Soluble guanylate cyclase gcy

Overview
NameSoluble guanylate cyclase gcy
Smed IDSMED30024148
Length (bp)1189
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Soluble guanylate cyclase gcy (SMED30024148) t-SNE clustered cells

Violin plots show distribution of expression levels for Soluble guanylate cyclase gcy (SMED30024148) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Soluble guanylate cyclase gcy (SMED30024148) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Soluble guanylate cyclase gcy (SMED30024148) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30024148

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30024148SMESG000045324.1 SmedASXL_009861SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
zeta neoblastSMED30024148SMESG000045324.1 dd_Smed_v4_10514_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
neoblastSMED30024148SMESG000045324.1 SMED_10059_V2_1GPL14150_gene_modelsPMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
neoblastSMED30024148SMESG000045324.1 SMED_10059_V2_1GPL14150PMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of Soluble guanylate cyclase gcy vs. TrEMBL
Match: G4LU96 (Soluble guanylate cyclase gcy, putative OS=Schistosoma mansoni OX=6183 GN=Smp_211220 PE=4 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 5.813e-24
Identity = 94/328 (28.66%), Postives = 152/328 (46.34%), Query Frame = 2 
Query:  155 ILLETKDFYLIDKPAGVSLF-------RSKPKGDPNYVSKCSEFAVQDIIPDL---CSKLEIESQFAN-----------------ISSELPWNYSGLFVFSKNKQHYETSKKFFKTSSYGMGSGYISQSYRCLCWNRPINNQLDTIPFSFRKFYPDKTDYQNSIIYKSKHSSKNEINTK-----SVWTKHIGHDVVSYGNLENDKIVLIDVKCNSSYRGLVQLYLLHQGSIVVGEFLQASRLVTDGVNNDICILPPEKANAAKPLPIQFRQRLGTFGRELNKLPLHIHCIELLVP----SNDRKPKTESYLSESKFNFNSRPGITINW 1030
            I+  TK F +IDKP  +S++        +    +P   S  S+  + D +P L    + LE E Q  +                 I   LP  YSGL +  +N+++   ++KF+KT+  G  +  + Q    +CW +P   Q+ + P SF    P      +  ++     S NEI+        +  K + H ++S G+    K  L+ ++ NS YRGL ++YLL++G  VVGE  QASRLV  G++    +LPP K      +P++ RQ LG     L  +P+HIH   L +P     N      +SY+ +    F ++ G  I +
Sbjct:  785 IVALTKHFVVIDKPPNLSVWGHSLASREAITMINPKLCSA-SDLGINDCLPQLNTIITSLEQEQQDTSNDDSSNLSRSVEIPKLYIIESLPAAYSGLILLGRNEKYTNAARKFYKTAMLGGTTWDLYQKLLIVCWGKP--QQIQSKPKSF----PIAAYALHDHLHVGYRPSPNEISKSLKLKGVILEKLVHHTILSEGS---KKSSLVKLETNSLYRGLPEVYLLYEGCTVVGETFQASRLVNTGISP--IVLPPSKIRLNYSIPLEQRQILGQSNNNLEDIPVHIHRSHLYLPIPFYMNSSNLCIKSYVKKPSHLFKTKSGTMIQY 1100
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BLAST of Soluble guanylate cyclase gcy vs. TrEMBL
Match: A0A5K4F0L8 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.466e-24
Identity = 93/323 (28.79%), Postives = 150/323 (46.44%), Query Frame = 2 
Query:  155 ILLETKDFYLIDKPAGVSLF-------RSKPKGDPNYVSKCSEFAVQDIIPDL---CSKLEIESQFAN-----------------ISSELPWNYSGLFVFSKNKQHYETSKKFFKTSSYGMGSGYISQSYRCLCWNRPINNQLDTIPFSFRKFYPDKTDYQNSIIYKSKHSSKNEINTK-----SVWTKHIGHDVVSYGNLENDKIVLIDVKCNSSYRGLVQLYLLHQGSIVVGEFLQASRLVTDGVNNDICILPPEKANAAKPLPIQFRQRLGTFGRELNKLPLHIHCIELLVP----SNDRKPKTESYLSESKFNFNSRPG 1015
            I+  TK F +IDKP  +S++        +    +P   S  S+  + D +P L    + LE E Q  +                 I   LP  YSGL +  +N+++   ++KF+KT+  G  +  + Q    +CW +P   Q+ + P SF    P      +  ++     S NEI+        +  K + H ++S G+    K  L+ ++ NS YRGL ++YLL++G  VVGE  QASRLV  G++    +LPP K      +P++ RQ LG     L  +P+HIH   L +P     N      +SY+ +    F ++ G
Sbjct:   94 IVALTKHFVVIDKPPNLSVWGHSLASREAISMINPKLCS-ASDLGINDCLPQLNTIITSLEQEQQDTSNNDSSNLSRSVEIPKLYIIESLPAAYSGLILLGRNEKYTNAARKFYKTAMLGGTTWDLYQKLLIVCWGKP--QQIQSKPKSF----PIAAYALHDHLHVGYRPSPNEISKSLKLKGVILEKLVHHTILSEGS---KKSSLVKLETNSLYRGLPEVYLLYEGCTVVGETFQASRLVNTGISP--IVLPPSKIRLNYSIPLEQRQILGQSNNNLEDIPVHIHRSHLYLPIPFYMNSSNLCIKSYVKKPSHLFKTKSG 404
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BLAST of Soluble guanylate cyclase gcy vs. TrEMBL
Match: A0A564Z2D7 (Uncharacterized protein (Fragment) OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS11744 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.627e-22
Identity = 98/383 (25.59%), Postives = 167/383 (43.60%), Query Frame = 2 
Query:  143 IFDNILLETKDFYLIDKPAGVSLFRSKPKGDP---NYVSKCSEFAVQDIIPDLCSKLE----------------------------IESQFAN---------ISSELPWNYSGLFVFSKNKQHYETSKKFFKTSSYGMGSGYISQSYRCLCWNRPINNQLDTIPFSFRKFYPDKTDYQNSIIYKSKHSSKNEINTKS-----VWTKHIGHDVVSYGNLENDKIVLIDVKCNSSYRGLVQLYLLHQGSIVVGEFLQASRLVTD-GVNNDICILPPEKANAAKPLPIQFRQRLGTFGRELNKLPLHIHCIELLVP---SNDRKPKTESYLSESKFN--FNSRPGITI----NWDHSLKLNVC----SYHSVPDYYSEIMKHFNIS 1114
            +   ++   ++F +IDKPA +S++       P      S+    +V++ +P L   L                              E  F+N         I   LP  YSGL + + +K + + ++ F++ ++     G I Q++   CW  P  +  +   F    +   K     S+ Y+    + ++I ++S     +  KH+GH V+S G+ +     LI + CNS Y GL ++YLLH+G  V+GE +QASRLV + GV     +LPP  A    P+  +  +  G        +P HIH  +LL+P   S   K +  S   +S F   FN++ G  I     +  + K NVC    +  S+P Y+   ++   +S
Sbjct:   68 LVSRVVAYGRNFLVIDKPANLSVWGHAYSASPLISGATSQSPPLSVRECLPHLRDVLSGSNPFSLTNPSDSSRPLSVLVSGKGNKHSERPFSNAWAPPSEIFIVEALPAAYSGLILLATSKAYADFARSFYRDATKNTFPGSIYQTFHIACWGHPSRDHAENERFPIAVY---KASESISVAYRP---TDDKITSRSNKRGALVFKHVGHSVLSRGSNQGSG-SLIKLVCNSCYAGLPEVYLLHEGCEVIGEDIQASRLVENAGVP---MVLPPAMAKLGAPIRTELLKIFGVKNIPRAAIPTHIHRSQLLIPSPLSTSSKVEMFSRRHQSPFGWIFNTQEGSPILSWKTYPANEKKNVCFLSAASPSLPSYFVRTLEKLGLS 440
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BLAST of Soluble guanylate cyclase gcy vs. TrEMBL
Match: A0A183R269 (Uncharacterized protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.197e-22
Identity = 70/210 (33.33%), Postives = 108/210 (51.43%), Query Frame = 2 
Query:  329 ISSELPWNYSGLFVFSKNKQHYETSKKFFKTSSYGMGSGYISQSYRCLCWNRPINNQLDTIPFSFRKFYPDKTDYQNSIIYKSKHSSKNEINTK-----SVWTKHIGHDVVSYGNLENDKIVLIDVKCNSSYRGLVQLYLLHQGSIVVGEFLQASRLVTDGVNNDICILPPEKANAAKPLPIQFRQRLGTFGRELNKLPLHIHCIELLVP 943
            I   LP  YSGL +  +N+++   ++KF+KT+  G  +  + Q    +CW +P   Q+ + P SF    P      +  ++     S NEI+        +  K + H ++S G     K  LI ++ NS YRGL ++YLL++G  VVGE  QASRLV  G++    +LPP K      +P++ RQ LG     L  +P+HIH   L +P
Sbjct:   57 IIESLPAAYSGLILLGRNEKYTNAARKFYKTAMLGGTTWDLYQKLLIVCWGKP--QQIQSKPTSF----PIAAYALHDRLHVGYRPSPNEISKSLKLKGVILEKLVHHTILSEGP---KKSSLIKLETNSLYRGLPEVYLLYEGCTVVGETFQASRLVNTGISP--IVLPPSKIRLNYSIPLEQRQILGQSDTNLEDIPVHIHRSHLYLP 255
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BLAST of Soluble guanylate cyclase gcy vs. TrEMBL
Match: A0A4Z2CWT5 (Soluble guanylate cyclase 88E isoform 3 OS=Schistosoma japonicum OX=6182 GN=EWB00_006867 PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.378e-22
Identity = 84/298 (28.19%), Postives = 144/298 (48.32%), Query Frame = 2 
Query:  155 ILLETKDFYLIDKPAGVSLFRSKPKG-------DPNYVSKCSEFAVQDIIPDL----------------------CSKLEIESQFANISSELPWNYSGLFVFSKNKQHYETSKKFFKTSSYGMGSGYISQSYRCLCWNRPINNQLDTIPFSFRKFYPDKTDYQNSIIYKSKHSSKNEINTK-----SVWTKHIGHDVVSYGNLENDKIVLIDVKCNSSYRGLVQLYLLHQGSIVVGEFLQASRLVTDGVNNDICILPPEKANAAKPLPIQFRQRLGTFGRE-LNKLPLHIHCIELLVP 943
            I+  TK F +IDKP  +S++             +P  VS  S+  + D +P L                      C+ +E+   +  I   LP  YSGL +  +N+++   ++KF+K+++ G     + Q    +CW +P   + D+IP SF    P  +   N  +      S NEI+        +  K + H ++S G+   D   L+ ++ NS++RGL ++YLL++G  VVGE  QASRL+  G++    +LPP +      +P++ R+ LG    + L+ +P+HIH   L +P
Sbjct:  628 IVAITKYFVVIDKPPNLSVWGHSLTSREAISVINPKLVST-SDLGINDCLPQLSNIITSLEKEQHHNFNNDLSNSCTTVEVPKLY--IIEALPAAYSGLILLGRNEKYTNAARKFYKSATLGGTPWELYQKLLIVCWGKP--QKKDSIPASF----PIASYRVNDHLRVGYRPSPNEISGSLIKKGVILQKSVQHTILSEGH---DNCSLLKLETNSTFRGLPEVYLLYEGCAVVGETFQASRLLNTGLSP--VVLPPSQIRLNYSIPLKHRRILGQSNADNLDFIPVHIHRSHLYLP 911
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BLAST of Soluble guanylate cyclase gcy vs. Planmine SMEST
Match: SMESG000045324.1 (SMESG000045324.1)

HSP 1 Score: 767.689 bits (1981), Expect = 0.000e+0
Identity = 374/375 (99.73%), Postives = 374/375 (99.73%), Query Frame = 2 
Query:    2 MNLNKSLRTLKISECNSIFRGSIFRYLSQFKANEIDFEDRKQNFINTIFDNILLETKDFYLIDKPAGVSLFRSKPKGDPNYVSKCSEFAVQDIIPDLCSKLEIESQFANISSELPWNYSGLFVFSKNKQHYETSKKFFKTSSYGMGSGYISQSYRCLCWNRPINNQLDTIPFSFRKFYPDKTDYQNSIIYKSKHSSKNEINTKSVWTKHIGHDVVSYGNLENDKIVLIDVKCNSSYRGLVQLYLLHQGSIVVGEFLQASRLVTDGVNNDICILPPEKANAAKPLPIQFRQRLGTFGRELNKLPLHIHCIELLVPSNDRKPKTESYLSESKFNFNSRPGITINWDHSLKLNVCSYHSVPDYYSEIMKHFNISLPLN 1126
            MNLNKSLRTLKISECNSIFRGSIFRYLSQFKANEIDFEDRKQNFINTIFDNILLETKDFYLIDKPAGVSLFRSKPKGDPNYVSKCSEFAVQDIIPDLCSKLEIESQFANISSELPWNYSGLFVFSKNKQHYETSKKFFKTSSYGMGSGYISQSYRCLCWNRPINNQLDTIPFSFRKFYPDKTD QNSIIYKSKHSSKNEINTKSVWTKHIGHDVVSYGNLENDKIVLIDVKCNSSYRGLVQLYLLHQGSIVVGEFLQASRLVTDGVNNDICILPPEKANAAKPLPIQFRQRLGTFGRELNKLPLHIHCIELLVPSNDRKPKTESYLSESKFNFNSRPGITINWDHSLKLNVCSYHSVPDYYSEIMKHFNISLPLN
Sbjct:    1 MNLNKSLRTLKISECNSIFRGSIFRYLSQFKANEIDFEDRKQNFINTIFDNILLETKDFYLIDKPAGVSLFRSKPKGDPNYVSKCSEFAVQDIIPDLCSKLEIESQFANISSELPWNYSGLFVFSKNKQHYETSKKFFKTSSYGMGSGYISQSYRCLCWNRPINNQLDTIPFSFRKFYPDKTDNQNSIIYKSKHSSKNEINTKSVWTKHIGHDVVSYGNLENDKIVLIDVKCNSSYRGLVQLYLLHQGSIVVGEFLQASRLVTDGVNNDICILPPEKANAAKPLPIQFRQRLGTFGRELNKLPLHIHCIELLVPSNDRKPKTESYLSESKFNFNSRPGITINWDHSLKLNVCSYHSVPDYYSEIMKHFNISLPLN 375
The following BLAST results are available for this feature:
BLAST of Soluble guanylate cyclase gcy vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Soluble guanylate cyclase gcy vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Soluble guanylate cyclase gcy vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Soluble guanylate cyclase gcy vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Soluble guanylate cyclase gcy vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Soluble guanylate cyclase gcy vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Soluble guanylate cyclase gcy vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Soluble guanylate cyclase gcy vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
G4LU965.813e-2428.66Soluble guanylate cyclase gcy, putative OS=Schisto... [more]
A0A5K4F0L87.466e-2428.79Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
A0A564Z2D72.627e-2225.59Uncharacterized protein (Fragment) OS=Hymenolepis ... [more]
A0A183R2694.197e-2233.33Uncharacterized protein OS=Schistosoma rodhaini OX... [more]
A0A4Z2CWT54.378e-2228.19Soluble guanylate cyclase 88E isoform 3 OS=Schisto... [more]
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BLAST of Soluble guanylate cyclase gcy vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Soluble guanylate cyclase gcy vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Soluble guanylate cyclase gcy vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Soluble guanylate cyclase gcy vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Soluble guanylate cyclase gcy vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Soluble guanylate cyclase gcy vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000045324.10.000e+099.73SMESG000045324.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30024148 ID=SMED30024148|Name=Soluble guanylate cyclase gcy|organism=Schmidtea mediterranea sexual|type=transcript|length=1189bp
TATGAATTTGAATAAGTCATTGAGAACTCTTAAAATTTCTGAATGCAATT
CAATATTTAGAGGTTCAATATTCAGATATTTAAGTCAATTTAAAGCTAAT
GAAATTGACTTCGAAGATAGAAAGCAAAATTTTATAAATACTATTTTTGA
CAATATACTCTTGGAAACTAAAGATTTTTATTTAATTGATAAACCTGCAG
GGGTTTCTTTATTTAGAAGTAAACCGAAAGGAGATCCAAACTATGTTAGT
AAATGCTCTGAATTTGCAGTTCAAGATATAATTCCTGACTTATGTTCCAA
ATTGGAAATTGAAAGCCAATTTGCAAATATATCTTCAGAACTGCCATGGA
ATTATAGTGGCTTGTTTGTTTTTTCAAAAAATAAGCAGCATTACGAAACG
TCGAAAAAATTTTTTAAAACAAGTTCTTATGGAATGGGGTCAGGTTACAT
AAGCCAGTCCTACCGATGTCTGTGCTGGAATAGGCCAATCAACAACCAAT
TGGACACAATTCCGTTTAGTTTTAGGAAATTTTACCCAGATAAAACAGAT
TATCAAAATTCCATCATTTACAAATCCAAACATTCATCAAAGAATGAAAT
TAATACGAAATCGGTATGGACAAAACATATTGGACATGATGTAGTGTCCT
ATGGGAACCTCGAAAATGATAAAATCGTTTTGATTGATGTTAAATGCAAT
TCCAGCTATAGAGGCTTGGTCCAATTGTATTTGTTACACCAAGGATCTAT
TGTAGTCGGTGAATTCCTGCAGGCGTCTCGATTAGTCACAGATGGTGTTA
ATAATGATATCTGTATATTACCACCAGAAAAGGCTAATGCTGCTAAGCCG
TTACCCATCCAATTTCGACAACGACTTGGTACTTTTGGTAGAGAATTAAA
CAAATTACCTCTTCATATTCATTGCATCGAATTGTTAGTTCCTTCAAATG
ATAGGAAACCAAAAACCGAATCCTATCTTAGTGAAAGCAAATTCAATTTC
AATTCTCGTCCGGGAATTACGATAAATTGGGATCATTCATTGAAGTTGAA
CGTTTGTAGCTATCACTCTGTGCCGGATTACTATTCTGAAATCATGAAGC
ATTTCAATATTAGTTTGCCATTGAATTAAATACATTATAATATTACTCTT
CATTTATTGGATTTAATGTGACGTTTTAGGTGATCAGGC
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protein sequence of SMED30024148-orf-1

>SMED30024148-orf-1 ID=SMED30024148-orf-1|Name=SMED30024148-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=376bp
MNLNKSLRTLKISECNSIFRGSIFRYLSQFKANEIDFEDRKQNFINTIFD
NILLETKDFYLIDKPAGVSLFRSKPKGDPNYVSKCSEFAVQDIIPDLCSK
LEIESQFANISSELPWNYSGLFVFSKNKQHYETSKKFFKTSSYGMGSGYI
SQSYRCLCWNRPINNQLDTIPFSFRKFYPDKTDYQNSIIYKSKHSSKNEI
NTKSVWTKHIGHDVVSYGNLENDKIVLIDVKCNSSYRGLVQLYLLHQGSI
VVGEFLQASRLVTDGVNNDICILPPEKANAAKPLPIQFRQRLGTFGRELN
KLPLHIHCIELLVPSNDRKPKTESYLSESKFNFNSRPGITINWDHSLKLN
VCSYHSVPDYYSEIMKHFNISLPLN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR000551MerR-type_HTH_dom
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: biological process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.2350.10coord: 46..325
e-value: 2.6E-6
score: 29.1