LIM domain only protein 3

Overview


Name	LIM domain only protein 3
Smed ID	SMED30023969
Length (bp)	1037

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of LIM domain only protein 3 (SMED30023969) t-SNE clustered cells

Violin plots show distribution of expression levels for LIM domain only protein 3 (SMED30023969) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of LIM domain only protein 3 (SMED30023969) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for LIM domain only protein 3 (SMED30023969) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30023969

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 14

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
zeta neoblast	SMED30023969	SMESG000037556.1	SMED30023969	smed_20140614	PMID:29906446 Zeng et al., 2018
epidermal progenitor cell	SMED30023969	SMESG000037556.1	SMED30023969	smed_20140614	PMID:29906446 Zeng et al., 2018
X1 cell	SMED30023969	SMESG000037556.1	SmedASXL_001773	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
Category 2 cell	SMED30023969	SMESG000037556.1	SMED30023969	smed_20140614	PMID:29100657 Cheng et al., 2018
neoblast	SMED30023969	SMESG000037556.1	SMED30023969	smed_20140614	PMID:29100657 Cheng et al., 2018
X1 cell	SMED30023969	SMESG000037556.1	SMED30023969	smed_20140614	PMID:29100657 Cheng et al., 2018
nervous system	SMED30023969	SMESG000037556.1	dd_Smed_v4_6263_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30023969	SMESG000037556.1	dd_Smed_v4_6263_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30023969	SMESG000037556.1	dd_Smed_v4_6263_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30023969	SMESG000037556.1	dd_Smed_v4_6263_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30023969	SMESG000037556.1	dd_Smed_v4_6263_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30023969	SMESG000065665.1	Contig4531	GPL15192	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30023969	SMESG000037556.1	Contig4531	GPL15192	PMID:29674431 Fincher et al., 2018
zeta neoblast	SMED30023969	SMESG000037556.1	dd_Smed_v4_6263_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of LIM domain only protein 3 vs. Ensembl Human
Match: LMO1 (LIM domain only 1 [Source:HGNC Symbol;Acc:HGNC:6641])

HSP 1 Score: 151.369 bits (381), Expect = 1.360e-44
Identity = 81/136 (59.56%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG+ G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE  L     SQ+
Sbjct:    9 KQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQV 144

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Human
Match: LMO1 (LIM domain only 1 [Source:HGNC Symbol;Acc:HGNC:6641])

HSP 1 Score: 151.369 bits (381), Expect = 1.828e-44
Identity = 81/136 (59.56%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG+ G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE  L     SQ+
Sbjct:   20 KQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQV 155

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Human
Match: LMO1 (LIM domain only 1 [Source:HGNC Symbol;Acc:HGNC:6641])

HSP 1 Score: 151.369 bits (381), Expect = 2.016e-44
Identity = 81/136 (59.56%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG+ G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE  L     SQ+
Sbjct:   19 KQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQV 154

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Human
Match: LMO3 (LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:6643])

HSP 1 Score: 150.599 bits (379), Expect = 2.729e-44
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:    9 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 144

[Close]

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:    9 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 144

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Celegans
Match: lim-4 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0A1X7RC92])

HSP 1 Score: 60.077 bits (144), Expect = 7.042e-10
Identity = 39/123 (31.71%), Postives = 64/123 (52.03%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIM 784
            CT CQ  I +   L +D + +HE+CL+C+ C      + +  + +     CK  Y R  G    C +CD+ I A + V RA ++VYHL CF C +C  +   G++  L    +LC+  + E++
Sbjct:   98 CTQCQHQIQDKFFLSIDGRNYHENCLQCSTCE---NPLSNKCFYKDKTFYCKGCYFRELGP--KCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGNLLCKQHFLELV 215

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Celegans
Match: lin-11 (pep chromosome:WBcel235:I:10248256:10255327:1 gene:WBGene00003000.1 transcript:ZC247.3.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lin-11)

HSP 1 Score: 58.151 bits (139), Expect = 2.857e-9
Identity = 36/121 (29.75%), Postives = 61/121 (50.41%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLY-GNRILCEADYE 775
            C +C + I + ++  V  + WH+    C  C      +  + ++R  L+LCK D+ R +     C  CD  +   +LV RA   V+H+ CF C  C      GD+ Y+  GNR +C++D++
Sbjct:   68 CAACAQPILDRYVFTVLGKCWHQ---SCLRCCDCRAPMSMTCFSRDGLILCKTDFSRRYSQ--RCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFVCQSDFQ 183

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Celegans
Match: lim-4 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0A1X7RC92])

HSP 1 Score: 57.3806 bits (137), Expect = 5.469e-9
Identity = 38/123 (30.89%), Postives = 63/123 (51.22%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIM 784
            CT CQ  I +   L +D + +HE+CL+C+ C      + +  + +     CK  Y R       C +CD+ I A + V RA ++VYHL CF C +C  +   G++  L    +LC+  + E++
Sbjct:   98 CTQCQHQIQDKFFLSIDGRNYHENCLQCSTCE---NPLSNKCFYKDKTFYCKGCYFRCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGNLLCKQHFLELV 217

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Celegans
Match: ceh-14 (Homeobox protein ceh-14 [Source:UniProtKB/Swiss-Prot;Acc:P20271])

HSP 1 Score: 55.0694 bits (131), Expect = 2.450e-8
Identity = 39/136 (28.68%), Postives = 76/136 (55.88%), Query Frame = 2

Query:  377 MNSSNANFEKSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGN--RILCEADYEE 778
            +N+ + N E++  C+ C + I +  + KV+ + +H     C  C+    E+G++ + R D + C+  + + FG+   C++C++ I    +V +A + VYH+ECF C  C      G++ YL  +  R++C+ DYE+
Sbjct:   36 VNAGHPNNEEA-ICSLCDKKIRDRFVSKVNGRCYH---SSCLRCSTCKDELGATCFLREDSMYCRAHFYKKFGT--KCSSCNEGIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADDARLVCKDDYEQ 165

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Celegans
Match: lim-4 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0A1X7RC92])

HSP 1 Score: 53.5286 bits (127), Expect = 9.239e-8
Identity = 39/132 (29.55%), Postives = 66/132 (50.00%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGS--------IG-YCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIM 784
            CT CQ  I +   L +D + +HE+CL+C+ C      + +  + +     CK  Y R   +        +G  C +CD+ I A + V RA ++VYHL CF C +C  +   G++  L    +LC+  + E++
Sbjct:   98 CTQCQHQIQDKFFLSIDGRNYHENCLQCSTCE---NPLSNKCFYKDKTFYCKGCYFRTHVTSTASSCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGNLLCKQHFLELV 226

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340364)

HSP 1 Score: 156.377 bits (394), Expect = 9.154e-45
Identity = 83/137 (60.58%), Postives = 106/137 (77.37%), Query Frame = 2

Query:  407 SPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQIPL 817
            S  C  C + I + +LL+  +  WHEDCL+C CC+CRLGEVGS+LY + +L+LCKRDYLR+FG+ GYC AC KVIPAFE+VMRA + VYHLECF CQ+CNHRFCVGD+ YL  N+ILCE DYEE +++  +A+   L
Sbjct:   89 SQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFASMANHPML 225

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340366)

HSP 1 Score: 156.377 bits (394), Expect = 9.154e-45
Identity = 83/137 (60.58%), Postives = 106/137 (77.37%), Query Frame = 2

Query:  407 SPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQIPL 817
            S  C  C + I + +LL+  +  WHEDCL+C CC+CRLGEVGS+LY + +L+LCKRDYLR+FG+ GYC AC KVIPAFE+VMRA + VYHLECF CQ+CNHRFCVGD+ YL  N+ILCE DYEE +++  +A+   L
Sbjct:   89 SQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFASMANHPML 225

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340363)

HSP 1 Score: 157.147 bits (396), Expect = 2.304e-44
Identity = 81/131 (61.83%), Postives = 104/131 (79.39%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQ 808
            C  C + I + +LL+  +  WHEDCL+C CC+CRLGEVGS+LY + +L+LCKRDYLR+FG+ GYC AC KVIPAFE+VMRA + VYHLECF CQ+CNHRFCVGD+ YL  N+ILCE DYEE +++  +A+ 
Sbjct:  162 CAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFASMANH 292

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340365)

HSP 1 Score: 155.606 bits (392), Expect = 8.277e-44
Identity = 83/137 (60.58%), Postives = 106/137 (77.37%), Query Frame = 2

Query:  407 SPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQIPL 817
            S  C  C + I + +LL+  +  WHEDCL+C CC+CRLGEVGS+LY + +L+LCKRDYLR+FG+ GYC AC KVIPAFE+VMRA + VYHLECF CQ+CNHRFCVGD+ YL  N+ILCE DYEE +++  +A+   L
Sbjct:  160 SQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFASMANHPML 296

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340367)

HSP 1 Score: 156.377 bits (394), Expect = 8.495e-44
Identity = 83/137 (60.58%), Postives = 106/137 (77.37%), Query Frame = 2

Query:  407 SPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQIPL 817
            S  C  C + I + +LL+  +  WHEDCL+C CC+CRLGEVGS+LY + +L+LCKRDYLR+FG+ GYC AC KVIPAFE+VMRA + VYHLECF CQ+CNHRFCVGD+ YL  N+ILCE DYEE +++  +A+   L
Sbjct:   89 SQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFASMANHPML 225

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Zebrafish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:553774])

HSP 1 Score: 150.599 bits (379), Expect = 1.774e-44
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:    9 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 144

[Close]

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:    9 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 144

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Zebrafish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:553774])

HSP 1 Score: 150.599 bits (379), Expect = 2.235e-44
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:   20 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 155

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Zebrafish
Match: lmo1 (LIM domain only 1 [Source:NCBI gene;Acc:280646])

HSP 1 Score: 150.599 bits (379), Expect = 2.656e-44
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG+ G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE  L     +Q+
Sbjct:   19 KQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGSFETQV 154

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Zebrafish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:553774])

HSP 1 Score: 150.984 bits (380), Expect = 2.720e-44
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:   31 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 166

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Xenopus
Match: lmo2 (LIM domain only 2 [Source:NCBI gene;Acc:496679])

HSP 1 Score: 117.087 bits (292), Expect = 2.692e-31
Identity = 66/128 (51.56%), Postives = 81/128 (63.28%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKI 799
            C  CQ+ I + + LK  +QYWHEDCL C+ C CRLGEVG  LY +    LC+RDYLR+FG  G C +CDK I AFE+ MR    VYHLECF C  C   FCVGD+  L  + I+CE D  E    N++
Sbjct:   27 CGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKLNEM 154

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Xenopus
Match: lmo2 (LIM domain only 2 [Source:NCBI gene;Acc:496679])

HSP 1 Score: 116.316 bits (290), Expect = 3.805e-31
Identity = 66/128 (51.56%), Postives = 81/128 (63.28%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKI 799
            C  CQ+ I + + LK  +QYWHEDCL C+ C CRLGEVG  LY +    LC+RDYLR+FG  G C +CDK I AFE+ MR    VYHLECF C  C   FCVGD+  L  + I+CE D  E    N++
Sbjct:   24 CGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKLNEM 151

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Xenopus
Match: lmo2 (LIM domain only 2 [Source:NCBI gene;Acc:496679])

HSP 1 Score: 116.316 bits (290), Expect = 4.464e-31
Identity = 66/128 (51.56%), Postives = 81/128 (63.28%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKI 799
            C  CQ+ I + + LK  +QYWHEDCL C+ C CRLGEVG  LY +    LC+RDYLR+FG  G C +CDK I AFE+ MR    VYHLECF C  C   FCVGD+  L  + I+CE D  E    N++
Sbjct:   30 CGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKLNEM 157

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Xenopus
Match: lmo4.2 (LIM domain only 4, gene 2 [Source:NCBI gene;Acc:548539])

HSP 1 Score: 105.916 bits (263), Expect = 5.553e-27
Identity = 62/150 (41.33%), Postives = 89/150 (59.33%), Query Frame = 2

Query:  377 MNSSNANFEKSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIML---YNKIASQIPL 817
            ++ SN    K+  C  C   IA+  LL    +YWH  CL+C+CC  +LGE+G+S Y ++ ++LC+ DY+R+FGS G C+AC + IPA E+VMRA   VYHL+CF C  C +R   GD+ +     I CE D    +L    N + S  P+
Sbjct:   13 LSLSNGGPPKA--CAGCGGKIADRFLLYSMERYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGSSGACSACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGAIFCEHDRPTGLLSGHLNPLQSNPPM 160

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Xenopus
Match: lmo4.2 (LIM domain only 4, gene 2 [Source:NCBI gene;Acc:548539])

HSP 1 Score: 106.686 bits (265), Expect = 1.499e-26
Identity = 63/148 (42.57%), Postives = 88/148 (59.46%), Query Frame = 2

Query:  383 SSNANFEKSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIML---YNKIASQIPL 817
            SSN    K+  C  C   IA+  LL    +YWH  CL+C+CC  +LGE+G+S Y ++ ++LC+ DY+R+FGS G C+AC + IPA E+VMRA   VYHL+CF C  C +R   GD+ +     I CE D    +L    N + S  P+
Sbjct:   85 SSNGGPPKA--CAGCGGKIADRFLLYSMERYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGSSGACSACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGAIFCEHDRPTGLLSGHLNPLQSNPPM 230

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Mouse
Match: Lmo1 (LIM domain only 1 [Source:MGI Symbol;Acc:MGI:102812])

HSP 1 Score: 150.984 bits (380), Expect = 1.260e-44
Identity = 81/136 (59.56%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG+ G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE  L     SQ+
Sbjct:    9 KQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQVDYEEGHLNGTFESQV 144

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Mouse
Match: Lmo3 (LIM domain only 3 [Source:MGI Symbol;Acc:MGI:102810])

HSP 1 Score: 150.599 bits (379), Expect = 1.874e-44
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:    9 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 144

[Close]

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:    9 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 144

[Close]

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:    9 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 144

[Close]

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:    9 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 144

[Close]

BLAST of LIM domain only protein 3 vs. UniProt/SwissProt
Match: sp|Q99MB5|LMO3_RAT (LIM domain only protein 3 OS=Rattus norvegicus OX=10116 GN=Lmo3 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 5.681e-44
Identity = 80/136 (58.82%), Postives = 101/136 (74.26%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG+ G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:    9 KQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 144

[Close]

BLAST of LIM domain only protein 3 vs. UniProt/SwissProt
Match: sp|P25800|RBTN1_HUMAN (Rhombotin-1 OS=Homo sapiens OX=9606 GN=LMO1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 8.779e-44
Identity = 81/136 (59.56%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG+ G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE  L     SQ+
Sbjct:   20 KQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQV 155

[Close]

BLAST of LIM domain only protein 3 vs. UniProt/SwissProt
Match: sp|Q3B8H4|RBTN1_XENLA (Rhombotin-1 OS=Xenopus laevis OX=8355 GN=lmo1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.172e-43
Identity = 81/136 (59.56%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG+ G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE  L     SQ+
Sbjct:   20 KQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGSFDSQV 155

[Close]

BLAST of LIM domain only protein 3 vs. UniProt/SwissProt
Match: sp|Q5RBW7|LMO3_PONAB (LIM domain only protein 3 OS=Pongo abelii OX=9601 GN=LMO3 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.311e-43
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:    9 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 144

[Close]

BLAST of LIM domain only protein 3 vs. UniProt/SwissProt
Match: sp|Q8BZL8|LMO3_MOUSE (LIM domain only protein 3 OS=Mus musculus OX=10090 GN=Lmo3 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.311e-43
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:    9 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 144

[Close]

BLAST of LIM domain only protein 3 vs. TrEMBL
Match: H9IV77 (Uncharacterized protein OS=Bombyx mori OX=7091 PE=4 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.932e-48
Identity = 90/144 (62.50%), Postives = 111/144 (77.08%), Query Frame = 2

Query:  383 SSNANFEKSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQIP 814
            +S  N  +   C  C +VI E +LLK  +Q WHEDCL+C CC+CRLGEVG +LY RA+L+LCKRDYLR+FG+ GYC AC+KVIPAFE+VMRA S VYHLECF CQ+CNHRFCVGD+ YL  N+ILCE DYEE +++  +A   P
Sbjct:   25 TSAQNPPQPQICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFANMAYNPP 168

[Close]

BLAST of LIM domain only protein 3 vs. TrEMBL
Match: A0A194QA69 (Rhombotin-1 OS=Papilio xuthus OX=66420 GN=RR46_05099 PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.363e-47
Identity = 93/155 (60.00%), Postives = 114/155 (73.55%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQIP----LTGSFVF*SSDPTISVLS 868
            C  C +VI E +LLK  +Q WHEDCL+C CC+CRLGEVG +LY RA+L+LCKRDYLR+FG+ GYC AC+KVIPAFE+VMRA S VYHLECF CQ+CNHRFCVGD+ YL  N+ILCE DYEE +++  +A   P    L       S  PT + +S
Sbjct:   32 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFANMAYNPPPLAHLKRQTTHLSPPPTSNAMS 186

[Close]

BLAST of LIM domain only protein 3 vs. TrEMBL
Match: Q2F5Q2 (Beadex/dLMO protein OS=Bombyx mori OX=7091 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.885e-47
Identity = 90/144 (62.50%), Postives = 111/144 (77.08%), Query Frame = 2

Query:  383 SSNANFEKSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQIP 814
            +S  N  +   C  C +VI E +LLK  +Q WHEDCL+C CC+CRLGEVG +LY RA+L+LCKRDYLR+FG+ GYC AC+KVIPAFE+VMRA S VYHLECF CQ+CNHRFCVGD+ YL  N+ILCE DYEE +++  +A   P
Sbjct:   45 TSAQNPPQPQICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFANMAYNPP 188

[Close]

BLAST of LIM domain only protein 3 vs. TrEMBL
Match: A0A0L8HLK7 (Uncharacterized protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22011880mg PE=4 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.793e-47
Identity = 88/140 (62.86%), Postives = 112/140 (80.00%), Query Frame = 2

Query:  383 SSNANFEKSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIA 802
            S+     K   C  C++ I E +LLK  +QYWHEDCL+C+CC+CRLGEVGS+LY +A+LLLC+RDYLR+FG+ GYC+AC K+IPAFELVMRA + VYHLECF CQ+CNHRFCVGD+ YL  N+ILCE DYEE M++  ++
Sbjct:    7 SATGMANKRQECAGCKKKITERYLLKALDQYWHEDCLKCSCCDCRLGEVGSTLYTKANLLLCRRDYLRLFGTTGYCSACSKMIPAFELVMRAKTNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERMVFANMS 146

[Close]

BLAST of LIM domain only protein 3 vs. TrEMBL
Match: A0A2A4JYF4 (Uncharacterized protein OS=Heliothis virescens OX=7102 GN=B5V51_8588 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.980e-47
Identity = 88/133 (66.17%), Postives = 107/133 (80.45%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQIP 814
            C  C +VI E +LLK  +Q WHEDCL+C CC+CRLGEVG +LY RA+L+LCKRDYLR+FG+ GYC AC+KVIPAFE+VMRA S VYHLECF CQ+CNHRFCVGD+ YL  N+ILCE DYEE +++  +A   P
Sbjct:   57 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERLVFANMAYNPP 189

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Cavefish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:103033888])

HSP 1 Score: 150.599 bits (379), Expect = 1.503e-44
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:    9 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 144

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Cavefish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:103033888])

HSP 1 Score: 150.599 bits (379), Expect = 1.894e-44
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:   20 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 155

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Cavefish
Match: lmo1 (LIM domain only 1 [Source:NCBI gene;Acc:280646])

HSP 1 Score: 150.984 bits (380), Expect = 2.201e-44
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG+ G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE  L     +Q+
Sbjct:   33 KQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGSFETQV 168

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Cavefish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:103033888])

HSP 1 Score: 150.599 bits (379), Expect = 1.434e-43
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++    A Q+
Sbjct:   85 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQV 220

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Cavefish
Match: lmo2 (LIM domain only 2 [Source:NCBI gene;Acc:111190647])

HSP 1 Score: 109.383 bits (272), Expect = 1.341e-28
Identity = 64/126 (50.79%), Postives = 76/126 (60.32%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYN 793
            C  C + I +   LK   QYWHEDCL C+ C CRLGEVG  LY +    LC+RDYLR+FG  G C +C+K I AFE+ MR    VYHLECF C  C   FCVGD+  L  + I+CE D  E    N
Sbjct:   30 CGGCHQSIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIFEWTKLN 155

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Sea Lamprey
Match: lmo2 (LIM domain only 2 (rhombotin-like 1) [Source:NCBI gene;Acc:30332])

HSP 1 Score: 112.079 bits (279), Expect = 2.591e-30
Identity = 63/121 (52.07%), Postives = 79/121 (65.29%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEE 778
            C  C++ I++ +LLK   Q+WHEDCL C+ C CRLGEVG  LY +    LC+RDYLR+FG  G+C +C K I AFE+ MR    VYHLECF C  C   FCVGD+  L  + I+CE D  E
Sbjct:   30 CGGCRQPISDRYLLKAIEQFWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGHCASCGKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLVNSDIICEQDIYE 150

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Sea Lamprey
Match: lmo2 (LIM domain only 2 (rhombotin-like 1) [Source:NCBI gene;Acc:30332])

HSP 1 Score: 111.309 bits (277), Expect = 4.022e-30
Identity = 64/130 (49.23%), Postives = 82/130 (63.08%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIAS 805
            C  C++ I++ +LLK   Q+WHEDCL C+ C CRLGEVG  LY +    LC+RDYLR+FG  G+C +C K I AFE+ MR    VYHLECF C  C   FCVGD+  L  + I+CE D  E    N + +
Sbjct:   29 CGGCRQPISDRYLLKAIEQFWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGHCASCGKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLVNSDIICEQDIYEWSKINIMMT 158

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Sea Lamprey
Match: lmo4b (LIM domain only 4b [Source:ZFIN;Acc:ZDB-GENE-030131-3570])

HSP 1 Score: 98.9821 bits (245), Expect = 3.124e-25
Identity = 59/135 (43.70%), Postives = 78/135 (57.78%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQIPLT 820
            C  C   IA+  LL   + YWH  CL+C+CC  +LG++G+S Y R  ++LC+ DY+RMFGS G CNAC + IPA ELVM+    VYHL+CF C  C  R   GD+ +     + CE D        + A   PLT
Sbjct:   18 CAGCGGKIADRFLLYSMDCYWHSRCLKCSCCQAQLGDLGTSCYTRQGMILCRDDYIRMFGSSGACNACGQSIPASELVMKTQGNVYHLKCFACATCRTRLVPGDRFHYVNGSLFCEHD--------RPAGPGPLT 144

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Sea Lamprey
Match: PXN (paxillin [Source:HGNC Symbol;Acc:HGNC:9718])

HSP 1 Score: 48.1358 bits (113), Expect = 8.273e-7
Identity = 40/140 (28.57%), Postives = 62/140 (44.29%), Query Frame = 2

Query:  407 SPCCTSCQEVIAESH-LLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQIPLTG 823
            SP C  C E + ++  ++   ++ WH +   C  C    GE G   + R     C++DY  MF     CN C + I   +  + A + V+H ECF C+EC   F +    + +  +  CE  Y E         Q P+TG
Sbjct:   47 SPRCAYCNEAVMDNQRVVTALDRTWHPEHFFCAQCGRPFGEEG--FHERDGKPYCRQDYYGMFAPK--CNGCSRAI--MQNYLSALNTVWHPECFICRECFTPF-INGSFFEHEGQPYCEVHYHERRGSLCSGCQKPITG 179

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002189.1 (pep scaffold:Pmarinus_7.0:GL483992:1961:4872:1 gene:ENSPMAG00000001979.1 transcript:ENSPMAT00000002189.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 47.3654 bits (111), Expect = 1.956e-6
Identity = 25/63 (39.68%), Postives = 35/63 (55.56%), Query Frame = 2

Query:  584 RMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLY-GNRILCEAD 769
            R+FG    C  C+      + VMRA S +YH+ECF C+ C+ +   GD+  L  G  +LC AD
Sbjct:    1 RLFGI--KCAKCNASFSKTDFVMRARSHIYHMECFRCETCSRQLLPGDEFALRDGGGLLCRAD 61

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Nematostella
Match: EDO48809 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RIH4])

HSP 1 Score: 154.836 bits (390), Expect = 1.871e-46
Identity = 83/128 (64.84%), Postives = 100/128 (78.12%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKI 799
            C  C  +I E  LLK  ++YWHEDCL+C+CC CRLGEVGS+LY +A+L+LCKRDYLR+FG+ G+C+ C K IPAFE+VMRA   VYHLECF CQ CN RFCVGDK YL+ NRILC  DYEE+M Y  +
Sbjct:   20 CGGCGVLINERFLLKALDRYWHEDCLKCSCCECRLGEVGSTLYTKANLILCKRDYLRLFGTRGFCSVCCKTIPAFEMVMRARDNVYHLECFSCQRCNQRFCVGDKFYLFNNRILCVDDYEEMMSYRNM 147

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Nematostella
Match: EDO37872 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SEJ4])

HSP 1 Score: 131.724 bits (330), Expect = 6.148e-38
Identity = 66/124 (53.23%), Postives = 85/124 (68.55%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIML 787
            C  C   I    LL+  +Q+WHE+CL+C+ C   L E+G   Y R DL+LCKRDY+R+FG+ G C+ C K IP  E+VMRA   VYHL+CF CQ C HRFCVGDK YL+ N +LCE DY ++M+
Sbjct:    2 CAQCGNGIQSQFLLRALDQFWHEECLKCSYCCGMLSEMGPKFYFRGDLILCKRDYIRIFGTTGICSFCFKTIPPLEMVMRARQHVYHLDCFACQVCRHRFCVGDKFYLHQNTVLCEDDYGDLMM 125

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Nematostella
Match: EDO37316 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SG43])

HSP 1 Score: 101.293 bits (251), Expect = 4.650e-26
Identity = 54/123 (43.90%), Postives = 80/123 (65.04%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIM 784
            C  C E I +  LL   +QYWH +CL+C+CC  RLGE+G+S Y++  ++LCK DY+R++G+ G C  C K+IPA ELVM+    VYHL CF C  C+++   GD+ ++   R+ CE D   ++
Sbjct:   19 CAGCGEKIIDRFLLLALDQYWHVNCLKCSCCEARLGEIGTSCYSKGGMILCKTDYVRLYGNSGACAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQLVPGDRFHVVNGRLFCENDDPNLL 141

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Nematostella
Match: EDO43354 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RYP5])

HSP 1 Score: 71.2478 bits (173), Expect = 2.288e-14
Identity = 45/129 (34.88%), Postives = 69/129 (53.49%), Query Frame = 2

Query:  401 EKSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXX-XXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIM 784
            ++   C  C   I E   L   +Q WH DCL+C+        E+  + +++  ++LC+ DY R F S+  C++C + I + ELVMRA   VYH+ CF C  C      G+   + G RI C+ DYEE++
Sbjct:    4 KQQAVCAGCGSRILERFYLMAVDQEWHADCLKCSDCELRLDNEL--TCFSKDGVILCREDYYRRF-SVKKCSSCSQAISSKELVMRARDQVYHVNCFACDRCKRMLATGEYFGMRGIRIYCKEDYEELL 129

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Nematostella
Match: LHX1 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S9E9])

HSP 1 Score: 63.5438 bits (153), Expect = 8.161e-12
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGN-RILCEADY 772
            C  CQ  IA+  LLKV +  WH  C++C+ C C L E     ++R   L CK D+ R +G+   C+ CD+ I   ++V RA   V+H++CF C  C  +   GD+ Y  G+   +C  DY
Sbjct:    5 CAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPLTE---RCFSREGKLFCKTDFYRRYGT--KCSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDELYYIGDGSFICRDDY 119

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Medaka
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:101154994])

HSP 1 Score: 151.369 bits (381), Expect = 9.284e-45
Identity = 80/136 (58.82%), Postives = 101/136 (74.26%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE ++ +  A Q+
Sbjct:   20 KPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKDGYAPQV 155

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Medaka
Match: lmo1 (rhombotin-1 [Source:NCBI gene;Acc:101162198])

HSP 1 Score: 150.599 bits (379), Expect = 2.237e-44
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 2

Query:  404 KSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQI 811
            K   C  C   I + +LLK  ++YWHEDCL+C CC+CRLGEVGS+LY +A+L+LC+RDYLR+FG+ G C AC K+IPAFE+VMRA   VYHL+CF CQ CN RFCVGDK +L  N ILC+ DYEE  L     +Q+
Sbjct:   19 KQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGSFETQV 154

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Medaka
Match: ENSORLT00000030604.1 (rhombotin-1 [Source:NCBI gene;Acc:101174827])

HSP 1 Score: 136.346 bits (342), Expect = 5.247e-39
Identity = 73/126 (57.94%), Postives = 93/126 (73.81%), Query Frame = 2

Query:  401 EKSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEE 778
            EK   C  C   I +  +L+  +++WHEDCL+C CC+CRLG VGS+LY R++L+LC+RDYLR+FG  G C AC K+IPAFE+VMRA   VYHL+CF CQ C  RFCVGDK +L  N ILC+ DYE+
Sbjct:   18 EKPRGCAGCNGKILDRFMLQALDRFWHEDCLKCACCDCRLGRVGSTLYTRSNLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCRQRFCVGDKFFLKNNMILCQLDYEK 143

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Medaka
Match: lmo2 (LIM domain only 2 [Source:NCBI gene;Acc:101169199])

HSP 1 Score: 110.923 bits (276), Expect = 3.069e-29
Identity = 65/126 (51.59%), Postives = 77/126 (61.11%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYN 793
            C  CQ+ I +   LK   QYWHEDCL C+ C CRLGEVG  LY +    LC+RDYLR+FG  G C +C+K I AFE+ MR    VYHLECF C  C   FCVGD+  L  + I+CE D  E    N
Sbjct:   30 CGGCQQNIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIFEWTKLN 155

[Close]

BLAST of LIM domain only protein 3 vs. Ensembl Medaka
Match: lmo4b (LIM domain only 4 [Source:NCBI gene;Acc:101173927])

HSP 1 Score: 104.76 bits (260), Expect = 7.988e-27
Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIAS 805
            C  C   IA+  LL   + YWH  CL+C+CC  +LGE+G+S Y ++ ++LC+ DY+R+FG+ G C+AC + IPA ELVMRA   VYHL+CF C  C +R   GD+ +     + CE D    ++   ++S
Sbjct:   23 CAGCGGKIADRFLLYTMDTYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLSS 152

[Close]

BLAST of LIM domain only protein 3 vs. Planmine SMEST
Match: SMESG000037556.1 (SMESG000037556.1)

HSP 1 Score: 291.582 bits (745), Expect = 8.949e-100
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 2

Query:  377 MNSSNANFEKSPCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQIPLTGSFVF 835
            MNSSNANFEKSPCCTSCQEVIAESHLLKVDNQYWHEDCLRCNCCNCRLGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQIPLTGSFVF
Sbjct:    1 MNSSNANFEKSPCCTSCQEVIAESHLLKVDNQYWHEDCLRCNCCNCRLGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQIPLTGSFVF 153

[Close]

BLAST of LIM domain only protein 3 vs. Planmine SMEST
Match: SMESG000028893.1 (SMESG000028893.1)

HSP 1 Score: 119.783 bits (299), Expect = 1.766e-31
Identity = 73/150 (48.67%), Postives = 103/150 (68.67%), Query Frame = 2

Query:  416 CTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLY-GNRILCEADYEEIMLYNKIASQIPLTGSFVF*SSDPTISV 862
            C+ CQ  I E ++L VD + +HEDCLRC+CC+ RL E+    Y +A+++LCKRDYLR++G+ G C+ACD  I AFE VMRA + +YHL+CF C  C  RFCVGDK YL+  N+ILCE D+  I+L ++  S +  + S++     PT S+
Sbjct:   33 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDH-NIILCSQTHSIVNNSNSWII----PTNSI 177

[Close]

BLAST of LIM domain only protein 3 vs. Planmine SMEST
Match: SMESG000071273.1 (SMESG000071273.1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.172e-14
Identity = 31/79 (39.24%), Postives = 53/79 (67.09%), Query Frame = 2

Query:  542 YARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLYGNR-ILCEADYE 775
            Y+++D + CK D+ R +G+   C ACD+VIPA E++ +A + +YHLECF C  C+ +   G++ +L  +R ++C  D+E
Sbjct:   85 YSKSDEIFCKEDFFRRYGT--RCAACDEVIPASEVIRKAQNNIYHLECFACISCHRQLNTGEEFFLLSSRKLMCRPDFE 161

[Close]

BLAST of LIM domain only protein 3 vs. Planmine SMEST
Match: SMESG000043039.1 (SMESG000043039.1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.531e-10
Identity = 53/169 (31.36%), Postives = 84/169 (49.70%), Query Frame = 2

Query:  329 HLLNVFKFFSFKICNRMNSSNANFEKS-----PCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRA-GSFVYHLECFGCQECNHRFCVGDK-CYLYGNRILCEADYEEIMLYNKIASQIP 814
            HLLN        I  ++ SS  NF K      P CTSC   I + +L  + +++WH  CLRC  C+  L E     + R   L C +DY +   +   C+ C  +I   +LV  +  S V+HL+CF C  C+ +   GD+ C L   R +C  D++ I  + ++++ +P
Sbjct:   11 HLLNS------PIPVKLTSSIHNFNKPFINPVPTCTSCSRPIIDRYLHNIADKFWHVQCLRCADCDIPLSE---RCFERDGKLFCSKDYRKRVSA--KCSLCLNIILPTDLVRHSRDSSVFHLKCFFCVVCHKQLSTGDEYCLLENFRPVCREDFQHI--FKEMSNILP 166

[Close]

BLAST of LIM domain only protein 3 vs. Planmine SMEST
Match: SMESG000043039.1 (SMESG000043039.1)

HSP 1 Score: 54.299 bits (129), Expect = 8.814e-8
Identity = 52/158 (32.91%), Postives = 76/158 (48.10%), Query Frame = 2

Query:  329 HLLNVFKFFSFKICNRMNSSNANFEKS-----PCCTSCQEVIAESHLLKVDNQYWHEDXXXXXXXXXXXGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRA-GSFVYHLECFGCQECNHRFCVGDK-CYLYGNRILCEADYEEI 781
            HLLN        I  ++ SS  NF K      P CTSC   I + +L  + +++WH  CLRC  C+  L E     + R   L C +DY +       C+ C  +I   +LV  +  S V+HL+CF C  C+ +   GD+ C L   R +C  D++ I
Sbjct:   11 HLLNS------PIPVKLTSSIHNFNKPFINPVPTCTSCSRPIIDRYLHNIADKFWHVQCLRCADCDIPLSE---RCFERDGKLFCSKDYRKRVS--AKCSLCLNIILPTDLVRHSRDSSVFHLKCFFCVVCHKQLSTGDEYCLLENFRPVCREDFQHI 157

The following BLAST results are available for this feature:

BLAST of LIM domain only protein 3 vs. Ensembl Human
BLAST of LIM domain only protein 3 vs. Ensembl Celegans
BLAST of LIM domain only protein 3 vs. Ensembl Fly
BLAST of LIM domain only protein 3 vs. Ensembl Zebrafish
BLAST of LIM domain only protein 3 vs. Ensembl Xenopus
BLAST of LIM domain only protein 3 vs. Ensembl Mouse
BLAST of LIM domain only protein 3 vs. UniProt/SwissProt
BLAST of LIM domain only protein 3 vs. TrEMBL
BLAST of LIM domain only protein 3 vs. Ensembl Cavefish
BLAST of LIM domain only protein 3 vs. Ensembl Sea Lamprey
BLAST of LIM domain only protein 3 vs. Ensembl Yeast
BLAST of LIM domain only protein 3 vs. Ensembl Nematostella
BLAST of LIM domain only protein 3 vs. Ensembl Medaka
BLAST of LIM domain only protein 3 vs. Planmine SMEST

BLAST of LIM domain only protein 3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
LMO1	1.360e-44	59.56	LIM domain only 1 [Source:HGNC Symbol;Acc:HGNC:664...	[more]
LMO1	1.828e-44	59.56	LIM domain only 1 [Source:HGNC Symbol;Acc:HGNC:664...	[more]
LMO1	2.016e-44	59.56	LIM domain only 1 [Source:HGNC Symbol;Acc:HGNC:664...	[more]
LMO3	2.729e-44	58.82	LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:664...	[more]
LMO3	2.729e-44	58.82	LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:664...	[more]

BLAST of LIM domain only protein 3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lim-4	7.042e-10	31.71	LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0...	[more]
lin-11	2.857e-9	29.75	pep chromosome:WBcel235:I:10248256:10255327:1 gene...	[more]
lim-4	5.469e-9	30.89	LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0...	[more]
ceh-14	2.450e-8	28.68	Homeobox protein ceh-14 [Source:UniProtKB/Swiss-P...	[more]
lim-4	9.239e-8	29.55	LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0...	[more]

BLAST of LIM domain only protein 3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Bx	9.154e-45	60.58	gene:FBgn0265598 transcript:FBtr0340364	[more]
Bx	9.154e-45	60.58	gene:FBgn0265598 transcript:FBtr0340366	[more]
Bx	2.304e-44	61.83	gene:FBgn0265598 transcript:FBtr0340363	[more]
Bx	8.277e-44	60.58	gene:FBgn0265598 transcript:FBtr0340365	[more]
Bx	8.495e-44	60.58	gene:FBgn0265598 transcript:FBtr0340367	[more]

BLAST of LIM domain only protein 3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lmo3	1.774e-44	58.82	LIM domain only 3 [Source:NCBI gene;Acc:553774]	[more]
lmo3	1.774e-44	58.82	LIM domain only 3 [Source:NCBI gene;Acc:553774]	[more]
lmo3	2.235e-44	58.82	LIM domain only 3 [Source:NCBI gene;Acc:553774]	[more]
lmo1	2.656e-44	58.82	LIM domain only 1 [Source:NCBI gene;Acc:280646]	[more]
lmo3	2.720e-44	58.82	LIM domain only 3 [Source:NCBI gene;Acc:553774]	[more]

BLAST of LIM domain only protein 3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lmo2	2.692e-31	51.56	LIM domain only 2 [Source:NCBI gene;Acc:496679]	[more]
lmo2	3.805e-31	51.56	LIM domain only 2 [Source:NCBI gene;Acc:496679]	[more]
lmo2	4.464e-31	51.56	LIM domain only 2 [Source:NCBI gene;Acc:496679]	[more]
lmo4.2	5.553e-27	41.33	LIM domain only 4, gene 2 [Source:NCBI gene;Acc:54...	[more]
lmo4.2	1.499e-26	42.57	LIM domain only 4, gene 2 [Source:NCBI gene;Acc:54...	[more]

BLAST of LIM domain only protein 3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Lmo1	1.260e-44	59.56	LIM domain only 1 [Source:MGI Symbol;Acc:MGI:10281...	[more]
Lmo3	1.874e-44	58.82	LIM domain only 3 [Source:MGI Symbol;Acc:MGI:10281...	[more]
Lmo3	1.874e-44	58.82	LIM domain only 3 [Source:MGI Symbol;Acc:MGI:10281...	[more]
Lmo3	1.874e-44	58.82	LIM domain only 3 [Source:MGI Symbol;Acc:MGI:10281...	[more]
Lmo3	1.874e-44	58.82	LIM domain only 3 [Source:MGI Symbol;Acc:MGI:10281...	[more]

BLAST of LIM domain only protein 3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q99MB5\|LMO3_RAT	5.681e-44	58.82	LIM domain only protein 3 OS=Rattus norvegicus OX=...	[more]
sp\|P25800\|RBTN1_HUMAN	8.779e-44	59.56	Rhombotin-1 OS=Homo sapiens OX=9606 GN=LMO1 PE=1 S...	[more]
sp\|Q3B8H4\|RBTN1_XENLA	1.172e-43	59.56	Rhombotin-1 OS=Xenopus laevis OX=8355 GN=lmo1 PE=2...	[more]
sp\|Q5RBW7\|LMO3_PONAB	1.311e-43	58.82	LIM domain only protein 3 OS=Pongo abelii OX=9601 ...	[more]
sp\|Q8BZL8\|LMO3_MOUSE	1.311e-43	58.82	LIM domain only protein 3 OS=Mus musculus OX=10090...	[more]

BLAST of LIM domain only protein 3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
H9IV77	7.932e-48	62.50	Uncharacterized protein OS=Bombyx mori OX=7091 PE=...	[more]
A0A194QA69	1.363e-47	60.00	Rhombotin-1 OS=Papilio xuthus OX=66420 GN=RR46_050...	[more]
Q2F5Q2	1.885e-47	62.50	Beadex/dLMO protein OS=Bombyx mori OX=7091 PE=2 SV...	[more]
A0A0L8HLK7	2.793e-47	62.86	Uncharacterized protein OS=Octopus bimaculoides OX...	[more]
A0A2A4JYF4	4.980e-47	66.17	Uncharacterized protein OS=Heliothis virescens OX=...	[more]

BLAST of LIM domain only protein 3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lmo3	1.503e-44	58.82	LIM domain only 3 [Source:NCBI gene;Acc:103033888]	[more]
lmo3	1.894e-44	58.82	LIM domain only 3 [Source:NCBI gene;Acc:103033888]	[more]
lmo1	2.201e-44	58.82	LIM domain only 1 [Source:NCBI gene;Acc:280646]	[more]
lmo3	1.434e-43	58.82	LIM domain only 3 [Source:NCBI gene;Acc:103033888]	[more]
lmo2	1.341e-28	50.79	LIM domain only 2 [Source:NCBI gene;Acc:111190647]	[more]

BLAST of LIM domain only protein 3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lmo2	2.591e-30	52.07	LIM domain only 2 (rhombotin-like 1) [Source:NCBI ...	[more]
lmo2	4.022e-30	49.23	LIM domain only 2 (rhombotin-like 1) [Source:NCBI ...	[more]
lmo4b	3.124e-25	43.70	LIM domain only 4b [Source:ZFIN;Acc:ZDB-GENE-03013...	[more]
PXN	8.273e-7	28.57	paxillin [Source:HGNC Symbol;Acc:HGNC:9718]	[more]
ENSPMAT00000002189.1	1.956e-6	39.68	pep scaffold:Pmarinus_7.0:GL483992:1961:4872:1 gen...	[more]

BLAST of LIM domain only protein 3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of LIM domain only protein 3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO48809	1.871e-46	64.84	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO37872	6.148e-38	53.23	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO37316	4.650e-26	43.90	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO43354	2.288e-14	34.88	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
LHX1	8.161e-12	36.67	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of LIM domain only protein 3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lmo3	9.284e-45	58.82	LIM domain only 3 [Source:NCBI gene;Acc:101154994]	[more]
lmo1	2.237e-44	58.82	rhombotin-1 [Source:NCBI gene;Acc:101162198]	[more]
ENSORLT00000030604.1	5.247e-39	57.94	rhombotin-1 [Source:NCBI gene;Acc:101174827]	[more]
lmo2	3.069e-29	51.59	LIM domain only 2 [Source:NCBI gene;Acc:101169199]	[more]
lmo4b	7.988e-27	42.31	LIM domain only 4 [Source:NCBI gene;Acc:101173927]	[more]

BLAST of LIM domain only protein 3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000037556.1	8.949e-100	100.00	SMESG000037556.1	[more]
SMESG000028893.1	1.766e-31	48.67	SMESG000028893.1	[more]
SMESG000071273.1	7.172e-14	39.24	SMESG000071273.1	[more]
SMESG000043039.1	1.531e-10	31.36	SMESG000043039.1	[more]
SMESG000043039.1	8.814e-8	32.91	SMESG000043039.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30023969 ID=SMED30023969|Name=LIM domain only protein 3|organism=Schmidtea mediterranea sexual|type=transcript|length=1037bp
CATGTTTACTTGTGATATTAGTTTAAGCCATCAATTCAATTAACTCCTGA
TTATTGCCCACTCTATGGAGAGCTTTAAGAAAACAATCCCATATTTTGTT
GTATTTCTAATTAATTGCTTTGAGGATTCACAATTCTCATCCAGCAGTCC
ATTTAGTAGTATTTCTCAATAATCCATTAAGAAATTTCCTTTCAAACAAA
TTAGACAGGTTTTCAAACCAGGCCTCTCTGTTGAGTTGCATTTAATAGAC
GCTGATTTCTCATTGGTCAGAAAATGAACCAATTAAATTCAAGTTCCATT
TCACTATAATTTTATTCGATATTCATTGCATTTGTTAAATGTGTTTAAAT
TTTTCAGCTTTAAAATTTGTAATCGAATGAATAGTAGCAACGCAAATTTT
GAGAAAAGTCCCTGTTGCACCAGTTGCCAAGAGGTAATTGCCGAGTCTCA
CTTGTTAAAAGTTGACAACCAATATTGGCATGAAGATTGTTTAAGATGTA
ATTGTTGTAATTGTCGCCTTGGAGAGGTCGGGTCTTCCCTTTATGCTCGA
GCGGATTTGTTACTTTGTAAACGAGATTATCTCAGAATGTTCGGTTCTAT
TGGCTATTGCAACGCTTGCGACAAAGTGATTCCAGCATTTGAGTTGGTAA
TGAGGGCGGGAAGTTTTGTGTATCATTTGGAATGCTTTGGCTGTCAAGAA
TGTAATCATAGATTTTGCGTTGGGGACAAATGTTACTTGTACGGAAACAG
AATTCTTTGCGAGGCGGATTATGAAGAGATAATGCTTTATAATAAAATCG
CAAGTCAAATCCCACTTACTGGTTCTTTCGTTTTCTGAAGTTCTGACCCG
ACAATTTCAGTGCTCTCAAGCTAACAAAATTTTCAGGAATATTTTTGATC
ATGACTGAATATATCTGTAAAGATTTTCATTCAACTCGTATTGAATAAAT
TATTGCTCGAGGAATTTTTTATTTTGTTTTAATGAATTAATATATTGGAT
AATATTGTTGTTTTGATATAAATATATCCTTTTTGAG

protein sequence of SMED30023969-orf-1

>SMED30023969-orf-1 ID=SMED30023969-orf-1|Name=SMED30023969-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=154bp
MNSSNANFEKSPCCTSCQEVIAESHLLKVDNQYWHEDCLRCNCCNCRLGE
VGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYH
LECFGCQECNHRFCVGDKCYLYGNRILCEADYEEIMLYNKIASQIPLTGS
FVF*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000014	zeta neoblast
PLANA:0000028	Category 2 cell
PLANA:0000033	epidermal progenitor cell
PLANA:0000099	neuron
PLANA:0000429	neoblast
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR001781	Znf_LIM

Vocabulary: **molecular function**
Term	Definition
GO:0008270	zinc ion binding
GO:0046872	metal ion binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 13..67 e-value: 2.9E-10 score: 50.1 coord: 77..131 e-value: 6.5E-10 score: 48.9
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 14..72 e-value: 2.5E-12 score: 46.8 coord: 78..134 e-value: 1.6E-11 score: 44.2
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 78..113
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 14..48
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 12..74 score: 13.217
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 76..138 score: 12.177
None	No IPR available	GENE3D	G3DSA:2.10.110.10		coord: 71..145 e-value: 2.4E-18 score: 68.6
None	No IPR available	GENE3D	G3DSA:2.10.110.10		coord: 1..70 e-value: 6.4E-16 score: 60.0
None	No IPR available	PANTHER	PTHR45787	FAMILY NOT NAMED	coord: 3..143
None	No IPR available	PANTHER	PTHR45787:SF6	BEADEX, ISOFORM D	coord: 3..143
None	No IPR available	SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 39..71
None	No IPR available	SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 9..39
None	No IPR available	SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 76..104

Main menu

LIM domain only protein 3

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 14

Owlery

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