SMED30024153

Overview
NameSMED30024153
Smed IDSMED30024153
Length (bp)3106
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30024153 (SMED30024153) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30024153 (SMED30024153) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30024153 (SMED30024153) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30024153 (SMED30024153) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30024153

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30024153SMESG000035332.1 SMESG000031365.1 SMESG000077214.1 SMESG000075241.1 SMESG000075191.1 dd_Smed_v4_168_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30024153SMESG000035332.1 SMESG000031365.1 SMESG000077214.1 SMESG000075241.1 SMESG000075191.1 dd_Smed_v4_168_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30024153SMESG000035332.1 SMESG000031365.1 SMESG000077214.1 SMESG000075241.1 SMESG000075191.1 dd_Smed_v4_168_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30024153SMESG000035332.1 SMESG000031365.1 SMESG000077214.1 SMESG000075241.1 SMESG000075191.1 dd_Smed_v4_168_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30024153SMESG000035332.1 SMESG000031365.1 SMESG000077214.1 SMESG000075241.1 SMESG000075191.1 dd_Smed_v4_168_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30024153SMESG000035332.1 SMESG000031365.1 SMESG000077214.1 SMESG000075241.1 SMESG000075191.1 dd_Smed_v4_168_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30024153SMESG000035332.1 SMESG000031365.1 SMESG000077214.1 SMESG000075241.1 SMESG000075191.1 dd_Smed_v4_168_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30024153SMESG000035332.1 SMESG000031365.1 SMESG000077214.1 SMESG000075241.1 SMESG000075191.1 dd_Smed_v4_168_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30024153 vs. Planmine SMEST
Match: SMESG000072682.1 (SMESG000072682.1)

HSP 1 Score: 107.457 bits (267), Expect = 1.212e-38
Identity = 52/95 (54.74%), Postives = 72/95 (75.79%), Query Frame = 1
Query: 2068 VCANKDLALHRQKALRGSEKEVFETKARELQAEIERLEAREITSTLEREVEDLTEEVNQLLYMLDGEMNISQELRERINEIVNIPPIVWTSLIPI 2352
            +C   DLALHRQK+LR S+KEVFE K +E+Q EIERL+ RE T+ LE EVEDL ++VNQL Y+LD E+  S+ ++ RINE ++ P ++W  L+P+
Sbjct:  192 MCEQMDLALHRQKSLRESKKEVFEVKVKEMQTEIERLKIRENTTMLESEVEDLIDQVNQLSYLLDEELCTSRTIQVRINEFMSTPQMIWLPLVPM 286          

HSP 2 Score: 73.559 bits (179), Expect = 1.212e-38
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 3
Query: 1869 SLQAQLKLQGKREGNLRKFTTIKVNQLTKMKSRLRKLTEEKKQSDLQTEIEKSRLECLKQDVVKFKSMCEQ 2081
             LQA+L LQ ++E NLR  TT KVNQL K ++ LRK+ E+K++SDLQ EIE+ RL   ++DV  +K MCEQ
Sbjct:  125 DLQAKLNLQERKEENLRNVTTDKVNQLKKTQNALRKINEDKEKSDLQVEIERQRLNYAERDVNGYKVMCEQ 195          

HSP 3 Score: 86.2705 bits (212), Expect = 8.946e-25
Identity = 48/90 (53.33%), Postives = 72/90 (80.00%), Query Frame = 3
Query: 2835 DCITNQWFQSRNLIKALKIEFEVLKKQREEVEDENDWLKQKIEVNKGWXXXXXXXXXXXXXXWSRHVLEDHWKTQARKMQRKYHKTKNLN 3104
            D ITNQWFQSRNLIKALK EF++   +R E+++EN  L QK+++N+ WE+ V+EL+ ELA KW+ HVL+D+ K +A+++++KY++ K LN
Sbjct:  379 DSITNQWFQSRNLIKALKTEFQLAAIKRRELKEENRSLNQKLKLNREWEQNVDELKGELANKWANHVLKDYLKKEAQRIKKKYYRIKRLN 468          

HSP 4 Score: 48.1358 bits (113), Expect = 8.946e-25
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 2
Query: 2624 MDNQRKLTTFEGESGETTINEG--IKPIKIEEENEFPFPMVCKIDXXXXXXXXXXXXXIKNIKMAMEQQIQE 2833
            M+ Q   TT E E+ ETT  +   IKPIKIE ENE   P  CKI+E  + E+ EQEE I+N+KM +EQQ QE
Sbjct:  306 MNEQMNETTMEVETSETTDKKDVRIKPIKIEVENEDQIPKECKIEELTDNENIEQEERIENMKMTIEQQRQE 377          

HSP 5 Score: 73.1738 bits (178), Expect = 7.469e-13
Identity = 43/74 (58.11%), Postives = 61/74 (82.43%), Query Frame = 3
Query: 1080 VIKRQTKYHSEMIDAAYARCLTESEKRLVKELQSQVKEQEIKMNYGKVMLELLNKNITXXXXXXXXXXXXYFRE 1301
            V KRQT YHSE+IDAAY RCLTE EK+ V++L++QV++Q  ++ + KVM+ELLNK + E+K+K+ E+KI+YF E
Sbjct:   40 VAKRQTAYHSEVIDAAYVRCLTEREKQKVRKLKTQVEKQGTEITHEKVMVELLNKKVEELKDKLEEVKIDYFGE 113          
BLAST of SMED30024153 vs. Planmine SMEST
Match: SMESG000072682.1 (SMESG000072682.1)

HSP 1 Score: 107.457 bits (267), Expect = 1.294e-38
Identity = 52/95 (54.74%), Postives = 72/95 (75.79%), Query Frame = 1
Query: 2068 VCANKDLALHRQKALRGSEKEVFETKARELQAEIERLEAREITSTLEREVEDLTEEVNQLLYMLDGEMNISQELRERINEIVNIPPIVWTSLIPI 2352
            +C   DLALHRQK+LR S+KEVFE K +E+Q EIERL+ RE T+ LE EVEDL ++VNQL Y+LD E+  S+ ++ RINE ++ P ++W  L+P+
Sbjct:  192 MCEQMDLALHRQKSLRESKKEVFEVKVKEMQTEIERLKIRENTTMLESEVEDLIDQVNQLSYLLDEELCTSRTIQVRINEFMSTPQMIWLPLVPM 286          

HSP 2 Score: 73.559 bits (179), Expect = 1.294e-38
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 3
Query: 1869 SLQAQLKLQGKREGNLRKFTTIKVNQLTKMKSRLRKLTEEKKQSDLQTEIEKSRLECLKQDVVKFKSMCEQ 2081
             LQA+L LQ ++E NLR  TT KVNQL K ++ LRK+ E+K++SDLQ EIE+ RL   ++DV  +K MCEQ
Sbjct:  125 DLQAKLNLQERKEENLRNVTTDKVNQLKKTQNALRKINEDKEKSDLQVEIERQRLNYAERDVNGYKVMCEQ 195          

HSP 3 Score: 86.2705 bits (212), Expect = 8.658e-25
Identity = 48/90 (53.33%), Postives = 72/90 (80.00%), Query Frame = 3
Query: 2835 DCITNQWFQSRNLIKALKIEFEVLKKQREEVEDENDWLKQKIEVNKGWXXXXXXXXXXXXXXWSRHVLEDHWKTQARKMQRKYHKTKNLN 3104
            D ITNQWFQSRNLIKALK EF++   +R E+++EN  L QK+++N+ WE+ V+EL+ ELA KW+ HVL+D+ K +A+++++KY++ K LN
Sbjct:  379 DSITNQWFQSRNLIKALKTEFQLAAIKRRELKEENRSLNQKLKLNREWEQNVDELKGELANKWANHVLKDYLKKEAQRIKKKYYRIKRLN 468          

HSP 4 Score: 48.1358 bits (113), Expect = 8.658e-25
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 2
Query: 2624 MDNQRKLTTFEGESGETTINEG--IKPIKIEEENEFPFPMVCKIDXXXXXXXXXXXXXIKNIKMAMEQQIQE 2833
            M+ Q   TT E E+ ETT  +   IKPIKIE ENE   P  CKI+E  + E+ EQEE I+N+KM +EQQ QE
Sbjct:  306 MNEQMNETTMEVETSETTDKKDVRIKPIKIEVENEDQIPKECKIEELTDNENIEQEERIENMKMTIEQQRQE 377          

HSP 5 Score: 72.7886 bits (177), Expect = 7.667e-13
Identity = 43/74 (58.11%), Postives = 61/74 (82.43%), Query Frame = 3
Query: 1080 VIKRQTKYHSEMIDAAYARCLTESEKRLVKELQSQVKEQEIKMNYGKVMLELLNKNITXXXXXXXXXXXXYFRE 1301
            V KRQT YHSE+IDAAY RCLTE EK+ V++L++QV++Q  ++ + KVM+ELLNK + E+K+K+ E+KI+YF E
Sbjct:   40 VAKRQTAYHSEVIDAAYVRCLTEREKQKVRKLKTQVEKQGTEITHEKVMVELLNKKVEELKDKLEEVKIDYFGE 113          
BLAST of SMED30024153 vs. Planmine SMEST
Match: SMESG000009758.1 (SMESG000009758.1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.744e-31
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 3
Query: 2835 DCITNQWFQSRNLIKALKIEFEVLKKQREEVEDENDWLKQKIEVNKGW 2978
            DC+TNQWFQSRNLIKALK E +VLK+QR+EVEDEN WLKQ IEVNKGW
Sbjct:  569 DCMTNQWFQSRNLIKALKRERDVLKRQRKEVEDENKWLKQNIEVNKGW 616          

HSP 2 Score: 70.4774 bits (171), Expect = 5.744e-31
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 2
Query: 2642 LTTFEGESGETTINEGIKPIKIEEENEFPFPMVCKI------DXXXXXXXXXXXXXIKNIKMAMEQQIQE 2833
            LTT E ESGETTINEGIKP+K+E ENEFP  M CKI      + SMEVES+EQEEMIKN+K+AMEQQIQE
Sbjct:  498 LTTIEVESGETTINEGIKPLKMEVENEFPISMKCKIEESMEVESSMEVESSEQEEMIKNMKIAMEQQIQE 567          

HSP 3 Score: 55.8398 bits (133), Expect = 1.337e-7
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 1
Query: 2068 VCANKDLALHRQKALRGSEKEVFETKARELQAEIERLEAREITSTLEREVEDLT 2229
            +C  +D+ L RQKA   ++ E  ETK R L++E+ERL+A E T+ L++EVEDLT
Sbjct:  440 MCEKRDIGLQRQKAQWENKNEALETKVRNLESEVERLKAHENTTMLKKEVEDLT 493          
BLAST of SMED30024153 vs. Planmine SMEST
Match: SMESG000003311.1 (SMESG000003311.1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.356e-18
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 1
Query: 2068 VCANKDLALHRQKALRGSEKEVFETKARELQAEIERLEAREITSTLEREVEDLTEEVNQLLYMLDGEMNISQELRERINEIVNI 2319
            +C  +D+ L RQKA   ++KE  +TK R L++++ERL+A E T+ L++EVEDLT +VNQL YMLDGEM  +QELRE  NE + I
Sbjct:   67 MCEKRDITLQRQKAQWENKKEALKTKVRNLESDVERLKAHENTTMLKKEVEDLTGKVNQLSYMLDGEMATTQELRENENEKIYI 150          

HSP 2 Score: 63.1586 bits (152), Expect = 2.392e-10
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 3
Query: 2856 FQSRNLIKALKIEFEVLKKQREEVEDENDWLKQKIEVNKGWXXXXXXXXXXXXXXWSRHVLEDHWKTQARKMQRKYHKTKNLN 3104
             QSR L K LK E  +L KQ+  +E+EN+ L+Q++EV KG EEKV+EL  +    W+R+V E HWK QA+++QRKY KTK LN
Sbjct:  180 VQSRKLFKTLKEECLILNKQKN-LEEENELLRQQMEVCKGLEEKVDELVAK----WTRYVQEKHWKVQAKRIQRKYRKTKRLN 257          

HSP 3 Score: 54.6842 bits (130), Expect = 1.341e-7
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 3
Query: 1872 LQAQLKLQGKREGNLRKFTTIKVNQLTKMKSRLRKLTEEKKQSDLQTEIEKSRLECLKQDVVKFKSMCEQRSCTSQAKSA 2111
            +Q QLK   +RE + +    I+ N++T  +   RKL+   +Q+ LQ EIE SRLE  ++DVV +K MCE+R  T Q + A
Sbjct:    1 MQKQLKKAKEREEDSKLILAIRENEITVAQRTFRKLSGLNEQNQLQVEIEHSRLEHAERDVVGYKDMCEKRDITLQRQKA 80          
BLAST of SMED30024153 vs. Planmine SMEST
Match: SMESG000025043.1 (SMESG000025043.1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.732e-13
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 2125 KEVFETKARELQAEIERLEAREITSTLEREVEDLTEEVNQLLYMLDGEMNISQELRERINEIVNIPPIVWTSLIPIMSVPTNTMNMGEPTEQPQETIIDEGFVEV 2439
            K+ +E   + L+ EIE+L+A E T  LE +VE+LTE    L Y+LD E+ IS  LRE IN + N PPI+   L+P+   PT       PT+ P E   DEGF E 
Sbjct: 2261 KQGYEENEQNLRREIEKLKALENTHRLETQVEELTENTEYLAYLLDEEIQISNTLREEINTLQNRPPIL---LMPL--YPTEM-----PTQVPAEP--DEGFGET 2353          

HSP 2 Score: 33.8834 bits (76), Expect = 1.732e-13
Identity = 39/134 (29.10%), Postives = 73/134 (54.48%), Query Frame = 3
Query: 1728 GLAKQVKLWKQKHQTAMKELKELPRKLIPLDNLQMWXXXXXXXXXXXSLQAQ---LKLQGK-REGNLRKFTTI------KVNQLTKMKSRLR-KLTEEKKQ--------SDLQTEIEKSRLECLKQDVVKFKSM 2072
             + ++ K WK+  Q A KE++ LP++++ +++ ++WEQ+E Q+  IE L  Q   L+ + K R+G +R+          + N++ K+ +  R +LT+EK+Q        ++LQ E+   R       VV FK +
Sbjct: 2110 AIKREAKKWKEHFQEAKKEIRLLPKRILNMEDWELWEQVEVQKETIEELNEQVQNLEFREKIRQGTIRRLRRHEKEYEQQFNEMYKISAEARNQLTDEKRQNQQLNERITELQQEVNGHR------GVVVFKEI 2237          
The following BLAST results are available for this feature:
BLAST of SMED30024153 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024153 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024153 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024153 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024153 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024153 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024153 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024153 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024153 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024153 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024153 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024153 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024153 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30024153 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000072682.11.212e-3854.74SMESG000072682.1[more]
SMESG000072682.11.294e-3854.74SMESG000072682.1[more]
SMESG000009758.15.744e-3183.33SMESG000009758.1[more]
SMESG000003311.12.356e-1853.57SMESG000003311.1[more]
SMESG000025043.11.732e-1343.81SMESG000025043.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30024153 ID=SMED30024153|Name=SMED30024153|organism=Schmidtea mediterranea sexual|type=transcript|length=3106bp
TAATATTCTGAATTGAAATGTTACAATAATAAATTAAAAAGTTACAATAG
GACAAAAATATTTTTAATTAATATTATTATTTTTAATTAAAATTTTCGCT
CCATCTTGCGAGCATATAGAGCAGATCGGCTTTGGCCTTTCCGATCTCCA
ATTGGTGCAACAGTTGCAGGGTGATCCACAAATAGCTTCTGTTTTTATTG
GATTTTCTTTTCTGTCCTTATATTCCATAAGAATCTTTTTGGCGCTGATA
CCAGTCGTCTCAAAGATTCTGTGTGTTATCACTTCCGGGATATGAGAGGA
TTATACTTTCGATAAGGAATTGAATAGCCATTTCTAAAACCATAAATTAA
AATGACATAATAAGGTTTAGGTAATAAGTGTGTCTCCAGGTGGTGACCAG
TGACATAATAAGTGTGTGACTGACCAGTGGTCAAGTGACGTAATCATGAG
GTCATTGCCCAAAGGTCAATTACTAGGTAGCAACTAATGGACAGAGGTCA
ATCTCCAGGTAACAACAGCGTGGACAGAGGTCAAATGTTATGTAATAATT
ACGCAAGCCAATGGGGGGTTGTATCTGACGGGCTCACATCCCACTACTCA
GTGTTGATAAAAAGTGAGCAGATAGAAGTAATGAACAAAATAAAAACGGA
AACGAGAAAGTGTGAGAGAATGTGGCAGTAATTACAAGAAGGTCACGAAA
ATGACATAGTTATGAAACAAAGTAACAACATAATGAACAGAGTCAAAGGG
GTATATGAAGAGGGGATAGAGGAGTTCGAGAAACTGATAAAGAGGAAGAT
TGAACAAGACATAACAGAAGAAAAAGGCAAGTACGCATCACAACAAACGA
CAATCACTCAAAAAGCCGAAATGGAAAACCTCCAAAAACAAGTAGAACAA
TGGGGAGGAAAGAACCGCAAAAAAGACGATCAGATAAAACAACTAAAAGA
AAGCAACCAGGAACAACAAACGAAAATAGACTACGGGAAAGTGTTGCTGG
AATTATTAAATCAGAATAACAATCAGTTATTGAAAGACGTGAGTGAGCTG
AACAAAAGGGTAACAAAACAGGTATGGGAGTCATAAAAAGACAGACCAAA
TACCACAGTGAAATGATAGATGCCGCATACGCGAGATGTTTGACAGAGAG
TGAAAAACGTTTAGTAAAAGAACTTCAAAGCCAAGTCAAGGAACAGGAAA
TAAAAATGAATTACGGAAAAGTAATGTTAGAACTGCTAAATAAAAACATA
ACAGAAGTGAAGGAAAAGGTAAATGAAATAAAAATAGAGTATTTCAGAGA
AATAATCAACACAGCCTACCAGCAAAGCTTAGCAGATAGATCAGTCCAGA
AAGAGAAAGAACTTCAAACCAAGTACAAAGAATCGAAAACGAAGACAACA
TTTTGCAAAACAATGATAGAGCTAGCCAGCAAAAGGAATAGTCGATTGGA
GGAAGATATAGAGGAATTGAGTGGAAGACTGTTGGGAAAAATGGACGAAT
TGGAGAAAATGCGAGTAAAATACCTAAGTCAGGTAGCAAAGGCAGCATTC
TTCCAATGTCGAGCCGAAGGAGCCGGAAGGAGAAACAAAGATCTCGAAGC
TCAAATAGAACAAGTAGGAAATGTGCAAATCAGAGTGAGAGATGAATTGG
AGCATACAAAAAGAGAACAGACTTCACAAGTGACCGAATGGTCGGAAATA
ATGCGCAGATACAAGAGAAAGATAAACGGGTTAGCAAAGCAGGTAAAACT
GTGGAAACAAAAACATCAGACAGCGATGAAAGAACTGAAAGAATTACCTA
GGAAATTGATACCACTAGACAATCTGCAGATGTGGGAGCAGATAGAGGAA
CAACAAGTAGAAATCGAAAGCCTACAAGCGCAGTTAAAGTTACAAGGAAA
AAGAGAAGGGAATCTCAGGAAATTTACCACGATTAAGGTAAATCAACTCA
CAAAAATGAAAAGCCGATTGAGAAAACTTACCGAAGAAAAGAAACAAAGC
GACCTGCAAACAGAAATAGAGAAGAGCAGGCTGGAATGCTTGAAACAAGA
CGTAGTTAAATTTAAAAGTATGTGCGAACAAAGATCTTGCACTTCACAGG
CAAAAAGCGCTTAGAGGAAGCGAAAAGGAAGTATTCGAAACCAAAGCGAG
AGAACTACAAGCAGAAATAGAGAGATTGGAAGCTCGAGAAATCACCTCGA
CATTGGAAAGAGAAGTAGAGGATCTCACAGAAGAGGTAAACCAACTGTTA
TATATGCTGGACGGGGAAATGAATATATCGCAAGAATTGCGAGAAAGGAT
AAACGAGATAGTGAATATCCCACCCATTGTGTGGACTTCACTAATACCAA
TAATGTCAGTGCCGACCAACACTATGAATATGGGAGAACCAACGGAGCAA
CCACAAGAAACCATAATAGACGAAGGGTTCGTGGAAGTGTGGGGCACATG
GGTGTAGAATGAATGACAAGAGATGAAAATGTAAAGATATGTAAATATTG
AAGTAAATAAAACGAAAAATTAGAAAACGAATTAAAATTAAAAACCAGAT
AAAACCCATAAAAAGAATAAAAAATATAAAGAAAAATGAAAATAACAAAA
ATTTATGTACAAAATTTGTAGAAATGGATAACCAAAGAAAATTAACAACA
TTTGAAGGAGAGTCCGGCGAGACCACTATCAATGAAGGCATTAAACCTAT
AAAAATTGAAGAGGAAAACGAGTTTCCATTCCCGATGGTATGTAAAATCG
ATGAGTCAATGGAGGTAGAAAGTAATGAACAGGAAGAAATGATAAAAAAT
ATAAAAATGGCGATGGAACAGCAAATTCAAGAAAGACTGTATAACCAATC
AGTGGTTCCAATCGCGAAATTTAATAAAGGCGTTAAAAATAGAATTTGAG
GTATTAAAAAAACAACGAGAAGAAGTAGAAGACGAAAACGATTGGTTGAA
ACAGAAAATCGAAGTAAACAAGGGTTGGGAAGAAAAAGTAGAGGAACTGG
AAACCGAACTGGCAACAAAATGGTCAAGACATGTGTTGGAGGACCATTGG
AAAACCCAAGCAAGGAAAATGCAAAGAAAATACCATAAAACCAAAAACTT
AAACCT
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protein sequence of SMED30024153-orf-1

>SMED30024153-orf-1 ID=SMED30024153-orf-1|Name=SMED30024153-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=347bp
MGVIKRQTKYHSEMIDAAYARCLTESEKRLVKELQSQVKEQEIKMNYGKV
MLELLNKNITEVKEKVNEIKIEYFREIINTAYQQSLADRSVQKEKELQTK
YKESKTKTTFCKTMIELASKRNSRLEEDIEELSGRLLGKMDELEKMRVKY
LSQVAKAAFFQCRAEGAGRRNKDLEAQIEQVGNVQIRVRDELEHTKREQT
SQVTEWSEIMRRYKRKINGLAKQVKLWKQKHQTAMKELKELPRKLIPLDN
LQMWEQIEEQQVEIESLQAQLKLQGKREGNLRKFTTIKVNQLTKMKSRLR
KLTEEKKQSDLQTEIEKSRLECLKQDVVKFKSMCEQRSCTSQAKSA*
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protein sequence of SMED30024153-orf-2

>SMED30024153-orf-2 ID=SMED30024153-orf-2|Name=SMED30024153-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=125bp
MKQSNNIMNRVKGVYEEGIEEFEKLIKRKIEQDITEEKGKYASQQTTITQ
KAEMENLQKQVEQWGGKNRKKDDQIKQLKESNQEQQTKIDYGKVLLELLN
QNNNQLLKDVSELNKRVTKQVWES*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron