BZIP domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30023819 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of BZIP domain-containing protein vs. TrEMBL
Match: A0A095AU41 (BZIP domain-containing protein OS=Schistosoma haematobium OX=6185 GN=MS3_06370 PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 2.470e-6 Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 3 Query: 723 FGKTYENGRRNLKGEEVSQXXXXXXXXXXXXXXXXXXKCRKRRQDKIETLQERVSKLKEELDMLNSNIEFNSSEQLKLNTIIASHK 980 GKT+ENGRR+LK E VS +EA RRAKRRERNR+AAAKCR+RRQD+IE LQ RV L L S++ E+ +L +++ HK Sbjct: 574 MGKTFENGRRSLKEEPVSDDEARRRAKRRERNRVAAAKCRQRRQDQIEELQHRVDALTRTGQELRSSLHSLDLERARLESLVEEHK 659
BLAST of BZIP domain-containing protein vs. TrEMBL
Match: A0A5K4F7Y4 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 2.711e-6 Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 3 Query: 723 FGKTYENGRRNLKGEEVSQXXXXXXXXXXXXXXXXXXKCRKRRQDKIETLQERVSKLKEELDMLNSNIEFNSSEQLKLNTIIASHK 980 GKT+ENGRR+LK E VS +EA RRAKRRERNR+AAAKCR+RRQD+IE LQ RV L L S++ E+ +L +++ HK Sbjct: 573 MGKTFENGRRSLKEEPVSDDEARRRAKRRERNRVAAAKCRQRRQDQIEELQHRVDALTRTGQELRSSLHSLDLERARLESLVEEHK 658
BLAST of BZIP domain-containing protein vs. TrEMBL
Match: G4LXW5 (Fos transcription factor-related OS=Schistosoma mansoni OX=6183 GN=Smp_170130 PE=4 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 4.338e-6 Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 3 Query: 723 FGKTYENGRRNLKGEEVSQXXXXXXXXXXXXXXXXXXKCRKRRQDKIETLQERVSKLKEELDMLNSNIEFNSSEQLKLNTIIASHK 980 GKT+ENGRR+LK E VS +EA RRAKRRERNR+AAAKCR+RRQD+IE LQ RV L L S++ E+ +L +++ HK Sbjct: 357 MGKTFENGRRSLKEEPVSDDEARRRAKRRERNRVAAAKCRQRRQDQIEELQHRVDALTRTGQELRSSLHSLDLERARLESLVEEHK 442
BLAST of BZIP domain-containing protein vs. TrEMBL
Match: I1ZI60 (Fos-1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 4.567e-6 Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 3 Query: 648 DIDVFPPSRTISPTSSNISIQSRNKFGKTYENGRRNLKGEEVSQXXXXXXXXXXXXXXXXXXKCRKRRQDKIETLQERVSKLKEELDMLNSNIEFNSSEQLKLNTIIASHKCNLQENHNSNNG 1016 ++D+ S ++ T ++ G TYENGRRNLK E VS EE RRAKRRERNR+AAAKCR+RRQ +++ LQ +V L+ L S ++ +E+++L + +++H C + E SNNG Sbjct: 17 ELDIVVKSEPVTATKPFLNSHRTKNRGLTYENGRRNLKAERVSVEEMDRRAKRRERNRIAAAKCRERRQFQLDELQHQVEMLRSTEFNLQSTLKQLEAEEVELRSKLSNHNCVITE---SNNG 136
BLAST of BZIP domain-containing protein vs. Ensembl Sea Lamprey
Match: FOSL1 (FOS like 1, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:13718]) HSP 1 Score: 47.3654 bits (111), Expect = 7.676e-6 Identity = 30/100 (30.00%), Postives = 48/100 (48.00%), Query Frame = 3 Query: 834 KCRKRRQDKIETLQERVSKLKEELDMLNSNIEFNSSEQLKLNTIIASHK--CNLQENHNSNNGSQNG-------PAVRPKSLKFDNITNDTQESSSNSNN 1106 KCR RR++ ETL+ +KL E + +++E E+ +L ++A+H+ C LQ + N S N PA RP SL + + S S + Sbjct: 100 KCRNRRRELTETLEAETAKLAAEQSAIRADLERLQKERDELELVLAAHEPTCRLQHEPDQNVPSANSPRLSPGLPAPRPASLPLPPLQLKQEPPSPPSEH 199
BLAST of BZIP domain-containing protein vs. Planmine SMEST
Match: SMESG000057821.1 (SMESG000057821.1) HSP 1 Score: 506.138 bits (1302), Expect = 5.694e-175 Identity = 341/357 (95.52%), Postives = 341/357 (95.52%), Query Frame = 3 Query: 408 MTNKAFTEGELRNWVLSLPPDSIKSLEEALKSIRDNHFNSIEVRIIDFYQNSKMTSFQCNAXXXXXXXXXXXXXXXXXXXDIDVFPPSRTISPTSSNISIQSRNKFGKTYENGRRNLKGEEVSQXXXXXXXXXXXXXXXXXXKCRKRRQDKIETLQERVSKLKEELDMLNSNIEFNSSEQLKLNTIIASHKCNLQENHNSNNGSQNGPAVRPKSLKFDNITNDTQESSSNSNNVFICXXXXXXXXXXXXXXXXTMKLVLDSINNHQLDSSTPTSLLKDESSQITIDSSTFLSSVTTPSQTFSRXXXXXXXXXXXXXXXXXXXFSSPSLKIAATIASTISSNTYSNHILSDHIKQEDE 1478 MTNKAFTEGELRNWVLSLPPDSIKSLEEALKSIRDNHFNSIE CNASNSSREEKNSIKEKSEIREDIDVFPPSRTISPTSSNISIQSRNKFGKTYENGRRNLKGEEVSQEEATRRAKRRERNRLAAAKCRKRRQDKIETLQERVSKLKEELDMLNSNIEFNSSEQLKLNTIIASHKCNLQENHNSNNGSQNGPAVRPKSLKFDNITNDTQESSSNSNNVFICSLSPQLISLSPLLTPSTMKLVLDSINNHQLDSSTPTSLLKDESSQITIDSSTFLSSVTTPSQTFSRSLSLLNLMSPNSDLLNMNLFSSPSLKIAATIASTISSNTYSNHILSDHIKQEDE Sbjct: 1 MTNKAFTEGELRNWVLSLPPDSIKSLEEALKSIRDNHFNSIE----------------CNASNSSREEKNSIKEKSEIREDIDVFPPSRTISPTSSNISIQSRNKFGKTYENGRRNLKGEEVSQEEATRRAKRRERNRLAAAKCRKRRQDKIETLQERVSKLKEELDMLNSNIEFNSSEQLKLNTIIASHKCNLQENHNSNNGSQNGPAVRPKSLKFDNITNDTQESSSNSNNVFICSLSPQLISLSPLLTPSTMKLVLDSINNHQLDSSTPTSLLKDESSQITIDSSTFLSSVTTPSQTFSRSLSLLNLMSPNSDLLNMNLFSSPSLKIAATIASTISSNTYSNHILSDHIKQEDE 341
BLAST of BZIP domain-containing protein vs. Planmine SMEST
Match: SMESG000003328.1 (SMESG000003328.1) HSP 1 Score: 60.8474 bits (146), Expect = 1.509e-9 Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 3 Query: 648 DIDVFPPSRTISPTSSNISIQSRNKFGKTYENGRRNLKGEEVSQXXXXXXXXXXXXXXXXXXKCRKRRQDKIETLQERVSKLKEELDMLNSNIEFNSSEQLKLNTIIASHKCNLQENHNSNNG 1016 ++D+ S ++ T ++ G TYENGRRNLK E VS EE RRAKRRERNR+AAAKCR+RRQ +++ LQ +V L+ L S ++ +E+++L + +++H C + E SNNG Sbjct: 56 ELDIVVKSEPVTATKPFLNSHRTKNRGLTYENGRRNLKAERVSVEEMDRRAKRRERNRIAAAKCRERRQFQLDELQHQVEMLRSTEFNLQSTLKQLEAEEVELRSKLSNHNCVITE---SNNG 175 The following BLAST results are available for this feature:
BLAST of BZIP domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of BZIP domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 4
BLAST of BZIP domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of BZIP domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of BZIP domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of BZIP domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30023819 ID=SMED30023819|Name=BZIP domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2331bpback to top protein sequence of SMED30023819-orf-1 >SMED30023819-orf-1 ID=SMED30023819-orf-1|Name=SMED30023819-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=358bp MTNKAFTEGELRNWVLSLPPDSIKSLEEALKSIRDNHFNSIEVRIIDFYQback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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