Pogo transposable element with ZNF domain
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30023910 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of Pogo transposable element with ZNF domain vs. TrEMBL
Match: A0A2Z3D3W2 (Factor for initiating regeneration 1 OS=Schmidtea mediterranea OX=79327 GN=Fir1 PE=2 SV=1) HSP 1 Score: 441.039 bits (1133), Expect = 5.724e-148 Identity = 209/213 (98.12%), Postives = 209/213 (98.12%), Query Frame = 3 Query: 27 MDFGSSMFYSRQXPXFAFPSISLSMICXDEPLSEVQFKSYKTRLQEYKNYLDSVNRLANCVNVCITEEPVSIGETGLLTGEALNALQHAGSISVYNFFQQHNWEYPSNPEGEMAVVRPHNPVADEFLDSEQPIRPDWPSVHLTKCFVDQDKAKLHGSALPLRNYLPPTISFRNAADVDDAIEPEPRPSKQMLSQEGDFEIVSTEQGIMVQKYV 665 MDFGSSMFYSRQ FAFPSISLSMIC DEPLSEVQFKSYKTRLQEYKNYLDSVNRLANCVNVCITEEPVSIGETGLLTGEALNALQHAGSISVYNFFQQHNWEYPSNPEGEMAVVRPHNPVADEFLDSEQPIRPDWPSVHLTKCFVDQDKAKLHGSALPLRNYLPPTISFRNAADVDDAIEPEPRPSKQMLSQEGDFEIVSTEQGIMVQKYV Sbjct: 1 MDFGSSMFYSRQDRNFAFPSISLSMICHDEPLSEVQFKSYKTRLQEYKNYLDSVNRLANCVNVCITEEPVSIGETGLLTGEALNALQHAGSISVYNFFQQHNWEYPSNPEGEMAVVRPHNPVADEFLDSEQPIRPDWPSVHLTKCFVDQDKAKLHGSALPLRNYLPPTISFRNAADVDDAIEPEPRPSKQMLSQEGDFEIVSTEQGIMVQKYV 213
BLAST of Pogo transposable element with ZNF domain vs. TrEMBL
Match: A0A3P6QL59 (Uncharacterized protein OS=Dibothriocephalus latus OX=60516 GN=DILT_LOCUS291 PE=4 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 8.299e-80 Identity = 115/191 (60.21%), Postives = 148/191 (77.49%), Query Frame = 3 Query: 90 SLSMICXDEPLSEVQFKSYKTRLQEYKNYLDSVNRLANCVNVCITEEPVSIGETGLLTGEALNALQHAGSISVYNFFQQHNWEYPSNPEGEMAVVRPHNPVADEFLDSEQPIRPDWPSVHLTKCFVDQDKAKLHGSALPLRNYLPPTISFRNAADVDDAIEPEPR-PSKQMLSQEGDFEIVSTEQGIMVQK 659 +L+++C DE LS+ Q K+Y+TRLQEY+ +L++V+RLANC NVCITEE V IGE GLLTGE+LNALQHAG+ISVYN QQ+NWE+P EGE V++ H + DEFLD E+PIR DWPS+H+++CFV+ +KAKLHGS PLR +LPP+I FRNAAD+DD + PEP P E EIVST +G+ V+K Sbjct: 85 TLALLCEDESLSDAQLKAYQTRLQEYQTFLEAVSRLANCGNVCITEEAVMIGENGLLTGESLNALQHAGAISVYNTLQQNNWEFPVPEEGEAVVIKTHTTMPDEFLDQEKPIRSDWPSIHISECFVEGEKAKLHGSVRPLRTFLPPSIVFRNAADIDDDM-PEPEIPVSNSTGIEAGLEIVSTSEGLAVRK 274
BLAST of Pogo transposable element with ZNF domain vs. TrEMBL
Match: G4VE17 (Putative suppressor of hairy wing homolog OS=Schistosoma mansoni OX=6183 GN=Smp_021950.1 PE=4 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 1.431e-79 Identity = 117/190 (61.58%), Postives = 153/190 (80.53%), Query Frame = 3 Query: 90 SLSMICXDEPLSEVQFKSYKTRLQEYKNYLDSVNRLANCVNVCITEEPVSIGETGLLTGEALNALQHAGSISVYNFFQQHNWEYPSNPEGEMAVVRPHNPVADEFLDSEQPIRPDWPSVHLTKCFVDQDKAKLHGSALPLRNYLPPTISFRNAADVDDAIEPEPRPSKQMLSQEGDFEIVSTEQGIMVQK 659 +LS+IC DE LS+ Q K+Y+TRLQEY+ +LD+V+RLA C NVC+TEE V+IGE GLLTGE+LNALQHAG+ISVYN QQ+NWE+P + EGE+A+V+ H P+ DEFLDSE+PIR DWP+VH+++CFV+ ++AKLHGS PLR +LPPTI FRNAADVD+ + PEP + EG EIV + +G+ V+K Sbjct: 21 TLSLICDDESLSDAQLKAYQTRLQEYRTFLDAVSRLALCSNVCVTEEAVTIGEHGLLTGESLNALQHAGAISVYNTLQQNNWEFPISEEGEVAIVKAHVPIPDEFLDSEKPIRSDWPAVHISECFVEGERAKLHGSVRPLRTFLPPTIVFRNAADVDEDV-PEPEVNIINSGPEGSIEIVQSLKGLSVKK 209
BLAST of Pogo transposable element with ZNF domain vs. TrEMBL
Match: A0A183VR92 (Uncharacterized protein OS=Trichobilharzia regenti OX=157069 GN=TRE_LOCUS2998 PE=4 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 1.152e-78 Identity = 117/190 (61.58%), Postives = 152/190 (80.00%), Query Frame = 3 Query: 90 SLSMICXDEPLSEVQFKSYKTRLQEYKNYLDSVNRLANCVNVCITEEPVSIGETGLLTGEALNALQHAGSISVYNFFQQHNWEYPSNPEGEMAVVRPHNPVADEFLDSEQPIRPDWPSVHLTKCFVDQDKAKLHGSALPLRNYLPPTISFRNAADVDDAIEPEPRPSKQMLSQEGDFEIVSTEQGIMVQK 659 +LS+IC DEPLS+ Q K+Y+TRLQEY+ +LD+V+RLA C NVC+TEE V+IGE GLLTGE+LNALQHAG+ISVYN QQ+NWE+P + EGE+A+V+ H P+ DEFLDSE+PIR DWP+VH+++CFV+ ++AKLHGS PLR +LPPTI FRNAADVD+ + EP + EG EIV + G+ V+K Sbjct: 21 TLSLICDDEPLSDAQLKAYQTRLQEYRTFLDAVSRLALCGNVCVTEEAVTIGEHGLLTGESLNALQHAGAISVYNTLQQNNWEFPISEEGEVAIVKAHVPIPDEFLDSEKPIRSDWPAVHISECFVEGERAKLHGSVRPLRTFLPPTIVFRNAADVDEDV-AEPEVNIINSGPEGSIEIVQSSHGLSVKK 209
BLAST of Pogo transposable element with ZNF domain vs. TrEMBL
Match: A0A4E0R5K4 (Suppressor of hairy wing OS=Fasciola hepatica OX=6192 GN=D915_006654 PE=4 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 3.505e-78 Identity = 115/193 (59.59%), Postives = 155/193 (80.31%), Query Frame = 3 Query: 90 SLSMICXDEPLSEVQFKSYKTRLQEYKNYLDSVNRLANCVNVCITEEPVSIGETGLLTGEALNALQHAGSISVYNFFQQHNWEYPSNPEGEMAVVRPHNPVADEFLDSEQPIRPDWPSVHLTKCFVDQDKAKLHGSALPLRNYLPPTISFRNAADVDDAIEPEPR---PSKQMLSQEGDFEIVSTEQGIMVQK 659 +LS++C DEPLS+ Q K+Y+TRLQEY+ +LD+V+RLA C NVC+TEE V+IGE GLLTGE+LNALQHAG+ISVYN QQ+NWE+ +GE+AV++ HNP+ DEFLDSE+PIR DWP++H+++CFVD ++AK+HGS PLR +LPPT+ FRNAADVD+ I PEP PS + +G E+V + +GI V++ Sbjct: 17 TLSLLCDDEPLSDAQLKAYQTRLQEYRTFLDAVSRLALCGNVCVTEEAVTIGEHGLLTGESLNALQHAGAISVYNTLQQNNWEFSIAEDGEVAVIKTHNPIPDEFLDSEKPIRSDWPAIHISECFVDGERAKIHGSVRPLRTFLPPTVVFRNAADVDEDI-PEPELNVPSTS--NNDGTVELVPSAKGITVKR 206
BLAST of Pogo transposable element with ZNF domain vs. Planmine SMEST
Match: SMESG000014324.1 (SMESG000014324.1) HSP 1 Score: 428.713 bits (1101), Expect = 7.686e-147 Identity = 203/207 (98.07%), Postives = 203/207 (98.07%), Query Frame = 3 Query: 45 MFYSRQXPXFAFPSISLSMICXDEPLSEVQFKSYKTRLQEYKNYLDSVNRLANCVNVCITEEPVSIGETGLLTGEALNALQHAGSISVYNFFQQHNWEYPSNPEGEMAVVRPHNPVADEFLDSEQPIRPDWPSVHLTKCFVDQDKAKLHGSALPLRNYLPPTISFRNAADVDDAIEPEPRPSKQMLSQEGDFEIVSTEQGIMVQKYV 665 MFYSRQ FAFPSISLSMIC DEPLSEVQFKSYKTRLQEYKNYLDSVNRLANCVNVCITEEPVSIGETGLLTGEALNALQHAGSISVYNFFQQHNWEYPSNPEGEMAVVRPHNPVADEFLDSEQPIRPDWPSVHLTKCFVDQDKAKLHGSALPLRNYLPPTISFRNAADVDDAIEPEPRPSKQMLSQEGDFEIVSTEQGIMVQKYV Sbjct: 1 MFYSRQDRNFAFPSISLSMICHDEPLSEVQFKSYKTRLQEYKNYLDSVNRLANCVNVCITEEPVSIGETGLLTGEALNALQHAGSISVYNFFQQHNWEYPSNPEGEMAVVRPHNPVADEFLDSEQPIRPDWPSVHLTKCFVDQDKAKLHGSALPLRNYLPPTISFRNAADVDDAIEPEPRPSKQMLSQEGDFEIVSTEQGIMVQKYV 207
BLAST of Pogo transposable element with ZNF domain vs. Planmine SMEST
Match: SMESG000014324.1 (SMESG000014324.1) HSP 1 Score: 399.823 bits (1026), Expect = 1.076e-135 Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 3 Query: 99 MICXDEPLSEVQFKSYKTRLQEYKNYLDSVNRLANCVNVCITEEPVSIGETGLLTGEALNALQHAGSISVYNFFQQHNWEYPSNPEGEMAVVRPHNPVADEFLDSEQPIRPDWPSVHLTKCFVDQDKAKLHGSALPLRNYLPPTISFRNAADVDDAIEPEPRPSKQMLSQEGDFEIVSTEQGIMVQKYV 665 MIC DEPLSEVQFKSYKTRLQEYKNYLDSVNRLANCVNVCITEEPVSIGETGLLTGEALNALQHAGSISVYNFFQQHNWEYPSNPEGEMAVVRPHNPVADEFLDSEQPIRPDWPSVHLTKCFVDQDKAKLHGSALPLRNYLPPTISFRNAADVDDAIEPEPRPSKQMLSQEGDFEIVSTEQGIMVQKYV Sbjct: 1 MICHDEPLSEVQFKSYKTRLQEYKNYLDSVNRLANCVNVCITEEPVSIGETGLLTGEALNALQHAGSISVYNFFQQHNWEYPSNPEGEMAVVRPHNPVADEFLDSEQPIRPDWPSVHLTKCFVDQDKAKLHGSALPLRNYLPPTISFRNAADVDDAIEPEPRPSKQMLSQEGDFEIVSTEQGIMVQKYV 189 The following BLAST results are available for this feature:
BLAST of Pogo transposable element with ZNF domain vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Pogo transposable element with ZNF domain vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Pogo transposable element with ZNF domain vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Pogo transposable element with ZNF domain vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Pogo transposable element with ZNF domain vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Pogo transposable element with ZNF domain vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Pogo transposable element with ZNF domain vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Pogo transposable element with ZNF domain vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Pogo transposable element with ZNF domain vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Pogo transposable element with ZNF domain vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Pogo transposable element with ZNF domain vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Pogo transposable element with ZNF domain vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Pogo transposable element with ZNF domain vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Pogo transposable element with ZNF domain vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30023910 ID=SMED30023910|Name=Pogo transposable element with ZNF domain|organism=Schmidtea mediterranea sexual|type=transcript|length=682bpback to top protein sequence of SMED30023910-orf-1 >SMED30023910-orf-1 ID=SMED30023910-orf-1|Name=SMED30023910-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=226bp GYXLYKSYMDFGSSMFYSRQXXXFAFPSISLSMICXDEPLSEVQFKSYKTback to top Annotated Terms
The following terms have been associated with this transcript:
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