQLVEQHQSQLRAGVVLHLQQVGVLSPSCRNHYLNITPRNVVRI 233
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Nematostella
Match: EDO37571 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SFF9])

HSP 1 Score: 97.8265 bits (242), Expect = 8.987e-22
Identity = 66/188 (35.11%), Postives = 99/188 (52.66%), Query Frame = 3 
Query:  582 QKFPGPAGNLPK------VSNHNFHSVQGDNKFTK--IQKPERSNINTQKSRAKDFSNYSSQIEYSETW-KMTRQILGNNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISP 1118
            +KFPGPAG LPK      ++  N  +V   ++ T   IQ P    +    S  +DF+         + W  M ++ + N       +Y +  V K+    N L + K+P +C+++     +  DA  +L D TG I   +HR+VLE Y  +L TG+ LILK+VS+FSPS +K+Y NIT  NI +I SP
Sbjct:  303 RKFPGPAGLLPKLTPGQNIAESNVPNVSPISRRTSPTIQTP----VLQSSSEDEDFNR--------DPWLSMYKEFIEN--APSVMRYTVGKVLKEAAAQN-LKHGKVPCLCVLMKTFSPIGADASILLKDPTGEIHGTLHRKVLEEYQTELGTGAGLILKQVSVFSPSPRKHYLNITPGNILQIFSP 475
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Medaka
Match: si:dkey-260c8.8 (homologous recombination factor with OB-fold [Source:NCBI gene;Acc:101164483])

HSP 1 Score: 84.7297 bits (208), Expect = 4.291e-17
Identity = 57/197 (28.93%), Postives = 95/197 (48.22%), Query Frame = 3 
Query:  582 QKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNIN----------TQKSRAKDFSNYS-SQIEYSE----TWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISP 1118
            ++FPGPAG LP                   Q+P+  N++             + A+  S  S SQ E  E     W   +  +G    N       Y++  V +K      L  +K+P + ++L  I +   DA A+  D TG ++  +HR++LE  +E+L+ G+VL+LK+V +FSPS + +Y N+T +N+  I +P
Sbjct:  300 RRFPGPAGLLP-------------------QQPQAQNLDQIVVSVPKTPAHGAAARPPSQASCSQTEEEEFSAGGWAAMKAEMGLDERNPSCFLHSYSVVMVLRKAAL-KQLARNKVPNMAVLLKSIIHTNADAKAVFRDPTGEMQGTVHRRLLEERAEELRVGAVLLLKQVGVFSPSHRNHYLNVTPNNLLRIYAP 476
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Medaka
Match: si:dkey-260c8.8 (homologous recombination factor with OB-fold [Source:NCBI gene;Acc:101164483])

HSP 1 Score: 81.6481 bits (200), Expect = 3.674e-16
Identity = 56/197 (28.43%), Postives = 93/197 (47.21%), Query Frame = 3 
Query:  582 QKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNIN-----TQKSRAKD------FSNYSSQIEYSE----TWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISP 1118
            ++FPGPAG LP                   Q+P+  N++       K+ A             SQ E  E     W   +  +G    N       Y++  V +K      L  +K+P + ++L  I +   DA A+  D TG ++  +HR++LE  +E+L+ G+VL+LK+V +FSPS + +Y N+T +N+  I +P
Sbjct:  325 RRFPGPAGLLP-------------------QQPQAQNLDQIVVSVPKTPAHGAAVGFLLQASCSQTEEEEFSAGGWAAMKAEMGLDERNPSCFLHSYSVVMVLRKAAL-KQLARNKVPNMAVLLKSIIHTNADAKAVFRDPTGEMQGTVHRRLLEERAEELRVGAVLLLKQVGVFSPSHRNHYLNVTPNNLLRIYAP 501
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Medaka
Match: si:dkey-260c8.8 (homologous recombination factor with OB-fold [Source:NCBI gene;Acc:101164483])

HSP 1 Score: 78.9518 bits (193), Expect = 2.662e-15
Identity = 33/86 (38.37%), Postives = 58/86 (67.44%), Query Frame = 3 
Query:  861 LPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISP 1118
            L  +K+P + ++L  I +   DA A+  D TG ++  +HR++LE  +E+L+ G+VL+LK+V +FSPS + +Y N+T +N+  I +P
Sbjct:  346 LARNKVPNMAVLLKSIIHTNADAKAVFRDPTGEMQGTVHRRLLEERAEELRVGAVLLLKQVGVFSPSHRNHYLNVTPNNLLRIYAP 431
[Close]
BLAST of Si:dkey-260c8.8 vs. Ensembl Medaka
Match: si:dkey-260c8.8 (homologous recombination factor with OB-fold [Source:NCBI gene;Acc:101164483])

HSP 1 Score: 55.8398 bits (133), Expect = 5.958e-8
Identity = 46/172 (26.74%), Postives = 77/172 (44.77%), Query Frame = 3 
Query:  582 QKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNIN----------TQKSRAKDFSNYS-SQIEYSE----TWKMTRQILG---NNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKV 1043
            ++FPGPAG LP                   Q+P+  N++             + A+  S  S SQ E  E     W   +  +G    N       Y++  V +K      L  +K+P + ++L  I +   DA A+  D TG ++  +HR++LE  +E+L+ G+VL+LK+ 
Sbjct:  300 RRFPGPAGLLP-------------------QQPQAQNLDQIVVSVPKTPAHGAAARPPSQASCSQTEEEEFSAGGWAAMKAEMGLDERNPSCFLHSYSVVMVLRKAAL-KQLARNKVPNMAVLLKSIIHTNADAKAVFRDPTGEMQGTVHRRLLEERAEELRVGAVLLLKQT 451
[Close]
BLAST of Si:dkey-260c8.8 vs. Planmine SMEST
Match: SMESG000069704.1 (SMESG000069704.1)

HSP 1 Score: 830.861 bits (2145), Expect = 0.000e+0
Identity = 404/409 (98.78%), Postives = 406/409 (99.27%), Query Frame = 3 
Query:  159 DRGTLSFGIGTSSDKRDEIYLPKRLCLENPQLQSQISILSKANDTQSIKDYQEKHSNTLKLQSLIHKNISPKHDNDSPSYSPITSTQKERNSSNMAYLFDSTNKISPIKIKPGICSELRKPGSLFPTDKSSHGSVKNSSNCQKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSETWKMTRQILGNNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGDEDWENRPLISEAEIEHLITECSEIPKIIFNPESLLKGTTTGAAVSHLGNPQIAPPIIPDRKQIEFFDDEMDEFLVSFMDESFGGDNL 1385
            DRGTLSFGIGTSSDKRDEIYLPKRLCLENPQLQSQISILSKANDTQ+IKDYQEKHSNTLKLQSLIHKNISPKHDNDSPSYSPITSTQKERN+ NM YLFDSTNKISPIKIKPGICSELRKPGSLFPTDKSSHGSVKNSSNCQKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSETWKMTRQILGNNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGDEDWENRPLISEAEIEHLITECSEIPKIIFNPESL KGTTTGAAVSHLGNPQIAPPIIPDRKQIEFFDDEMDEFLVSFMDESFGGDNL
Sbjct:   32 DRGTLSFGIGTSSDKRDEIYLPKRLCLENPQLQSQISILSKANDTQNIKDYQEKHSNTLKLQSLIHKNISPKHDNDSPSYSPITSTQKERNTCNMGYLFDSTNKISPIKIKPGICSELRKPGSLFPTDKSSHGSVKNSSNCQKFPGPAGNLPKVSNHNFHSVQGDNKFTKIQKPERSNINTQKSRAKDFSNYSSQIEYSETWKMTRQILGNNRWMKFQKYNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIRCAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIISPGDEDWENRPLISEAEIEHLITECSEIPKIIFNPESLFKGTTTGAAVSHLGNPQIAPPIIPDRKQIEFFDDEMDEFLVSFMDESFGGDNL 440
[Close]
BLAST of Si:dkey-260c8.8 vs. Planmine SMEST
Match: SMESG000069706.1 (SMESG000069706.1)

HSP 1 Score: 196.438 bits (498), Expect = 1.294e-60
Identity = 106/153 (69.28%), Postives = 115/153 (75.16%), Query Frame = 3 
Query:  159 DRGTLSFGIGTSSDKRDEIYLPKRLCLENPQLQSQISILSKANDTQSIKDYQEKHSNTLKLQSLIHKNISPKHDNDSPSYSPITSTQKERNSSNMAYLFDSTNKISPIKIKPGICSELRKPGSLFPTDKSSHGSVKNSSNCQKFPGPAGNLPK 617
            DRG L+FG G  SDKR++I+LPK+LCLEN    +++                        L S IHKNIS KHDNDS SYS ITSTQKERN+SNMAYLFDSTNKISPIKIKPGICSELRKPG LFPTDKSSHGSVKNSSNCQKFPGPAGNLPK
Sbjct:   41 DRGILTFGTG--SDKRNKIWLPKKLCLEN-LFSAKL------------------------LHSFIHKNISSKHDNDS-SYSSITSTQKERNTSNMAYLFDSTNKISPIKIKPGICSELRKPGYLFPTDKSSHGSVKNSSNCQKFPGPAGNLPK 165
The following BLAST results are available for this feature:
BLAST of Si:dkey-260c8.8 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
HROB6.944e-1929.41homologous recombination factor with OB-fold [Sour... [more]
HROB1.593e-1729.41homologous recombination factor with OB-fold [Sour... [more]
HROB3.096e-1538.89homologous recombination factor with OB-fold [Sour... [more]
back to top
BLAST of Si:dkey-260c8.8 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Si:dkey-260c8.8 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Si:dkey-260c8.8 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
si:dkey-260c8.81.490e-1731.02si:dkey-260c8.8 [Source:ZFIN;Acc:ZDB-GENE-030131-5... [more]
back to top
BLAST of Si:dkey-260c8.8 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
asb162.393e-1729.67ankyrin repeat and SOCS box containing 16 [Source:... [more]
asb163.018e-1729.67ankyrin repeat and SOCS box containing 16 [Source:... [more]
back to top
BLAST of Si:dkey-260c8.8 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
BC0308678.881e-1828.36cDNA sequence BC030867 [Source:MGI Symbol;Acc:MGI:... [more]
BC0308679.444e-1828.36cDNA sequence BC030867 [Source:MGI Symbol;Acc:MGI:... [more]
back to top
BLAST of Si:dkey-260c8.8 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 3
Match NameE-valueIdentityDescription
sp|Q8N3J3|HROB_HUMAN3.335e-1829.41Homologous recombination OB-fold protein OS=Homo s... [more]
sp|Q32P12|HROB_MOUSE6.212e-1728.36Homologous recombination OB-fold protein OS=Mus mu... [more]
sp|Q6GX86|HROB_RAT1.356e-1629.29Homologous recombination OB-fold protein OS=Rattus... [more]
back to top
BLAST of Si:dkey-260c8.8 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4S2LNQ31.003e-2833.79Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A4S2LNR52.715e-2833.79Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A4S2LNS32.887e-2833.79Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A4S2LUU94.807e-2833.79Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A4S2LVQ97.457e-2833.79Uncharacterized protein OS=Opisthorchis felineus O... [more]
back to top
BLAST of Si:dkey-260c8.8 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
si:dkey-260c8.84.252e-1928.57homologous recombination factor with OB-fold [Sour... [more]
si:dkey-260c8.84.256e-1928.57homologous recombination factor with OB-fold [Sour... [more]
back to top
BLAST of Si:dkey-260c8.8 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000006297.11.319e-1727.32pep scaffold:Pmarinus_7.0:GL479168:17833:19886:1 g... [more]
back to top
BLAST of Si:dkey-260c8.8 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Si:dkey-260c8.8 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO375718.987e-2235.11Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of Si:dkey-260c8.8 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
si:dkey-260c8.84.291e-1728.93homologous recombination factor with OB-fold [Sour... [more]
si:dkey-260c8.83.674e-1628.43homologous recombination factor with OB-fold [Sour... [more]
si:dkey-260c8.82.662e-1538.37homologous recombination factor with OB-fold [Sour... [more]
si:dkey-260c8.85.958e-826.74homologous recombination factor with OB-fold [Sour... [more]
back to top
BLAST of Si:dkey-260c8.8 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000069704.10.000e+098.78SMESG000069704.1[more]
SMESG000069706.11.294e-6069.28SMESG000069706.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30024156 ID=SMED30024156|Name=Si:dkey-260c8.8|organism=Schmidtea mediterranea sexual|type=transcript|length=1423bp
TCAAATTCAAATATTTTGTATTAATAAAAATCTGCAATTTATATAGCGAT
TTAATTTTATGGTAGATGTTCAATCTAGACGATTTTGACGTTGATTTCAA
CGATGATATATTTGATGATTTCAAGTCTAAGTCGTCATTAAATCTAAATG
TATCTAGTGATAGAGGAACTTTGTCCTTCGGAATTGGTACAAGTTCTGAT
AAGCGAGATGAAATTTACTTACCTAAAAGACTTTGTTTGGAAAATCCACA
ATTACAAAGCCAAATATCTATTCTCAGCAAGGCTAATGATACTCAAAGTA
TAAAAGATTATCAAGAGAAACATTCCAATACCCTAAAGCTCCAGTCACTC
ATTCATAAAAACATATCTCCAAAGCATGATAATGATTCTCCTTCATATTC
ACCAATCACATCAACCCAAAAAGAAAGAAATTCCAGCAATATGGCATATT
TATTTGACAGTACCAACAAAATATCCCCAATTAAAATTAAACCTGGAATT
TGTAGTGAGTTAAGAAAACCAGGTTCTTTATTTCCTACTGATAAATCGTC
ACACGGATCTGTGAAGAACTCTTCTAACTGTCAGAAATTCCCAGGACCAG
CTGGTAATTTGCCAAAGGTATCGAATCATAACTTTCATTCAGTCCAGGGC
GATAATAAATTTACCAAAATCCAGAAACCAGAGAGAAGTAATATTAACAC
TCAAAAATCACGTGCGAAGGATTTTAGTAATTATTCCAGTCAAATTGAAT
ATTCTGAAACTTGGAAAATGACCAGACAAATTTTGGGAAATAATCGTTGG
ATGAAATTCCAAAAATATAACCTTGAAAACGTTTTTAAAAAGAATAAAGA
ACCGAATGGTTTACCAAATTCTAAAATACCTATTATTTGTCTCGTTCTCT
CTGAAATTGAATATATGCCGATGGACGCAGTTGCGATACTCTCTGATGAA
ACAGGATCAATAAGATGTGCTATTCATAGGCAAGTTCTTGAAACTTACAG
TGAAAAACTGAAAACTGGATCTGTATTGATTCTAAAAAAAGTGTCAATAT
TCTCGCCTTCGGGAAAGAAATACTATTTCAACATAACCAAGTCAAATATC
GCAGAGATTATTTCTCCTGGAGATGAAGATTGGGAAAATCGTCCATTGAT
CAGTGAGGCAGAAATAGAGCATTTAATAACCGAGTGCTCTGAAATTCCGA
AAATAATTTTCAACCCGGAATCTCTATTGAAGGGCACGACAACCGGAGCT
GCCGTTAGTCACCTTGGAAATCCACAAATTGCACCTCCCATCATTCCAGA
TAGAAAACAAATCGAGTTCTTTGATGACGAAATGGATGAATTCCTCGTCT
CGTTTATGGATGAATCATTTGGTGGTGATAATTTATGAGCGCGAATTTCT
GTAGATAAATAAATTAATTGTCG
back to top

protein sequence of SMED30024156-orf-1

>SMED30024156-orf-1 ID=SMED30024156-orf-1|Name=SMED30024156-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=441bp
MFNLDDFDVDFNDDIFDDFKSKSSLNLNVSSDRGTLSFGIGTSSDKRDEI
YLPKRLCLENPQLQSQISILSKANDTQSIKDYQEKHSNTLKLQSLIHKNI
SPKHDNDSPSYSPITSTQKERNSSNMAYLFDSTNKISPIKIKPGICSELR
KPGSLFPTDKSSHGSVKNSSNCQKFPGPAGNLPKVSNHNFHSVQGDNKFT
KIQKPERSNINTQKSRAKDFSNYSSQIEYSETWKMTRQILGNNRWMKFQK
YNLENVFKKNKEPNGLPNSKIPIICLVLSEIEYMPMDAVAILSDETGSIR
CAIHRQVLETYSEKLKTGSVLILKKVSIFSPSGKKYYFNITKSNIAEIIS
PGDEDWENRPLISEAEIEHLITECSEIPKIIFNPESLLKGTTTGAAVSHL
GNPQIAPPIIPDRKQIEFFDDEMDEFLVSFMDESFGGDNL*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR028045DUF4539
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028045Protein of unknown function DUF4539PFAMPF15072DUF4539coord: 270..351
e-value: 6.6E-25
score: 87.0
IPR028045Protein of unknown function DUF4539PANTHERPTHR14523UNCHARACTERIZED PROTEIN C17ORF53 HOMOLOGcoord: 87..351