SMED30024029

Overview


Name	SMED30024029
Smed ID	SMED30024029
Length (bp)	490

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30024029

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 24

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
head region	SMED30024029	h1SMcG0013360	SmedASXL_080944	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
head region	SMED30024029	h1SMcG0013360	SmedASXL_013101	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
head region	SMED30024029	h1SMcG0013360	SmedASXL_005273	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
head region	SMED30024029	h1SMcG0013360	SmedASXL_004889	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
head region	SMED30024029	h1SMcG0013360	SmedASXL_000149	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
head region	SMED30024029	h1SMcG0013360	SmedASXL_008576	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
nervous system	SMED30024029	h1SMcG0013360	dd_Smed_v4_20782_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30024029	h1SMcG0013360	dd_Smed_v4_20782_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30024029	h1SMcG0013360	dd_Smed_v4_20782_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30024029	h1SMcG0013360	dd_Smed_v4_20782_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30024029	h1SMcG0013360	dd_Smed_v4_26550_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30024029	h1SMcG0013360	dd_Smed_v4_21124_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30024029	h1SMcG0013360	dd_Smed_v4_21124_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30024029	h1SMcG0013360	dd_Smed_v4_21124_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30024029	h1SMcG0013360	dd_Smed_v4_32573_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30024029	h1SMcG0013360	dd_Smed_v4_32573_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30024029	h1SMcG0013360	dd_Smed_v4_32573_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30024029	h1SMcG0013360	dd_Smed_v4_32573_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
head region	SMED30024029	h1SMcG0013360	dd_Smed_v6_32573_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
head region	SMED30024029	h1SMcG0013360	dd_Smed_v6_41749_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
head region	SMED30024029	h1SMcG0013360	dd_Smed_v6_20782_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
head region	SMED30024029	h1SMcG0013360	dd_Smed_v6_21124_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
neuron	SMED30024029	h1SMcG0013360	dd_Smed_v6_32573_0_1	dd_Smed_v6	PMID:30399335 Ross et al., 2018
head region	SMED30024029	h1SMcG0013360	OX_Smed_1.0.08391	ox_Smed_v2	PMID:24238224 Kao et al., 2013

Note: Hover over icons to view figure legend

Alignments

SMED30024029 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.000411:15639..16128 -	2450

Homology

[Close]

BLAST of SMED30024029 vs. Ensembl Human
Match: ABCA1 (ATP binding cassette subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:29])

HSP 1 Score: 107.071 bits (266), Expect = 8.031e-27
Identity = 48/128 (37.50%), Postives = 80/128 (62.50%), Query Frame = -1

Query:  107 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYW 490
              F +A++A+  GGI+YF  YLP+++ V  QD +   +   A+LL+ V+      + A +E+   G+Q+ NLF+S + +  F +   + MM  D+ +Y ++ WYIE VFPGQ+G+ +PW FP T++YW
Sbjct:  738 TLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFTLKIFASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTSVSMMLFDTFLYGVMTWYIEAVFPGQYGIPRPWYFPCTKSYW 865

[Close]

BLAST of SMED30024029 vs. Ensembl Human
Match: ABCA3 (ATP binding cassette subfamily A member 3 [Source:HGNC Symbol;Acc:HGNC:33])

HSP 1 Score: 104.76 bits (260), Expect = 4.335e-26
Identity = 50/133 (37.59%), Postives = 76/133 (57.14%), Query Frame = -1

Query:   89 FFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGK 487
            FF KA++A+  GG LYF  Y+P+       + MT+     + LL+ V+++     I  +E    GIQ+ +L     +D +F  G  + M+ +DSV+Y L+ WY+E VFPGQFG+ +PW F    +YW   CGK
Sbjct:  367 FFSKANMAAAFGGFLYFFTYIPYFFVAPRYNWMTLSQKLCSCLLSNVAMAMGAQLIGKFEAKGMGIQWRDLLSPVNVDDDFCFGQVLGMLLLDSVLYGLVTWYMEAVFPGQFGVPQPWYFFIMPSYW---CGK 496

[Close]

BLAST of SMED30024029 vs. Ensembl Human
Match: ABCA7 (ATP binding cassette subfamily A member 7 [Source:HGNC Symbol;Acc:HGNC:37])

HSP 1 Score: 102.449 bits (254), Expect = 2.920e-25
Identity = 47/132 (35.61%), Postives = 77/132 (58.33%), Query Frame = -1

Query:   92 FFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICG 487
            FF +A++A+  GG+ YF  YLP+++ V  +D +      AA+LL+ V+       +A  E+  +G Q+ N+      D+ F +     ++ +D+ +Y L  WY+E V PGQ+G+ +PWNFPF R+YW   CG
Sbjct:  649 FFSRANLAAACGGLAYFSLYLPYVLCVAWRDRLPAGGRVAASLLSPVAFGFGCESLALLEEQGEGAQWHNVGTRPTADV-FSLAQVSGLLLLDAALYGLATWYLEAVCPGQYGIPEPWNFPFRRSYW---CG 776

[Close]

BLAST of SMED30024029 vs. Ensembl Human
Match: ABCA4 (ATP binding cassette subfamily A member 4 [Source:HGNC Symbol;Acc:HGNC:34])

HSP 1 Score: 102.064 bits (253), Expect = 4.227e-25
Identity = 54/168 (32.14%), Postives = 88/168 (52.38%), Query Frame = -1

Query:    2 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSN-----LDEMESFSNPLNEPIPNESLNERGFEH 490
             FF KAS+A+   G++YF  YLP ++    QD MT  +  A +LL+ V+      ++  +E+   G+Q+SN+ +S      F     M MM +D+ +Y L+AWY++ VFPG +G   PW F    +YW+   G S      L++ E  +    +P   E +++  FE 
Sbjct:  753 TFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTAELKKAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPTEGDEFSFLLSMQMMLLDAAVYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREERALEKTEPLTEETEDPEHPEGIHDSFFER 920

[Close]

BLAST of SMED30024029 vs. Ensembl Human
Match: ABCA12 (ATP binding cassette subfamily A member 12 [Source:HGNC Symbol;Acc:HGNC:14637])

HSP 1 Score: 95.1301 bits (235), Expect = 1.223e-22
Identity = 41/128 (32.03%), Postives = 77/128 (60.16%), Query Frame = -1

Query:  107 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYW 490
            VFF+  ++A++ G ++Y + + PF++ V +++ ++  +    +LL+  + S +  +IA +E+   G+Q+ N++ S + D     G    ++  DS IY LIAWY+  VFPG +G++ PW FP   +YW
Sbjct: 1167 VFFNNTNIAALIGSLIYIIAFFPFIVLVTVENELSYVLKVFMSLLSPTAFSYASQYIARYEEQGIGLQWENMYTSPVQDDTTSFGWLCCLILADSFIYFLIAWYVRNVFPGTYGMAAPWYFPILPSYW 1294

[Close]

BLAST of SMED30024029 vs. Ensembl Celegans
Match: abt-2 (ABC Transporter family [Source:UniProtKB/TrEMBL;Acc:Q1RS86])

HSP 1 Score: 71.2478 bits (173), Expect = 7.249e-15
Identity = 38/129 (29.46%), Postives = 72/129 (55.81%), Query Frame = -1

Query:  107 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAAL-LTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYW 490
              F  A++A+ +  +L+FVF++PF +     D ++ P +   +L L   ++ +    +  +  + +   +S+L++     L   V  CM+M+ +D+ ++L++AWYI  V PG FG+ +P  FPFT  YW
Sbjct:  730 TLFTNANIATAATCVLWFVFFIPFQLLRT--DRISSPTFNRISLILPPTAMGHCFKLLESF-NAMERATWSDLWEMNNPVLGISVELCMIMLVVDTAVFLILAWYISAVAPGDFGVRQPLWFPFTLKYW 855

[Close]

BLAST of SMED30024029 vs. Ensembl Celegans
Match: abt-2 (ABC Transporter family [Source:UniProtKB/TrEMBL;Acc:Q1RS86])

HSP 1 Score: 71.2478 bits (173), Expect = 7.612e-15
Identity = 38/129 (29.46%), Postives = 72/129 (55.81%), Query Frame = -1

Query:  107 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAAL-LTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYW 490
              F  A++A+ +  +L+FVF++PF +     D ++ P +   +L L   ++ +    +  +  + +   +S+L++     L   V  CM+M+ +D+ ++L++AWYI  V PG FG+ +P  FPFT  YW
Sbjct:  767 TLFTNANIATAATCVLWFVFFIPFQLLRT--DRISSPTFNRISLILPPTAMGHCFKLLESF-NAMERATWSDLWEMNNPVLGISVELCMIMLVVDTAVFLILAWYISAVAPGDFGVRQPLWFPFTLKYW 892

[Close]

BLAST of SMED30024029 vs. Ensembl Celegans
Match: abt-4 (ABC Transporter family [Source:UniProtKB/TrEMBL;Acc:Q9TXV8])

HSP 1 Score: 65.855 bits (159), Expect = 6.400e-13
Identity = 37/147 (25.17%), Postives = 71/147 (48.30%), Query Frame = -1

Query:   56 FFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAA--ALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGL-SKPWNFPFTRNYWISICGKSNLDEMESFSN 487
            F + A+ A++   + + + Y  +  F ++  +   P+ Y     +   ++L+  +  +A +E   DG+++  LF     D N   GH ++ + +D +I +++ WYIE V PG  G+  KPW F    +YW    G   +D  + F  
Sbjct:  419 FMNSATSATLISVVFWMLLYFWYAFFSSIDQTNPYPLGYRLINCINPDIALNYGLQLLAAYETQADGLKWGELFTPPSPDNNLTFGHALIALIVDGIIMIILTWYIEAVIPGGEGVPQKPWFFVLP-SYWFPNSGSKTVDSSDQFQQ 564

[Close]

BLAST of SMED30024029 vs. Ensembl Fly
Match: ABCA (gene:FBgn0031170 transcript:FBtr0306679)

HSP 1 Score: 107.457 bits (267), Expect = 2.501e-27
Identity = 52/159 (32.70%), Postives = 88/159 (55.35%), Query Frame = -1

Query:   14 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNPLNEPIPNESLNER 490
             FF +AS A+   G+++F+ Y+P+   +N  D +++      +L++  ++   I  I  +E + +G+Q+SN F    +D    +G  M+MM +  VIY++I  Y+E V PG FG+ +PWNFPFTR +W   CG+     +E         IPN  + +R
Sbjct:  375 TFFSRASTAAAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGIKLILGFEGTGEGLQWSNFFTPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPWNFPFTREFW---CGEREYTGVED--------IPNGHVEQR 522

[Close]

BLAST of SMED30024029 vs. Ensembl Fly
Match: ABCA (gene:FBgn0031170 transcript:FBtr0332489)

HSP 1 Score: 107.457 bits (267), Expect = 2.548e-27
Identity = 52/159 (32.70%), Postives = 88/159 (55.35%), Query Frame = -1

Query:   14 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNPLNEPIPNESLNER 490
             FF +AS A+   G+++F+ Y+P+   +N  D +++      +L++  ++   I  I  +E + +G+Q+SN F    +D    +G  M+MM +  VIY++I  Y+E V PG FG+ +PWNFPFTR +W   CG+     +E         IPN  + +R
Sbjct:  353 TFFSRASTAAAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGIKLILGFEGTGEGLQWSNFFTPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPWNFPFTREFW---CGEREYTGVED--------IPNGHVEQR 500

[Close]

BLAST of SMED30024029 vs. Ensembl Fly
Match: ABCA (gene:FBgn0031170 transcript:FBtr0332488)

HSP 1 Score: 107.457 bits (267), Expect = 2.624e-27
Identity = 52/159 (32.70%), Postives = 88/159 (55.35%), Query Frame = -1

Query:   14 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNPLNEPIPNESLNER 490
             FF +AS A+   G+++F+ Y+P+   +N  D +++      +L++  ++   I  I  +E + +G+Q+SN F    +D    +G  M+MM +  VIY++I  Y+E V PG FG+ +PWNFPFTR +W   CG+     +E         IPN  + +R
Sbjct:  353 TFFSRASTAAAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGIKLILGFEGTGEGLQWSNFFTPVSVDDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPWNFPFTREFW---CGEREYTGVED--------IPNGHVEQR 500

[Close]

BLAST of SMED30024029 vs. Ensembl Fly
Match: CG6052 (gene:FBgn0036747 transcript:FBtr0075195)

HSP 1 Score: 72.0182 bits (175), Expect = 6.126e-15
Identity = 41/133 (30.83%), Postives = 71/133 (53.38%), Query Frame = -1

Query:  107 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNS-----INFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYW 490
            V F KAS AS    I +F+ Y+P+       + +++     + LL  +  SNS     I+ I  WE + +GI + N+F     D +  + + ++ M   S++++ I  Y+E VFPG++G+ + WNF   +NYW
Sbjct:  353 VLFSKASTASAVAAIFWFLTYIPYSFGYYYYERLSL----MSKLLISLIFSNSALGFGIHVIVMWEGTGEGITWRNMFHPVSTDDSLTLFYIIMTMSFGSIMFISICLYVEQVFPGEYGVPRRWNFMCHKNYW 481

[Close]

BLAST of SMED30024029 vs. Ensembl Fly
Match: CG31213 (gene:FBgn0051213 transcript:FBtr0335242)

HSP 1 Score: 56.6102 bits (135), Expect = 1.128e-9
Identity = 41/119 (34.45%), Postives = 67/119 (56.30%), Query Frame = -1

Query:  107 VSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFG-VGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYW 460
            V+  ++YF   LPFLI V  ++S +V    AA++    +L   ++ +A  E  + G Q+  + ++A        VG+ ++M+ I S I LLI  YIE V  G+F + +PW++PF R YW
Sbjct:  317 VATILMYFSTALPFLI-VGAENS-SVAAQTAASIGLNSALFYILDSVAVMEMQSVGAQWYTIDNTASSGYKLSIVGYMLIMISI-SWIELLICLYIEAVRTGEFEVPQPWSYPFQRRYW 432

[Close]

BLAST of SMED30024029 vs. Ensembl Zebrafish
Match: abca1b (ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826])

HSP 1 Score: 109.768 bits (273), Expect = 5.975e-28
Identity = 47/116 (40.52%), Postives = 78/116 (67.24%), Query Frame = -1

Query:  107 GGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYW 454
            GGI+YF  YLP+++ V  QD +       A+LL+ V+      + A +E+   GIQ++NLF S + + ++ +  C+++M+ D+ +Y ++ WYIETVFPGQ+G+ +PW FPFT++YW
Sbjct:  753 GGIIYFTLYLPYVLCVAWQDYVGFAAKVIASLLSPVAFGFGCEYFALFEEQGVGIQWNNLFSSPVEEDDYNLTTCLILMYFDAFLYGVMTWYIETVFPGQYGIPRPWYFPFTKSYW 868

[Close]

BLAST of SMED30024029 vs. Ensembl Zebrafish
Match: abca1b (ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826])

HSP 1 Score: 109.768 bits (273), Expect = 6.091e-28
Identity = 47/116 (40.52%), Postives = 78/116 (67.24%), Query Frame = -1

Query:  107 GGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYW 454
            GGI+YF  YLP+++ V  QD +       A+LL+ V+      + A +E+   GIQ++NLF S + + ++ +  C+++M+ D+ +Y ++ WYIETVFPGQ+G+ +PW FPFT++YW
Sbjct:  753 GGIIYFTLYLPYVLCVAWQDYVGFAAKVIASLLSPVAFGFGCEYFALFEEQGVGIQWNNLFSSPVEEDDYNLTTCLILMYFDAFLYGVMTWYIETVFPGQYGIPRPWYFPFTKSYW 868

[Close]

BLAST of SMED30024029 vs. Ensembl Zebrafish
Match: abca1a (ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12])

HSP 1 Score: 108.997 bits (271), Expect = 1.088e-27
Identity = 50/135 (37.04%), Postives = 83/135 (61.48%), Query Frame = -1

Query:   86 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKS 490
              F +A++A+  GGI+YF  YLP+++ V  Q+ +        +LL+ V+      + A +E+   GIQ+SNL  S + + ++ +   + +M  DSV+Y ++ WYIE VFPGQ+G+ +PW FPFT++YW   CG+ 
Sbjct:  742 TLFSRANLAAACGGIIYFTLYLPYVLCVAWQNYVGFGAKIVVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPMQEDSYNLTTSICLMLFDSVLYAVMTWYIEAVFPGQYGIPRPWYFPFTKSYW---CGEK 873

[Close]

Query:   86 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKS 490
              F +A++A+  GGI+YF  YLP+++ V  Q+ +        +LL+ V+      + A +E+   GIQ+SNL  S + + ++ +   + +M  DSV+Y ++ WYIE VFPGQ+G+ +PW FPFT++YW   CG+ 
Sbjct:  742 TLFSRANLAAACGGIIYFTLYLPYVLCVAWQNYVGFGAKIVVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPMQEDSYNLTTSICLMLFDSVLYAVMTWYIEAVFPGQYGIPRPWYFPFTKSYW---CGEK 873

[Close]

BLAST of SMED30024029 vs. Ensembl Zebrafish
Match: abca12 (ATP-binding cassette, sub-family A (ABC1), member 12 [Source:ZFIN;Acc:ZDB-GENE-030131-9790])

HSP 1 Score: 101.679 bits (252), Expect = 3.836e-25
Identity = 46/137 (33.58%), Postives = 86/137 (62.77%), Query Frame = -1

Query:   86 FFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWI---SICGKS 487
            FFDK ++A +SG ++Y + + PF++ ++L+D+++  +  A +L +    S +  +IA +E+  +GIQ+SN++ S +       G    ++ IDS++Y +I  YI  VFPG++G++ PW FP T+++W    S C K+
Sbjct:  382 FFDKTNIAGLSGSLIYVISFFPFIVLIHLEDNLSFSVKSALSLFSPTCFSYASQYIARYEKQEEGIQWSNMYISPLAGDTSSFGWLCWLLLIDSLVYFIIGIYIRMVFPGKYGIAVPWYFPVTKSFWTDMFSCCSKT 518

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BLAST of SMED30024029 vs. Ensembl Xenopus
Match: ABCA1 (ATP binding cassette subfamily A member 1 [Source:NCBI gene;Acc:100491942])

HSP 1 Score: 105.531 bits (262), Expect = 2.577e-26
Identity = 50/146 (34.25%), Postives = 85/146 (58.22%), Query Frame = -1

Query:   53 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNP 490
              F +A++A+  GGI+YF  YLP+++ V  QD +   +   A+ L+ V+        A  E+   G+Q+ NL +S + +  + +     MM  D+++Y ++ WYIE VFPGQ+G+ +PW FPFT++YW   CG    +E + ++ P
Sbjct:  691 TIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGYTLKIFASFLSPVAFGFGCEVFALLEEQGVGVQWDNLLESPLEENGYNITTSGFMMLFDTLLYGIMTWYIEAVFPGQYGIPRPWYFPFTKSYW---CG----EECKEYNQP 829

[Close]

BLAST of SMED30024029 vs. Ensembl Xenopus
Match: ABCA1 (ATP binding cassette subfamily A member 1 [Source:NCBI gene;Acc:100491942])

HSP 1 Score: 105.531 bits (262), Expect = 2.679e-26
Identity = 50/146 (34.25%), Postives = 85/146 (58.22%), Query Frame = -1

Query:   53 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNP 490
              F +A++A+  GGI+YF  YLP+++ V  QD +   +   A+ L+ V+        A  E+   G+Q+ NL +S + +  + +     MM  D+++Y ++ WYIE VFPGQ+G+ +PW FPFT++YW   CG    +E + ++ P
Sbjct:  708 TIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGYTLKIFASFLSPVAFGFGCEVFALLEEQGVGVQWDNLLESPLEENGYNITTSGFMMLFDTLLYGIMTWYIEAVFPGQYGIPRPWYFPFTKSYW---CG----EECKEYNQP 846

[Close]

BLAST of SMED30024029 vs. Ensembl Xenopus
Match: ABCA1 (ATP binding cassette subfamily A member 1 [Source:NCBI gene;Acc:100491942])

HSP 1 Score: 105.145 bits (261), Expect = 2.710e-26
Identity = 50/146 (34.25%), Postives = 85/146 (58.22%), Query Frame = -1

Query:   53 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNP 490
              F +A++A+  GGI+YF  YLP+++ V  QD +   +   A+ L+ V+        A  E+   G+Q+ NL +S + +  + +     MM  D+++Y ++ WYIE VFPGQ+G+ +PW FPFT++YW   CG    +E + ++ P
Sbjct:  740 TIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGYTLKIFASFLSPVAFGFGCEVFALLEEQGVGVQWDNLLESPLEENGYNITTSGFMMLFDTLLYGIMTWYIEAVFPGQYGIPRPWYFPFTKSYW---CG----EECKEYNQP 878

[Close]

BLAST of SMED30024029 vs. Ensembl Xenopus
Match: ABCA1 (ATP binding cassette subfamily A member 1 [Source:NCBI gene;Acc:100491942])

HSP 1 Score: 105.145 bits (261), Expect = 2.711e-26
Identity = 50/146 (34.25%), Postives = 85/146 (58.22%), Query Frame = -1

Query:   53 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNP 490
              F +A++A+  GGI+YF  YLP+++ V  QD +   +   A+ L+ V+        A  E+   G+Q+ NL +S + +  + +     MM  D+++Y ++ WYIE VFPGQ+G+ +PW FPFT++YW   CG    +E + ++ P
Sbjct:  742 TIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGYTLKIFASFLSPVAFGFGCEVFALLEEQGVGVQWDNLLESPLEENGYNITTSGFMMLFDTLLYGIMTWYIEAVFPGQYGIPRPWYFPFTKSYW---CG----EECKEYNQP 880

[Close]

BLAST of SMED30024029 vs. Ensembl Xenopus
Match: ABCA1 (ATP binding cassette subfamily A member 1 [Source:NCBI gene;Acc:100491942])

HSP 1 Score: 105.145 bits (261), Expect = 2.763e-26
Identity = 50/146 (34.25%), Postives = 85/146 (58.22%), Query Frame = -1

Query:   53 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNP 490
              F +A++A+  GGI+YF  YLP+++ V  QD +   +   A+ L+ V+        A  E+   G+Q+ NL +S + +  + +     MM  D+++Y ++ WYIE VFPGQ+G+ +PW FPFT++YW   CG    +E + ++ P
Sbjct:  738 TIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGYTLKIFASFLSPVAFGFGCEVFALLEEQGVGVQWDNLLESPLEENGYNITTSGFMMLFDTLLYGIMTWYIEAVFPGQYGIPRPWYFPFTKSYW---CG----EECKEYNQP 876

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BLAST of SMED30024029 vs. Ensembl Mouse
Match: Abca1 (ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607])

HSP 1 Score: 107.071 bits (266), Expect = 4.723e-27
Identity = 51/146 (34.93%), Postives = 87/146 (59.59%), Query Frame = -1

Query:   53 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNP 490
              F +A++A+  GGI+YF  YLP+++ V  QD +   +   A+LL+ V+      + A +E+   G+Q+ NLF+S + +  F +   + MM  D+ +Y ++ WYIE VFPGQ+G+ +PW FP T++YW         +E++  S+P
Sbjct:  738 TLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFSIKIFASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTAVSMMLFDTFLYGVMTWYIEAVFPGQYGIPRPWYFPCTKSYWFG-------EEIDEKSHP 876

[Close]

BLAST of SMED30024029 vs. Ensembl Mouse
Match: Abca3 (ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617])

HSP 1 Score: 105.531 bits (262), Expect = 1.634e-26
Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = -1

Query:   53 FFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICG--KSNLDEMESFSNP 487
            FF KA++A+  GG LYF  Y P+       + MT+     + LL+ V+++     I  +E    GIQ+ +L +   +D NF  G  + M+ +DS +Y L+ WY+E VFPGQFG+ +PW+F    +YW   CG  ++ + + E  S+P
Sbjct:  367 FFSKANIAAAVGGFLYFFTYTPYFFVAPRYNWMTLSQKLLSCLLSNVAMAMGAQLIGKFEAKGTGIQWRDLLNPVNVDDNFCFGQVLGMLLLDSALYGLVTWYVEAVFPGQFGVPQPWHFFLMPSYW---CGNPRTVVGKEEEGSDP 510

[Close]

Query:   53 FFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICG--KSNLDEMESFSNP 487
            FF KA++A+  GG LYF  Y P+       + MT+     + LL+ V+++     I  +E    GIQ+ +L +   +D NF  G  + M+ +DS +Y L+ WY+E VFPGQFG+ +PW+F    +YW   CG  ++ + + E  S+P
Sbjct:  367 FFSKANIAAAVGGFLYFFTYTPYFFVAPRYNWMTLSQKLLSCLLSNVAMAMGAQLIGKFEAKGTGIQWRDLLNPVNVDDNFCFGQVLGMLLLDSALYGLVTWYVEAVFPGQFGVPQPWHFFLMPSYW---CGNPRTVVGKEEEGSDP 510

[Close]

BLAST of SMED30024029 vs. Ensembl Mouse
Match: Abca3 (ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617])

HSP 1 Score: 105.145 bits (261), Expect = 2.224e-26
Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = -1

Query:   53 FFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICG--KSNLDEMESFSNP 487
            FF KA++A+  GG LYF  Y P+       + MT+     + LL+ V+++     I  +E    GIQ+ +L +   +D NF  G  + M+ +DS +Y L+ WY+E VFPGQFG+ +PW+F    +YW   CG  ++ + + E  S+P
Sbjct:  367 FFSKANIAAAVGGFLYFFTYTPYFFVAPRYNWMTLSQKLLSCLLSNVAMAMGAQLIGKFEAKGTGIQWRDLLNPVNVDDNFCFGQVLGMLLLDSALYGLVTWYVEAVFPGQFGVPQPWHFFLMPSYW---CGNPRTVVGKEEEGSDP 510

[Close]

BLAST of SMED30024029 vs. Ensembl Mouse
Match: Abca4 (ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424])

HSP 1 Score: 101.679 bits (252), Expect = 4.193e-25
Identity = 53/168 (31.55%), Postives = 87/168 (51.79%), Query Frame = -1

Query:    2 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSN-----LDEMESFSNPLNEPIPNESLNERGFEH 490
              F KAS+A+   G++YF  YLP ++    QD MT  +    +LL+ V+      ++  +E+   G+Q+SN+  S +    F     M MM +D+ +Y L+AWY++ VFPG +G   PW F    +YW+   G S      L++ E  +  + +P   E +N+  FE 
Sbjct:  753 TLFSKASLAAACSGVIYFTLYLPHVLCFAWQDRMTADLKTTVSLLSSVAFGFGTEYLVRFEEQGLGLQWSNIGKSPLEGDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREERALEKTEPLTEEMEDPEHPEGMNDSFFER 920

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BLAST of SMED30024029 vs. UniProt/SwissProt
Match: sp|P41233|ABCA1_MOUSE (Phospholipid-transporting ATPase ABCA1 OS=Mus musculus OX=10090 GN=Abca1 PE=1 SV=4)

HSP 1 Score: 107.071 bits (266), Expect = 3.304e-26
Identity = 51/146 (34.93%), Postives = 87/146 (59.59%), Query Frame = -1

Query:   53 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNP 490
              F +A++A+  GGI+YF  YLP+++ V  QD +   +   A+LL+ V+      + A +E+   G+Q+ NLF+S + +  F +   + MM  D+ +Y ++ WYIE VFPGQ+G+ +PW FP T++YW         +E++  S+P
Sbjct:  738 TLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFSIKIFASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTAVSMMLFDTFLYGVMTWYIEAVFPGQYGIPRPWYFPCTKSYWFG-------EEIDEKSHP 876

[Close]

BLAST of SMED30024029 vs. UniProt/SwissProt
Match: sp|O95477|ABCA1_HUMAN (Phospholipid-transporting ATPase ABCA1 OS=Homo sapiens OX=9606 GN=ABCA1 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 3.857e-26
Identity = 48/128 (37.50%), Postives = 80/128 (62.50%), Query Frame = -1

Query:  107 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYW 490
              F +A++A+  GGI+YF  YLP+++ V  QD +   +   A+LL+ V+      + A +E+   G+Q+ NLF+S + +  F +   + MM  D+ +Y ++ WYIE VFPGQ+G+ +PW FP T++YW
Sbjct:  738 TLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFTLKIFASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTSVSMMLFDTFLYGVMTWYIEAVFPGQYGIPRPWYFPCTKSYW 865

[Close]

BLAST of SMED30024029 vs. UniProt/SwissProt
Match: sp|Q8R420|ABCA3_MOUSE (ATP-binding cassette sub-family A member 3 OS=Mus musculus OX=10090 GN=Abca3 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.143e-25
Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = -1

Query:   53 FFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICG--KSNLDEMESFSNP 487
            FF KA++A+  GG LYF  Y P+       + MT+     + LL+ V+++     I  +E    GIQ+ +L +   +D NF  G  + M+ +DS +Y L+ WY+E VFPGQFG+ +PW+F    +YW   CG  ++ + + E  S+P
Sbjct:  367 FFSKANIAAAVGGFLYFFTYTPYFFVAPRYNWMTLSQKLLSCLLSNVAMAMGAQLIGKFEAKGTGIQWRDLLNPVNVDDNFCFGQVLGMLLLDSALYGLVTWYVEAVFPGQFGVPQPWHFFLMPSYW---CGNPRTVVGKEEEGSDP 510

[Close]

BLAST of SMED30024029 vs. UniProt/SwissProt
Match: sp|Q7TNJ2|ABCA7_RAT (ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus OX=10116 GN=Abca7 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.594e-25
Identity = 49/132 (37.12%), Postives = 77/132 (58.33%), Query Frame = -1

Query:   92 FFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICG 487
            FF +A++A+  GG+ YF  YLP+++ V  ++ + +    A +LL+ V+       +A  E+  DG Q+ NL      D+ F +      + +D+VIY L  WY+E V PGQ+G+ +PWNFPF R+YW   CG
Sbjct:  647 FFSRANLAAACGGLAYFALYLPYVLCVAWRERLPLGGLLAVSLLSPVAFGFGCESLALLEEQGDGAQWHNLGTGPAEDV-FSLAQVSAFLLLDAVIYGLALWYLEAVCPGQYGIPEPWNFPFRRSYW---CG 774

[Close]

BLAST of SMED30024029 vs. UniProt/SwissProt
Match: sp|Q99758|ABCA3_HUMAN (ATP-binding cassette sub-family A member 3 OS=Homo sapiens OX=9606 GN=ABCA3 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.082e-25
Identity = 50/133 (37.59%), Postives = 76/133 (57.14%), Query Frame = -1

Query:   89 FFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGK 487
            FF KA++A+  GG LYF  Y+P+       + MT+     + LL+ V+++     I  +E    GIQ+ +L     +D +F  G  + M+ +DSV+Y L+ WY+E VFPGQFG+ +PW F    +YW   CGK
Sbjct:  367 FFSKANMAAAFGGFLYFFTYIPYFFVAPRYNWMTLSQKLCSCLLSNVAMAMGAQLIGKFEAKGMGIQWRDLLSPVNVDDDFCFGQVLGMLLLDSVLYGLVTWYMEAVFPGQFGVPQPWYFFIMPSYW---CGK 496

[Close]

BLAST of SMED30024029 vs. TrEMBL
Match: A0A1I8G995 (ABC transporter domain-containing protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.120e-32
Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = -1

Query:   86 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKS 490
            +FF  +SVA+   G++YF+ Y+P+ +  +  DSMT P Y  + L+ Q++      FI  WE ++ G+Q  N +DS +    F     +VMMWIDS I +L+ WY+E VFPG +G+ KPW FPF+ +YW   CG+S
Sbjct: 1665 IFFSNSSVAAAFAGVIYFLGYVPYSVVDSFSDSMTRPQYLLSCLIPQLAFGVGCKFIGSWELASVGLQHKNFYDSPLATSEFTFNQVVVMMWIDSGILMLLTWYLEKVFPGAYGVPKPWYFPFSPSYW---CGQS 1796

[Close]

BLAST of SMED30024029 vs. TrEMBL
Match: A0A1I8GAM3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.856e-31
Identity = 54/134 (40.30%), Postives = 82/134 (61.19%), Query Frame = -1

Query:   89 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGK 490
            +FF  +SVA+    ++YF  YLPF +     +SMT   Y  + L+ Q++      FI+ WE ++ G+Q+ N FDS   +     G  ++M+WIDS I++L+ WY+E VFPG+FG+ KPW FPF  ++W   CGK
Sbjct: 3309 IFFSNSSVAAAFARVIYFAGYLPFNLLETFGNSMTRTHYILSCLIPQLAFGVGCKFISNWELASVGLQYDNFFDSPAANGELSFGLVILMLWIDSAIFMLLTWYLEKVFPGEFGVPKPWFFPFQPSFW---CGK 3439

[Close]

BLAST of SMED30024029 vs. TrEMBL
Match: A0A1I8FY36 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.235e-30
Identity = 56/136 (41.18%), Postives = 84/136 (61.76%), Query Frame = -1

Query:   83 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSN 490
            +FF  +SVA+   G++YF+ Y+P+ +  +  DSMT P Y  + L+ Q++      FI  WE ++ G+Q  N +DS +    F     +VMMWIDS I +L+ WY+E VFPG +G+ KPW FPF+ +YW   CG+S 
Sbjct:  874 IFFSNSSVAAAFAGVIYFLGYVPYSVVDSFSDSMTRPQYLLSCLIPQLAFGVGCKFIGSWELASVGLQHKNFYDSPLATSEFTFNQVVVMMWIDSGILMLLTWYLEKVFPGAYGVPKPWYFPFSPSYW---CGQSK 1006

[Close]

BLAST of SMED30024029 vs. TrEMBL
Match: A0A1I8GCG0 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.770e-30
Identity = 56/136 (41.18%), Postives = 84/136 (61.76%), Query Frame = -1

Query:   83 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSN 490
            +FF  +SVA+   G++YF+ Y+P+ +  +  DSMT P Y  + L+ Q++      FI  WE ++ G+Q  N +DS +    F     +VMMWIDS I +L+ WY+E VFPG +G+ KPW FPF+ +YW   CG+S 
Sbjct:  873 IFFSNSSVAAAFAGVIYFLGYVPYSVVDSFSDSMTRPQYLLSCLIPQLAFGVGCKFIGSWELASVGLQHKNFYDSPLATSEFTFNQVVVMMWIDSGILMLLTWYLEKVFPGAYGVPKPWYFPFSPSYW---CGQSK 1005

[Close]

BLAST of SMED30024029 vs. TrEMBL
Match: A0A267E4U2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig028120g1 PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.777e-30
Identity = 56/136 (41.18%), Postives = 84/136 (61.76%), Query Frame = -1

Query:   83 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSN 490
            +FF  +SVA+   G++YF+ Y+P+ +  +  DSMT P Y  + L+ Q++      FI  WE ++ G+Q  N +DS +    F     +VMMWIDS I +L+ WY+E VFPG +G+ KPW FPF+ +YW   CG+S 
Sbjct:  760 IFFSNSSVAAAFAGVIYFLGYVPYSVVDSFSDSMTRPQYLLSCLIPQLAFGVGCKFIGSWELASVGLQHKNFYDSPLATSEFTFNQVVVMMWIDSGILMLLTWYLEKVFPGAYGVPKPWYFPFSPSYW---CGQSK 892

[Close]

BLAST of SMED30024029 vs. Ensembl Cavefish
Match: ENSAMXT00000016919.2 (pep primary_assembly:Astyanax_mexicanus-2.0:8:9912642:9956080:1 gene:ENSAMXG00000016432.2 transcript:ENSAMXT00000016919.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 115.161 bits (287), Expect = 5.210e-30
Identity = 50/126 (39.68%), Postives = 84/126 (66.67%), Query Frame = -1

Query:  107 FDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYW 484
            F +A++A+  GGI+YF  YLP+++ V  QD + +P    A+LL+ V+      + A +E+   GIQ+ NLF S +   ++ +   +++M++D+ IY ++ WYIE VFPGQ+G+ +PW FPFT++YW
Sbjct:  635 FARANLAAACGGIIYFTLYLPYVLCVAWQDYIGLPAKVIASLLSPVAFGFGCEYFALFEEQGVGIQWKNLFSSPMEKDDYSLTTSIIIMYVDAFIYGVMTWYIEAVFPGQYGIPRPWYFPFTKSYW 760

[Close]

BLAST of SMED30024029 vs. Ensembl Cavefish
Match: ENSAMXT00000022236.2 (pep primary_assembly:Astyanax_mexicanus-2.0:21:13397857:13560117:1 gene:ENSAMXG00000021540.2 transcript:ENSAMXT00000022236.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 112.079 bits (279), Expect = 7.120e-29
Identity = 57/155 (36.77%), Postives = 92/155 (59.35%), Query Frame = -1

Query:   32 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWIS--ICGKSNLDEMESFSNPLNEPIPN 490
            VFF +A++A+  GG++YF+ YLP ++    +D +T     A +LL+ V+        A +E+   GIQ+SN+F S+  D  +     +VMM +D+++Y ++ WYIE VFPGQ+G+ KPW FPFT +YW    +   +  D ++  S  L +P P 
Sbjct:  502 VFFSRANLAAACGGLIYFLLYLPHVLCQAWRDVITFRAKLATSLLSCVAFGYGCENFARYEEQGVGIQWSNIFVSSQEDDPYSFFVSIVMMLVDTLMYWILTWYIENVFPGQYGIPKPWYFPFTSSYWCGTPVGSDTEPDALDGSSRYLEKPPPG 656

[Close]

BLAST of SMED30024029 vs. Ensembl Cavefish
Match: abca4a (retinal-specific ATP-binding cassette transporter-like [Source:NCBI gene;Acc:103024609])

HSP 1 Score: 110.538 bits (275), Expect = 2.271e-28
Identity = 54/159 (33.96%), Postives = 96/159 (60.38%), Query Frame = -1

Query:   14 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNPLNEPIPNESLNER 490
            VFF+KA++A+   GILYF FYLP L     QD +T  M   A+L++QV+      +++ +E+   G+Q+ N+  S +    F     ++MM +D+V+Y ++AWY+++VFPGQ+G+ +P+ FP   +YW+++            +NP  + +P +S+ +R
Sbjct:  753 VFFNKANLAAACSGILYFSFYLPHLACFTWQDRITKDMKIMASLMSQVAFGFGTEYLSRYEEQGLGLQWDNIHTSPLEGDEFSFHTSIIMMLLDTVLYAVLAWYLDSVFPGQYGIGRPFYFPIQPSYWLNL------------TNP-TKAVPEKSVVKR 898

[Close]

BLAST of SMED30024029 vs. Ensembl Cavefish
Match: abca4a (retinal-specific ATP-binding cassette transporter-like [Source:NCBI gene;Acc:103024609])

HSP 1 Score: 110.538 bits (275), Expect = 2.408e-28
Identity = 54/159 (33.96%), Postives = 96/159 (60.38%), Query Frame = -1

Query:   14 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNPLNEPIPNESLNER 490
            VFF+KA++A+   GILYF FYLP L     QD +T  M   A+L++QV+      +++ +E+   G+Q+ N+  S +    F     ++MM +D+V+Y ++AWY+++VFPGQ+G+ +P+ FP   +YW+++            +NP  + +P +S+ +R
Sbjct:  753 VFFNKANLAAACSGILYFSFYLPHLACFTWQDRITKDMKIMASLMSQVAFGFGTEYLSRYEEQGLGLQWDNIHTSPLEGDEFSFHTSIIMMLLDTVLYAVLAWYLDSVFPGQYGIGRPFYFPIQPSYWLNL------------TNP-TKAVPEKSVVKR 898

[Close]

BLAST of SMED30024029 vs. Ensembl Cavefish
Match: abca1a (ATP-binding cassette sub-family A member 1-like [Source:NCBI gene;Acc:103028164])

HSP 1 Score: 107.842 bits (268), Expect = 2.424e-27
Identity = 49/135 (36.30%), Postives = 83/135 (61.48%), Query Frame = -1

Query:   86 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKS 490
              F +A++A+  GGI+YF  YLP+++ V  QD +        +LL+ V+      + A +E+   GIQ+SNL  S + + ++ +   + +M  D+++Y ++ WYIE VFPGQ+G+ +PW FPFT++YW   CG+ 
Sbjct:  741 TIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGAKVVVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPLEEDSYSLTTSISLMLFDALLYAVMTWYIEAVFPGQYGIPRPWYFPFTKSYW---CGEK 872

[Close]

BLAST of SMED30024029 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002495.1 (pep scaffold:Pmarinus_7.0:GL480265:53:27909:1 gene:ENSPMAG00000002218.1 transcript:ENSPMAT00000002495.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 102.834 bits (255), Expect = 2.149e-26
Identity = 51/146 (34.93%), Postives = 85/146 (58.22%), Query Frame = -1

Query:   53 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNP 490
             FF +A++A+ +GGI+YF FYLP+++ V  Q+ +T  +  + ++ + V+ S    F + +E+   G+Q+ N+F S +   ++     + MM  D+ +Y L+  YIE VFPGQ+G+ KPW FP TR YW     +  L E  +   P
Sbjct:  195 TFFSRANLAAATGGIVYFSFYLPYVLCVAWQNQITYSVKISTSIFSTVAFSFGSEFFSLYEEQGVGMQWENVFSSPVEGEDYTFISSIFMMLFDAFVYGLLTVYIENVFPGQYGVPKPWYFPCTRAYWRGDTMEKELYETIAQKQP 340

[Close]

BLAST of SMED30024029 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004117.1 (pep scaffold:Pmarinus_7.0:GL489716:190:6182:-1 gene:ENSPMAG00000003765.1 transcript:ENSPMAT00000004117.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 85.1149 bits (209), Expect = 2.619e-20
Identity = 48/159 (30.19%), Postives = 86/159 (54.09%), Query Frame = -1

Query:   29 VFFDKASVASVSGGILYFVFYLPFLIFVNLQ-----DSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNPLNEPIPNE 490
            V + KA +A+  GGI+YF+ Y+P++ +V ++     D +T      A+L++  +      + A +E +  GIQ+     S +   +F +   ++M+ +DSV+Y ++ WYIE V PG +GL +PW FP  R+YW+   G+++  E   +     E  P  
Sbjct:  188 VLYSKARMAAACGGIMYFLSYVPYM-YVAIREEVAHDKITAFEKCIASLMSTTAFGLGAKYFALYEVAGVGIQWHTFRQSPVEGDDFNLSLALLMLLLDSVVYGVLTWYIEAVHPGTYGLPRPWYFPLQRSYWLG-SGRADAWEWSGYEARGMEKEPTH 344

[Close]

BLAST of SMED30024029 vs. Ensembl Sea Lamprey
Match: abca12 (ATP-binding cassette, sub-family A (ABC1), member 12 [Source:ZFIN;Acc:ZDB-GENE-030131-9790])

HSP 1 Score: 66.2402 bits (160), Expect = 1.238e-13
Identity = 38/130 (29.23%), Postives = 66/130 (50.77%), Query Frame = -1

Query:  116 FDKASVASVSGGILYFVFYLPFLIFVNLQDSMT--VPMYYAAALLTQVSLSNSINFIAYWEQST-----DGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTR 484
            F   +VAS++   +Y + + PFL   +L   +T          LL+  + S + N I   +  T       +Q+SN++ S +   +    +   M+ ID+ IY ++ WYI  V+PG +GL++P+ F FTR
Sbjct:  191 FTHTNVASLTACFIYLLSFFPFLALSSLTLKLTRWQKSLIVRCLLSPTAFSYATNLIT--QHCTCIPMRALVQWSNMYHSPLFGDDVSFAYLCWMLIIDTAIYFILGWYIRNVYPGTYGLARPFYFLFTR 318

[Close]

BLAST of SMED30024029 vs. Ensembl Nematostella
Match: EDO46878 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RNL9])

HSP 1 Score: 105.916 bits (263), Expect = 3.237e-27
Identity = 50/128 (39.06%), Postives = 78/128 (60.94%), Query Frame = -1

Query:  107 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYW 490
            VFF +A+V++  GGI++FV YLP+ +    +  M      AA L +  +   + N++A +E+   G Q++NL+ S I    F +G+ M MM ID V+Y L  +YIE V PGQ+G+ +PW FP  ++YW
Sbjct:  206 VFFSRANVSAACGGIIFFVTYLPYTMVRWFEAFMNSSQIAAACLSSTTAFGVACNYLARYEEQGVGAQWNNLYASPIAGDEFSLGYAMGMMMIDGVLYALATFYIEAVMPGQYGIPRPWYFPLQKSYW 333

[Close]

BLAST of SMED30024029 vs. Ensembl Nematostella
Match: EDO38879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SBQ0])

HSP 1 Score: 90.8929 bits (224), Expect = 6.122e-22
Identity = 44/133 (33.08%), Postives = 77/133 (57.89%), Query Frame = -1

Query:  107 VFFDKASVASVSGGILYFVFYLPFLIFVNLQD-----SMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYW 490
             FF KA +A+  GGI+YF+ Y+PF +FV++++     ++      A +LL+  +      + A +E+  +G+Q+SN+  S I   +F +   +  +  D+ +Y+++ WYIE V PG +GL +PW FP    YW
Sbjct:  426 AFFSKAKLAAACGGIIYFLTYMPF-VFVSIREGAAHATIESSEKMAISLLSTSAFGLGARYFALYEEQGEGVQWSNIGKSPIRGDDFNLLKVLYFLVFDTFLYVILVWYIEAVHPGSYGLPRPWYFPIQPTYW 557

[Close]

BLAST of SMED30024029 vs. Ensembl Nematostella
Match: EDO48951 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RI12])

HSP 1 Score: 89.3521 bits (220), Expect = 2.123e-21
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = -1

Query:   29 VFFDKASVASVSGGILYFVFYLPFLIFVNLQ--DSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMES-----FSNPLNEPIPNE 490
            VFF   +++ + G +L++   LP+ +    +  D+++     +  LL    L      IA  E    G  FSNL  S   D +F +   + MM I S++YL++ WYI TVFPGQ+G+ KP+ FPF ++YW   CG S+ D +E+      +NP  E  P +
Sbjct:  337 VFFSNPTLSMLFGSVLWYAALLPYQLLAQNENYDTLSQSAKASMCLLPNTCLGIGATLIARLEGFKTGASFSNLASSPSADDHFSLAWVLGMMIISSLVYLILTWYISTVFPGQYGIPKPFYFPFMKSYW---CGFSHDDVVEAGLERVKNNPAIEDEPTD 494

[Close]

BLAST of SMED30024029 vs. Ensembl Medaka
Match: abca1a (ATP-binding cassette sub-family A member 1 [Source:NCBI gene;Acc:101163147])

HSP 1 Score: 109.383 bits (272), Expect = 5.384e-28
Identity = 51/143 (35.66%), Postives = 86/143 (60.14%), Query Frame = -1

Query:   62 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESF 490
              F +A++A+  GGI+YF  YLP+++ V  QD +        +LL+ V+      + A +E+   GIQ+SNL  S + + ++ +   + +M  D+V+Y ++ WYIE+VFPGQ+G+ +PW FPFT++YW   CG+     M + 
Sbjct:  743 TLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGAKVLVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEEDSYNLTTSICLMLFDAVLYGIMTWYIESVFPGQYGIPRPWYFPFTKSYW---CGEKENKNMSAL 882

[Close]

BLAST of SMED30024029 vs. Ensembl Medaka
Match: abca1a (ATP-binding cassette sub-family A member 1 [Source:NCBI gene;Acc:101163147])

HSP 1 Score: 109.383 bits (272), Expect = 5.813e-28
Identity = 51/143 (35.66%), Postives = 86/143 (60.14%), Query Frame = -1

Query:   62 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESF 490
              F +A++A+  GGI+YF  YLP+++ V  QD +        +LL+ V+      + A +E+   GIQ+SNL  S + + ++ +   + +M  D+V+Y ++ WYIE+VFPGQ+G+ +PW FPFT++YW   CG+     M + 
Sbjct:  730 TLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGAKVLVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEEDSYNLTTSICLMLFDAVLYGIMTWYIESVFPGQYGIPRPWYFPFTKSYW---CGEKENKNMSAL 869

[Close]

BLAST of SMED30024029 vs. Ensembl Medaka
Match: abca1a (ATP-binding cassette sub-family A member 1 [Source:NCBI gene;Acc:101163147])

HSP 1 Score: 109.383 bits (272), Expect = 6.104e-28
Identity = 51/143 (35.66%), Postives = 86/143 (60.14%), Query Frame = -1

Query:   62 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESF 490
              F +A++A+  GGI+YF  YLP+++ V  QD +        +LL+ V+      + A +E+   GIQ+SNL  S + + ++ +   + +M  D+V+Y ++ WYIE+VFPGQ+G+ +PW FPFT++YW   CG+     M + 
Sbjct:  743 TLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGAKVLVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEEDSYNLTTSICLMLFDAVLYGIMTWYIESVFPGQYGIPRPWYFPFTKSYW---CGEKENKNMSAL 882

[Close]

BLAST of SMED30024029 vs. Ensembl Medaka
Match: ENSORLT00000025407.2 (ATP-binding cassette sub-family A member 1 [Source:NCBI gene;Acc:101163308])

HSP 1 Score: 103.99 bits (258), Expect = 4.780e-26
Identity = 47/116 (40.52%), Postives = 75/116 (64.66%), Query Frame = -1

Query:  107 GGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYW 454
            GGI+YF  YLP+++ V  QD +       A+LL+ V+      + A +E+   GIQ+SNL  S + + +F +   +++M+ DS +Y ++ WYIE VFPGQ+G+ +PW FPFT++YW
Sbjct:  756 GGIIYFTLYLPYVLCVAWQDYIGYGAKVMASLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPLQEDDFSLRTTILVMYFDSFLYGVLTWYIEAVFPGQYGIPRPWYFPFTKSYW 871

[Close]

BLAST of SMED30024029 vs. Ensembl Medaka
Match: abca3b (ATP binding cassette subfamily A member 3 [Source:NCBI gene;Acc:101174998])

HSP 1 Score: 102.064 bits (253), Expect = 2.504e-25
Identity = 49/130 (37.69%), Postives = 79/130 (60.77%), Query Frame = -1

Query:  101 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWIS 490
             FF +A+VA+ +GG +YF+ YLP+L      D ++     +A L++ V+++     I  +E    GIQ+SNLFDS  +D +F +   + ++  DSV+Y L+AWY+E VFPG++G+  P  F    +YW S
Sbjct:  360 AFFSRANVAAAAGGFIYFLSYLPYLFLWPRYDLLSHGQKVSACLISNVAMAMGAQLIGMFEGKGTGIQWSNLFDSVTVDDDFSLAQVLCLLLFDSVLYGLVAWYVEAVFPGEYGVPLPSYFFLLPSYWCS 489

[Close]

BLAST of SMED30024029 vs. Planmine SMEST
Match: SMESG000068605.1 (SMESG000068605.1)

HSP 1 Score: 333.569 bits (854), Expect = 2.439e-106
Identity = 159/163 (97.55%), Postives = 160/163 (98.16%), Query Frame = -1

Query:    2 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNPLNEPIPNESLNERGFEH 490
            VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWY+ETVFPGQFGLSKPWNFPFTRNYW SICGKSNLDE ESFSN LNEPIPNESLNERGFEH
Sbjct:  539 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYVETVFPGQFGLSKPWNFPFTRNYWNSICGKSNLDETESFSNSLNEPIPNESLNERGFEH 701

[Close]

BLAST of SMED30024029 vs. Planmine SMEST
Match: SMESG000032891.1 (SMESG000032891.1)

HSP 1 Score: 214.542 bits (545), Expect = 8.574e-65
Identity = 104/167 (62.28%), Postives = 128/167 (76.65%), Query Frame = -1

Query:    5 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNPLNE---PIP--NESLNERGFE 490
            V FDKA+VASV+GGI+YF+ YLPF +F+NL D +T  MYY   LLTQV+  NSINFIA+WEQSTDG+QFSNLFDS +++LN GVGHCMVMMW+DSVIYLLIAWY+E+VFPGQ+G+ KPW F FTR+YW   C  S  D++    N  +    PIP  NE + + GFE
Sbjct:  501 VLFDKANVASVAGGIIYFISYLPFYVFLNLPDDVTDSMYYGVGLLTQVAFCNSINFIAFWEQSTDGVQFSNLFDSTVVNLNVGVGHCMVMMWVDSVIYLLIAWYVESVFPGQYGVGKPWYFLFTRHYW---CQNSASDKITLIDNHYSYESLPIPNINEGILKHGFE 664

[Close]

BLAST of SMED30024029 vs. Planmine SMEST
Match: SMESG000032861.1 (SMESG000032861.1)

HSP 1 Score: 213.001 bits (541), Expect = 3.108e-64
Identity = 98/164 (59.76%), Postives = 128/164 (78.05%), Query Frame = -1

Query:    5 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNPLNEPIP--NESLNERGFE 490
            VFFDKA+VA+V+GGI+YF+ YLPF +F+ + D +T  MYY   LLTQV+ SNSINFIA+WEQSTDG+QFSNLFDS +++LN GVGHCMVMMW+DSVIYLLIAWY+E+VFPGQ+G+ KPW F FT++YW        +  ++++    + PIP  NE + + GFE
Sbjct:  511 VFFDKANVAAVAGGIIYFISYLPFYVFITIPDDVTDSMYYGVGLLTQVAFSNSINFIAFWEQSTDGVQFSNLFDSTVVNLNVGVGHCMVMMWVDSVIYLLIAWYVESVFPGQYGVGKPWYFLFTQHYWCQNSASYKITPIDNYYPYESSPIPNINEGILKHGFE 674

[Close]

BLAST of SMED30024029 vs. Planmine SMEST
Match: SMESG000032896.1 (SMESG000032896.1)

HSP 1 Score: 211.075 bits (536), Expect = 1.353e-63
Identity = 101/167 (60.48%), Postives = 127/167 (76.05%), Query Frame = -1

Query:    5 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNPLNE---PIP--NESLNERGFE 490
            VFFDKA+VA+V+GGI+Y + YLPF +F+ + D +T  MYY   LLTQV+  NSINFIA+WEQSTDG+QFSNLFDS +++LN GVGHCMVMMW+DSVIYLLIAWY+E+VFPGQ+G+ KPW F FTR+YW   C  S  D++    N  +    PIP  NE + + GFE
Sbjct:  501 VFFDKANVAAVAGGIIYSILYLPFYVFITIPDDVTDSMYYGVGLLTQVAFCNSINFIAFWEQSTDGVQFSNLFDSTVVNLNVGVGHCMVMMWVDSVIYLLIAWYVESVFPGQYGVGKPWYFLFTRHYW---CQNSASDKITLIDNHYSYESLPIPNINEGILKHGFE 664

[Close]

BLAST of SMED30024029 vs. Planmine SMEST
Match: SMESG000032896.1 (SMESG000032896.1)

HSP 1 Score: 211.075 bits (536), Expect = 1.448e-63
Identity = 101/167 (60.48%), Postives = 127/167 (76.05%), Query Frame = -1

Query:    5 VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSLSNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLLIAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNPLNE---PIP--NESLNERGFE 490
            VFFDKA+VA+V+GGI+Y + YLPF +F+ + D +T  MYY   LLTQV+  NSINFIA+WEQSTDG+QFSNLFDS +++LN GVGHCMVMMW+DSVIYLLIAWY+E+VFPGQ+G+ KPW F FTR+YW   C  S  D++    N  +    PIP  NE + + GFE
Sbjct:  498 VFFDKANVAAVAGGIIYSILYLPFYVFITIPDDVTDSMYYGVGLLTQVAFCNSINFIAFWEQSTDGVQFSNLFDSTVVNLNVGVGHCMVMMWVDSVIYLLIAWYVESVFPGQYGVGKPWYFLFTRHYW---CQNSASDKITLIDNHYSYESLPIPNINEGILKHGFE 661

The following BLAST results are available for this feature:

BLAST of SMED30024029 vs. Ensembl Human
BLAST of SMED30024029 vs. Ensembl Celegans
BLAST of SMED30024029 vs. Ensembl Fly
BLAST of SMED30024029 vs. Ensembl Zebrafish
BLAST of SMED30024029 vs. Ensembl Xenopus
BLAST of SMED30024029 vs. Ensembl Mouse
BLAST of SMED30024029 vs. UniProt/SwissProt
BLAST of SMED30024029 vs. TrEMBL
BLAST of SMED30024029 vs. Ensembl Cavefish
BLAST of SMED30024029 vs. Ensembl Sea Lamprey
BLAST of SMED30024029 vs. Ensembl Yeast
BLAST of SMED30024029 vs. Ensembl Nematostella
BLAST of SMED30024029 vs. Ensembl Medaka
BLAST of SMED30024029 vs. Planmine SMEST

BLAST of SMED30024029 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ABCA1	8.031e-27	37.50	ATP binding cassette subfamily A member 1 [Source:...	[more]
ABCA3	4.335e-26	37.59	ATP binding cassette subfamily A member 3 [Source:...	[more]
ABCA7	2.920e-25	35.61	ATP binding cassette subfamily A member 7 [Source:...	[more]
ABCA4	4.227e-25	32.14	ATP binding cassette subfamily A member 4 [Source:...	[more]
ABCA12	1.223e-22	32.03	ATP binding cassette subfamily A member 12 [Source...	[more]

BLAST of SMED30024029 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3


Match Name	E-value	Identity	Description
abt-2	7.249e-15	29.46	ABC Transporter family [Source:UniProtKB/TrEMBL;A...	[more]
abt-2	7.612e-15	29.46	ABC Transporter family [Source:UniProtKB/TrEMBL;A...	[more]
abt-4	6.400e-13	25.17	ABC Transporter family [Source:UniProtKB/TrEMBL;A...	[more]

BLAST of SMED30024029 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ABCA	2.501e-27	32.70	gene:FBgn0031170 transcript:FBtr0306679	[more]
ABCA	2.548e-27	32.70	gene:FBgn0031170 transcript:FBtr0332489	[more]
ABCA	2.624e-27	32.70	gene:FBgn0031170 transcript:FBtr0332488	[more]
CG6052	6.126e-15	30.83	gene:FBgn0036747 transcript:FBtr0075195	[more]
CG31213	1.128e-9	34.45	gene:FBgn0051213 transcript:FBtr0335242	[more]

BLAST of SMED30024029 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
abca1b	5.975e-28	40.52	ATP-binding cassette, sub-family A (ABC1), member ...	[more]
abca1b	6.091e-28	40.52	ATP-binding cassette, sub-family A (ABC1), member ...	[more]
abca1a	1.088e-27	37.04	ATP-binding cassette, sub-family A (ABC1), member ...	[more]
abca1a	1.088e-27	37.04	ATP-binding cassette, sub-family A (ABC1), member ...	[more]
abca12	3.836e-25	33.58	ATP-binding cassette, sub-family A (ABC1), member ...	[more]

BLAST of SMED30024029 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ABCA1	2.577e-26	34.25	ATP binding cassette subfamily A member 1 [Source:...	[more]
ABCA1	2.679e-26	34.25	ATP binding cassette subfamily A member 1 [Source:...	[more]
ABCA1	2.710e-26	34.25	ATP binding cassette subfamily A member 1 [Source:...	[more]
ABCA1	2.711e-26	34.25	ATP binding cassette subfamily A member 1 [Source:...	[more]
ABCA1	2.763e-26	34.25	ATP binding cassette subfamily A member 1 [Source:...	[more]

BLAST of SMED30024029 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Abca1	4.723e-27	34.93	ATP-binding cassette, sub-family A (ABC1), member ...	[more]
Abca3	1.634e-26	35.37	ATP-binding cassette, sub-family A (ABC1), member ...	[more]
Abca3	1.634e-26	35.37	ATP-binding cassette, sub-family A (ABC1), member ...	[more]
Abca3	2.224e-26	35.37	ATP-binding cassette, sub-family A (ABC1), member ...	[more]
Abca4	4.193e-25	31.55	ATP-binding cassette, sub-family A (ABC1), member ...	[more]

BLAST of SMED30024029 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P41233\|ABCA1_MOUSE	3.304e-26	34.93	Phospholipid-transporting ATPase ABCA1 OS=Mus musc...	[more]
sp\|O95477\|ABCA1_HUMAN	3.857e-26	37.50	Phospholipid-transporting ATPase ABCA1 OS=Homo sap...	[more]
sp\|Q8R420\|ABCA3_MOUSE	1.143e-25	35.37	ATP-binding cassette sub-family A member 3 OS=Mus ...	[more]
sp\|Q7TNJ2\|ABCA7_RAT	1.594e-25	37.12	ATP-binding cassette sub-family A member 7 OS=Ratt...	[more]
sp\|Q99758\|ABCA3_HUMAN	2.082e-25	37.59	ATP-binding cassette sub-family A member 3 OS=Homo...	[more]

BLAST of SMED30024029 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A1I8G995	3.120e-32	41.48	ABC transporter domain-containing protein OS=Macro...	[more]
A0A1I8GAM3	5.856e-31	40.30	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A1I8FY36	9.235e-30	41.18	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A1I8GCG0	9.770e-30	41.18	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A267E4U2	9.777e-30	41.18	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]

BLAST of SMED30024029 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSAMXT00000016919.2	5.210e-30	39.68	pep primary_assembly:Astyanax_mexicanus-2.0:8:9912...	[more]
ENSAMXT00000022236.2	7.120e-29	36.77	pep primary_assembly:Astyanax_mexicanus-2.0:21:133...	[more]
abca4a	2.271e-28	33.96	retinal-specific ATP-binding cassette transporter-...	[more]
abca4a	2.408e-28	33.96	retinal-specific ATP-binding cassette transporter-...	[more]
abca1a	2.424e-27	36.30	ATP-binding cassette sub-family A member 1-like [S...	[more]

BLAST of SMED30024029 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ENSPMAT00000002495.1	2.149e-26	34.93	pep scaffold:Pmarinus_7.0:GL480265:53:27909:1 gene...	[more]
ENSPMAT00000004117.1	2.619e-20	30.19	pep scaffold:Pmarinus_7.0:GL489716:190:6182:-1 gen...	[more]
abca12	1.238e-13	29.23	ATP-binding cassette, sub-family A (ABC1), member ...	[more]

BLAST of SMED30024029 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30024029 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3


Match Name	E-value	Identity	Description
EDO46878	3.237e-27	39.06	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38879	6.122e-22	33.08	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO48951	2.123e-21	33.54	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30024029 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
abca1a	5.384e-28	35.66	ATP-binding cassette sub-family A member 1 [Source...	[more]
abca1a	5.813e-28	35.66	ATP-binding cassette sub-family A member 1 [Source...	[more]
abca1a	6.104e-28	35.66	ATP-binding cassette sub-family A member 1 [Source...	[more]
ENSORLT00000025407.2	4.780e-26	40.52	ATP-binding cassette sub-family A member 1 [Source...	[more]
abca3b	2.504e-25	37.69	ATP binding cassette subfamily A member 3 [Source:...	[more]

BLAST of SMED30024029 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000068605.1	2.439e-106	97.55	SMESG000068605.1	[more]
SMESG000032891.1	8.574e-65	62.28	SMESG000032891.1	[more]
SMESG000032861.1	3.108e-64	59.76	SMESG000032861.1	[more]
SMESG000032896.1	1.353e-63	60.48	SMESG000032896.1	[more]
SMESG000032896.1	1.448e-63	60.48	SMESG000032896.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30024029 ID=SMED30024029|Name=SMED30024029|organism=Schmidtea mediterranea sexual|type=transcript|length=490bp
CGTGTTCAAATCCTCGCTCATTCAGAGATTCGTTTGGAATCGGCTCATTT
AAAGGATTAGAAAACGATTCCATCTCATCCAAGTTGGATTTTCCACAAAT
CGAAATCCAATAGTTACGAGTGAAAGGAAAATTCCACGGTTTCGATAGGC
CAAATTGGCCGGGAAATACAGTTTCAATGTACCAAGCTATTAATAAATAA
ATCACACTATCAATCCACATCATCACCATGCAATGGCCGACTCCAAAATT
CAGATCCATTATTGCACTGTCAAACAGGTTGCTAAATTGTATCCCATCTG
TCGACTGTTCCCAATATGCAATGAAATTAATAGAATTACTCAACGAAACC
TGAGTCAACAATGCCGCAGCGTAATACATCGGCACGGTCATGCTGTCCTG
CAAGTTGACAAATATCAAAAACGGCAAATAAAATACAAAGTAAAGAATTC
CCCCAGAAACAGATGCAACACTTGCTTTATCAAAAAACAC

protein sequence of SMED30024029-orf-1

>SMED30024029-orf-1 ID=SMED30024029-orf-1|Name=SMED30024029-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=163bp
VFFDKASVASVSGGILYFVFYLPFLIFVNLQDSMTVPMYYAAALLTQVSL
SNSINFIAYWEQSTDGIQFSNLFDSAIMDLNFGVGHCMVMMWIDSVIYLL
IAWYIETVFPGQFGLSKPWNFPFTRNYWISICGKSNLDEMESFSNPLNEP
IPNESLNERGFEH

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000418	head

Vocabulary: **INTERPRO**
Term	Definition
IPR026082	ABCA

Vocabulary: **molecular function**
Term	Definition
GO:0042626	ATPase activity, coupled to transmembrane movement of substances

Vocabulary: **biological process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **cellular component**
Term	Definition
GO:0016021	integral component of membrane

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026082	ABC transporter A	PANTHER	PTHR19229	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	coord: 1..141
None	No IPR available	PANTHER	PTHR19229:SF216	ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 1A	coord: 1..141
None	No IPR available	TMHMM	TMhelix		coord: 82..104
None	No IPR available	TMHMM	TMhelix		coord: 39..61
None	No IPR available	TMHMM	TMhelix		coord: 7..29

Main menu

SMED30024029

Zeng et. al., 2018

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 24

Owlery

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