SMED30024032

Overview


Name	SMED30024032
Smed ID	SMED30024032
Length (bp)	393

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30024032 (SMED30024032) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30024032 (SMED30024032) in cells (dots) of each of the 12 neoblast clusters.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30024032

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30024032	SMESG000081731.1 SMESG000081727.1	SmedASXL_018855	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
nervous system	SMED30024032	SMESG000081731.1 SMESG000081727.1	dd_Smed_v4_622_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30024032	SMESG000081731.1 SMESG000081727.1	dd_Smed_v4_622_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30024032	SMESG000081731.1 SMESG000081727.1	dd_Smed_v4_622_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Alignments

SMED30024032 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.000327:147199..147591 +	1947

Homology

[Close]

BLAST of SMED30024032 vs. Ensembl Human
Match: SNRPG (small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:HGNC:11163])

HSP 1 Score: 76.6406 bits (187), Expect = 4.518e-19
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            ++MDK+++               +KLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:   11 KFMDKKLS---------------LKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of SMED30024032 vs. Ensembl Human
Match: SNRPG (small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:HGNC:11163])

HSP 1 Score: 76.2554 bits (186), Expect = 5.987e-19
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -2

Query:   48 YMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 287
            +MDK+++               +KLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:    4 FMDKKLS---------------LKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 68

[Close]

BLAST of SMED30024032 vs. Ensembl Human
Match: SNRPG (small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:HGNC:11163])

HSP 1 Score: 75.8702 bits (185), Expect = 8.537e-19
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = -2

Query:   48 VKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 221
            +KLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:    7 LKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 64

[Close]

Query:   48 VKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 221
            +KLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:    7 LKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 64

[Close]

Query:   48 VKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 221
            +KLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:    7 LKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 64

[Close]

BLAST of SMED30024032 vs. Ensembl Celegans
Match: snr-7 (Probable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:Q9N4G9])

HSP 1 Score: 78.1814 bits (191), Expect = 4.853e-20
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            +YMDK M                +KLNG+RRV GI+RGFDPFMN+V++ AVE  KD   VN+G  VIRGNS+ I+E  +R+
Sbjct:   11 KYMDKEMD---------------LKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGNSVVIMEPKERI 76

[Close]

BLAST of SMED30024032 vs. Ensembl Fly
Match: SNRPG (gene:FBgn0261791 transcript:FBtr0112993)

HSP 1 Score: 82.8037 bits (203), Expect = 8.692e-22
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            +YMDKRM               ++KLNG R V GI+RGFDPFMN+VL++ VE  KDN + NIG +VIRGNSI ++EA+DRV
Sbjct:   11 KYMDKRM---------------MLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76

[Close]

BLAST of SMED30024032 vs. Ensembl Fly
Match: SNRPG (gene:FBgn0261791 transcript:FBtr0074377)

HSP 1 Score: 82.8037 bits (203), Expect = 8.692e-22
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            +YMDKRM               ++KLNG R V GI+RGFDPFMN+VL++ VE  KDN + NIG +VIRGNSI ++EA+DRV
Sbjct:   11 KYMDKRM---------------MLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76

[Close]

BLAST of SMED30024032 vs. Ensembl Fly
Match: LSm7 (gene:FBgn0261068 transcript:FBtr0343770)

HSP 1 Score: 42.743 bits (99), Expect = 6.193e-6
Identity = 23/69 (33.33%), Postives = 38/69 (55.07%), Query Frame = -2

Query:   48 IIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEV---------NIGTIVIRGNSISILEAVDRV 227
            I VK  G R   GI++G+D  +N+VL+N VE  +D+ E          ++G +V RG ++ ++   D V
Sbjct:   32 IRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLGLVVCRGTALVLICPQDGV 100

[Close]

BLAST of SMED30024032 vs. Ensembl Fly
Match: LSm7 (gene:FBgn0261068 transcript:FBtr0080934)

HSP 1 Score: 42.743 bits (99), Expect = 6.193e-6
Identity = 23/69 (33.33%), Postives = 38/69 (55.07%), Query Frame = -2

Query:   48 IIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEV---------NIGTIVIRGNSISILEAVDRV 227
            I VK  G R   GI++G+D  +N+VL+N VE  +D+ E          ++G +V RG ++ ++   D V
Sbjct:   32 IRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLGLVVCRGTALVLICPQDGV 100

[Close]

BLAST of SMED30024032 vs. Ensembl Fly
Match: LSm7 (gene:FBgn0261068 transcript:FBtr0308804)

HSP 1 Score: 42.743 bits (99), Expect = 6.193e-6
Identity = 23/69 (33.33%), Postives = 38/69 (55.07%), Query Frame = -2

Query:   48 IIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEV---------NIGTIVIRGNSISILEAVDRV 227
            I VK  G R   GI++G+D  +N+VL+N VE  +D+ E          ++G +V RG ++ ++   D V
Sbjct:   32 IRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLGLVVCRGTALVLICPQDGV 100

[Close]

BLAST of SMED30024032 vs. Ensembl Zebrafish
Match: snrpg (small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105])

HSP 1 Score: 72.0182 bits (175), Expect = 1.844e-17
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            ++MDK+++               +KLNG R V+GI+RGFDPFMN+V+++ +E+    Q   IG +VIRGNSI +LEA++RV
Sbjct:   11 KFMDKKLS---------------LKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNTIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of SMED30024032 vs. Ensembl Zebrafish
Match: lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-030131-8284])

HSP 1 Score: 45.4394 bits (106), Expect = 7.497e-7
Identity = 23/68 (33.82%), Postives = 37/68 (54.41%), Query Frame = -2

Query:   54 NYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EVNIGTIVIRGNSISILEAVD 233
             +I VK  G R   G+++GFDP +N+VL+  +E   D D+Q         +G +V RG S+ ++   D
Sbjct:   21 KHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQD 88

[Close]

BLAST of SMED30024032 vs. Ensembl Xenopus
Match: snrpg (small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:100125174])

HSP 1 Score: 72.4034 bits (176), Expect = 2.209e-17
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            ++MDK+++               +KLNG R V+GI+RGFDPFMN+V++   EI     +  IG +VIRGNSI +LEA++RV
Sbjct:   11 KFMDKKLS---------------LKLNGGRHVQGILRGFDPFMNLVIDECTEISGGGHQNTIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of SMED30024032 vs. Ensembl Xenopus
Match: lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:100127774])

HSP 1 Score: 44.669 bits (104), Expect = 2.030e-6
Identity = 27/86 (31.40%), Postives = 42/86 (48.84%), Query Frame = -2

Query:   54 DKRMTRKYIFI*YKTY--NYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EVNIGTIVIRGNSISILEAVD 281
            DK   +K   +    Y    I VK  G R   G+++GFDP +N+VL+  +E   D D+Q         +G +V RG S+ ++   D
Sbjct:    3 DKEKKKKESILDLSKYIDKAIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQD 88

[Close]

BLAST of SMED30024032 vs. Ensembl Xenopus
Match: lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:100127774])

HSP 1 Score: 44.669 bits (104), Expect = 2.185e-6
Identity = 23/66 (34.85%), Postives = 36/66 (54.55%), Query Frame = -2

Query:   54 IIVKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EVNIGTIVIRGNSISILEAVD 227
            I VK  G R   G+++GFDP +N+VL+  +E   D D+Q         +G +V RG S+ ++   D
Sbjct:   23 IRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQD 88

[Close]

BLAST of SMED30024032 vs. Ensembl Xenopus
Match: nxph4 (neurexophilin 4 [Source:Xenbase;Acc:XB-GENE-993146])

HSP 1 Score: 43.5134 bits (101), Expect = 4.928e-6
Identity = 27/81 (33.33%), Postives = 50/81 (61.73%), Query Frame = -2

Query:   57 IFRYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEID-KDNQEVNIGTIVIRGNSISILEAV 296
            IFRY+  R +R  +++ Y+  N          R++G + GFD +MN+VL++A EI  K      +G I+++G++I++L++V
Sbjct:   21 IFRYLQNR-SRIQVWL-YEQVNM---------RIEGCIIGFDEYMNLVLDDAEEIHLKTKSRKQLGRIMLKGDNITLLQSV 90

[Close]

BLAST of SMED30024032 vs. Ensembl Mouse
Match: Snrpg (small nuclear ribonucleoprotein polypeptide G [Source:MGI Symbol;Acc:MGI:1915261])

HSP 1 Score: 76.6406 bits (187), Expect = 3.102e-19
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            ++MDK+++               +KLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:   11 KFMDKKLS---------------LKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of SMED30024032 vs. Ensembl Mouse
Match: Lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:MGI Symbol;Acc:MGI:1913344])

HSP 1 Score: 44.669 bits (104), Expect = 1.489e-6
Identity = 24/66 (36.36%), Postives = 36/66 (54.55%), Query Frame = -2

Query:   54 IIVKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EVNIGTIVIRGNSISILEAVD 227
            I VK  G R   GI++GFDP +N+VL+  +E   D D+Q         +G +V RG S+ ++   D
Sbjct:   23 IRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQD 88

[Close]

BLAST of SMED30024032 vs. Ensembl Mouse
Match: Snrpe (small nuclear ribonucleoprotein E [Source:MGI Symbol;Acc:MGI:98346])

HSP 1 Score: 43.8986 bits (102), Expect = 2.299e-6
Identity = 27/82 (32.93%), Postives = 50/82 (60.98%), Query Frame = -2

Query:   54 IFRYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEI-DKDNQEVNIGTIVIRGNSISILEAVD 296
            IFRY+  R +R  +++ Y+  N          R++G + GFD +MN+VL++A EI  K      +G I+++G++I++L++V 
Sbjct:   21 IFRYLQNR-SRIQVWL-YEQVNM---------RIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91

[Close]

BLAST of SMED30024032 vs. UniProt/SwissProt
Match: sp|Q9VXE0|RUXG_DROME (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.713e-21
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            +YMDKRM               ++KLNG R V GI+RGFDPFMN+VL++ VE  KDN + NIG +VIRGNSI ++EA+DRV
Sbjct:   11 KYMDKRM---------------MLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76

[Close]

BLAST of SMED30024032 vs. UniProt/SwissProt
Match: sp|Q9N4G9|RUXG_CAEEL (Probable small nuclear ribonucleoprotein G OS=Caenorhabditis elegans OX=6239 GN=snr-7 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.173e-19
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            +YMDK M                +KLNG+RRV GI+RGFDPFMN+V++ AVE  KD   VN+G  VIRGNS+ I+E  +R+
Sbjct:   11 KYMDKEMD---------------LKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGNSVVIMEPKERI 76

[Close]

BLAST of SMED30024032 vs. UniProt/SwissProt
Match: sp|P62309|RUXG_MOUSE (Small nuclear ribonucleoprotein G OS=Mus musculus OX=10090 GN=Snrpg PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.170e-18
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            ++MDK+++               +KLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:   11 KFMDKKLS---------------LKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of SMED30024032 vs. UniProt/SwissProt
Match: sp|P62308|RUXG_HUMAN (Small nuclear ribonucleoprotein G OS=Homo sapiens OX=9606 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.170e-18
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            ++MDK+++               +KLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:   11 KFMDKKLS---------------LKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of SMED30024032 vs. UniProt/SwissProt
Match: sp|Q3ZBL0|RUXG_BOVIN (Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.170e-18
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            ++MDK+++               +KLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGNSI +LEA++RV
Sbjct:   11 KFMDKKLS---------------LKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of SMED30024032 vs. TrEMBL
Match: A0A132AEA1 (Small nuclear ribonucleoprotein G OS=Sarcoptes scabiei OX=52283 GN=QR98_0074000 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.162e-20
Identity = 41/81 (50.62%), Postives = 60/81 (74.07%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            +YMDKR++               +KLNG+R++ GI+RGFDPFMN+V++ AVEI+K NQ+V IG +V+RGNS+ +LEA+DR+
Sbjct:   11 KYMDKRLS---------------LKLNGNRQISGILRGFDPFMNLVIDEAVEINKRNQQVPIGMVVVRGNSVVLLEALDRI 76

[Close]

BLAST of SMED30024032 vs. TrEMBL
Match: A0A1Y3AYC3 (Small nuclear ribonucleoprotein G OS=Euroglyphus maynei OX=6958 GN=BLA29_002598 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.471e-19
Identity = 40/81 (49.38%), Postives = 60/81 (74.07%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            +YMDKR++               +KLNG+R+V GI+RGFDPFMN+V++ AVEI+K NQ++ IG +VIRGN++ +LE++DR+
Sbjct:   11 KYMDKRLS---------------LKLNGNRQVSGILRGFDPFMNLVIDEAVEINKRNQQIPIGMVVIRGNAVVLLESLDRI 76

[Close]

BLAST of SMED30024032 vs. TrEMBL
Match: A0A195FGJ9 (Small nuclear ribonucleoprotein G OS=Trachymyrmex septentrionalis OX=34720 GN=ALC56_05999 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.219e-18
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = -2

Query:   48 FRYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 293
            FRYMDKR++               +KLNG RRV GI+RGFDPFMN+V++ ++E  KD  + NIG +VIRGNS+ +LEA+DR+
Sbjct:   29 FRYMDKRLS---------------LKLNGGRRVVGILRGFDPFMNMVIDESIEECKDGTKNNIGMVVIRGNSVIMLEALDRI 95

[Close]

BLAST of SMED30024032 vs. TrEMBL
Match: B3MRC4 (Small nuclear ribonucleoprotein G OS=Drosophila ananassae OX=7217 GN=Dana\GF21254 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.554e-18
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            +YMDKRM               ++KLNG R V GI+RGFDPFMN+VL++ VE  KDN + NIG +VIRGNSI ++EA+DRV
Sbjct:   11 KYMDKRM---------------MLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76

[Close]

BLAST of SMED30024032 vs. TrEMBL
Match: B3NVJ9 (Small nuclear ribonucleoprotein G OS=Drosophila erecta OX=7220 GN=Dere\GG18240 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.554e-18
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            +YMDKRM               ++KLNG R V GI+RGFDPFMN+VL++ VE  KDN + NIG +VIRGNSI ++EA+DRV
Sbjct:   11 KYMDKRM---------------MLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76

[Close]

BLAST of SMED30024032 vs. Ensembl Cavefish
Match: snrpg (small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:107196920])

HSP 1 Score: 74.3294 bits (181), Expect = 2.414e-18
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            ++MDK+++               +KLNG R V+GI+RGFDPFMN+V+++ +E+    Q+  IG +VIRGNSI +LEA++RV
Sbjct:   11 KFMDKKLS---------------LKLNGGRHVQGILRGFDPFMNLVVDDCLEMSPGGQQNTIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of SMED30024032 vs. Ensembl Cavefish
Match: snrpg (small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:107196920])

HSP 1 Score: 53.9138 bits (128), Expect = 1.994e-10
Identity = 25/66 (37.88%), Postives = 41/66 (62.12%), Query Frame = -2

Query:   93 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIV 290
            ++MDK+++               +KLNG R V+GI+RGFDPFMN+V+++ +E+    Q+  IG +V
Sbjct:   11 KFMDKKLS---------------LKLNGGRHVQGILRGFDPFMNLVVDDCLEMSPGGQQNTIGMVV 61

[Close]

BLAST of SMED30024032 vs. Ensembl Cavefish
Match: lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:103032086])

HSP 1 Score: 43.5134 bits (101), Expect = 3.139e-6
Identity = 22/66 (33.33%), Postives = 36/66 (54.55%), Query Frame = -2

Query:   54 IIVKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EVNIGTIVIRGNSISILEAVD 227
            I VK  G R   G+++GFDP +N+VL+  +E   D D+Q         +G +V RG ++ ++   D
Sbjct:   23 IRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTAVVLICPQD 88

[Close]

BLAST of SMED30024032 vs. Ensembl Cavefish
Match: ENSAMXT00000047812.1 (small nuclear ribonucleoprotein E [Source:NCBI gene;Acc:103041055])

HSP 1 Score: 42.3578 bits (98), Expect = 7.713e-6
Identity = 26/82 (31.71%), Postives = 50/82 (60.98%), Query Frame = -2

Query:   54 IFRYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEID-KDNQEVNIGTIVIRGNSISILEAVD 296
            IFRY+  R +R  +++ Y+  N          R++G + GFD +MN+VL++A E+  K      +G I+++G++I++L++V 
Sbjct:   21 IFRYLQNR-SRISVWL-YEQVNM---------RIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKTLGRIMLKGDNITLLQSVS 91

[Close]

BLAST of SMED30024032 vs. Ensembl Cavefish
Match: ENSAMXT00000034753.1 (small nuclear ribonucleoprotein E [Source:NCBI gene;Acc:103041055])

HSP 1 Score: 42.3578 bits (98), Expect = 7.713e-6
Identity = 26/82 (31.71%), Postives = 50/82 (60.98%), Query Frame = -2

Query:   54 IFRYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEID-KDNQEVNIGTIVIRGNSISILEAVD 296
            IFRY+  R +R  +++ Y+  N          R++G + GFD +MN+VL++A E+  K      +G I+++G++I++L++V 
Sbjct:   21 IFRYLQNR-SRISVWL-YEQVNM---------RIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKTLGRIMLKGDNITLLQSVS 91

[Close]

BLAST of SMED30024032 vs. Ensembl Sea Lamprey
Match: snrpg (small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105])

HSP 1 Score: 69.707 bits (169), Expect = 2.386e-17
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            ++MDK+++               +KLNG R V GI+RGFDPFMN+V++   E+ +   + ++G +VIRGNSI +LEA++RV
Sbjct:   11 KFMDKKLS---------------LKLNGSRTVTGILRGFDPFMNLVMDECFELCQGGVQNDVGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of SMED30024032 vs. Ensembl Yeast
Match: SMX2 (Core Sm protein Sm G; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Sme1p, and Smx3p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm G [Source:SGD;Acc:S000002965])

HSP 1 Score: 58.151 bits (139), Expect = 6.061e-13
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEID----KDNQEVNIGTIVIRGNSISILEAVDRV 290
            +YMDK+               I++ +NG R+V GI+RG+D F+N+VL++A+EI+     +N ++ + T VIRGNSI  LEA+D +
Sbjct:    9 KYMDKK---------------ILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGEDPANNHQLGLQT-VIRGNSIISLEALDAI 77

[Close]

BLAST of SMED30024032 vs. Ensembl Yeast
Match: LSM5 (Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA [Source:SGD;Acc:S000000948])

HSP 1 Score: 40.4318 bits (93), Expect = 4.710e-6
Identity = 25/68 (36.76%), Postives = 43/68 (63.24%), Query Frame = -2

Query:   66 KTYNY-IIVKLNGHRRVKGIMRGFDPFMNIVLENAVE--IDKDNQEVNI------GTIVIRGNSISIL 242
            KT N  +++ L  +R  +G + GFD F+N++LE+AVE  ID +++  N       G +++ GN+I+IL
Sbjct:   14 KTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAIL 81

[Close]

BLAST of SMED30024032 vs. Ensembl Nematostella
Match: EDO48813 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RII4])

HSP 1 Score: 75.485 bits (184), Expect = 2.954e-19
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = -2

Query:   45 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRVF 290
            +YMDK+++               +KLNG R V G++RG+DPFMN+VL++AVE    N++  IG +VIRGNSI  +EA+DRV 
Sbjct:   11 KYMDKKLS---------------LKLNGGRHVSGVLRGYDPFMNLVLDDAVENVSGNEKHAIGMVVIRGNSIVTMEALDRVL 77

[Close]

BLAST of SMED30024032 vs. Ensembl Nematostella
Match: EDO41002 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S5M5])

HSP 1 Score: 43.1282 bits (100), Expect = 1.692e-6
Identity = 24/84 (28.57%), Postives = 45/84 (53.57%), Query Frame = -2

Query:   54 KRMTRKYIFI*YKTYNY-IIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKD--------NQEVNIGTIVIRGNSISILEAVD 278
            +R  +K IF   K  +  + VK  G R   G+++GFD  +N+VL+N +E  +D        ++   +G +V RG ++ ++  +D
Sbjct:    5 ERKEKKSIFDLSKFLDKGVRVKFQGGREASGVLKGFDALLNLVLDNTIEYLRDPDDPLKLSDETRQLGLVVCRGTAVVLVCPMD 88

[Close]

BLAST of SMED30024032 vs. Ensembl Medaka
Match: snrpg (small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:101154947])

HSP 1 Score: 74.3294 bits (181), Expect = 1.994e-18
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = -2

Query:   48 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRV 290
            ++MDK+++               +KLNG R V+GI+RGFDPFMN+V+++ +E+    Q+  IG +VIRGNSI +LEA++RV
Sbjct:   11 KFMDKKLS---------------LKLNGGRHVQGILRGFDPFMNLVMDDCLEMGPGGQQNTIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of SMED30024032 vs. Ensembl Medaka
Match: snrpg (small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:101154947])

HSP 1 Score: 51.9878 bits (123), Expect = 2.097e-9
Identity = 24/65 (36.92%), Postives = 40/65 (61.54%), Query Frame = -2

Query:   96 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTI 290
            ++MDK+++               +KLNG R V+GI+RGFDPFMN+V+++ +E+    Q+  IG +
Sbjct:   11 KFMDKKLS---------------LKLNGGRHVQGILRGFDPFMNLVMDDCLEMGPGGQQNTIGMV 60

[Close]

BLAST of SMED30024032 vs. Ensembl Medaka
Match: lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:101175386])

HSP 1 Score: 44.669 bits (104), Expect = 1.238e-6
Identity = 23/66 (34.85%), Postives = 36/66 (54.55%), Query Frame = -2

Query:   54 IIVKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EVNIGTIVIRGNSISILEAVD 227
            I VK  G R   G+++GFDP +N+VL+  +E   D D+Q         +G +V RG S+ ++   D
Sbjct:   23 IRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQLKLTEDTRQLGLVVCRGTSVVLICPQD 88

[Close]

BLAST of SMED30024032 vs. Ensembl Medaka
Match: lsm7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:101175386])

HSP 1 Score: 44.669 bits (104), Expect = 1.678e-6
Identity = 23/66 (34.85%), Postives = 36/66 (54.55%), Query Frame = -2

Query:   54 IIVKLNGHRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EVNIGTIVIRGNSISILEAVD 227
            I VK  G R   G+++GFDP +N+VL+  +E   D D+Q         +G +V RG S+ ++   D
Sbjct:   44 IRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQLKLTEDTRQLGLVVCRGTSVVLICPQD 109

[Close]

BLAST of SMED30024032 vs. Planmine SMEST
Match: SMESG000081731.1 (SMESG000081731.1)

HSP 1 Score: 123.25 bits (308), Expect = 7.616e-38
Identity = 65/82 (79.27%), Postives = 67/82 (81.71%), Query Frame = -2

Query:   45 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRVF 290
            +YMDKRMT               +KLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRVF
Sbjct:   11 KYMDKRMT---------------LKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRVF 77

[Close]

BLAST of SMED30024032 vs. Planmine SMEST
Match: SMESG000081727.1 (SMESG000081727.1)

HSP 1 Score: 123.25 bits (308), Expect = 7.616e-38
Identity = 65/82 (79.27%), Postives = 67/82 (81.71%), Query Frame = -2

Query:   45 RYMDKRMTRKYIFI*YKTYNYIIVKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRVF 290
            +YMDKRMT               +KLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRVF
Sbjct:   11 KYMDKRMT---------------LKLNGHRRVKGIMRGFDPFMNIVLENAVEIDKDNQEVNIGTIVIRGNSISILEAVDRVF 77

[Close]

BLAST of SMED30024032 vs. Planmine SMEST
Match: SMESG000036643.1 (SMESG000036643.1)

HSP 1 Score: 46.9802 bits (110), Expect = 9.230e-8
Identity = 21/50 (42.00%), Postives = 38/50 (76.00%), Query Frame = -2

Query:   54 RVKGIMRGFDPFMNIVLENAVEID-KDNQEVNIGTIVIRGNSISILEAVD 200
            R++GI+ GFD +MN+VL++AVE   K   E  IG I+++G++I+++++ D
Sbjct:   42 RIEGIILGFDEYMNVVLDDAVERHMKSGSEKKIGRIMLKGDAITLIQSCD 91

The following BLAST results are available for this feature:

BLAST of SMED30024032 vs. Ensembl Human
BLAST of SMED30024032 vs. Ensembl Celegans
BLAST of SMED30024032 vs. Ensembl Fly
BLAST of SMED30024032 vs. Ensembl Zebrafish
BLAST of SMED30024032 vs. Ensembl Xenopus
BLAST of SMED30024032 vs. Ensembl Mouse
BLAST of SMED30024032 vs. UniProt/SwissProt
BLAST of SMED30024032 vs. TrEMBL
BLAST of SMED30024032 vs. Ensembl Cavefish
BLAST of SMED30024032 vs. Ensembl Sea Lamprey
BLAST of SMED30024032 vs. Ensembl Yeast
BLAST of SMED30024032 vs. Ensembl Nematostella
BLAST of SMED30024032 vs. Ensembl Medaka
BLAST of SMED30024032 vs. Planmine SMEST

BLAST of SMED30024032 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
SNRPG	4.518e-19	46.91	small nuclear ribonucleoprotein polypeptide G [Sou...	[more]
SNRPG	5.987e-19	47.50	small nuclear ribonucleoprotein polypeptide G [Sou...	[more]
SNRPG	8.537e-19	60.34	small nuclear ribonucleoprotein polypeptide G [Sou...	[more]
SNRPG	8.537e-19	60.34	small nuclear ribonucleoprotein polypeptide G [Sou...	[more]
SNRPG	8.537e-19	60.34	small nuclear ribonucleoprotein polypeptide G [Sou...	[more]

BLAST of SMED30024032 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1


Match Name	E-value	Identity	Description
snr-7	4.853e-20	49.38	Probable small nuclear ribonucleoprotein G [Sourc...	[more]

BLAST of SMED30024032 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
SNRPG	8.692e-22	54.32	gene:FBgn0261791 transcript:FBtr0112993	[more]
SNRPG	8.692e-22	54.32	gene:FBgn0261791 transcript:FBtr0074377	[more]
LSm7	6.193e-6	33.33	gene:FBgn0261068 transcript:FBtr0343770	[more]
LSm7	6.193e-6	33.33	gene:FBgn0261068 transcript:FBtr0080934	[more]
LSm7	6.193e-6	33.33	gene:FBgn0261068 transcript:FBtr0308804	[more]

BLAST of SMED30024032 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
snrpg	1.844e-17	44.44	small nuclear ribonucleoprotein polypeptide G [Sou...	[more]
lsm7	7.497e-7	33.82	LSM7 homolog, U6 small nuclear RNA and mRNA degrad...	[more]

BLAST of SMED30024032 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4


Match Name	E-value	Identity	Description
snrpg	2.209e-17	44.44	small nuclear ribonucleoprotein polypeptide G [Sou...	[more]
lsm7	2.030e-6	31.40	LSM7 homolog, U6 small nuclear RNA and mRNA degrad...	[more]
lsm7	2.185e-6	34.85	LSM7 homolog, U6 small nuclear RNA and mRNA degrad...	[more]
nxph4	4.928e-6	33.33	neurexophilin 4 [Source:Xenbase;Acc:XB-GENE-993146...	[more]

BLAST of SMED30024032 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3


Match Name	E-value	Identity	Description
Snrpg	3.102e-19	46.91	small nuclear ribonucleoprotein polypeptide G [Sou...	[more]
Lsm7	1.489e-6	36.36	LSM7 homolog, U6 small nuclear RNA and mRNA degrad...	[more]
Snrpe	2.299e-6	32.93	small nuclear ribonucleoprotein E [Source:MGI Symb...	[more]

BLAST of SMED30024032 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q9VXE0\|RUXG_DROME	8.713e-21	54.32	Probable small nuclear ribonucleoprotein G OS=Dros...	[more]
sp\|Q9N4G9\|RUXG_CAEEL	6.173e-19	49.38	Probable small nuclear ribonucleoprotein G OS=Caen...	[more]
sp\|P62309\|RUXG_MOUSE	2.170e-18	46.91	Small nuclear ribonucleoprotein G OS=Mus musculus ...	[more]
sp\|P62308\|RUXG_HUMAN	2.170e-18	46.91	Small nuclear ribonucleoprotein G OS=Homo sapiens ...	[more]
sp\|Q3ZBL0\|RUXG_BOVIN	2.170e-18	46.91	Small nuclear ribonucleoprotein G OS=Bos taurus OX...	[more]

BLAST of SMED30024032 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A132AEA1	3.162e-20	50.62	Small nuclear ribonucleoprotein G OS=Sarcoptes sca...	[more]
A0A1Y3AYC3	1.471e-19	49.38	Small nuclear ribonucleoprotein G OS=Euroglyphus m...	[more]
A0A195FGJ9	2.219e-18	51.22	Small nuclear ribonucleoprotein G OS=Trachymyrmex ...	[more]
B3MRC4	2.554e-18	54.32	Small nuclear ribonucleoprotein G OS=Drosophila an...	[more]
B3NVJ9	2.554e-18	54.32	Small nuclear ribonucleoprotein G OS=Drosophila er...	[more]

BLAST of SMED30024032 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
snrpg	2.414e-18	44.44	small nuclear ribonucleoprotein polypeptide G [Sou...	[more]
snrpg	1.994e-10	37.88	small nuclear ribonucleoprotein polypeptide G [Sou...	[more]
lsm7	3.139e-6	33.33	LSM7 homolog, U6 small nuclear RNA and mRNA degrad...	[more]
ENSAMXT00000047812.1	7.713e-6	31.71	small nuclear ribonucleoprotein E [Source:NCBI gen...	[more]
ENSAMXT00000034753.1	7.713e-6	31.71	small nuclear ribonucleoprotein E [Source:NCBI gen...	[more]

BLAST of SMED30024032 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
snrpg	2.386e-17	41.98	small nuclear ribonucleoprotein polypeptide G [Sou...	[more]

BLAST of SMED30024032 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
SMX2	6.061e-13	40.00	Core Sm protein Sm G; part of heteroheptameric com...	[more]
LSM5	4.710e-6	36.76	Lsm (Like Sm) protein; part of heteroheptameric co...	[more]

BLAST of SMED30024032 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO48813	2.954e-19	46.34	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO41002	1.692e-6	28.57	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30024032 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
snrpg	1.994e-18	44.44	small nuclear ribonucleoprotein polypeptide G [Sou...	[more]
snrpg	2.097e-9	36.92	small nuclear ribonucleoprotein polypeptide G [Sou...	[more]
lsm7	1.238e-6	34.85	LSM7 homolog, U6 small nuclear RNA and mRNA degrad...	[more]
lsm7	1.678e-6	34.85	LSM7 homolog, U6 small nuclear RNA and mRNA degrad...	[more]

BLAST of SMED30024032 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3


Match Name	E-value	Identity	Description
SMESG000081731.1	7.616e-38	79.27	SMESG000081731.1	[more]
SMESG000081727.1	7.616e-38	79.27	SMESG000081727.1	[more]
SMESG000036643.1	9.230e-8	42.00	SMESG000036643.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence

transcript sequence

>SMED30024032 ID=SMED30024032|Name=SMED30024032|organism=Schmidtea mediterranea sexual|type=transcript|length=393bp
TAATACAAATGAATAACTTTATTATTTGTAATATTTACACATTAGAAAAC
ACGATCAACAGCTTCAAGAATACTAATGCTGTTCCCTCTAATTACAATAG
TGCCGATATTTACTTCCTGATTATCTTTGTCAATCTCAACAGCATTTTCC
AAAACTATATTCATAAATGGATCGAATCCTCGCATAATACCTTTAACACG
ACGGTGGCCATTTAGTTTTACTATAATATAGTTATAAGTTTTATATCAAA
TAAAAATATACTTACGAGTCATTCTCTTATCCATGTATCTAAAAATATTT
ATTAATAATGAAGATTGAAACTATAGCTTACTTTTTCAGTTCAGGAGGAT
GGGCTCGATTCATTTTTAAGATTTGAAATAGTTAAAATTAAAA

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000429	neoblast
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 1..42 e-value: 0.0076 score: 22.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 2..40 e-value: 2.9E-13 score: 49.3
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 1..47 e-value: 1.2E-14 score: 55.6
None	No IPR available	PANTHER	PTHR10553:SF2	SMALL NUCLEAR RIBONUCLEOPROTEIN G	coord: 1..46
None	No IPR available	PANTHER	PTHR10553	SMALL NUCLEAR RIBONUCLEOPROTEIN	coord: 1..46
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 2..45