SMED30023981
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Alignments
SMED30023981 aligns in the following genomic locations:
Homology
BLAST of SMED30023981 vs. Ensembl Human
Match: POLRMT (RNA polymerase mitochondrial [Source:HGNC Symbol;Acc:HGNC:9200]) HSP 1 Score: 157.532 bits (397), Expect = 1.786e-51 Identity = 79/167 (47.31%), Postives = 105/167 (62.87%), Query Frame = -2 Query: 1561 ISWKTPMNFIVKQPYFAD-----------------DSDI-LKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2007 + W TP+ V QPY D + DI K + K KN FPPNFIHSLDS+HMMLTAL C+ K +TFVSVHDC+WTHA DV MN+ CRE+FV+LHS+PIL++LS +L+++ F P + ++ + L+ +PK G FD+ +V STYFFS Sbjct: 1068 VEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKR--FCSEPQKILEASQL--KETLQAVPKPGAFDLEQVKRSTYFFS 1230 HSP 2 Score: 67.0106 bits (162), Expect = 1.786e-51 Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVYS V +EV R++DA+ G+ A +LEG ++RKV+KQTVMT VYGVT+YGG LQI + L+ L P + + + YL + S+ E+F+ IQ+W E Sbjct: 953 QDVYSGVAAQVEVFRRQDAQRGMRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTE 1056
BLAST of SMED30023981 vs. Ensembl Human
Match: POLRMT (RNA polymerase mitochondrial [Source:HGNC Symbol;Acc:HGNC:9200]) HSP 1 Score: 125.176 bits (313), Expect = 5.179e-33 Identity = 53/78 (67.95%), Postives = 68/78 (87.18%), Query Frame = -2 Query: 1690 KNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKY 1923 K KN FPPNFIHSLDS+HMMLTAL C+ K +TFVSVHDC+WTHA DV MN+ CRE+FV+LHS+PIL++LS +L++++ Sbjct: 31 KQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRF 108
BLAST of SMED30023981 vs. Ensembl Human
Match: KANSL3 (KAT8 regulatory NSL complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:25473]) HSP 1 Score: 67.781 bits (164), Expect = 7.043e-11 Identity = 69/327 (21.10%), Postives = 140/327 (42.81%), Query Frame = 2 Query: 518 QISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQLNI---------WAQNQKILHRFSWASLLEII-HREPEKL-----------NEDLSEFSWNIENR-WK----------PIIIHIYSDRWSDSNRLQKFIKILKTFSTVVDFPFDDSGRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNF 1402 + ++R+ A+ W + H L+E LS L Y+++L+ + + K+ T++D++ + A+ +L + W + ++ H +P KL S F + +R W+ P+ H+ ++ + +L+ ++ G +R K L++ + ++GW+ GAL+ + + Y T+V +CLG PL + G RG + +D + + L + G S + + +EDF++++ R + + +GG D LR+S ++Q +VDR I I +F Sbjct: 173 KCARRVRQALASVSWDTKLIQWLHTTLVETLSLPMLAAYLDALQTL--KGKIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLSCLGKVIPVATHLLNN--------GSGVGVLQCLEHMI-------GAVRSKV------LEIHSHFPHKPIILIGWNTGALVAC--HVSVMEYVTAV----VCLGFPLLTVDGPRGDV-DDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKI--RAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDF 467
BLAST of SMED30023981 vs. Ensembl Human
Match: KANSL3 (KAT8 regulatory NSL complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:25473]) HSP 1 Score: 67.781 bits (164), Expect = 7.557e-11 Identity = 70/327 (21.41%), Postives = 141/327 (43.12%), Query Frame = 2 Query: 518 QISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQLNI---------WAQNQKILHRFSWASLLEII-HREPEKL-----------NEDLSEFSWNIENR-WK----------PIIIHIYSDRWSDSNRLQKFIKILKTFSTVVDFPFDDSGRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNF 1402 + ++R+ A+ W + H L+E LS L Y+++L+ + + K+ T++D++ + A+ +L + W + ++ H +P KL S F + +R W+ P+ H+ ++ + +L+ ++ G +R K ++ HK + ++GW+ GAL+ + + Y T+V +CLG PL + G RG + +D + + L + G S + + +EDF++++ R + + +GG D LR+S ++Q +VDR I I +F Sbjct: 173 KCARRVRQALASVSWDTKLIQWLHTTLVETLSLPMLAAYLDALQTL--KGKIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLSCLGKVIPVATHLLNN--------GSGVGVLQCLEHMI-------GAVRSKVL----EIHSHFPHKP--IILIGWNTGALVAC--HVSVMEYVTAV----VCLGFPLLTVDGPRGDV-DDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKI--RAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDF 467
BLAST of SMED30023981 vs. Ensembl Human
Match: KANSL3 (KAT8 regulatory NSL complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:25473]) HSP 1 Score: 67.3958 bits (163), Expect = 8.521e-11 Identity = 70/327 (21.41%), Postives = 141/327 (43.12%), Query Frame = 2 Query: 518 QISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQLNI---------WAQNQKILHRFSWASLLEII-HREPEKL-----------NEDLSEFSWNIENR-WK----------PIIIHIYSDRWSDSNRLQKFIKILKTFSTVVDFPFDDSGRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNF 1402 + ++R+ A+ W + H L+E LS L Y+++L+ + + K+ T++D++ + A+ +L + W + ++ H +P KL S F + +R W+ P+ H+ ++ + +L+ ++ G +R K ++ HK + ++GW+ GAL+ + + Y T+V +CLG PL + G RG + +D + + L + G S + + +EDF++++ R + + +GG D LR+S ++Q +VDR I I +F Sbjct: 173 KCARRVRQALASVSWDTKLIQWLHTTLVETLSLPMLAAYLDALQTL--KGKIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLSCLGKVIPVATHLLNN--------GSGVGVLQCLEHMI-------GAVRSKVL----EIHSHFPHKP--IILIGWNTGALVAC--HVSVMEYVTAV----VCLGFPLLTVDGPRGDV-DDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKI--RAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDF 467
BLAST of SMED30023981 vs. Ensembl Celegans
Match: rpom-1 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q8WQA3]) HSP 1 Score: 136.346 bits (342), Expect = 3.348e-42 Identity = 70/157 (44.59%), Postives = 97/157 (61.78%), Query Frame = -2 Query: 1561 ISWKTPMNFIVKQPYFA----DDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKY----QFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2007 + W TP+ V QPY IL +K +AFPPNF+HSLDSTHMMLT+L+C ++ ITF +VHDCFWTHA VD+MN+ CR++FV LHSQPI+E S++ + Y +I P ++ ++++ + G DI +V DS YFFS Sbjct: 986 VEWITPLGLPVVQPYCKLVERKGKLILAPVPMKQVDAFPPNFVHSLDSTHMMLTSLNCAQRGITFAAVHDCFWTHANSVDQMNEICRQQFVSLHSQPIVEQCSEWFKKTYLTPKMAKILPEKDFQ----KYSEIFTANIEHGDLDIEKVKDSVYFFS 1138 HSP 2 Score: 56.225 bits (134), Expect = 3.348e-42 Identity = 51/138 (36.96%), Postives = 82/138 (59.42%), Query Frame = -3 Query: 2007 DVYSDVLEHLEVKRKEDAKNGVEEAILLEGL-------LSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIEVLIVAKY*KIFIKFASCLLTSVDYAKPI 2399 DVYSDV + +E KR++D ++ E+ + L + RKVIKQTVMTTVYGVT YG LQI R+LK ++ +P ++ A YL++ T S+ + F S+ +++WF ++ K +S L+ +V++ P+ Sbjct: 866 DVYSDVAQRVEQKRQQDEQSNGEDCDVARKLREALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKAMD-IPGEDAAIFARYLARKTFASLNDAFTSSMALKDWF----------RLIAKGSSDLMKTVEWITPL 992
BLAST of SMED30023981 vs. Ensembl Celegans
Match: rpom-1 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q8WQA3]) HSP 1 Score: 136.346 bits (342), Expect = 3.348e-42 Identity = 70/157 (44.59%), Postives = 97/157 (61.78%), Query Frame = -2 Query: 1561 ISWKTPMNFIVKQPYFA----DDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKY----QFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2007 + W TP+ V QPY IL +K +AFPPNF+HSLDSTHMMLT+L+C ++ ITF +VHDCFWTHA VD+MN+ CR++FV LHSQPI+E S++ + Y +I P ++ ++++ + G DI +V DS YFFS Sbjct: 986 VEWITPLGLPVVQPYCKLVERKGKLILAPVPMKQVDAFPPNFVHSLDSTHMMLTSLNCAQRGITFAAVHDCFWTHANSVDQMNEICRQQFVSLHSQPIVEQCSEWFKKTYLTPKMAKILPEKDFQ----KYSEIFTANIEHGDLDIEKVKDSVYFFS 1138 HSP 2 Score: 56.225 bits (134), Expect = 3.348e-42 Identity = 51/138 (36.96%), Postives = 82/138 (59.42%), Query Frame = -3 Query: 2007 DVYSDVLEHLEVKRKEDAKNGVEEAILLEGL-------LSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIEVLIVAKY*KIFIKFASCLLTSVDYAKPI 2399 DVYSDV + +E KR++D ++ E+ + L + RKVIKQTVMTTVYGVT YG LQI R+LK ++ +P ++ A YL++ T S+ + F S+ +++WF ++ K +S L+ +V++ P+ Sbjct: 866 DVYSDVAQRVEQKRQQDEQSNGEDCDVARKLREALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKAMD-IPGEDAAIFARYLARKTFASLNDAFTSSMALKDWF----------RLIAKGSSDLMKTVEWITPL 992
BLAST of SMED30023981 vs. Ensembl Celegans
Match: rpom-1 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q8WQA3]) HSP 1 Score: 136.346 bits (342), Expect = 1.064e-39 Identity = 70/157 (44.59%), Postives = 97/157 (61.78%), Query Frame = -2 Query: 1561 ISWKTPMNFIVKQPYFA----DDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKY----QFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2007 + W TP+ V QPY IL +K +AFPPNF+HSLDSTHMMLT+L+C ++ ITF +VHDCFWTHA VD+MN+ CR++FV LHSQPI+E S++ + Y +I P ++ ++++ + G DI +V DS YFFS Sbjct: 1004 VEWITPLGLPVVQPYCKLVERKGKLILAPVPMKQVDAFPPNFVHSLDSTHMMLTSLNCAQRGITFAAVHDCFWTHANSVDQMNEICRQQFVSLHSQPIVEQCSEWFKKTYLTPKMAKILPEKDFQ----KYSEIFTANIEHGDLDIEKVKDSVYFFS 1156 HSP 2 Score: 47.3654 bits (111), Expect = 1.064e-39 Identity = 51/146 (34.93%), Postives = 85/146 (58.22%), Query Frame = -3 Query: 2007 DVYSDVLEHLEVKRKEDAKNGVEEAILLEGL-------LSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGE--IFA------SATNIQNWFIEVLIVAKY*KIFIKFASCLLTSVDYAKPI 2399 DVYSDV + +E KR++D ++ E+ + L + RKVIKQTVMTTVYGVT YG LQI R+LK ++ +P ++ A YL++ T S+ + IFA + ++ + F + + + ++ K +S L+ +V++ P+ Sbjct: 866 DVYSDVAQRVEQKRQQDEQSNGEDCDVARKLREALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKAMD-IPGEDAAIFARYLARKTFASLNDAAIFARYLARKTFASLNDAFTSSMALKDWFRLIAKGSSDLMKTVEWITPL 1010
BLAST of SMED30023981 vs. Ensembl Fly
Match: mtRNApol (gene:FBgn0261938 transcript:FBtr0332273) HSP 1 Score: 172.555 bits (436), Expect = 1.631e-57 Identity = 88/178 (49.44%), Postives = 113/178 (63.48%), Query Frame = -2 Query: 1561 ISRLRKANISWKTPMNFIVKQPY------------FADDSDI-----LKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQ----INPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2031 IS + N+ W TP+ V QPY F +++ + + LK KNAFPPNFIHSLDS+HMMLT+L C + ITFVSVHDCFWTHA V E+N+ CRE+FV LHSQPILE LS+++ Y F+ IN ++ K N++LK +P+KG FD+R VLDS YFFS Sbjct: 1192 ISGVCSQNVEWVTPLGLPVVQPYNRQEMKHSPRSGFKVSANMPMDLYERPNILKQKNAFPPNFIHSLDSSHMMLTSLHCERQGITFVSVHDCFWTHANTVPELNRMCREQFVALHSQPILEQLSEFMRHTYSFKDSDFINDGSVEDLSKRQLNRILKQMPQKGDFDLRNVLDSVYFFS 1369 HSP 2 Score: 71.2478 bits (173), Expect = 1.631e-57 Identity = 53/104 (50.96%), Postives = 68/104 (65.38%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVYS V +E RK DA+NG+ A L G + RKVIKQTVMTTVYGVT+YG LQI R+LK+++ P + + YL+ T S+ E+F S IQ+WF E Sbjct: 1084 QDVYSAVAALVEKSRKADAQNGLHVAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDIDDFPKDWVWPASTYLTTKTFESLREMFTSTREIQDWFTE 1187
BLAST of SMED30023981 vs. Ensembl Fly
Match: mtRNApol (gene:FBgn0261938 transcript:FBtr0077989) HSP 1 Score: 172.555 bits (436), Expect = 1.631e-57 Identity = 88/178 (49.44%), Postives = 113/178 (63.48%), Query Frame = -2 Query: 1561 ISRLRKANISWKTPMNFIVKQPY------------FADDSDI-----LKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQ----INPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2031 IS + N+ W TP+ V QPY F +++ + + LK KNAFPPNFIHSLDS+HMMLT+L C + ITFVSVHDCFWTHA V E+N+ CRE+FV LHSQPILE LS+++ Y F+ IN ++ K N++LK +P+KG FD+R VLDS YFFS Sbjct: 1192 ISGVCSQNVEWVTPLGLPVVQPYNRQEMKHSPRSGFKVSANMPMDLYERPNILKQKNAFPPNFIHSLDSSHMMLTSLHCERQGITFVSVHDCFWTHANTVPELNRMCREQFVALHSQPILEQLSEFMRHTYSFKDSDFINDGSVEDLSKRQLNRILKQMPQKGDFDLRNVLDSVYFFS 1369 HSP 2 Score: 71.2478 bits (173), Expect = 1.631e-57 Identity = 53/104 (50.96%), Postives = 68/104 (65.38%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVYS V +E RK DA+NG+ A L G + RKVIKQTVMTTVYGVT+YG LQI R+LK+++ P + + YL+ T S+ E+F S IQ+WF E Sbjct: 1084 QDVYSAVAALVEKSRKADAQNGLHVAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDIDDFPKDWVWPASTYLTTKTFESLREMFTSTREIQDWFTE 1187
BLAST of SMED30023981 vs. Ensembl Zebrafish
Match: polrmt (polymerase (RNA) mitochondrial (DNA directed) [Source:ZFIN;Acc:ZDB-GENE-030131-1528]) HSP 1 Score: 162.925 bits (411), Expect = 3.988e-51 Identity = 83/171 (48.54%), Postives = 104/171 (60.82%), Query Frame = -2 Query: 1561 NISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKI----AFNKLLKNIPKKGTFDIREVLDSTYFFS 2010 + W TP+ + QPY + ILK D +K KNAFPPNFIHSLDSTHMMLT+L C +TFVSVHDC+WTHA VD MN+ CRE+FV LHSQPILE LS +LL+KY + P +K+ K+L ++P+ G FD+ +V DS YFFS Sbjct: 1113 TVEWVTPLGLPIIQPYHRIRNQILKGNIQNLNIHISHDANEKPDSMKQKNAFPPNFIHSLDSTHMMLTSLHCHRAGLTFVSVHDCYWTHAVTVDIMNRVCREQFVALHSQPILEELSWFLLQKYSRR--PPVGSKPKKLLEYYTLMKVLSSVPQTGDFDLEKVKDSVYFFS 1281 HSP 2 Score: 60.077 bits (144), Expect = 3.988e-51 Identity = 47/104 (45.19%), Postives = 64/104 (61.54%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVYS V + +E R DA+ G++ A +L+G +SRKV+KQTVMT VYGVT+YGG LQI + LK ++ P + + YL S+ E+F IQ W E Sbjct: 999 QDVYSGVAKQVEEFRVRDAERGLKIAQVLQGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDDFPKDYVWDASHYLVVQVFNSLKEMFTGTREIQEWLTE 1102
BLAST of SMED30023981 vs. Ensembl Zebrafish
Match: kansl3 (KAT8 regulatory NSL complex subunit 3 [Source:NCBI gene;Acc:555951]) HSP 1 Score: 64.3142 bits (155), Expect = 4.514e-10 Identity = 67/327 (20.49%), Postives = 144/327 (44.04%), Query Frame = 2 Query: 518 QISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQL---------NIWAQNQKILHRFSWASLLEII-HREPEKLN---------EDLSEFSWNIENR---WK----------PIIIHIYSDRWSDSNRLQKFIKILKTFSTVVDFPFDDSGRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNF 1402 + ++++ + ++ W + + H LLE+LS L Y++ L+ + + KV +++D++ A+ +L + W + ++ H +P KL + ++ R W+ PI +H+ S + I + ++ G +R K ++ HK + ++GW++G+L+ + + Y T+V +CLG PL+ + G RG + +D + + L + G + + +++E+F++++ R D + +GG D LR++S ++Q +VDR I I +F Sbjct: 173 KCARKVRHALSSVSWDIKLTHWLHNTLLESLSLAMLAAYLDVLQTL--KSKVPSLIDRMLLSSSVKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIAPSGPTNPAFPTSRRMRFWQSQLSCLGKVIPINVHVGSG---------ANVGITQCLEHMI-------GTVRGKV----IEVHSHFPHKP--IILVGWNVGSLMAC--HVSLMEYMTAV----VCLGFPLQTISGPRGDV-DDPLLDMKTPVLFVVGQNALQCSPENMEEFREKI--RADNSLVVVGGADDSLRINSTKMKTEGLTQTMVDRCIQDEIVDF 466
BLAST of SMED30023981 vs. Ensembl Zebrafish
Match: kansl3 (KAT8 regulatory NSL complex subunit 3 [Source:NCBI gene;Acc:555951]) HSP 1 Score: 64.3142 bits (155), Expect = 5.128e-10 Identity = 67/327 (20.49%), Postives = 144/327 (44.04%), Query Frame = 2 Query: 518 QISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQL---------NIWAQNQKILHRFSWASLLEII-HREPEKLN---------EDLSEFSWNIENR---WK----------PIIIHIYSDRWSDSNRLQKFIKILKTFSTVVDFPFDDSGRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNF 1402 + ++++ + ++ W + + H LLE+LS L Y++ L+ + + KV +++D++ A+ +L + W + ++ H +P KL + ++ R W+ PI +H+ S + I + ++ G +R K ++ HK + ++GW++G+L+ + + Y T+V +CLG PL+ + G RG + +D + + L + G + + +++E+F++++ R D + +GG D LR++S ++Q +VDR I I +F Sbjct: 173 KCARKVRHALSSVSWDIKLTHWLHNTLLESLSLAMLAAYLDVLQTL--KSKVPSLIDRMLLSSSVKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIAPSGPTNPAFPTSRRMRFWQSQLSCLGKVIPINVHVGSG---------ANVGITQCLEHMI-------GTVRGKV----IEVHSHFPHKP--IILVGWNVGSLMAC--HVSLMEYMTAV----VCLGFPLQTISGPRGDV-DDPLLDMKTPVLFVVGQNALQCSPENMEEFREKI--RADNSLVVVGGADDSLRINSTKMKTEGLTQTMVDRCIQDEIVDF 466
BLAST of SMED30023981 vs. Ensembl Xenopus
Match: pacrg (parkin co-regulated [Source:Xenbase;Acc:XB-GENE-6258806]) HSP 1 Score: 165.622 bits (418), Expect = 3.931e-53 Identity = 84/172 (48.84%), Postives = 108/172 (62.79%), Query Frame = -2 Query: 1561 NISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKL-----LKNIPKKGTFDIREVLDSTYFFS 2010 + W+TP+ + QPY + +S D +K KNAFPPNFIHSLDSTHMMLTAL C+ +TFVSVHDCFWTH VD MNK CRE+FV LHSQPIL+NLS +LL+KY ++ +D K++ L N+P+ G FD+++V+DSTYFFS Sbjct: 1040 TVEWQTPLGLPIIQPYHRTKPVLFQSNLQVVNLQSSHDVNERPDTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLTFVSVHDCFWTHPDTVDVMNKVCREQFVALHSQPILQNLSQFLLQKYCQTLS---SDKMAKMSPENLRMTLHFSNVPETGNFDLKQVIDSTYFFS 1208 HSP 2 Score: 64.6994 bits (156), Expect = 3.931e-53 Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVYS V + +E RK DA+ GV+ A +L+G + RKV+KQTVMT VYGVT+YGG LQI + L+ L+ P + + + YL + S+ E+F+ IQ W E Sbjct: 926 QDVYSGVAQQVEEFRKRDAQRGVKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELDNFPKEYVWEASHYLVQQVFSSLKEMFSGTREIQLWLTE 1029
BLAST of SMED30023981 vs. Ensembl Xenopus
Match: pacrg (parkin co-regulated [Source:Xenbase;Acc:XB-GENE-6258806]) HSP 1 Score: 165.622 bits (418), Expect = 4.488e-53 Identity = 84/172 (48.84%), Postives = 108/172 (62.79%), Query Frame = -2 Query: 1561 NISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKL-----LKNIPKKGTFDIREVLDSTYFFS 2010 + W+TP+ + QPY + +S D +K KNAFPPNFIHSLDSTHMMLTAL C+ +TFVSVHDCFWTH VD MNK CRE+FV LHSQPIL+NLS +LL+KY ++ +D K++ L N+P+ G FD+++V+DSTYFFS Sbjct: 1059 TVEWQTPLGLPIIQPYHRTKPVLFQSNLQVVNLQSSHDVNERPDTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLTFVSVHDCFWTHPDTVDVMNKVCREQFVALHSQPILQNLSQFLLQKYCQTLS---SDKMAKMSPENLRMTLHFSNVPETGNFDLKQVIDSTYFFS 1227 HSP 2 Score: 64.3142 bits (155), Expect = 4.488e-53 Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVYS V + +E RK DA+ GV+ A +L+G + RKV+KQTVMT VYGVT+YGG LQI + L+ L+ P + + + YL + S+ E+F+ IQ W E Sbjct: 945 QDVYSGVAQQVEEFRKRDAQRGVKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELDNFPKEYVWEASHYLVQQVFSSLKEMFSGTREIQLWLTE 1048
BLAST of SMED30023981 vs. Ensembl Xenopus
Match: pacrg (parkin co-regulated [Source:Xenbase;Acc:XB-GENE-6258806]) HSP 1 Score: 153.68 bits (387), Expect = 1.773e-49 Identity = 81/165 (49.09%), Postives = 102/165 (61.82%), Query Frame = -2 Query: 1561 NISWKTPMNFIVKQPY--------------FADDSDI-LKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2010 + W+TP+ + QPY D+ + D +K KNAFPPNFIHSLDSTHMMLTAL C+ +TFVSVHDCFWTH VD MNK CRE+FV LHSQPIL+NLS +LL+KY ++ R + L + G FD+++V+DSTYFFS Sbjct: 1034 TVEWQTPLGLPIIQPYHRTKPVLSNLQVVNLQSSHDVNERPDTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLTFVSVHDCFWTHPDTVDVMNKVCREQFVALHSQPILQNLSQFLLQKYCQTLS-------RPMIILFLCFIV---GNFDLKQVIDSTYFFS 1188 HSP 2 Score: 64.6994 bits (156), Expect = 1.773e-49 Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVYS V + +E RK DA+ GV+ A +L+G + RKV+KQTVMT VYGVT+YGG LQI + L+ L+ P + + + YL + S+ E+F+ IQ W E Sbjct: 920 QDVYSGVAQQVEEFRKRDAQRGVKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELDNFPKEYVWEASHYLVQQVFSSLKEMFSGTREIQLWLTE 1023
BLAST of SMED30023981 vs. Ensembl Xenopus
Match: pacrg (parkin co-regulated [Source:Xenbase;Acc:XB-GENE-6258806]) HSP 1 Score: 152.525 bits (384), Expect = 2.890e-49 Identity = 79/163 (48.47%), Postives = 102/163 (62.58%), Query Frame = -2 Query: 1561 NISWKTPMNFIVKQPYFADD-------------SDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2010 + W+TP+ + QPY ++++ +K KNAFPPNFIHSLDSTHMMLTAL C+ +TFVSVHDCFWTH VD MNK CRE+FV LHSQPIL+NLS +LL+KY + + R + L + G FD+++V+DSTYFFS Sbjct: 1007 TVEWQTPLGLPIIQPYHRTKPVLVSYVLLHCMCGATMQNNTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLTFVSVHDCFWTHPDTVDVMNKVCREQFVALHSQPILQNLSQFLLQKYCQTL----STWSRPMIILFLCFIV---GNFDLKQVIDSTYFFS 1162 HSP 2 Score: 65.0846 bits (157), Expect = 2.890e-49 Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVYS V + +E RK DA+ GV+ A +L+G + RKV+KQTVMT VYGVT+YGG LQI + L+ L+ P + + + YL + S+ E+F+ IQ W E Sbjct: 893 QDVYSGVAQQVEEFRKRDAQRGVKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELDNFPKEYVWEASHYLVQQVFSSLKEMFSGTREIQLWLTE 996
BLAST of SMED30023981 vs. Ensembl Xenopus
Match: pacrg (parkin co-regulated [Source:Xenbase;Acc:XB-GENE-6258806]) HSP 1 Score: 144.436 bits (363), Expect = 9.969e-47 Identity = 68/124 (54.84%), Postives = 81/124 (65.32%), Query Frame = -2 Query: 1690 NISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKY 2010 + W+TP+ + QPY + +S D +K KNAFPPNFIHSLDSTHMMLTAL C+ +TFVSVHDCFWTH VD MNK CRE+FV LHSQPIL+NLS +LL+KY Sbjct: 1040 TVEWQTPLGLPIIQPYHRTKPVLFQSNLQVVNLQSSHDVNERPDTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLTFVSVHDCFWTHPDTVDVMNKVCREQFVALHSQPILQNLSQFLLQKY 1163 HSP 2 Score: 64.3142 bits (155), Expect = 9.969e-47 Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVYS V + +E RK DA+ GV+ A +L+G + RKV+KQTVMT VYGVT+YGG LQI + L+ L+ P + + + YL + S+ E+F+ IQ W E Sbjct: 926 QDVYSGVAQQVEEFRKRDAQRGVKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELDNFPKEYVWEASHYLVQQVFSSLKEMFSGTREIQLWLTE 1029
BLAST of SMED30023981 vs. Ensembl Mouse
Match: Polrmt (polymerase (RNA) mitochondrial (DNA directed) [Source:MGI Symbol;Acc:MGI:1915843]) HSP 1 Score: 160.614 bits (405), Expect = 2.401e-52 Identity = 77/169 (45.56%), Postives = 105/169 (62.13%), Query Frame = -2 Query: 1561 ISWKTPMNFIVKQPYFADDS-----------------DILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKL---LKNIPKKGTFDIREVLDSTYFFS 2007 + W TP+ + QPY + + K + LK KN FPPNFIHSLDS+HMMLTAL C+ K + FVSVHDCFWTHA D+ MN+ CRE+FV+LHSQPILE+L+ +L +++ + + + KL L+++PK GTFD+ +V+ STYFFS Sbjct: 1039 VEWVTPLGIPIIQPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSERALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 1207 HSP 2 Score: 66.6254 bits (161), Expect = 2.401e-52 Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVY +V +E R++DAK G+ A +LEG +SRKV+KQTVMT VYGVT+YGG LQI + L+ L P + + + YL + S+ E+F S IQ+W E Sbjct: 924 QDVYREVATQVEEFRQQDAKEGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTE 1027
BLAST of SMED30023981 vs. Ensembl Mouse
Match: Polrmt (polymerase (RNA) mitochondrial (DNA directed) [Source:MGI Symbol;Acc:MGI:1915843]) HSP 1 Score: 160.229 bits (404), Expect = 2.766e-52 Identity = 77/169 (45.56%), Postives = 105/169 (62.13%), Query Frame = -2 Query: 1561 ISWKTPMNFIVKQPYFADDS-----------------DILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKL---LKNIPKKGTFDIREVLDSTYFFS 2007 + W TP+ + QPY + + K + LK KN FPPNFIHSLDS+HMMLTAL C+ K + FVSVHDCFWTHA D+ MN+ CRE+FV+LHSQPILE+L+ +L +++ + + + KL L+++PK GTFD+ +V+ STYFFS Sbjct: 965 VEWVTPLGIPIIQPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSERALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 1133 HSP 2 Score: 66.6254 bits (161), Expect = 2.766e-52 Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVY +V +E R++DAK G+ A +LEG +SRKV+KQTVMT VYGVT+YGG LQI + L+ L P + + + YL + S+ E+F S IQ+W E Sbjct: 850 QDVYREVATQVEEFRQQDAKEGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTE 953
BLAST of SMED30023981 vs. Ensembl Mouse
Match: Polrmt (polymerase (RNA) mitochondrial (DNA directed) [Source:MGI Symbol;Acc:MGI:1915843]) HSP 1 Score: 158.688 bits (400), Expect = 4.507e-49 Identity = 77/169 (45.56%), Postives = 105/169 (62.13%), Query Frame = -2 Query: 1561 ISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKL---LKNIPKKGTFDIREVLDSTYFFS 2007 + W TP+ + QPY + +K + LK KN FPPNFIHSLDS+HMMLTAL C+ K + FVSVHDCFWTHA D+ MN+ CRE+FV+LHSQPILE+L+ +L +++ + + + KL L+++PK GTFD+ +V+ STYFFS Sbjct: 225 VEWVTPLGIPIIQPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSERALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 393 HSP 2 Score: 57.3806 bits (137), Expect = 4.507e-49 Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = -3 Query: 2091 LEHLEVK-----RKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2381 + HL V R++DAK G+ A +LEG +SRKV+KQTVMT VYGVT+YGG LQI + L+ L P + + + YL + S+ E+F S IQ+W E Sbjct: 112 ISHLPVHQVEEFRQQDAKEGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTE 213
BLAST of SMED30023981 vs. Ensembl Mouse
Match: Kansl3 (KAT8 regulatory NSL complex subunit 3 [Source:MGI Symbol;Acc:MGI:1918055]) HSP 1 Score: 68.9366 bits (167), Expect = 1.829e-11 Identity = 74/322 (22.98%), Postives = 144/322 (44.72%), Query Frame = 2 Query: 518 QISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQLNI---------WAQNQKILHRFSWASLLEII-HREPEKLNEDLSEFSWNIENRWKPIIIHIYSDRWS---DSNRLQKFIK-----ILKTFSTVVDFPFDDSGR-----LRKKFEALRNQLQLEL----KHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNF 1402 + ++R+ A+ W + H L+E LS L Y+++L+ + + K+ T++D++ + A+ +L + W + ++ H +P KL P+I+ + S S ++R +F + + K + SG L A+R+++ LE+ HK + ++GW+ GAL+ + + Y T+V +CLG PL + G RG + +D + + L + G S + + +EDF++++ R + + +GG D LR+S ++Q +VDR I I +F Sbjct: 173 KCARRVRQALASVSWDTKLTQWLHTTLVETLSLPMLAAYLDALQTL--KGKIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLP-------------GSPLILIVSSGPSSSVFPASRRHRFWQSQLSCLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKV-LEIHSHFPHKP--IILIGWNTGALVAC--HVSVMEYVTAV----VCLGFPLLTVDGPRGDV-DDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKI--RAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDF 467
BLAST of SMED30023981 vs. Ensembl Mouse
Match: Kansl3 (KAT8 regulatory NSL complex subunit 3 [Source:MGI Symbol;Acc:MGI:1918055]) HSP 1 Score: 68.5514 bits (166), Expect = 2.158e-11 Identity = 74/322 (22.98%), Postives = 144/322 (44.72%), Query Frame = 2 Query: 518 QISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQLNI---------WAQNQKILHRFSWASLLEII-HREPEKLNEDLSEFSWNIENRWKPIIIHIYSDRWS---DSNRLQKFIK-----ILKTFSTVVDFPFDDSGR-----LRKKFEALRNQLQLEL----KHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNF 1402 + ++R+ A+ W + H L+E LS L Y+++L+ + + K+ T++D++ + A+ +L + W + ++ H +P KL P+I+ + S S ++R +F + + K + SG L A+R+++ LE+ HK + ++GW+ GAL+ + + Y T+V +CLG PL + G RG + +D + + L + G S + + +EDF++++ R + + +GG D LR+S ++Q +VDR I I +F Sbjct: 74 KCARRVRQALASVSWDTKLTQWLHTTLVETLSLPMLAAYLDALQTL--KGKIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLP-------------GSPLILIVSSGPSSSVFPASRRHRFWQSQLSCLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKV-LEIHSHFPHKP--IILIGWNTGALVAC--HVSVMEYVTAV----VCLGFPLLTVDGPRGDV-DDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKI--RAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDF 368
BLAST of SMED30023981 vs. UniProt/SwissProt
Match: sp|Q8BKF1|RPOM_MOUSE (DNA-directed RNA polymerase, mitochondrial OS=Mus musculus OX=10090 GN=Polrmt PE=1 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 1.461e-51 Identity = 77/169 (45.56%), Postives = 105/169 (62.13%), Query Frame = -2 Query: 1561 ISWKTPMNFIVKQPYFADDS-----------------DILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKL---LKNIPKKGTFDIREVLDSTYFFS 2007 + W TP+ + QPY + + K + LK KN FPPNFIHSLDS+HMMLTAL C+ K + FVSVHDCFWTHA D+ MN+ CRE+FV+LHSQPILE+L+ +L +++ + + + KL L+++PK GTFD+ +V+ STYFFS Sbjct: 1039 VEWVTPLGIPIIQPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSERALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 1207 HSP 2 Score: 66.6254 bits (161), Expect = 1.461e-51 Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVY +V +E R++DAK G+ A +LEG +SRKV+KQTVMT VYGVT+YGG LQI + L+ L P + + + YL + S+ E+F S IQ+W E Sbjct: 924 QDVYREVATQVEEFRQQDAKEGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTE 1027
BLAST of SMED30023981 vs. UniProt/SwissProt
Match: sp|O00411|RPOM_HUMAN (DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens OX=9606 GN=POLRMT PE=1 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 7.914e-51 Identity = 79/167 (47.31%), Postives = 105/167 (62.87%), Query Frame = -2 Query: 1561 ISWKTPMNFIVKQPYFAD-----------------DSDI-LKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2007 + W TP+ V QPY D + DI K + K KN FPPNFIHSLDS+HMMLTAL C+ K +TFVSVHDC+WTHA DV MN+ CRE+FV+LHS+PIL++LS +L+++ F P + ++ + L+ +PK G FD+ +V STYFFS Sbjct: 1068 VEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKR--FCSEPQKILEASQL--KETLQAVPKPGAFDLEQVKRSTYFFS 1230 HSP 2 Score: 67.0106 bits (162), Expect = 7.914e-51 Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVYS V +EV R++DA+ G+ A +LEG ++RKV+KQTVMT VYGVT+YGG LQI + L+ L P + + + YL + S+ E+F+ IQ+W E Sbjct: 953 QDVYSGVAAQVEVFRRQDAQRGMRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTE 1056
BLAST of SMED30023981 vs. UniProt/SwissProt
Match: sp|O24600|RPOT3_ARATH (DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPOT3 PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.618e-35 Identity = 66/162 (40.74%), Postives = 91/162 (56.17%), Query Frame = -2 Query: 1564 ISWKTPMNFIVKQPYFADDSDILKS--------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFF 2007 + W TP+ V QPY + ++++ D K + AFPPNF+HSLD THMM+TA++C E + F VHD +WTHACDVD MN+ RE+FV+L++ PILE+L E Y N + +PK+G FD++EVL S YFF Sbjct: 847 VRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYP----------------NLVFPPVPKRGDFDLKEVLKSQYFF 992 HSP 2 Score: 35.039 bits (79), Expect = 1.618e-35 Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = -3 Query: 2097 DVYSDVLEHLEVKRKEDAKNGVEE------AILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAA-YLSKLTLGSIGEIFASATNIQNWF 2399 DVYS++ + K+D+ E A +L + RK++KQTVMT+VYGVT G QI R L+ + + + AA Y +K+TL ++GEIF +A I +W Sbjct: 726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWL 833
BLAST of SMED30023981 vs. UniProt/SwissProt
Match: sp|Q8L6J5|RPO1B_TOBAC (DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPOT1-TOM PE=2 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 1.862e-35 Identity = 70/162 (43.21%), Postives = 96/162 (59.26%), Query Frame = -2 Query: 1564 ISWKTPMNFIVKQPYFADDSDILKSD--------------CLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFF 2007 + W TP+ V QPY ++K+ + + AFPPNF+HSLD +HMM+TA++C E ++F VHD +WTHACDVD+MNK RE+FV+L+ PILEN LLE +Q Q P+ + F L P++G FD+REVL+S YFF Sbjct: 856 VRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAPILEN----LLESFQ-QSFPD-------LQFPPL----PERGDFDLREVLESPYFF 1001 HSP 2 Score: 36.5798 bits (83), Expect = 1.862e-35 Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = -3 Query: 2097 DVYSDVLEH-LEVKRKEDAKN-----GVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQN-IKSCAAYLSKLTLGSIGEIFASATNIQNWF 2399 DVYS + L++ +++ AK+ V A LL + RK++KQTVMT+VYGVT G QI + LK + N + + A Y +K TL ++GE+F +A +I +W Sbjct: 735 DVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWL 842
BLAST of SMED30023981 vs. UniProt/SwissProt
Match: sp|Q93Y94|RPOT1_NICSY (DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPOT1 PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 9.956e-35 Identity = 69/162 (42.59%), Postives = 95/162 (58.64%), Query Frame = -2 Query: 1564 ISWKTPMNFIVKQPYFADDSDILKSD--------------CLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFF 2007 + W TP+ V QPY ++K+ + + AFPPNF+HSLD +HMM+TA++C E ++F VHD +WTHA DVD+MNK RE+FV+L+ PILEN LLE +Q Q P+ + F L P++G FD+REVL+S YFF Sbjct: 856 VRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILEN----LLESFQ-QSFPD-------LQFPPL----PERGDFDLREVLESPYFF 1001 HSP 2 Score: 37.7354 bits (86), Expect = 9.956e-35 Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = -3 Query: 2097 DVYSDVLEH-LEVKRKEDAKN-----GVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQN-IKSCAAYLSKLTLGSIGEIFASATNIQNWF 2399 DVYS + L++ +++ AK+ V A LL + RK++KQTVMT+VYGVT G QI R LK + N + + A Y +K TL ++GE+F +A +I +W Sbjct: 735 DVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWL 842
BLAST of SMED30023981 vs. TrEMBL
Match: A0A034WBI1 (DNA-directed RNA polymerase (Fragment) OS=Bactrocera dorsalis OX=27457 GN=RPOM PE=3 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 7.922e-59 Identity = 90/178 (50.56%), Postives = 114/178 (64.04%), Query Frame = -2 Query: 1561 ISRLRKANISWKTPMNFIVKQPYFADD-----------SDIL------KSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQ----INPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2031 IS + N+ W TP+ V QPY + S+ + K + +K KNAFPPNFIHSLDS+HMMLT+L C +K +TFVSVHDCFWTHAC V EMN+ CRE+FV LHSQPILE+LS ++ KY F+ +N D+ K N+ L +PKKG FD+R VL+S YFFS Sbjct: 647 ISGVCGQNVEWVTPLGLPVVQPYIRQEVKQTMRTAARVSETMAMDMYEKPNVMKQKNAFPPNFIHSLDSSHMMLTSLYCEQKGLTFVSVHDCFWTHACTVPEMNQICREQFVSLHSQPILEDLSAFMRSKYSFRECDLLNDGSADDLSKRRLNRTLGEMPKKGDFDLRNVLNSVYFFS 824 HSP 2 Score: 80.4925 bits (197), Expect = 7.922e-59 Identity = 56/105 (53.33%), Postives = 70/105 (66.67%), Query Frame = -3 Query: 2088 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIEV 2402 QDVYS V +E RK DA NGV+ A LEG + RKVIKQTVMTTVYGVT+YG LQI R+LK++E P + + + YL+ T S+ E+F S IQ+WF E Sbjct: 539 QDVYSAVAALVEKSRKSDASNGVQVAQALEGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDIESFPKEWVWPASTYLTSKTFESLREMFTSTREIQDWFTEC 643
BLAST of SMED30023981 vs. TrEMBL
Match: A0A1A9UTY2 (DNA-directed RNA polymerase OS=Glossina austeni OX=7395 PE=3 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 1.434e-58 Identity = 90/173 (52.02%), Postives = 113/173 (65.32%), Query Frame = -2 Query: 1561 ISRLRKANISWKTPMNFIVKQPYFADDSDIL------------KSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQ----INPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2031 IS + N+ W TP+ V QPY D I + + +K KNAFPPNFIHSLDS+HMMLT+L C + +TFVSVHDCFWTHAC V E+NK CRE+FV LHSQPILE+LS+YL + Y F+ N ++G K N++L IPKKG FD++ VL+S YFFS Sbjct: 1192 ISGVCGKNVEWITPLGLPVVQPYNRQDKQISSRIFNASTDMYERPNVMKQKNAFPPNFIHSLDSSHMMLTSLHCEREGLTFVSVHDCFWTHACTVPELNKICREQFVSLHSQPILEDLSEYLKKTYSFKPSDFANDGSAEDGSKRRSNRILGQIPKKGDFDLQSVLNSVYFFS 1364 HSP 2 Score: 76.2554 bits (186), Expect = 1.434e-58 Identity = 54/108 (50.00%), Postives = 74/108 (68.52%), Query Frame = -3 Query: 2079 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIEVLIV 2402 QDVYS V+ +E RKEDAK G++ A +L+G + RKVIKQTVMTTVYGVT++G LQI R+LK+++ P + ++YL+ T S+ E+F S IQ+WF E V Sbjct: 1084 QDVYSGVVVLVEKARKEDAKAGLQIAEVLKGFIKRKVIKQTVMTTVYGVTRHGARLQIARQLKDIDDFPNDWVWPASSYLTTKTFLSLREMFTSTREIQDWFTECARV 1191
BLAST of SMED30023981 vs. TrEMBL
Match: A0A0K8VPA8 (DNA-directed RNA polymerase OS=Bactrocera latifrons OX=174628 GN=Polrmt_2 PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.627e-58 Identity = 91/178 (51.12%), Postives = 115/178 (64.61%), Query Frame = -2 Query: 1561 ISRLRKANISWKTPMNFIVKQPY-----------FADDSDIL------KSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQ----INPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2031 IS + N+ W TP+ V QPY A S+ + K + +K KNAFPPNFIHSLDS+HMMLT+L C +K++TFVSVHDCFWTHAC V EMN+ CRE+FV LHSQPILE+LS ++ KY F+ +N D+ K N+ L+ +PKKG FD+R VL S YFFS Sbjct: 290 ISGVCGQNVEWVTPLGLPVVQPYNRQEVKQTMRTAARVSETMAMDMYEKPNVMKQKNAFPPNFIHSLDSSHMMLTSLYCEQKDVTFVSVHDCFWTHACTVSEMNQICREQFVSLHSQPILEDLSAFMRSKYSFRECDLLNDGSADDLSKRRLNRTLREMPKKGDFDLRNVLKSVYFFS 467 HSP 2 Score: 78.5666 bits (192), Expect = 2.627e-58 Identity = 55/105 (52.38%), Postives = 69/105 (65.71%), Query Frame = -3 Query: 2088 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIEV 2402 QDVYS V +E RK DA GV+ A LEG + RKVIKQTVMTTVYGVT+YG LQI R+LK++E P + + + YL+ T S+ E+F S IQ+WF E Sbjct: 182 QDVYSAVAALVEKSRKSDASKGVQVAQALEGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDIESFPKEWVWPASTYLTSKTFESLREMFTSTREIQDWFTEC 286
BLAST of SMED30023981 vs. TrEMBL
Match: A0A0P5SZN7 (DNA-directed RNA polymerase OS=Daphnia magna OX=35525 GN=APZ42_013396 PE=3 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 5.778e-58 Identity = 82/162 (50.62%), Postives = 113/162 (69.75%), Query Frame = -2 Query: 1561 ISRLRKANISWKTPMNFIVKQPYFADDSD-ILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQ---INPNENDNG-RKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2031 IS + N+ W TP+ V QPY + D + + +K +NAFPPNFIHSLDS+HMMLTAL C K ITF S+HDCFWTH C V+EMNK CR++FV LHSQPILE+LS +++ ++ + I +E+ G + N++L+ +P++G FD+R VL+S YFFS Sbjct: 1023 ISTVAGENVEWITPVGLPVVQPYNKNPYDETSRPNVMKQRNAFPPNFIHSLDSSHMMLTALHCQRKGITFASIHDCFWTHPCTVNEMNKICRQQFVSLHSQPILEDLSKFMVSQFASRASDIAEDESPKGLARHRLNQILREVPRRGVFDLRLVLESVYFFS 1184 HSP 2 Score: 78.9518 bits (193), Expect = 5.778e-58 Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVYS+V +E +R +DA N VE A LL G +SRKVIKQTVMTTVYGVT+YG LQI ++LK L L P+ + A+YL+ T S+ E+F SA IQ+WF E Sbjct: 915 QDVYSNVATLVERERAKDAANDVEIAQLLAGQISRKVIKQTVMTTVYGVTRYGARLQIAKQLKELPGLSPEQVNIGASYLADKTFQSLQEMFTSAKEIQDWFTE 1018
BLAST of SMED30023981 vs. TrEMBL
Match: A0A0A1X790 (DNA-directed RNA polymerase OS=Zeugodacus cucurbitae OX=28588 GN=POLRMT PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 6.067e-58 Identity = 90/178 (50.56%), Postives = 115/178 (64.61%), Query Frame = -2 Query: 1561 ISRLRKANISWKTPMNFIVKQPY-----------FADDSDIL------KSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQ----INPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2031 IS + N+ W TP+ V QPY A S+ + K + +K KNAFPPNFIHSLDS+HMMLT+L C +K +TFVSVHDCFWTHAC V +MN+ CRE+FV LHSQPILE+LS ++ KY FQ +N D+ K N++L +P+KG FD+R VL+S YFFS Sbjct: 1180 ISGVCGQNVEWVTPLGLPVVQPYNRSEVKHTMRTGARVSETMAMDMYEKPNVMKQKNAFPPNFIHSLDSSHMMLTSLYCEQKGLTFVSVHDCFWTHACSVPDMNQICREQFVSLHSQPILEDLSTFMRSKYTFQESDMLNDGSADDLSKRRLNRILGEMPRKGKFDLRNVLNSVYFFS 1357 HSP 2 Score: 77.411 bits (189), Expect = 6.067e-58 Identity = 55/105 (52.38%), Postives = 70/105 (66.67%), Query Frame = -3 Query: 2088 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIEV 2402 QDVYS V +E RK +A NGV+ A LEG + RKVIKQTVMTTVYGVT+YG LQI R+LK++E P + + + YL+ T S+ E+F S IQ+WF E Sbjct: 1072 QDVYSAVAALVEKSRKSEALNGVQVAQALEGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDIESFPKEWVWPASTYLTSKTFESLREMFTSTREIQDWFTEC 1176
BLAST of SMED30023981 vs. Ensembl Cavefish
Match: polrmt (RNA polymerase mitochondrial [Source:NCBI gene;Acc:103025872]) HSP 1 Score: 169.859 bits (429), Expect = 2.387e-56 Identity = 85/171 (49.71%), Postives = 107/171 (62.57%), Query Frame = -2 Query: 1561 ANISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNK---LLKNIPKKGTFDIREVLDSTYFFS 2013 + + W TP+ + QPY S +++S D +K KNAFPPNFIHSLDSTHMMLTAL C+ +TFVSVHDCFWTH VD MNK CRE+FV LH+QPIL+NLS++LL+KY N + FN+ LL +P+ G FD++ V DSTYFFS Sbjct: 1036 STVEWVTPLGLPIVQPYHRSRSQLVRSNIQMLNVQISYDVHEKPDTMKQKNAFPPNFIHSLDSTHMMLTALYCYSAGVTFVSVHDCFWTHPITVDTMNKVCREQFVSLHNQPILQNLSEFLLQKYCS--GSVGKTNKAFLEFNRMQQLLARVPETGDFDLQRVKDSTYFFS 1204 HSP 2 Score: 70.4774 bits (171), Expect = 2.387e-56 Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVYS V + +E RK DA G++ AI+LEG ++RKV+KQTVMT VYGVT+YGG LQI + LK ++ P + + + YL + S+ E+F IQNW E Sbjct: 923 QDVYSGVAQQVEEFRKRDAAKGLKTAIVLEGFINRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDDFPKEYLWDASHYLVQQVFSSLKEMFTGTREIQNWLTE 1026
BLAST of SMED30023981 vs. Ensembl Cavefish
Match: polrmt (RNA polymerase mitochondrial [Source:NCBI gene;Acc:103025872]) HSP 1 Score: 169.474 bits (428), Expect = 3.551e-56 Identity = 85/171 (49.71%), Postives = 107/171 (62.57%), Query Frame = -2 Query: 1561 ANISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNK---LLKNIPKKGTFDIREVLDSTYFFS 2013 + + W TP+ + QPY S +++S D +K KNAFPPNFIHSLDSTHMMLTAL C+ +TFVSVHDCFWTH VD MNK CRE+FV LH+QPIL+NLS++LL+KY N + FN+ LL +P+ G FD++ V DSTYFFS Sbjct: 1116 STVEWVTPLGLPIVQPYHRSRSQLVRSNIQMLNVQISYDVHEKPDTMKQKNAFPPNFIHSLDSTHMMLTALYCYSAGVTFVSVHDCFWTHPITVDTMNKVCREQFVSLHNQPILQNLSEFLLQKYCS--GSVGKTNKAFLEFNRMQQLLARVPETGDFDLQRVKDSTYFFS 1284 HSP 2 Score: 70.0922 bits (170), Expect = 3.551e-56 Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVYS V + +E RK DA G++ AI+LEG ++RKV+KQTVMT VYGVT+YGG LQI + LK ++ P + + + YL + S+ E+F IQNW E Sbjct: 1003 QDVYSGVAQQVEEFRKRDAAKGLKTAIVLEGFINRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDDFPKEYLWDASHYLVQQVFSSLKEMFTGTREIQNWLTE 1106
BLAST of SMED30023981 vs. Ensembl Cavefish
Match: kansl3 (KAT8 regulatory NSL complex subunit 3 [Source:NCBI gene;Acc:103024162]) HSP 1 Score: 66.6254 bits (161), Expect = 8.402e-11 Identity = 69/318 (21.70%), Postives = 140/318 (44.03%), Query Frame = 2 Query: 518 QISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQLNIWAQNQKILHRFSWASLLEIIHREPEKLNEDLSEFSWNIENRWK--PIIIHIYS----DRWSDSNRLQKFIKILKTFSTVVDFPFDDS-----------------GRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNF 1402 + + ++ + A+ +W + H+ ++E+LS L Y++ L+ + + KV +++D++ Q+ S + L ++ + P + + S N ++ P+I+ S S S R++ + L V+ P + G +R K ++ L HK + ++GW++GAL I H V+CLG PL+ + G RG + + + + T ++ + G +++E+F++++ R D + +GG D LR+SS ++Q +VDR I I +F Sbjct: 173 KCAHKVRHALASVNWDTKLTQWLHSTMVESLSLTLLAAYLDVLQTL--KSKVPSLIDRM---LQSSSSKTGASGSEALSLLLKRP--WDPAVGVLSQNKPSKLPGSPLILICPSAPTLPSVSTSRRMRFWQSQLSCLGKVI--PINTHVGNGSNLGITQCLEHMVGTVRGKV----IEVHSHLPHKP--IILVGWNVGAL------IACHVSLMEYVTAVVCLGFPLQTVSGPRGDVDDPLLDMKTPVLFVVGQNALQCGM-ENMEEFREKI--RADNSMVVVGGADDNLRISSSKMKTEGLTQTMVDRCIQDEIVDF 466
BLAST of SMED30023981 vs. Ensembl Cavefish
Match: kansl3 (KAT8 regulatory NSL complex subunit 3 [Source:NCBI gene;Acc:103024162]) HSP 1 Score: 66.2402 bits (160), Expect = 1.129e-10 Identity = 69/318 (21.70%), Postives = 140/318 (44.03%), Query Frame = 2 Query: 518 QISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQLNIWAQNQKILHRFSWASLLEIIHREPEKLNEDLSEFSWNIENRWK--PIIIHIYS----DRWSDSNRLQKFIKILKTFSTVVDFPFDDS-----------------GRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNF 1402 + + ++ + A+ +W + H+ ++E+LS L Y++ L+ + + KV +++D++ Q+ S + L ++ + P + + S N ++ P+I+ S S S R++ + L V+ P + G +R K ++ L HK + ++GW++GAL I H V+CLG PL+ + G RG + + + + T ++ + G +++E+F++++ R D + +GG D LR+SS ++Q +VDR I I +F Sbjct: 173 KCAHKVRHALASVNWDTKLTQWLHSTMVESLSLTLLAAYLDVLQTL--KSKVPSLIDRM---LQSSSSKTGASGSEALSLLLKRP--WDPAVGVLSQNKPSKLPGSPLILICPSAPTLPSVSTSRRMRFWQSQLSCLGKVI--PINTHVGNGSNLGITQCLEHMVGTVRGKV----IEVHSHLPHKP--IILVGWNVGAL------IACHVSLMEYVTAVVCLGFPLQTVSGPRGDVDDPLLDMKTPVLFVVGQNALQCGM-ENMEEFREKI--RADNSMVVVGGADDNLRISSSKMKTEGLTQTMVDRCIQDEIVDF 466
BLAST of SMED30023981 vs. Ensembl Cavefish
Match: kansl3 (KAT8 regulatory NSL complex subunit 3 [Source:NCBI gene;Acc:103024162]) HSP 1 Score: 65.855 bits (159), Expect = 1.452e-10 Identity = 69/318 (21.70%), Postives = 140/318 (44.03%), Query Frame = 2 Query: 518 QISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQLNIWAQNQKILHRFSWASLLEIIHREPEKLNEDLSEFSWNIENRWK--PIIIHIYS----DRWSDSNRLQKFIKILKTFSTVVDFPFDDS-----------------GRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNF 1402 + + ++ + A+ +W + H+ ++E+LS L Y++ L+ + + KV +++D++ Q+ S + L ++ + P + + S N ++ P+I+ S S S R++ + L V+ P + G +R K ++ L HK + ++GW++GAL I H V+CLG PL+ + G RG + + + + T ++ + G +++E+F++++ R D + +GG D LR+SS ++Q +VDR I I +F Sbjct: 173 KCAHKVRHALASVNWDTKLTQWLHSTMVESLSLTLLAAYLDVLQTL--KSKVPSLIDRM---LQSSSSKTGASGSEALSLLLKRP--WDPAVGVLSQNKPSKLPGSPLILICPSAPTLPSVSTSRRMRFWQSQLSCLGKVI--PINTHVGNGSNLGITQCLEHMVGTVRGKV----IEVHSHLPHKP--IILVGWNVGAL------IACHVSLMEYVTAVVCLGFPLQTVSGPRGDVDDPLLDMKTPVLFVVGQNALQCGM-ENMEEFREKI--RADNSMVVVGGADDNLRISSSKMKTEGLTQTMVDRCIQDEIVDF 466
BLAST of SMED30023981 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005603.1 (pep scaffold:Pmarinus_7.0:GL476532:352361:404828:1 gene:ENSPMAG00000005070.1 transcript:ENSPMAT00000005603.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 70.4774 bits (171), Expect = 2.693e-13 Identity = 49/104 (47.12%), Postives = 68/104 (65.38%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVY+ V + ++V R EDAKN V+ A +L G + RK++KQTVMT VYGVT+YGG QI + L ++ P + + +AYL+KL S+ E+F IQNW E Sbjct: 746 QDVYASVAQQVDVFRAEDAKNDVKIAQVLGGFIGRKLVKQTVMTVVYGVTRYGGRQQIEKRLSEMDDFPKEYVWDASAYLTKLVFSSLREMFTGTREIQNWLTE 849 HSP 2 Score: 22.3274 bits (46), Expect = 2.693e-13 Identity = 6/16 (37.50%), Postives = 10/16 (62.50%), Query Frame = -2 Query: 1963 NISWKTPMNFIVKQPY 2010 ++ W TP+ + QPY Sbjct: 860 SVEWVTPLGLPIIQPY 875
BLAST of SMED30023981 vs. Ensembl Sea Lamprey
Match: kansl3 (KAT8 regulatory NSL complex subunit 3 [Source:NCBI gene;Acc:555951]) HSP 1 Score: 65.855 bits (159), Expect = 1.224e-11 Identity = 78/352 (22.16%), Postives = 155/352 (44.03%), Query Frame = 2 Query: 389 WTISDTNMKTRLLFILEEGYGSLIVLPTINENLDLINFNNSFRQISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQLNIWAQNQKILHRFSWASLLEIIHREP-EKLNEDLSEFSWNIENRWKPIIIHIYSDR---------------W-SDSNRLQKFIKI-LKTFSTVVDFPFDDSGRLRKKFEALRNQ---LQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLI 1381 W+IS + T+++ L+ + + ++ + + + + + R+ A+ W + HA L+++LS L Y++ L+ + R KV +++D++ I K + A L ++ + P + LS++ ++ P+++ S W S + L K + + + T S F L A+R + LQL+ V ++GW++GAL + H V+CLG PL +GERG + +D + L TL + G S+L + +++F++R++ + + +GG D LR++ ++Q +VDR I Sbjct: 62 WSISQNKLFTKVVKALQADRLTRLAYQAVSG--EAVLRRAAVDRCASRVRAALASCGWEPRLTQWLHATLIDSLSVAALSSYLDVLQTL--RSKVPSLVDRM-IAPSTTK--SEATSAEALSLLLKRPWDPAVGLLSQYK-PVKLLGAPLLLVAPSGPTASTAAAAASRRLRFWNSQLSCLGKVVPVTMHTTSGGAGFSVGQC--LEHMVGAVRTKVVCLQLQHHFPNRPVVLIGWNVGAL------VACHVSLMESVSAVVCLGFPLFTTEGERGDV-DDPLLELRVPTLFVIGQRSTLSSPAAMDEFRERLRAHSGL--VIVGGADSSLRMNKTKRRLEGLTQSMVDRCI 394
BLAST of SMED30023981 vs. Ensembl Yeast
Match: RPO41 (Mitochondrial RNA polymerase; single subunit enzyme similar to those of T3 and T7 bacteriophages; requires a specificity subunit encoded by MTF1 for promoter recognition; Mtf1p interacts with and stabilizes the Rpo41p-promoter complex, enhancing DNA bending and melting to facilitate pre-initiation open complex formation; Rpo41p also synthesizes RNA primers for mitochondrial DNA replication [Source:SGD;Acc:S000001858]) HSP 1 Score: 98.2117 bits (243), Expect = 8.150e-27 Identity = 42/125 (33.60%), Postives = 70/125 (56.00%), Query Frame = -2 Query: 1687 ANISWKTPMNFIVKQPYFADDSDILKSD----------------CLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQ 2013 +++ W TP+ + QPY + ++++ + K PPNFIHSLD++HM+L+A C ++ + F SVHD +WTHA D+D MN RE+F+KLH ++ L + ++Y+ Sbjct: 1106 SSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNARRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASVHDSYWTHASDIDTMNVVLREQFIKLHEVDLVLRLKEEFDQRYK 1230 HSP 2 Score: 40.0466 bits (92), Expect = 8.150e-27 Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVY+ V ++ + + A+ G E A +L+ ++RKV+KQTVMT VYGVT G T QI ++L + +++ + YL+K +I E+F SA IQ+W E Sbjct: 976 QDVYAHVARLVQKRLEIAAEKGDENAKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSPIFDDRKESL-DFSKYLTKHVFSAIRELFHSAHLIQDWLGE 1078
BLAST of SMED30023981 vs. Ensembl Nematostella
Match: EDO47752 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKW2]) HSP 1 Score: 140.969 bits (354), Expect = 1.234e-40 Identity = 72/167 (43.11%), Postives = 96/167 (57.49%), Query Frame = -2 Query: 1564 ISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQ--INPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFF 2007 + W TP++ V QPY +K+ D K + AFPPNF+HSLDSTHMMLTA+ C I F SVHD FWTHA +D MN+ CRE+FV LH+QPIL++L + ++ Y + P + + I N + +P+ G FD+ EVLDSTYFF Sbjct: 520 VDWYTPLSLYVCQPYCKKAVKTIKTRLQGIEIPTQGFAMSVPDSRKQRAAFPPNFVHSLDSTHMMLTAVHCQRAGINFASVHDSFWTHAAHIDIMNRLCREQFVSLHTQPILQDLQTHFVDNYGGLKFMRPLKKKDHAPI-HNATFEGLPEIGDFDVSEVLDSTYFF 685 HSP 2 Score: 45.0542 bits (105), Expect = 1.234e-40 Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = -3 Query: 2097 GVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWF 2339 G A LLE ++R+V+KQTVMT VYGVT GG LQI R+LK+L+ L + + +AYL SIG++F A IQ+WF Sbjct: 427 GHRIATLLEDKVTRRVVKQTVMTIVYGVTFVGGRLQIERQLKDLD-LDERVLFEASAYLVHKVFASIGQMFTRAKAIQDWF 506
BLAST of SMED30023981 vs. Ensembl Nematostella
Match: EDO28665 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7T5U5]) HSP 1 Score: 120.939 bits (302), Expect = 2.991e-39 Identity = 56/123 (45.53%), Postives = 73/123 (59.35%), Query Frame = -2 Query: 1690 ISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKY 2007 + W TP++ V QPY +K+ D K + AFPPNF+HSLDSTHMMLTA+ C I F SVHD FWTHA +D MN+ CRE+FV LH+QPIL++L + ++ Y Sbjct: 291 VDWYTPLSLYVCQPYCKKAVKTIKTRLQGIEIPTQGFAMSVPDSRKQRAAFPPNFVHSLDSTHMMLTAVHCQRAGINFASVHDSFWTHAAHIDIMNRLCREQFVSLHTQPILQDLQAHFVDNY 413 HSP 2 Score: 60.4622 bits (145), Expect = 2.991e-39 Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = -3 Query: 2097 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWF 2402 QDVY++V + +E R DA+ G A LLE ++R+V+KQTVMT VYGVT GG LQI R+LK+L+ L + + +AYL SIG++F A IQ+WF Sbjct: 177 QDVYAEVAKLVEEARLHDAEQGHRIATLLEDKVTRRVVKQTVMTIVYGVTFVGGRLQIERQLKDLD-LDERVLFEASAYLVHKVFASIGQMFTRAKAIQDWF 277
BLAST of SMED30023981 vs. Ensembl Nematostella
Match: EDO41702 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7S3D0]) HSP 1 Score: 60.077 bits (144), Expect = 1.793e-19 Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = -3 Query: 2097 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWF 2402 QDVY++V + +E R DA+ G A LLE ++R+V+KQTVMT VYGVT GG LQI R+LK+L+ L + + +AYL SIG++F A IQ+WF Sbjct: 313 QDVYAEVAKLVEEARLHDAEQGHRIATLLEDKVTRRVVKQTVMTIVYGVTFVGGRLQIERQLKDLD-LDERVLFEASAYLVHKVFASIGQMFTRAKAIQDWF 413 HSP 2 Score: 54.6842 bits (130), Expect = 1.793e-19 Identity = 28/69 (40.58%), Postives = 36/69 (52.17%), Query Frame = -2 Query: 1852 ISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTAL 2007 + W TP++ V QPY +K+ D K + AFPPNF+HSLDSTHMMLTA+ Sbjct: 427 VDWYTPLSLYVCQPYCKKAVKTIKTRLQGIEIPTQGFAMSVPDSRKQRAAFPPNFVHSLDSTHMMLTAV 495
BLAST of SMED30023981 vs. Ensembl Nematostella
Match: EDO37729 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SEX0]) HSP 1 Score: 80.1073 bits (196), Expect = 2.883e-16 Identity = 53/167 (31.74%), Postives = 80/167 (47.90%), Query Frame = 2 Query: 944 GRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNFAIDQVLHSYYKREE 1444 G +R K LR+ + ++GW +GAL + C V+CLG PL GL G RG I ED + L TL + G S L +DIE+ ++R+K + + +GG D LRL+ + ++Q++VDRLI I F + VL S ++ Sbjct: 147 GAVRTKVLELRSHF------PNRPIVLIGWSIGAL------VSCQVALMESVCAVVCLGFPLTGLDGVRGDI-EDPLLELKAPTLFVIGSNSCLNTQEDIEEVRERIKAETSL--LVVGGADEQLRLTRAKKKQEGLTQNMVDRLIMDQIGEF-LGNVLTSVNNNQQ 297
BLAST of SMED30023981 vs. Ensembl Medaka
Match: polrmt (RNA polymerase mitochondrial [Source:NCBI gene;Acc:101162744]) HSP 1 Score: 171.785 bits (434), Expect = 2.730e-57 Identity = 86/171 (50.29%), Postives = 107/171 (62.57%), Query Frame = -2 Query: 1561 NISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKY-QFQINPNENDNGRKIAFNK---LLKNIPKKGTFDIREVLDSTYFFS 2010 + W TP+ + QPY + +LKS D +K KNAFPPNFIHSLDSTHMMLTAL C+ +TFVSVHDCFWTHA VD MNK CRE+FV LHSQPIL+ LSD+LL KY P E + + + + LL +P+ G FD+++V +STYFFS Sbjct: 1178 TVEWVTPLGLPIIQPYHRTRNQVLKSSIQHINLQISHDSKERPDTVKQKNAFPPNFIHSLDSTHMMLTALHCYSAGLTFVSVHDCFWTHALTVDTMNKVCREQFVALHSQPILQELSDFLLHKYCSGSGLPAEAKSKKYQEYRRLMLLLTKVPQTGDFDLQQVKESTYFFS 1348 HSP 2 Score: 71.633 bits (174), Expect = 2.730e-57 Identity = 50/104 (48.08%), Postives = 69/104 (66.35%), Query Frame = -3 Query: 2091 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE 2402 QDVYS V + +E R DA++G++ A +LEG +SRKV+KQTVMT VYGVT+YGG LQI + LK +E P ++I + YL +L + E+F IQ+W E Sbjct: 1064 QDVYSGVAQQVEELRARDARDGLKIAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIENFPKEHIWDASHYLVRLVFNGLKEMFTGTREIQDWLTE 1167
BLAST of SMED30023981 vs. Ensembl Medaka
Match: kansl3 (KAT8 regulatory NSL complex subunit 3 [Source:NCBI gene;Acc:101169863]) HSP 1 Score: 64.3142 bits (155), Expect = 3.952e-10 Identity = 67/312 (21.47%), Postives = 136/312 (43.59%), Query Frame = 2 Query: 518 QISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQLNIW--------AQNQKILHRFSWASLLEIIHR-EPEKL-NEDLSEFSWNIENRWKPIIIHIYSDRW--SDSNRLQKFIKILKTFSTVVDFPFDDS-----GRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNF 1402 + ++++ A+ +W + H L+E+LS L Y++ L+ + + K+ +++D++ + A+ +L + W + ++ + +P KL L + + + P + R+ S + L K I + ++ G +R K ++ HK + ++GW+ GAL I H V+CLG PL + G RG + + + + T +I G + N + +E+F++++ R D + +GG D LR++S ++Q +VDR I I +F Sbjct: 171 KCARKVRQALASMNWDTKLTQWLHTTLIESLSLPMLAAYLDVLQTL--KTKLPSLIDRMLLPTAKTGAPSAEALSLLLKRPWDPAVGVLSQNKPSKLPGSPLILIAPSTPS--NPALATTRRMRFWQSQLSCLGKVIPVHTHVNSGASISITQCLEHMLGTVRAKVM----EVHSHFPHKP--IVLVGWNAGAL------IACHVSLMEYLTAVVCLGFPLITVNGLRGDVDDPLLDMKTPVLFVI-GQHALQCNAESMEEFREKL--RADNSMVVVGGADDNLRINSAKMKSEGLTQTIVDRCIQDEIADF 463
BLAST of SMED30023981 vs. Ensembl Medaka
Match: kansl3 (KAT8 regulatory NSL complex subunit 3 [Source:NCBI gene;Acc:101169863]) HSP 1 Score: 63.929 bits (154), Expect = 5.491e-10 Identity = 67/312 (21.47%), Postives = 135/312 (43.27%), Query Frame = 2 Query: 518 QISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQL--------NIWAQNQKILHRFSWASLLEIIHR-EPEKL-NEDLSEFSWNIENRWKPIIIHIYSDRW--SDSNRLQKFIKILKTFSTVVDFPFDDS-----GRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNF 1402 + ++++ A+ +W + H L+E+LS L Y++ L+ + + K+ +++D++ A+ +L + W + ++ + +P KL L + + + P + R+ S + L K I + ++ G +R K ++ HK + ++GW+ GAL I H V+CLG PL + G RG + + + + T +I G + N + +E+F++++ R D + +GG D LR++S ++Q +VDR I I +F Sbjct: 171 KCARKVRQALASMNWDTKLTQWLHTTLIESLSLPMLAAYLDVLQTL--KTKLPSLIDRMLLPTAKTGAPSAEALSLLLKRPWDPAVGVLSQNKPSKLPGSPLILIAPSTPS--NPALATTRRMRFWQSQLSCLGKVIPVHTHVNSGASISITQCLEHMLGTVRAKV----MEVHSHFPHKP--IVLVGWNAGAL------IACHVSLMEYLTAVVCLGFPLITVNGLRGDVDDPLLDMKTPVLFVI-GQHALQCNAESMEEFREKL--RADNSMVVVGGADDNLRINSAKMKSEGLTQTIVDRCIQDEIADF 463
BLAST of SMED30023981 vs. Ensembl Medaka
Match: kansl3 (KAT8 regulatory NSL complex subunit 3 [Source:NCBI gene;Acc:101169863]) HSP 1 Score: 63.929 bits (154), Expect = 5.548e-10 Identity = 67/312 (21.47%), Postives = 135/312 (43.27%), Query Frame = 2 Query: 518 QISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQL--------NIWAQNQKILHRFSWASLLEIIHR-EPEKL-NEDLSEFSWNIENRWKPIIIHIYSDRW--SDSNRLQKFIKILKTFSTVVDFPFDDS-----GRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNF 1402 + ++++ A+ +W + H L+E+LS L Y++ L+ + + K+ +++D++ A+ +L + W + ++ + +P KL L + + + P + R+ S + L K I + ++ G +R K ++ HK + ++GW+ GAL I H V+CLG PL + G RG + + + + T +I G + N + +E+F++++ R D + +GG D LR++S ++Q +VDR I I +F Sbjct: 171 KCARKVRQALASMNWDTKLTQWLHTTLIESLSLPMLAAYLDVLQTL--KTKLPSLIDRMLLPTAKTGAPSAEALSLLLKRPWDPAVGVLSQNKPSKLPGSPLILIAPSTPS--NPALATTRRMRFWQSQLSCLGKVIPVHTHVNSGASISITQCLEHMLGTVRAKV----MEVHSHFPHKP--IVLVGWNAGAL------IACHVSLMEYLTAVVCLGFPLITVNGLRGDVDDPLLDMKTPVLFVI-GQHALQCNAESMEEFREKL--RADNSMVVVGGADDNLRINSAKMKSEGLTQTIVDRCIQDEIADF 463
BLAST of SMED30023981 vs. Ensembl Medaka
Match: kansl3 (KAT8 regulatory NSL complex subunit 3 [Source:NCBI gene;Acc:101169863]) HSP 1 Score: 63.5438 bits (153), Expect = 6.633e-10 Identity = 67/312 (21.47%), Postives = 135/312 (43.27%), Query Frame = 2 Query: 518 QISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQL--------NIWAQNQKILHRFSWASLLEIIHR-EPEKL-NEDLSEFSWNIENRWKPIIIHIYSDRW--SDSNRLQKFIKILKTFSTVVDFPFDDS-----GRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNF 1402 + ++++ A+ +W + H L+E+LS L Y++ L+ + + K+ +++D++ A+ +L + W + ++ + +P KL L + + + P + R+ S + L K I + ++ G +R K ++ HK + ++GW+ GAL I H V+CLG PL + G RG + +D + + L + G + N + +E+F++++ R D + +GG D LR++S ++Q +VDR I I +F Sbjct: 171 KCARKVRQALASMNWDTKLTQWLHTTLIESLSLPMLAAYLDVLQTL--KTKLPSLIDRMLLPTAKTGAPSAEALSLLLKRPWDPAVGVLSQNKPSKLPGSPLILIAPSTPS--NPALATTRRMRFWQSQLSCLGKVIPVHTHVNSGASISITQCLEHMLGTVRAKVM----EVHSHFPHKP--IVLVGWNAGAL------IACHVSLMEYLTAVVCLGFPLITVNGLRGDV-DDPLLDMKTPVLFVIGQHALQCNAESMEEFREKL--RADNSMVVVGGADDNLRINSAKMKSEGLTQTIVDRCIQDEIADF 463
BLAST of SMED30023981 vs. Planmine SMEST
Match: SMESG000026343.1 (SMESG000026343.1) HSP 1 Score: 1005.74 bits (2599), Expect = 0.000e+0 Identity = 489/489 (100.00%), Postives = 489/489 (100.00%), Query Frame = 2 Query: 35 MLNWVDPYVSLNNIYHDHSYAFSESYYNNFVKNYYLQPSFHNPSEILLDNNANIEIGESDMIIDHNFIDNFSQLCGSVLKKLFGNKYEISSDNGIKTEISNTDSQDKSKCFNFFKSDEWTISDTNMKTRLLFILEEGYGSLIVLPTINENLDLINFNNSFRQISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQLNIWAQNQKILHRFSWASLLEIIHREPEKLNEDLSEFSWNIENRWKPIIIHIYSDRWSDSNRLQKFIKILKTFSTVVDFPFDDSGRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNFAIDQVLHSYYKREELVEYTQTKGQSSTDQMKFF 1501 MLNWVDPYVSLNNIYHDHSYAFSESYYNNFVKNYYLQPSFHNPSEILLDNNANIEIGESDMIIDHNFIDNFSQLCGSVLKKLFGNKYEISSDNGIKTEISNTDSQDKSKCFNFFKSDEWTISDTNMKTRLLFILEEGYGSLIVLPTINENLDLINFNNSFRQISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQLNIWAQNQKILHRFSWASLLEIIHREPEKLNEDLSEFSWNIENRWKPIIIHIYSDRWSDSNRLQKFIKILKTFSTVVDFPFDDSGRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNFAIDQVLHSYYKREELVEYTQTKGQSSTDQMKFF Sbjct: 1 MLNWVDPYVSLNNIYHDHSYAFSESYYNNFVKNYYLQPSFHNPSEILLDNNANIEIGESDMIIDHNFIDNFSQLCGSVLKKLFGNKYEISSDNGIKTEISNTDSQDKSKCFNFFKSDEWTISDTNMKTRLLFILEEGYGSLIVLPTINENLDLINFNNSFRQISKRIYYTYAASHWRMDICSTAHAYLLENLSDEYLVIYIESLRVMYHRKKVRTILDQLNIWAQNQKILHRFSWASLLEIIHREPEKLNEDLSEFSWNIENRWKPIIIHIYSDRWSDSNRLQKFIKILKTFSTVVDFPFDDSGRLRKKFEALRNQLQLELKHKKSSVFVMGWDLGALLGLLSSIKIHGYFTSVFCGVICLGLPLKGLKGERGIIPEDYIHLLTKETLIISGDMSSLGNGDDIEDFKDRMKGRVDIKHINIGGCDHLLRLSSGYAMRYRISQDVVDRLIAKNIRNFAIDQVLHSYYKREELVEYTQTKGQSSTDQMKFF 489
BLAST of SMED30023981 vs. Planmine SMEST
Match: SMESG000026344.1 (SMESG000026344.1) HSP 1 Score: 337.806 bits (865), Expect = 2.603e-137 Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = -2 Query: 1561 LSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 2043 LSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNK CREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS Sbjct: 896 LSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 1056 HSP 2 Score: 172.17 bits (435), Expect = 2.603e-137 Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = -3 Query: 2088 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIEV 2402 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKQTVMTTVYGVTQYGGTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE+ Sbjct: 792 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKQTVMTTVYGVTQYGGTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIEL 896
BLAST of SMED30023981 vs. Planmine SMEST
Match: SMESG000026344.1 (SMESG000026344.1) HSP 1 Score: 307.375 bits (786), Expect = 4.603e-128 Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = -2 Query: 1606 LSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKFCREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKG 2043 LSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNK CREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKG Sbjct: 896 LSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKG 1041 HSP 2 Score: 171.785 bits (434), Expect = 4.603e-128 Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = -3 Query: 2088 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIEV 2402 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKQTVMTTVYGVTQYGGTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIE+ Sbjct: 792 QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKQTVMTTVYGVTQYGGTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIEL 896 The following BLAST results are available for this feature:
BLAST of SMED30023981 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30023981 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 3
BLAST of SMED30023981 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of SMED30023981 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of SMED30023981 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of SMED30023981 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30023981 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30023981 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30023981 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of SMED30023981 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of SMED30023981 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of SMED30023981 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 4
BLAST of SMED30023981 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30023981 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30023981 ID=SMED30023981|Name=SMED30023981|organism=Schmidtea mediterranea sexual|type=transcript|length=2404bpback to top protein sequence of SMED30023981-orf-1 >SMED30023981-orf-1 ID=SMED30023981-orf-1|Name=SMED30023981-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=491bp MLNWVDPYVSLNNIYHDHSYAFSESYYNNFVKNYYLQPSFHNPSEILLDNback to top protein sequence of SMED30023981-orf-2 >SMED30023981-orf-2 ID=SMED30023981-orf-2|Name=SMED30023981-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=112bp QDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKQTVMTTVYGVTback to top protein sequence of SMED30023981-orf-3 >SMED30023981-orf-3 ID=SMED30023981-orf-3|Name=SMED30023981-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=144bp MNFIVKQPYFADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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