CKLF-like MARVEL transmembrane domain-containing protein 7
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30024152 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 12
Homology
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. TrEMBL
Match: A0A4E0RCG1 (Marvel-containing potential lipid raft-associated protein OS=Fasciola hepatica OX=6192 GN=D915_004090 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 3.944e-15 Identity = 60/159 (37.74%), Postives = 90/159 (56.60%), Query Frame = 3 Query: 123 VDYGFIRTVPFYLKVAEL-LCCIAIWICVACTKGFPIYGGGGFINFCSTLSFIMTLILFLLYLFAKIQVIPGPWVLIEVITILSSIVLFLICLLVAAISTDYXXXXXXXXXXXXXEMVIYIVEFVLRFKVMRTT-GFRFSAHMKSTDNTETGQNTVNNP 593 V+ F++ + LK+ E+ L CI I ICV+ T + Y GG++NF + L+ I + ++ YLF I+ + GPW++IE T++ S+V + I +VAA + +G GAIA A+ S M +YI E V RF+V + GFR T TG TV P Sbjct: 22 VNTAFVKNLSGILKLLEVVLSCIVI-ICVSATGSWSSYASGGWMNFVAALTLIFAALFYIFYLFNLIRRLRGPWIIIEFATLVVSVVFWFIAFIVAASMSRFGPGAIAAAVFSVAAMSVYIAELVTRFRVSKQAGGFRI---------TMTGVKTVTAP 170
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. TrEMBL
Match: A0A504YMW6 (Marvel-containing potential lipid raft-associated protein OS=Fasciola gigantica OX=46835 GN=FGIG_00890 PE=4 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 6.728e-15 Identity = 59/159 (37.11%), Postives = 89/159 (55.97%), Query Frame = 3 Query: 123 VDYGFIRTVPFYLKVAEL-LCCIAIWICVACTKGFPIYGGGGFINFCSTLSFIMTLILFLLYLFAKIQVIPGPWVLIEVITILSSIVLFLICLLVAAISTDYXXXXXXXXXXXXXEMVIYIVEFVLRFKVMRTT-GFRFSAHMKSTDNTETGQNTVNNP 593 V+ F++ + LK+ E+ L CI I ICV+ T + Y GG++NF + L+ I + ++ YLF I+ + GPW++IE T++ S+V + I +VAA + +G GAIA A+ S M +YI E RF+V + GFR T TG TV P Sbjct: 22 VNTAFVKNLSGILKLLEVVLSCIVI-ICVSATGSWSSYASGGWMNFVAALTLIFAALFYIFYLFNLIRRLRGPWIIIEFATLVVSVVFWFIAFIVAASMSRFGAGAIAAAVFSVAAMSVYIAELATRFRVSKQAGGFRI---------TMTGVKTVTAP 170
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. TrEMBL
Match: C1L435 (Hypotheticial protein OS=Schistosoma japonicum OX=6182 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 9.012e-14 Identity = 49/138 (35.51%), Postives = 82/138 (59.42%), Query Frame = 3 Query: 123 VDYGFIRTVPFYLKVAELLCCIAIWICVACTKGFPIYGGGGFINFCSTLSFIMTLILFLLYLFAKIQVIPGPWVLIEVITILSSIVLFLICLLVAAISTDYXXXXXXXXXXXXXEMVIYIVEFVLRFKV-MRTTGFRF 533 ++ GF+R++ LK+ ++L + ICVA T + IY GG++NF ++++ I + ++ YLF I+ +PGPW++IE +L + I L+VAA + G GAIA A+ S + + +YI E RF+ R GF + Sbjct: 25 INVGFVRSLSGILKLCQILLSCIVLICVAATTAWSIYPSGGWVNFVASVTLICASVFYIFYLFNLIRKLPGPWIIIEFSVLLICTFFWFITLIVAAANNGKGSGAIAAAVFSAVALGVYITELATRFRCERRGNGFHY 162
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. TrEMBL
Match: G4VKT0 (Putative marvel-containing potential lipid raft-associated protein OS=Schistosoma mansoni OX=6183 GN=Smp_046290 PE=4 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 5.904e-13 Identity = 53/159 (33.33%), Postives = 85/159 (53.46%), Query Frame = 3 Query: 123 VDYGFIRTVPFYLKVAELLCCIAIWICVACTKGFPIYGGGGFINFCSTLSFIMTLILFLLYLFAKIQVIPGPWVLIEVITILSSIVLFLICLLVAAISTDYXXXXXXXXXXXXXEMVIYIVEFVLRFKV-MRTTGFRFSAHMKSTDNTETGQNTVNNPS 596 ++ GF+R++ LK+ ++L + ICVA T + I+ GG++NF + + I + ++ YLF I+ +PGPW++IE +L + I L+VAA G GAIA A+ S I + +YI E RF+ R GF + T + G T P+ Sbjct: 25 INVGFVRSLSGILKLCQILLSCIVLICVAATSYWSIHSSGGWVNFVAATTLICAAVFYIFYLFNLIRKLPGPWIIIEFSVLLICTFFWFITLIVAAAHHSKGAGAIAAAVFSAIALAVYITELATRFRCERRGNGFIITMTGVMTTHATHGPPTFAQPA 183
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. TrEMBL
Match: Q5DBL8 (SJCHGC06191 protein OS=Schistosoma japonicum OX=6182 GN=EWB00_011407 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 6.993e-13 Identity = 49/136 (36.03%), Postives = 81/136 (59.56%), Query Frame = 3 Query: 123 VDYGFIRTVPFYLKVAELLCCIAIWICVACTKGFPIYGGGGFINFCSTLSFIMTLILFLLYLFAKIQVIPGPWVLIEVITILSSIVLFLICLLVAAISTDYXXXXXXXXXXXXXEMVIYIVEFVLRFK-VMRTTGF 527 ++ GF+R++ LK+ ++L + ICVA T + IY GG++NF ++++ I + ++ YLF I+ +PGPW++IE +L + I L+VAA + G GAIA A+ S + + +YI E RF+ R GF Sbjct: 25 INVGFVRSLSGILKLCQILLSCIVLICVAATTAWSIYPSGGWVNFVASVTLICASVFYIFYLFNLIRKLPGPWIIIEFSVLLICTFFWFITLIVAAANNGKGSGAIAAAVFSAVALGVYITELATRFRCERRGNGF 160
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. Planmine SMEST
Match: SMESG000001041.1 (SMESG000001041.1) HSP 1 Score: 310.842 bits (795), Expect = 1.355e-107 Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 3 Query: 111 MCLKVDYGFIRTVPFYLKVAELLCCIAIWICVACTKGFPIYGGGGFINFCSTLSFIMTLILFLLYLFAKIQVIPGPWVLIEVITILSSIVLFLICLLVAAISTDYXXXXXXXXXXXXXEMVIYIVEFVLRFKVMRTTGFRFSAHMKSTDNTETGQNTVNNPSGPYIIGA 617 MCLKVDYGFIRTVPFYLKVAELLCCIAIWICVACTKGFPIYGGGGFINFCSTLSFIMTLILFLLYLFAKIQVIPGPWVLIEVITILSSIVLFL+CLLVAAISTDYG GAIATAIISGIEMVIYIVEFVLRFKVMRTTGFRFSAHMKSTDNTETGQNTVNNPSGPYIIGA Sbjct: 1 MCLKVDYGFIRTVPFYLKVAELLCCIAIWICVACTKGFPIYGGGGFINFCSTLSFIMTLILFLLYLFAKIQVIPGPWVLIEVITILSSIVLFLVCLLVAAISTDYGSGAIATAIISGIEMVIYIVEFVLRFKVMRTTGFRFSAHMKSTDNTETGQNTVNNPSGPYIIGA 169
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. Planmine SMEST
Match: SMESG000017269.1 (SMESG000017269.1) HSP 1 Score: 84.7297 bits (208), Expect = 2.522e-19 Identity = 63/141 (44.68%), Postives = 89/141 (63.12%), Query Frame = 3 Query: 135 FIRTVPFYLKVAELLCCIAIWICVACTKGFPIYGGGGFINFCSTLSFIMTLILFLLYLFAKIQVIPGPWVLIEVITILSSIVLFLICLLVAAISTDYXXXXXXXXXXXXXEMVIYIVEFVLRFKVMRTTGFRFSAHMKSTD 557 FI ++P LK+ EL+ I IWICV T F G GG+INF +T++FI T++ F+LYL I +PGPW+LIE ++IL S+ I +LV A S +GGGAIA + + V+Y VE LRF++ R+ G+ F+A D Sbjct: 27 FIISLPGILKIIELVVDIIIWICVGSTPFFGYGGNGGYINFAATITFIFTIVFFILYLSNIIYRLPGPWILIECVSILLSVFFLTIAILVGAFSHKFGGGAIAATVFCALNDVVYGVEMFLRFRITRSGGWTFTATAIDGD 167 The following BLAST results are available for this feature:
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of CKLF-like MARVEL transmembrane domain-containing protein 7 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30024152 ID=SMED30024152|Name=CKLF-like MARVEL transmembrane domain-containing protein 7|organism=Schmidtea mediterranea sexual|type=transcript|length=960bpback to top protein sequence of SMED30024152-orf-1 >SMED30024152-orf-1 ID=SMED30024152-orf-1|Name=SMED30024152-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=170bp MCLKVDYGFIRTVPFYLKVAELLCCIAIWICVACTKGFPIYGGGGFINFCback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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