LITAF domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30023825 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 14
Homology
BLAST of LITAF domain-containing protein vs. Ensembl Human
Match: CDIP1 (cell death inducing p53 target 1 [Source:HGNC Symbol;Acc:HGNC:13234]) HSP 1 Score: 49.2914 bits (116), Expect = 2.271e-7 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I T I Y+ GL+ ++L +GC LGCCLIP ++D KDV H CPSC + ++R+ Sbjct: 48 VLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRL 128
BLAST of LITAF domain-containing protein vs. Ensembl Human
Match: CDIP1 (cell death inducing p53 target 1 [Source:HGNC Symbol;Acc:HGNC:13234]) HSP 1 Score: 49.2914 bits (116), Expect = 2.271e-7 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I T I Y+ GL+ ++L +GC LGCCLIP ++D KDV H CPSC + ++R+ Sbjct: 48 VLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRL 128
BLAST of LITAF domain-containing protein vs. Ensembl Human
Match: CDIP1 (cell death inducing p53 target 1 [Source:HGNC Symbol;Acc:HGNC:13234]) HSP 1 Score: 48.9062 bits (115), Expect = 5.803e-7 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I T I Y+ GL+ ++L +GC LGCCLIP ++D KDV H CPSC + ++R+ Sbjct: 88 VLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRL 168
BLAST of LITAF domain-containing protein vs. Ensembl Human
Match: CDIP1 (cell death inducing p53 target 1 [Source:HGNC Symbol;Acc:HGNC:13234]) HSP 1 Score: 48.9062 bits (115), Expect = 5.803e-7 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I T I Y+ GL+ ++L +GC LGCCLIP ++D KDV H CPSC + ++R+ Sbjct: 88 VLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRL 168
BLAST of LITAF domain-containing protein vs. Ensembl Human
Match: CDIP1 (cell death inducing p53 target 1 [Source:HGNC Symbol;Acc:HGNC:13234]) HSP 1 Score: 48.9062 bits (115), Expect = 8.570e-7 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I T I Y+ GL+ ++L +GC LGCCLIP ++D KDV H CPSC + ++R+ Sbjct: 127 VLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRL 207
BLAST of LITAF domain-containing protein vs. Ensembl Zebrafish
Match: cdip1 (cell death-inducing p53 target 1 [Source:ZFIN;Acc:ZDB-GENE-070720-18]) HSP 1 Score: 47.3654 bits (111), Expect = 2.357e-6 Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I+T I +D GL+ L+C +GC LGCCLIP +DD KDV H CP+C + ++R+ Sbjct: 132 VLQGEMFQSAPVQTVCPHCQQPIITRISHDIGLMNTLVCMFCFFVGCDLGCCLIPCLIDDLKDVTHTCPNCKGYIYTYKRI 212
BLAST of LITAF domain-containing protein vs. Ensembl Zebrafish
Match: cdip1 (cell death-inducing p53 target 1 [Source:ZFIN;Acc:ZDB-GENE-070720-18]) HSP 1 Score: 47.3654 bits (111), Expect = 2.357e-6 Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I+T I +D GL+ L+C +GC LGCCLIP +DD KDV H CP+C + ++R+ Sbjct: 132 VLQGEMFQSAPVQTVCPHCQQPIITRISHDIGLMNTLVCMFCFFVGCDLGCCLIPCLIDDLKDVTHTCPNCKGYIYTYKRI 212
BLAST of LITAF domain-containing protein vs. Ensembl Zebrafish
Match: litaf (lipopolysaccharide-induced TNF factor [Source:NCBI gene;Acc:431731]) HSP 1 Score: 46.2098 bits (108), Expect = 3.133e-6 Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 2 Query: 224 VYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRR 448 V+G +PV CP C ++T + Y +G L WL C GLA+ GC GCCLIPFC++D KDV H CP+C+ +G H+R Sbjct: 88 VFGNVPVQAHCPVCSQSVITRLEYSSGPLVWLSCAGLAVFGCIYGCCLIPFCIEDLKDVTHHCPNCSSVLGVHKR 162
BLAST of LITAF domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000031517.1 (LITAF domain containing [Source:NCBI gene;Acc:100498168]) HSP 1 Score: 49.6766 bits (117), Expect = 1.823e-7 Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 2 Query: 239 PVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 P +T CP C+ I+T I Y+ GLLTWLL G L + GCWLGCCLIPFCVD CKDV H CP+CN + +++R+ Sbjct: 71 PASTTCPSCRQNIITNIHYNIGLLTWLLFGILFIFGCWLGCCLIPFCVDSCKDVDHYCPNCNHHLYKYKRL 141
BLAST of LITAF domain-containing protein vs. Ensembl Mouse
Match: Cdip1 (cell death inducing Trp53 target 1 [Source:MGI Symbol;Acc:MGI:1913876]) HSP 1 Score: 48.521 bits (114), Expect = 9.281e-7 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I T I Y+ GL+ ++L +GC LGCCLIP ++D KDV H CPSC + ++R+ Sbjct: 110 VLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYICTYKRL 190
BLAST of LITAF domain-containing protein vs. Ensembl Mouse
Match: Cdip1 (cell death inducing Trp53 target 1 [Source:MGI Symbol;Acc:MGI:1913876]) HSP 1 Score: 48.521 bits (114), Expect = 1.024e-6 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I T I Y+ GL+ ++L +GC LGCCLIP ++D KDV H CPSC + ++R+ Sbjct: 127 VLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYICTYKRL 207
BLAST of LITAF domain-containing protein vs. Ensembl Mouse
Match: Cdip1 (cell death inducing Trp53 target 1 [Source:MGI Symbol;Acc:MGI:1913876]) HSP 1 Score: 48.521 bits (114), Expect = 1.024e-6 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I T I Y+ GL+ ++L +GC LGCCLIP ++D KDV H CPSC + ++R+ Sbjct: 127 VLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYICTYKRL 207
BLAST of LITAF domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9H305|CDIP1_HUMAN (Cell death-inducing p53-target protein 1 OS=Homo sapiens OX=9606 GN=CDIP1 PE=1 SV=1) HSP 1 Score: 48.9062 bits (115), Expect = 4.116e-6 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I T I Y+ GL+ ++L +GC LGCCLIP ++D KDV H CPSC + ++R+ Sbjct: 127 VLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRL 207
BLAST of LITAF domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9DB75|CDIP1_MOUSE (Cell death-inducing p53-target protein 1 OS=Mus musculus OX=10090 GN=Cdip1 PE=2 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 7.161e-6 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I T I Y+ GL+ ++L +GC LGCCLIP ++D KDV H CPSC + ++R+ Sbjct: 127 VLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYICTYKRL 207
BLAST of LITAF domain-containing protein vs. UniProt/SwissProt
Match: sp|Q58D45|CDIP1_BOVIN (Cell death-inducing p53-target protein 1 OS=Bos taurus OX=9913 GN=CDIP1 PE=2 SV=1) HSP 1 Score: 48.1358 bits (113), Expect = 7.739e-6 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I T I Y+ GL+ ++L +GC LGCCLIP ++D KDV H CPSC + ++R+ Sbjct: 127 VLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRL 207
BLAST of LITAF domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5U2U6|CDIP1_RAT (Cell death-inducing p53-target protein 1 OS=Rattus norvegicus OX=10116 GN=Cdip1 PE=2 SV=1) HSP 1 Score: 48.1358 bits (113), Expect = 9.959e-6 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I T I Y+ GL+ ++L +GC LGCCLIP ++D KDV H CPSC + ++R+ Sbjct: 127 VLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYICTYKRL 207
BLAST of LITAF domain-containing protein vs. TrEMBL
Match: A0A2B4RVD9 (Lipopolysaccharide-induced tumor necrosis factor-alpha factor-like OS=Stylophora pistillata OX=50429 GN=LITAF PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 5.761e-10 Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 II N +G PV+ VCPHCQ I+T Y +G LTWL G L LLGCWLGCCLIPFC+D CKDVIH CP+C+ ++G +RR+ Sbjct: 67 IIVNMAFGESPVSMVCPHCQTHIITCTTYQDGTLTWLSAGALFLLGCWLGCCLIPFCLDGCKDVIHSCPNCHARLGSYRRM 147
BLAST of LITAF domain-containing protein vs. TrEMBL
Match: A0A3M6UJR4 (LITAF domain-containing protein OS=Pocillopora damicornis OX=46731 GN=pdam_00000257 PE=4 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.133e-9 Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 2 Query: 218 NQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 N ++G PV+ VCPHCQ I+T Y +G LTWL G L LLGCWLGCCLIPFC+D CKDVIH CP+C+ ++G +RR+ Sbjct: 67 NMIFGESPVSMVCPHCQTHIITCTTYQDGTLTWLSAGALCLLGCWLGCCLIPFCLDGCKDVIHSCPNCHARLGSYRRM 144
BLAST of LITAF domain-containing protein vs. TrEMBL
Match: A0A194ANP1 (LITAF domain-containing protein OS=Pinctada fucata OX=50426 PE=4 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 1.114e-8 Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 2 Query: 212 IQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++N ++ +PV T CP CQA I T Y+ G +TWL+ G L L+G WLGCCLIPFC+D CKDVIH CP+CN VG++ R+ Sbjct: 47 LRNMMFREVPVATQCPFCQATITTSTSYETGTITWLVAGILLLMGLWLGCCLIPFCLDGCKDVIHRCPNCNQVVGKYTRM 126
BLAST of LITAF domain-containing protein vs. TrEMBL
Match: A0A4E0QUK4 (Lipopolysaccharide induced TNF alpha factor OS=Fasciola hepatica OX=6192 GN=D915_009150 PE=4 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 1.534e-8 Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 2 Query: 224 VYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 +G +P C HC Q+VT + Y G LTWLLC + L C LIPFCVDDCKD +H CP CNM +G +RR+ Sbjct: 61 TFGPVPTAAYCAHCNQQVVTEVHYVTGALTWLLCAIIFFFTGPLFCFLIPFCVDDCKDAVHSCPRCNMTLGTYRRL 136
BLAST of LITAF domain-containing protein vs. TrEMBL
Match: V3ZDL5 (LITAF domain-containing protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_183210 PE=4 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 3.309e-8 Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 2 Query: 239 PVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 PV+T CPHCQA+IVT Y+ G L W++C L +G GCCLIPFCVD CKDVIH CP+C + + R+ Sbjct: 11 PVHTKCPHCQAEIVTATHYETGTLAWIICVVLCFVGLGFGCCLIPFCVDACKDVIHSCPNCRQTISRYSRM 81
BLAST of LITAF domain-containing protein vs. Ensembl Cavefish
Match: cdip1 (cell death inducing p53 target 1 [Source:NCBI gene;Acc:103033134]) HSP 1 Score: 47.7506 bits (112), Expect = 1.322e-6 Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ I+T I +D GL+ L C +GC LGCCLIP +DD KDV H CP+C + ++R+ Sbjct: 131 VLQGEMFQSAPVQTVCPHCQQAIITRISHDVGLMNTLFCLFCFFVGCDLGCCLIPCLIDDLKDVTHTCPNCKGYIYTYKRI 211
BLAST of LITAF domain-containing protein vs. Ensembl Cavefish
Match: litaf (lipopolysaccharide-induced TNF factor [Source:NCBI gene;Acc:431731]) HSP 1 Score: 45.4394 bits (106), Expect = 4.769e-6 Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 2 Query: 218 NQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 V+G PV CP+C +VT + Y +G +TWL C GL + GC GCCLIPFCVD KDV H CP+C+ +G +R+ Sbjct: 75 GMVFGHTPVQVHCPNCAQTVVTRLDYSSGTMTWLTCAGLFIFGCIYGCCLIPFCVDSLKDVTHHCPNCSSVLGVFKRL 152
BLAST of LITAF domain-containing protein vs. Ensembl Nematostella
Match: EDO37753 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SES1]) HSP 1 Score: 51.6026 bits (122), Expect = 2.103e-9 Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 2 Query: 251 VCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 VC CQ IVT Y G LTWLL GG+ LLG WLGCCLIPFC+D CKDVIH CP+C ++G +RR+ Sbjct: 2 VCSFCQTHIVTATTYRYGALTWLLSGGICLLGGWLGCCLIPFCLDGCKDVIHTCPNCQAQLGVYRRL 68
BLAST of LITAF domain-containing protein vs. Ensembl Nematostella
Match: EDO33373 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSF9]) HSP 1 Score: 48.1358 bits (113), Expect = 8.620e-8 Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 2 Query: 239 PVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 PV+ CP C A IVT Y G LTWL C GL ++GC LGCC IPFCVD KDV+H CP+C +VG RR+ Sbjct: 33 PVSMNCPTCHATIVTATDYVTGTLTWLACFGLCIIGCDLGCCFIPFCVDSMKDVVHTCPNCRSQVGVFRRM 103
BLAST of LITAF domain-containing protein vs. Ensembl Nematostella
Match: EDO42963 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S062]) HSP 1 Score: 45.4394 bits (106), Expect = 8.362e-7 Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 2 Query: 227 YGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 +G P + VCP+CQA IVT Y T L + + CC +PF +D CKDV+H CP+C +VG R+ Sbjct: 33 FGESPTSMVCPYCQATIVTATSY--VPGTCAWLICLVIFCFFWPCCFLPFVLDGCKDVVHSCPNCQRQVGVFTRL 105
BLAST of LITAF domain-containing protein vs. Ensembl Medaka
Match: cdip1 (cell death inducing p53 target 1 [Source:NCBI gene;Acc:101173632]) HSP 1 Score: 47.3654 bits (111), Expect = 1.726e-6 Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 2 Query: 209 IIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 ++Q +++ PV TVCPHCQ IVT I +D GL+ L C +GC LGCCLIP +DD KDV H CP C + ++R+ Sbjct: 124 VLQGEMFQTSPVQTVCPHCQQAIVTRISHDVGLMNTLFCLFCFFVGCDLGCCLIPCLIDDLKDVTHTCPYCKGYIYTYKRI 204
BLAST of LITAF domain-containing protein vs. Planmine SMEST
Match: SMESG000020853.1 (SMESG000020853.1) HSP 1 Score: 129.028 bits (323), Expect = 2.077e-38 Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 2 Query: 68 MNSDNQPKNYENTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 MNSDNQPKNYENTAPPPYPQNAPYPQAGQYQ GQPVQTGQPQVVYQTIIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNGLLTWLLCGGLALLGCWLGCCLIPFCVDDCKDVIHVCPSCNMKVGEHRRV Sbjct: 1 MNSDNQPKNYENTAPPPYPQNAPYPQAGQYQAGQPVQTGQPQVVYQTIIQNQVYGCLPVNTVCPHCQAQIVTGIRYDNGLLTWLLCGGLALLGCWLGCCLIPFCVDDCKDVIHVCPSCNMKVGEHRRV 128
BLAST of LITAF domain-containing protein vs. Planmine SMEST
Match: SMESG000079265.1 (SMESG000079265.1) HSP 1 Score: 59.3066 bits (142), Expect = 4.846e-12 Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 2 Query: 236 LPVNTVCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 +PV+ VCPHC + IVT +RYDNG LT+LL +GC GCCLIPF V KDV H CP CN +GE+RR+ Sbjct: 1 MPVSMVCPHCNSTIVTTVRYDNGTLTFLLAFITCFIGCVCGCCLIPFFVKQFKDVKHYCPRCNALLGEYRRI 72
BLAST of LITAF domain-containing protein vs. Planmine SMEST
Match: SMESG000079265.1 (SMESG000079265.1) HSP 1 Score: 54.299 bits (129), Expect = 3.468e-10 Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 2 Query: 251 VCPHCQAQIVTGIRYDNXXXXXXXXXXXXXXXXXXXXXXIPFCVDDCKDVIHVCPSCNMKVGEHRRV 451 VCPHC + IVT +RYDNG LT+LL +GC GCCLIPF V KDV H CP CN +GE+RR+ Sbjct: 2 VCPHCNSTIVTTVRYDNGTLTFLLAFITCFIGCVCGCCLIPFFVKQFKDVKHYCPRCNALLGEYRRI 68 The following BLAST results are available for this feature:
BLAST of LITAF domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of LITAF domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of LITAF domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of LITAF domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of LITAF domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of LITAF domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 3
BLAST of LITAF domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 4
BLAST of LITAF domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of LITAF domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of LITAF domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of LITAF domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of LITAF domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 3
BLAST of LITAF domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of LITAF domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30023825 ID=SMED30023825|Name=LITAF domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=600bpback to top protein sequence of SMED30023825-orf-1 >SMED30023825-orf-1 ID=SMED30023825-orf-1|Name=SMED30023825-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=129bp MNSDNQPKNYENTAPPPYPQNAPYPQAGQYQTGQPVQTGQPQVVYQTIIQback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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