C2H2-type domain-containing protein

Overview
NameC2H2-type domain-containing protein
Smed IDSMED30024150
Length (bp)2694
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of C2H2-type domain-containing protein (SMED30024150) t-SNE clustered cells

Violin plots show distribution of expression levels for C2H2-type domain-containing protein (SMED30024150) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of C2H2-type domain-containing protein (SMED30024150) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for C2H2-type domain-containing protein (SMED30024150) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30024150

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
protonephridial progenitor cellSMED30024150h1SMcG0012294 SMED30024150smed_20140614PMID:29906446
Zeng et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
X2 cellSMED30024150h1SMcG0012294 SmedASXL_016663SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
protonephridiaSMED30024150h1SMcG0012294 dd_Smed_v4_12617_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30024150h1SMcG0012294 dd_Smed_v4_12617_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30024150h1SMcG0012294 dd_Smed_v4_12617_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30024150h1SMcG0012294 dd_Smed_v4_12617_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30024150h1SMcG0012294 dd_Smed_v4_12617_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30024150h1SMcG0012294 dd_Smed_v4_12617_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30024150h1SMcG0012294 dd_Smed_v6_12617_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Match: die-1 (Dorsal Intercalation and Elongation defect [Source:UniProtKB/TrEMBL;Acc:A0A131MCL4])

HSP 1 Score: 52.7582 bits (125), Expect = 1.090e-6
Identity = 18/24 (75.00%), Postives = 23/24 (95.83%), Query Frame = 1 
Query: 1210 CDICHKDLCNKYFLRTHKLKLHGV 1281
            CDIC+K++CNKYFLRTH LK+HG+
Sbjct:  316 CDICNKEVCNKYFLRTHMLKMHGI 339
[Close]
BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Match: die-1 (Dorsal Intercalation and Elongation defect [Source:UniProtKB/TrEMBL;Acc:A0A131MCL4])

HSP 1 Score: 52.7582 bits (125), Expect = 1.090e-6
Identity = 18/24 (75.00%), Postives = 23/24 (95.83%), Query Frame = 1 
Query: 1210 CDICHKDLCNKYFLRTHKLKLHGV 1281
            CDIC+K++CNKYFLRTH LK+HG+
Sbjct:  316 CDICNKEVCNKYFLRTHMLKMHGI 339
[Close]
BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Match: die-1 (Dorsal Intercalation and Elongation defect [Source:UniProtKB/TrEMBL;Acc:A0A131MCL4])

HSP 1 Score: 52.7582 bits (125), Expect = 1.197e-6
Identity = 18/24 (75.00%), Postives = 23/24 (95.83%), Query Frame = 1 
Query: 1210 CDICHKDLCNKYFLRTHKLKLHGV 1281
            CDIC+K++CNKYFLRTH LK+HG+
Sbjct:  292 CDICNKEVCNKYFLRTHMLKMHGI 315
[Close]
BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Match: die-1 (Dorsal Intercalation and Elongation defect [Source:UniProtKB/TrEMBL;Acc:A0A131MCL4])

HSP 1 Score: 52.7582 bits (125), Expect = 1.197e-6
Identity = 18/24 (75.00%), Postives = 23/24 (95.83%), Query Frame = 1 
Query: 1210 CDICHKDLCNKYFLRTHKLKLHGV 1281
            CDIC+K++CNKYFLRTH LK+HG+
Sbjct:  292 CDICNKEVCNKYFLRTHMLKMHGI 315
[Close]
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: R7V1S1 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_196463 PE=4 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.779e-24
Identity = 89/260 (34.23%), Postives = 125/260 (48.08%), Query Frame = 1 
Query: 1177 MAAAKLADRVTCDICHKDLCNKYFLRTHKLKLHGVQTIDSIGRTGNRKEKTGFFDRCQNSMDQLNPNPGFIGTPFSRNPLPDPLLTASLFTNNSKPRPGSPETGCFCPICKRLISLPYFLPLHMWNAHGI------------GMGSHTSI--MPSVCSSRSNL-------------DQNILEP--PF-IPNNLQSKIN-PSLFPLSFCNNNIDTGMS---SKWYRKSP-NQMRVRCDICDKWICNKYFLRTHKLNKHGLT 1851
            M AAKLADRVTC+IC+K++CNKYFLRTHK+K+HG+   ++        E      +   +      +P        + P  + LL   +           PE   +C IC++     YFL  H  N HGI             M S T++  MPS+ S  S               DQ++L P  P+ IP +  S +  P   P+     + D+  +   SKW  K P NQ RV C+IC+K +CNKYFL+TH + KHG+T
Sbjct:  647 MIAAKLADRVTCEICNKEVCNKYFLRTHKIKVHGMDPAEA----EKEPEMKTTPTKPGTTATGQASSPAEAAKEALQRPNDEELLKMGI----------DPEA--YCEICRKEFCSKYFLKTHKANIHGIKADCMPTMPSMPSMASMTTMPSMPSMASMASMTTMPSLPMPTLKFPDQSLLRPQLPYGIPQSGASMVPLPGALPMLERRASPDSDGAKSESKWMWKEPINQTRVMCEICNKELCNKYFLKTHMMKKHGIT 890
[Close]
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: V4AV67 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_157392 PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.774e-24
Identity = 87/246 (35.37%), Postives = 119/246 (48.37%), Query Frame = 1 
Query: 1177 MAAAKLADRVTCDICHKDLCNKYFLRTHKLKLHGVQTIDSIGRTGNRKEKTGFFDRCQNSMDQ--LNPNPGFIGTPFSRNPLPDPLLTASLFTNNSKP--RPGSPET-------GCFCPICKRLISLPYFLPLHMWNAHGIGMGS-HTSIMPSVCSSRSNLDQNILEPPFIPNNLQSK--INPSLFPL------SFCNNNIDTGMSSKWYRKSP-NQMRVRCDICDKWICNKYFLRTHKLNKHGLT 1851
            M AAKLADRV CDIC+K+LCNKYFL+ HKLK+HG+     IG + N ++K G     Q+ + +  +   P F+   F++  L        +  N + P  +P   E          +C ICK+     YFL  H  N HGI          P            +   PF+P++L     + P+L P            + D+     W  K P N  RV C+IC+K +CNKYFLRTHKLNKHG+ 
Sbjct:  598 MIAAKLADRVVCDICNKELCNKYFLKAHKLKVHGI----DIGLSENPEQK-GESQSKQSLLPKPDMKDMPMFVPELFAQELLARAQNAKKVDLNLTPPSDKPTYEELMKLGIDPEAYCEICKKEFCSKYFLRTHKLNIHGIKADKFDEKDKPYPLLPMMPGLPMMPGFPFLPSSLSGMPLLAPNLPPTPTSISSKLEQTDPDSYEKRTWRWKEPVNNSRVICEICNKEVCNKYFLRTHKLNKHGIV 838
[Close]
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A0L8FT79 (Uncharacterized protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22008700mg PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.006e-23
Identity = 90/277 (32.49%), Postives = 120/277 (43.32%), Query Frame = 1 
Query: 1177 MAAAKLADRVTCDICHKDLCNKYFLRTHKLKLHGVQTI-------DSIGRT---------GNRKEKTGFFDRCQN------SMDQLNPNPGFIGTPFSRNPLPDPLLTASLFTNNSKPRPGSPETGCFCPICKRLISLPYFLPLHMWNAHGIGMGSHTSIMPSVCSSRSNLDQNILEPPFIPNNLQSKINPSLFPLSFCNNNIDTGMSSK-WYRKSP-NQMRVRCDICDKWICNKYFLRTHKLNKHGLTDNGSNTDVNSDSVSRNFFIDSSTAPNPS 1935
            M AAKLADRVTCDIC K+LCNKYFL+ HKLK+HG+  +        S G++          N+KE      R Q        M +++ N     T       PD      +  +        PE   +C ICK+ +   YFL  H  N HGI                  +D   ++   +P   +  IN     +S      +       W  K P N  RV CDIC+K +CNKYFLRTHKLNKHG+        +      R+  +DS +  N S
Sbjct:  165 MIAAKLADRVTCDICSKELCNKYFLKNHKLKVHGIDIMSAEKENKQSEGKSVSPKLNLFKDNQKEYIRDIIRDQAKELALLEMQKVDMNGKEFLTSMCNIEKPDHHELVKMGID--------PEA--YCEICKKELCSKYFLRTHKLNIHGI--------------KSDRIDSKTIDKMQLPQPNKKLINNLAVSMSMDGFQPNESFEKHTWRWKEPVNSSRVICDICNKELCNKYFLRTHKLNKHGILPTAEEQKITPSPSMRSSPVDSGSIGNAS 417

HSP 2 Score: 62.7734 bits (151), Expect = 4.059e-6
Identity = 60/246 (24.39%), Postives = 106/246 (43.09%), Query Frame = 1 
Query: 1210 CDICHKDLCNKYFLRTHKLKLHGVQTIDSIGRTGNRKEKTGFFDRCQN------SMDQLNPNPGFIGTPFSRNPLPDPLLTASLFTNNSKPRPGSPETGCFCPICKRLISLPYFLPLHMWNAHGI-GMGSHTSIMPSVCSSRSNLDQNILEPPFIPNNLQSKINP--SLFPLSF---CNNNIDTGMSSKWYRKSPNQMRVR--------------------CDICDKWICNKYFLRTHKLNKHGLT 1851
            C+IC K+LC+KYFLRTHKL +HG+++     +T ++ +      +  N      SMD   PN  F    +      +P+ ++ +                 C IC + +   YFL  H  N HGI        I PS     S +D   +     P +   K++   S+ P S    C  N D+ + ++ ++++P++++++                    C +CD+   N+ +L  H L  HG++
Sbjct:  283 CEICKKELCSKYFLRTHKLNIHGIKSDRIDSKTIDKMQLPQPNKKLINNLAVSMSMDGFQPNESFEKHTWR---WKEPVNSSRVI----------------CDICNKELCNKYFLRTHKLNKHGILPTAEEQKITPSPSMRSSPVDSGSIGNAS-PGSQIEKLSDGFSILPNSLSDSCLTNSDSKLLTQ-HQQNPDEVKIKTEQLDDTPVNNRYYNHFTEVCKLCDRRFKNEKWLHAHVLKDHGVS 507
[Close]
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A0R3TU76 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS11286 PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.455e-14
Identity = 68/202 (33.66%), Postives = 98/202 (48.51%), Query Frame = 1 
Query: 1072 NQSSIPKLLPKNEPTP---PVNTTNDSYISP--FDAFKSSMAAAKLADRVTCDICHKDLCNKYFLRTHKLKLHGVQTIDSIGRTGNRKEKTGFFDRCQNSMDQLNPN-------------------------PGFIGT-PFSRNPLPDPLL----TASLFTNNSKP--RPGSPETGCFCPICKRLISLPYFLPLHMWNAHGI 1566
            N + IP ++   EP P   P   T    ++P   D FKSSMAAAKLADRVTC++C K+LCNKYFLRTHK+K+HG+ +   +G   +R   T   ++ Q   + LN N                         P  +GT P   +P P  ++     +SL      P  +  +      CP+C++ I    FLP H+ + HG+
Sbjct:  272 NATFIPPVV-STEPAPISNPSAVTTSKALNPGAIDMFKSSMAAAKLADRVTCELCKKELCNKYFLRTHKIKVHGL-SPQEVGGPASRSSATKHNEKIQ--AECLNQNVEPFNLPPPIPPPLSLVNPMLPSQFPAPLGTIPPWLSPQPQAMMPEMPKSSLEDQKKDPVMQLMAANALVNCPLCEKTIGPRLFLPTHLTSVHGL 469

HSP 2 Score: 79.7221 bits (195), Expect = 2.291e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query: 1747 RKSPNQMRVRCDICDKWICNKYFLRTHKLNKHGLTD 1854
            RKSPNQMRV CDIC+KWICNKYFLRTHK NKHG+TD
Sbjct:  659 RKSPNQMRVLCDICNKWICNKYFLRTHKANKHGITD 694

HSP 3 Score: 70.4774 bits (171), Expect = 1.585e-8
Identity = 67/221 (30.32%), Postives = 95/221 (42.99%), Query Frame = 1 
Query: 1198 DRVTCDICHKDLCNKYFLRTHKLKLHGVQTIDSIGRTGNRKEKTGFFDRCQNSMDQLNPNPGFIGTPFSRNPLPDPLLTASLFTNNSK-PRPG--SPETGCFCPICKRLISLPYFLPLHMWNAHGIGMGSHTSIMPSVCSSRSNLDQNILEPPFIPNNLQSKINPSLFPLSFCNNNIDTGMSSKWYRKSPNQMRVRCDICDKWICNKYFLRTHKLNKHGLT 1851
            D   C++C K  CNKY+LR HK  +H    I S   +  RK + G  +   N  DQ   +P    + +  N L    +TA    +N + P     S       P      S P +LP        + +G + + +P V S+         EP  I N      + +L P       ID   SS    K  +  RV C++C K +CNKYFLRTHK+  HGL+
Sbjct:  148 DEDFCELCQKHFCNKYYLRKHKNDVH---RIPSEPFSQMRKRELGSGESDDN--DQGEKSPCTSQSEW-LNVLTSSAVTAQQLGDNRRTPLEAFRSISNAGEVPSALEKESFPVWLPKSEQKTSRVELGENATFIPPVVST---------EPAPISNPSAVTTSKALNP-----GAIDMFKSSMAAAKLAD--RVTCELCKKELCNKYFLRTHKIKVHGLS 346
[Close]
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A0R3S8K3 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS486 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.538e-14
Identity = 59/167 (35.33%), Postives = 82/167 (49.10%), Query Frame = 1 
Query: 1156 FDAFKSSMAAAKLADRVTCDICHKDLCNKYFLRTHKLKLHGVQTIDSIG---RTGNRKEKTGFFDRCQNS-MDQLNPNPGF-----IGTPFSRNPLPDPLLTASLFTNNSKPRPGSPETG---------------------CFCPICKRLISLPYFLPLHMWNAHGI 1566
             D FKSSMAAAKLADRVTC++C K+LCNKYFLRTHK+K+HG+   +  G   R+   K        C N  ++  N  P       +  P  ++  P PL T   +  +S+P+   PE                         CP+C++ I    FLP H+ + HG+
Sbjct:  305 MDMFKSSMAAAKLADRVTCELCKKELCNKYFLRTHKIKVHGLSPQEVGGPTSRSSASKHNEKMQSECTNQNVEAFNLPPPIPPPLSLVNPMLQSQFPAPLGTIPPWL-SSQPQAVMPEVPMPSQEDQKKDPVMQLMAANALVNCPLCEKTIGPRLFLPTHLTSVHGL 470

HSP 2 Score: 80.1073 bits (196), Expect = 2.177e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query: 1747 RKSPNQMRVRCDICDKWICNKYFLRTHKLNKHGLTD 1854
            RKSPNQMRV CDIC+KWICNKYFLRTHK NKHG+TD
Sbjct:  661 RKSPNQMRVLCDICNKWICNKYFLRTHKANKHGITD 696

HSP 3 Score: 62.7734 bits (151), Expect = 4.644e-6
Identity = 62/223 (27.80%), Postives = 95/223 (42.60%), Query Frame = 1 
Query: 1198 DRVTCDICHKDLCNKYFLRTHKLKLHGVQTIDSIGRTGNRKEKTGFFDRCQNSMDQLNPNPGFIGTPFSRNPLPDPLLTASLFTNNSKP-----RPGSPETGCFCPICKRLISLPYFLPLHMWNAHGIGMGSHTSIMPSVCSSRSNLDQNILEPPFIPNNLQSKINPSLFPLSFCNNNIDTGMSSKWYRKSPNQMRVRCDICDKWICNKYFLRTHKLNKHGLT 1851
            D   C++C K  CNKY+LR HK  +H + + +   +T  R+  +G  D      DQ   +P    + +  N L    +TA    +N +      R  S       P+ K   S P ++P        + +G + + +P V S+ S    N              +NP           +D   SS    K  +  RV C++C K +CNKYFLRTHK+  HGL+
Sbjct:  149 DEDFCELCQKHFCNKYYLRKHKNDVHRIPS-EPFSQTRKRELGSGESD----DNDQGEKSPCTSQSEW-MNVLTSSAVTAQQLGDNRRTPLEAFRNISNAGDIPLPLEKE--SFPVWMPKSEQKTSRVELGENATFIPPVVSTESTPTSNSSS-----VTTSKMLNPGA---------MDMFKSSMAAAKLAD--RVTCELCKKELCNKYFLRTHKIKVHGLS 347
[Close]
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000004456.1 (SMESG000004456.1)

HSP 1 Score: 1542.71 bits (3993), Expect = 0.000e+0
Identity = 846/846 (100.00%), Postives = 846/846 (100.00%), Query Frame = 1 
Query:   70 MNMIDKIMDSQSLTGPSLGQPGPVMISLPDFRTRPESFLNASTAGYFPDNLFLLNPSLFSRAINPSSAFSDLNSNFKLSLGNPNLENEPDKNSEEEDFCEKCQKRFCNKYYLRKHKIDVHKVECDLPNLVDSSIADSQQKSSIFQXXXXXXXXXXXXXXXXXQKSIGPMFPNILLPAPSMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVFSQSGFRISQPGSIISTTEPXXXXXXXXXXXXXXXXXENRMTNISTSIFDNVKNTFINMPLDSKSFPSINSMENTFREQNKPIQQQSVSCNICGIQLTGGDTVLLDHLFTCHNKENINNQSSIPKLLPKNEPTPPVNTTNDSYISPFDAFKSSMAAAKLADRVTCDICHKDLCNKYFLRTHKLKLHGVQTIDSIGRTGNRKEKTGFFDRCQNSMDQLNPNPGFIGTPFSRNPLPDPLLTASLFTNNSKPRPGSPETGCFCPICKRLISLPYFLPLHMWNAHGIGMGSHTSIMPSVCSSRSNLDQNILEPPFIPNNLQSKINPSLFPLSFCNNNIDTGMSSKWYRKSPNQMRVRCDICDKWICNKYFLRTHKLNKHGLTDNGSNTDVNSDSVSRNFFIDSSTAPNPSSTGTDPSDXXXXXXXXXXXXDSSPIDLSASPIRTTNPLQNTVTASIYNPEKPISITSSQSMPGFNLNSLWTTRMNFPWPLRFSVDRLNLPSIINNNPRGSVPLDLSMKTEEIENIKKESSCVKLESESMNTYNYRSVLFNAAKRLKVKYQKIYRSRFIQNAFLTSRKNCHFLNHPIPSNAMLDCLSCPLCGKELNDAASFLQHLTQFHDMVLPGSHSNPVADVC 2607
            MNMIDKIMDSQSLTGPSLGQPGPVMISLPDFRTRPESFLNASTAGYFPDNLFLLNPSLFSRAINPSSAFSDLNSNFKLSLGNPNLENEPDKNSEEEDFCEKCQKRFCNKYYLRKHKIDVHKVECDLPNLVDSSIADSQQKSSIFQPSIFNPLFSSSFSNFLLQKSIGPMFPNILLPAPSMPSLSQSNSDFNLSSSLTLASAPLLSSTASASNPSPVFSQSGFRISQPGSIISTTEPSLSTNLNTFSNNLVSLNENRMTNISTSIFDNVKNTFINMPLDSKSFPSINSMENTFREQNKPIQQQSVSCNICGIQLTGGDTVLLDHLFTCHNKENINNQSSIPKLLPKNEPTPPVNTTNDSYISPFDAFKSSMAAAKLADRVTCDICHKDLCNKYFLRTHKLKLHGVQTIDSIGRTGNRKEKTGFFDRCQNSMDQLNPNPGFIGTPFSRNPLPDPLLTASLFTNNSKPRPGSPETGCFCPICKRLISLPYFLPLHMWNAHGIGMGSHTSIMPSVCSSRSNLDQNILEPPFIPNNLQSKINPSLFPLSFCNNNIDTGMSSKWYRKSPNQMRVRCDICDKWICNKYFLRTHKLNKHGLTDNGSNTDVNSDSVSRNFFIDSSTAPNPSSTGTDPSDNHNNNQTTNLENDSSPIDLSASPIRTTNPLQNTVTASIYNPEKPISITSSQSMPGFNLNSLWTTRMNFPWPLRFSVDRLNLPSIINNNPRGSVPLDLSMKTEEIENIKKESSCVKLESESMNTYNYRSVLFNAAKRLKVKYQKIYRSRFIQNAFLTSRKNCHFLNHPIPSNAMLDCLSCPLCGKELNDAASFLQHLTQFHDMVLPGSHSNPVADVC
Sbjct:    1 MNMIDKIMDSQSLTGPSLGQPGPVMISLPDFRTRPESFLNASTAGYFPDNLFLLNPSLFSRAINPSSAFSDLNSNFKLSLGNPNLENEPDKNSEEEDFCEKCQKRFCNKYYLRKHKIDVHKVECDLPNLVDSSIADSQQKSSIFQPSIFNPLFSSSFSNFLLQKSIGPMFPNILLPAPSMPSLSQSNSDFNLSSSLTLASAPLLSSTASASNPSPVFSQSGFRISQPGSIISTTEPSLSTNLNTFSNNLVSLNENRMTNISTSIFDNVKNTFINMPLDSKSFPSINSMENTFREQNKPIQQQSVSCNICGIQLTGGDTVLLDHLFTCHNKENINNQSSIPKLLPKNEPTPPVNTTNDSYISPFDAFKSSMAAAKLADRVTCDICHKDLCNKYFLRTHKLKLHGVQTIDSIGRTGNRKEKTGFFDRCQNSMDQLNPNPGFIGTPFSRNPLPDPLLTASLFTNNSKPRPGSPETGCFCPICKRLISLPYFLPLHMWNAHGIGMGSHTSIMPSVCSSRSNLDQNILEPPFIPNNLQSKINPSLFPLSFCNNNIDTGMSSKWYRKSPNQMRVRCDICDKWICNKYFLRTHKLNKHGLTDNGSNTDVNSDSVSRNFFIDSSTAPNPSSTGTDPSDNHNNNQTTNLENDSSPIDLSASPIRTTNPLQNTVTASIYNPEKPISITSSQSMPGFNLNSLWTTRMNFPWPLRFSVDRLNLPSIINNNPRGSVPLDLSMKTEEIENIKKESSCVKLESESMNTYNYRSVLFNAAKRLKVKYQKIYRSRFIQNAFLTSRKNCHFLNHPIPSNAMLDCLSCPLCGKELNDAASFLQHLTQFHDMVLPGSHSNPVADVC 846
[Close]
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000004456.1 (SMESG000004456.1)

HSP 1 Score: 1539.63 bits (3985), Expect = 0.000e+0
Identity = 844/844 (100.00%), Postives = 844/844 (100.00%), Query Frame = 1 
Query:   76 MIDKIMDSQSLTGPSLGQPGPVMISLPDFRTRPESFLNASTAGYFPDNLFLLNPSLFSRAINPSSAFSDLNSNFKLSLGNPNLENEPDKNSEEEDFCEKCQKRFCNKYYLRKHKIDVHKVECDLPNLVDSSIADSQQKSSIFQXXXXXXXXXXXXXXXXXQKSIGPMFPNILLPAPSMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVFSQSGFRISQPGSIISTTEPXXXXXXXXXXXXXXXXXENRMTNISTSIFDNVKNTFINMPLDSKSFPSINSMENTFREQNKPIQQQSVSCNICGIQLTGGDTVLLDHLFTCHNKENINNQSSIPKLLPKNEPTPPVNTTNDSYISPFDAFKSSMAAAKLADRVTCDICHKDLCNKYFLRTHKLKLHGVQTIDSIGRTGNRKEKTGFFDRCQNSMDQLNPNPGFIGTPFSRNPLPDPLLTASLFTNNSKPRPGSPETGCFCPICKRLISLPYFLPLHMWNAHGIGMGSHTSIMPSVCSSRSNLDQNILEPPFIPNNLQSKINPSLFPLSFCNNNIDTGMSSKWYRKSPNQMRVRCDICDKWICNKYFLRTHKLNKHGLTDNGSNTDVNSDSVSRNFFIDSSTAPNPSSTGTDPSDXXXXXXXXXXXXDSSPIDLSASPIRTTNPLQNTVTASIYNPEKPISITSSQSMPGFNLNSLWTTRMNFPWPLRFSVDRLNLPSIINNNPRGSVPLDLSMKTEEIENIKKESSCVKLESESMNTYNYRSVLFNAAKRLKVKYQKIYRSRFIQNAFLTSRKNCHFLNHPIPSNAMLDCLSCPLCGKELNDAASFLQHLTQFHDMVLPGSHSNPVADVC 2607
            MIDKIMDSQSLTGPSLGQPGPVMISLPDFRTRPESFLNASTAGYFPDNLFLLNPSLFSRAINPSSAFSDLNSNFKLSLGNPNLENEPDKNSEEEDFCEKCQKRFCNKYYLRKHKIDVHKVECDLPNLVDSSIADSQQKSSIFQPSIFNPLFSSSFSNFLLQKSIGPMFPNILLPAPSMPSLSQSNSDFNLSSSLTLASAPLLSSTASASNPSPVFSQSGFRISQPGSIISTTEPSLSTNLNTFSNNLVSLNENRMTNISTSIFDNVKNTFINMPLDSKSFPSINSMENTFREQNKPIQQQSVSCNICGIQLTGGDTVLLDHLFTCHNKENINNQSSIPKLLPKNEPTPPVNTTNDSYISPFDAFKSSMAAAKLADRVTCDICHKDLCNKYFLRTHKLKLHGVQTIDSIGRTGNRKEKTGFFDRCQNSMDQLNPNPGFIGTPFSRNPLPDPLLTASLFTNNSKPRPGSPETGCFCPICKRLISLPYFLPLHMWNAHGIGMGSHTSIMPSVCSSRSNLDQNILEPPFIPNNLQSKINPSLFPLSFCNNNIDTGMSSKWYRKSPNQMRVRCDICDKWICNKYFLRTHKLNKHGLTDNGSNTDVNSDSVSRNFFIDSSTAPNPSSTGTDPSDNHNNNQTTNLENDSSPIDLSASPIRTTNPLQNTVTASIYNPEKPISITSSQSMPGFNLNSLWTTRMNFPWPLRFSVDRLNLPSIINNNPRGSVPLDLSMKTEEIENIKKESSCVKLESESMNTYNYRSVLFNAAKRLKVKYQKIYRSRFIQNAFLTSRKNCHFLNHPIPSNAMLDCLSCPLCGKELNDAASFLQHLTQFHDMVLPGSHSNPVADVC
Sbjct:    1 MIDKIMDSQSLTGPSLGQPGPVMISLPDFRTRPESFLNASTAGYFPDNLFLLNPSLFSRAINPSSAFSDLNSNFKLSLGNPNLENEPDKNSEEEDFCEKCQKRFCNKYYLRKHKIDVHKVECDLPNLVDSSIADSQQKSSIFQPSIFNPLFSSSFSNFLLQKSIGPMFPNILLPAPSMPSLSQSNSDFNLSSSLTLASAPLLSSTASASNPSPVFSQSGFRISQPGSIISTTEPSLSTNLNTFSNNLVSLNENRMTNISTSIFDNVKNTFINMPLDSKSFPSINSMENTFREQNKPIQQQSVSCNICGIQLTGGDTVLLDHLFTCHNKENINNQSSIPKLLPKNEPTPPVNTTNDSYISPFDAFKSSMAAAKLADRVTCDICHKDLCNKYFLRTHKLKLHGVQTIDSIGRTGNRKEKTGFFDRCQNSMDQLNPNPGFIGTPFSRNPLPDPLLTASLFTNNSKPRPGSPETGCFCPICKRLISLPYFLPLHMWNAHGIGMGSHTSIMPSVCSSRSNLDQNILEPPFIPNNLQSKINPSLFPLSFCNNNIDTGMSSKWYRKSPNQMRVRCDICDKWICNKYFLRTHKLNKHGLTDNGSNTDVNSDSVSRNFFIDSSTAPNPSSTGTDPSDNHNNNQTTNLENDSSPIDLSASPIRTTNPLQNTVTASIYNPEKPISITSSQSMPGFNLNSLWTTRMNFPWPLRFSVDRLNLPSIINNNPRGSVPLDLSMKTEEIENIKKESSCVKLESESMNTYNYRSVLFNAAKRLKVKYQKIYRSRFIQNAFLTSRKNCHFLNHPIPSNAMLDCLSCPLCGKELNDAASFLQHLTQFHDMVLPGSHSNPVADVC 844
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BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000037063.1 (SMESG000037063.1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.716e-17
Identity = 60/170 (35.29%), Postives = 80/170 (47.06%), Query Frame = 1 
Query: 1156 FDAFKSSMAAAKLADRVTCDICHKDLCNKYFLRTHKLKLHGVQT------------------IDSIGRTGNR----KEKTGFFDRCQNSMDQLNPNPGFIGTPFSRNPLPDPL------LTASLFTNNSKP-----RPGSPETGCFCPICKRLISLPYFLPLHMWNAHGI 1566
             DAFK SMAAAKLADRV+CDIC KDLCNKYFLRTH+ K+HG+++                  ++      NR    ++K    D   N  +Q   N       F +     P+       +   +T +SK      +P + +    C IC RLI   YFL  H +  HGI
Sbjct:  232 LDAFKYSMAAAKLADRVSCDICGKDLCNKYFLRTHRKKVHGIKSDLLKSGIICHNISYPLERLELNSEKNNRPNHSEKKLSIGDSKSNPWNQFELNLDSDRRKFIKLESKYPVSSMPHSFSNKQYTFDSKKCKWIRKPLANKVK--CDICDRLICNKYFLKTHKYKKHGI 399

HSP 2 Score: 70.8626 bits (172), Expect = 2.285e-12
Identity = 61/188 (32.45%), Postives = 81/188 (43.09%), Query Frame = 1 
Query: 1495 CPICKRLISLPYFLPLHMWNAHGI-------GMGSHTSIMP---------------------SVCSSRSN------LDQNILEPPFIPNNLQSKINPSLFPLSFCNNNID-TGMSSKWYRKSPNQMRVRCDICDKWICNKYFLRTHKLNKHGLTDNGSNTDVNSDSVSRNFFIDSS--TAPNPSSTGT 1947
            C IC + +   YFL  H    HGI       G+  H    P                     S+  S+SN      L+ +     FI   L+SK   S  P SF N          KW RK P   +V+CDICD+ ICNKYFL+THK  KHG+ D   +  +NS+ ++     DS   T+ N  +T T
Sbjct:  250 CDICGKDLCNKYFLRTHRKKVHGIKSDLLKSGIICHNISYPLERLELNSEKNNRPNHSEKKLSIGDSKSNPWNQFELNLDSDRRKFIK--LESKYPVSSMPHSFSNKQYTFDSKKCKWIRK-PLANKVKCDICDRLICNKYFLKTHKYKKHGIQDQTLSLPINSNEINYKISFDSDIITSKNHLTTCT 434

HSP 3 Score: 57.7658 bits (138), Expect = 2.733e-8
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:  322 LENEPDKNSEEEDFCEKCQKRFCNKYYLRKHKIDVHKV 435
            +ENE    +  EDFC  CQK FCNKYYL+KHK+DVHK 
Sbjct:   18 MENEKSNFNNNEDFCSICQKHFCNKYYLKKHKLDVHKT 55

HSP 4 Score: 55.0694 bits (131), Expect = 2.014e-7
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1 
Query: 1120 PVNTTNDSYISPFDAFKSSMAAAKLADRVTCDICHKDLCNKYFLRTHKLKLHGVQ 1284
            P + +N  Y   FD+ K       LA++V CDIC + +CNKYFL+THK K HG+Q
Sbjct:  348 PHSFSNKQY--TFDSKKCKWIRKPLANKVKCDICDRLICNKYFLKTHKYKKHGIQ 400
The following BLAST results are available for this feature:
BLAST of C2H2-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4
Match NameE-valueIdentityDescription
die-11.090e-675.00Dorsal Intercalation and Elongation defect [Sourc... [more]
die-11.090e-675.00Dorsal Intercalation and Elongation defect [Sourc... [more]
die-11.197e-675.00Dorsal Intercalation and Elongation defect [Sourc... [more]
die-11.197e-675.00Dorsal Intercalation and Elongation defect [Sourc... [more]
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BLAST of C2H2-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
R7V1S15.779e-2434.23Uncharacterized protein OS=Capitella teleta OX=283... [more]
V4AV679.774e-2435.37Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
A0A0L8FT796.006e-2332.49Uncharacterized protein OS=Octopus bimaculoides OX... [more]
A0A0R3TU761.455e-1433.66Uncharacterized protein OS=Rodentolepis nana OX=10... [more]
A0A0R3S8K32.538e-1435.33Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
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BLAST of C2H2-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000004456.10.000e+0100.00SMESG000004456.1[more]
SMESG000004456.10.000e+0100.00SMESG000004456.1[more]
SMESG000037063.11.716e-1735.29SMESG000037063.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30024150 ID=SMED30024150|Name=C2H2-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2694bp
ATTTTTCGAAAAATTTTGTGAAGTAAAACTAAATCGAAATTTTTTTTTAA
AAAAATTTTCTCAATTTTAATGAATATGATAGATAAGATAATGGATTCTC
AATCTTTGACTGGTCCCAGTCTTGGACAACCCGGCCCGGTAATGATATCG
TTACCGGATTTCCGAACGAGGCCTGAATCATTTTTAAATGCTTCCACTGC
CGGTTATTTTCCCGATAATCTTTTCCTGCTGAATCCCAGTCTGTTTTCAC
GAGCAATTAATCCATCGTCGGCATTTTCCGATTTGAATTCCAATTTCAAA
CTATCTTTGGGCAATCCAAACTTAGAAAATGAGCCCGACAAAAATTCTGA
AGAAGAGGATTTTTGTGAAAAATGTCAAAAACGATTCTGCAATAAATACT
ATTTGAGAAAACACAAAATCGATGTTCACAAAGTTGAATGTGATTTACCA
AATCTAGTCGATTCATCAATCGCTGATTCCCAACAGAAATCCTCCATATT
CCAACCATCAATATTCAATCCGCTTTTCAGTTCCTCATTTTCAAATTTTC
TTTTACAGAAATCCATTGGACCGATGTTTCCCAATATTCTTCTTCCAGCT
CCATCAATGCCTTCACTTTCCCAGTCGAATTCTGATTTCAATTTATCATC
ATCATTAACACTAGCATCAGCCCCACTGTTATCCTCAACGGCATCGGCTT
CTAATCCATCCCCCGTGTTTTCTCAATCAGGTTTCCGAATTTCCCAGCCT
GGTTCAATTATTTCAACAACAGAACCTTCATTGTCAACGAATCTTAACAC
GTTCTCTAACAATCTGGTTTCATTGAATGAAAATAGAATGACAAATATTT
CAACATCAATTTTCGATAATGTCAAAAACACTTTTATTAACATGCCACTC
GATTCAAAGTCATTTCCATCGATAAATTCAATGGAAAACACTTTTAGAGA
GCAAAACAAACCGATACAACAACAATCAGTCTCGTGCAATATATGTGGAA
TTCAGTTGACAGGGGGGGACACAGTTTTATTGGACCACCTTTTCACATGT
CACAACAAAGAGAACATCAACAATCAATCATCAATTCCAAAATTATTGCC
AAAAAATGAACCAACTCCCCCCGTAAACACAACAAACGATTCATATATTT
CTCCATTTGATGCTTTTAAAAGTAGCATGGCAGCGGCAAAACTAGCTGAC
CGTGTAACGTGTGATATCTGCCATAAAGACCTTTGCAATAAGTATTTTTT
GAGAACCCACAAATTAAAATTGCATGGTGTGCAAACAATCGATTCGATTG
GTCGAACTGGAAACCGAAAAGAGAAAACCGGTTTTTTTGATCGCTGTCAA
AATTCAATGGATCAATTGAACCCAAATCCCGGGTTTATTGGTACCCCGTT
TTCCAGAAACCCCTTGCCCGATCCTCTATTGACTGCTTCTTTATTTACCA
ATAATTCCAAACCGAGACCCGGATCACCGGAAACGGGCTGTTTCTGTCCG
ATTTGTAAGCGACTGATATCGTTGCCGTATTTTCTTCCACTTCACATGTG
GAATGCTCACGGAATCGGTATGGGATCCCACACGTCAATTATGCCTTCGG
TATGCAGTTCACGATCAAATCTCGATCAAAATATCTTAGAACCACCATTC
ATTCCGAATAATTTACAATCAAAAATCAACCCGAGTTTATTTCCACTTTC
TTTCTGTAACAACAACATTGATACCGGAATGAGTTCAAAATGGTATAGGA
AATCTCCTAATCAAATGAGAGTGCGCTGTGATATCTGTGATAAATGGATA
TGCAATAAATATTTTTTACGAACCCATAAGTTAAACAAACACGGCTTGAC
TGATAATGGCAGCAATACGGATGTCAATTCAGACTCTGTGTCAAGAAACT
TTTTTATTGATTCAAGCACAGCTCCAAATCCTTCGAGCACTGGAACAGAT
CCGTCAGATAATCACAATAATAACCAAACTACAAACTTAGAGAACGATTC
CTCCCCTATTGACTTGTCTGCAAGTCCTATTAGAACGACAAATCCTTTAC
AGAACACAGTTACAGCAAGTATTTACAATCCGGAGAAACCAATATCAATT
ACATCATCACAGTCGATGCCAGGTTTTAACTTGAATTCTTTATGGACCAC
AAGAATGAATTTTCCTTGGCCTCTTAGGTTTTCAGTGGATAGGTTAAACT
TACCATCGATCATCAATAACAATCCCAGAGGATCAGTGCCACTCGATTTA
TCAATGAAAACCGAAGAGATTGAAAATATCAAAAAAGAAAGTTCCTGTGT
AAAATTAGAGTCAGAATCCATGAATACCTATAACTATCGGTCGGTATTAT
TCAATGCAGCAAAGCGATTGAAGGTCAAATACCAAAAGATCTACCGATCT
CGGTTTATTCAGAATGCCTTTTTAACGTCGAGAAAAAACTGCCACTTTCT
AAATCATCCAATTCCATCTAATGCAATGTTGGATTGCCTGAGTTGTCCGT
TGTGCGGCAAAGAACTCAATGATGCTGCGTCATTTCTGCAGCATTTAACT
CAATTCCATGACATGGTTCTGCCAGGCAGTCATTCCAATCCAGTTGCCGA
TGTTTGTTGAATACCAATTTTATCAAAAGCAAAAATCTAAAATACAATGT
ACAGAAATTAAATAATGTTCTTTTTACTCATTTATGATCCACGG
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protein sequence of SMED30024150-orf-1

>SMED30024150-orf-1 ID=SMED30024150-orf-1|Name=SMED30024150-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=847bp
MNMIDKIMDSQSLTGPSLGQPGPVMISLPDFRTRPESFLNASTAGYFPDN
LFLLNPSLFSRAINPSSAFSDLNSNFKLSLGNPNLENEPDKNSEEEDFCE
KCQKRFCNKYYLRKHKIDVHKVECDLPNLVDSSIADSQQKSSIFQPSIFN
PLFSSSFSNFLLQKSIGPMFPNILLPAPSMPSLSQSNSDFNLSSSLTLAS
APLLSSTASASNPSPVFSQSGFRISQPGSIISTTEPSLSTNLNTFSNNLV
SLNENRMTNISTSIFDNVKNTFINMPLDSKSFPSINSMENTFREQNKPIQ
QQSVSCNICGIQLTGGDTVLLDHLFTCHNKENINNQSSIPKLLPKNEPTP
PVNTTNDSYISPFDAFKSSMAAAKLADRVTCDICHKDLCNKYFLRTHKLK
LHGVQTIDSIGRTGNRKEKTGFFDRCQNSMDQLNPNPGFIGTPFSRNPLP
DPLLTASLFTNNSKPRPGSPETGCFCPICKRLISLPYFLPLHMWNAHGIG
MGSHTSIMPSVCSSRSNLDQNILEPPFIPNNLQSKINPSLFPLSFCNNNI
DTGMSSKWYRKSPNQMRVRCDICDKWICNKYFLRTHKLNKHGLTDNGSNT
DVNSDSVSRNFFIDSSTAPNPSSTGTDPSDNHNNNQTTNLENDSSPIDLS
ASPIRTTNPLQNTVTASIYNPEKPISITSSQSMPGFNLNSLWTTRMNFPW
PLRFSVDRLNLPSIINNNPRGSVPLDLSMKTEEIENIKKESSCVKLESES
MNTYNYRSVLFNAAKRLKVKYQKIYRSRFIQNAFLTSRKNCHFLNHPIPS
NAMLDCLSCPLCGKELNDAASFLQHLTQFHDMVLPGSHSNPVADVC*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000011protonephridial progenitor cell
PLANA:0000020protonephridia
PLANA:0000099neuron
PLANA:0000418head
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR015880Znf_C2H2-like
IPR007087Znf_C2H2
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 304..328
e-value: 100.0
score: 4.4
coord: 97..120
e-value: 10.0
score: 13.2
coord: 807..830
e-value: 0.26
score: 20.4
coord: 568..591
e-value: 2.0
score: 17.4
coord: 379..402
e-value: 9.0
score: 13.7
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 809..830
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 381..402
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 99..120
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 97..125
score: 8.787
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 807..835
score: 8.725
NoneNo IPR availablePANTHERPTHR21190UNCHARACTERIZEDcoord: 475..598
coord: 226..505
coord: 566..616