G_PROTEIN_RECEP_F1_2 domain-containing protein

Overview
NameG_PROTEIN_RECEP_F1_2 domain-containing protein
Smed IDSMED30023794
Length (bp)427
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30023794

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30023794SMESG000042531.1 dd_Smed_v4_61185_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30023794SMESG000042531.1 dd_Smed_v4_61185_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30023794SMESG000042531.1 dd_Smed_v4_61185_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30023794SMESG000042531.1 dd_Smed_v6_61185_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Human
Match: GPR68 (G protein-coupled receptor 68 [Source:HGNC Symbol;Acc:HGNC:4519])

HSP 1 Score: 47.7506 bits (112), Expect = 1.147e-6
Identity = 32/109 (29.36%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:   61 GIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYP---NQSKTLVTMVTV 378
            G P N   L+     I  RN     +  L VAD  +     L +W++   ++D     +++C+  G L+  +   ++GFLC I+V+R+L V++P   +Q +TL   V V
Sbjct:   35 GFPANCLSLYFGYLQIKARNELGVYLCNLTVAD--LFYICSLPFWLQYVLQHDNWSHGDLSCQVCGILLYENIYISVGFLCCISVDRYLAVAHPFRFHQFRTLKAAVGV 141
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Human
Match: GPR68 (G protein-coupled receptor 68 [Source:HGNC Symbol;Acc:HGNC:4519])

HSP 1 Score: 47.7506 bits (112), Expect = 1.369e-6
Identity = 32/109 (29.36%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:   61 GIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYP---NQSKTLVTMVTV 378
            G P N   L+     I  RN     +  L VAD  +     L +W++   ++D     +++C+  G L+  +   ++GFLC I+V+R+L V++P   +Q +TL   V V
Sbjct:   35 GFPANCLSLYFGYLQIKARNELGVYLCNLTVAD--LFYICSLPFWLQYVLQHDNWSHGDLSCQVCGILLYENIYISVGFLCCISVDRYLAVAHPFRFHQFRTLKAAVGV 141
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Human
Match: GPR68 (G protein-coupled receptor 68 [Source:HGNC Symbol;Acc:HGNC:4519])

HSP 1 Score: 47.7506 bits (112), Expect = 1.369e-6
Identity = 32/109 (29.36%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:   61 GIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYP---NQSKTLVTMVTV 378
            G P N   L+     I  RN     +  L VAD  +     L +W++   ++D     +++C+  G L+  +   ++GFLC I+V+R+L V++P   +Q +TL   V V
Sbjct:   35 GFPANCLSLYFGYLQIKARNELGVYLCNLTVAD--LFYICSLPFWLQYVLQHDNWSHGDLSCQVCGILLYENIYISVGFLCCISVDRYLAVAHPFRFHQFRTLKAAVGV 141
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Human
Match: GPR68 (G protein-coupled receptor 68 [Source:HGNC Symbol;Acc:HGNC:4519])

HSP 1 Score: 47.7506 bits (112), Expect = 1.369e-6
Identity = 32/109 (29.36%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:   61 GIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYP---NQSKTLVTMVTV 378
            G P N   L+     I  RN     +  L VAD  +     L +W++   ++D     +++C+  G L+  +   ++GFLC I+V+R+L V++P   +Q +TL   V V
Sbjct:   35 GFPANCLSLYFGYLQIKARNELGVYLCNLTVAD--LFYICSLPFWLQYVLQHDNWSHGDLSCQVCGILLYENIYISVGFLCCISVDRYLAVAHPFRFHQFRTLKAAVGV 141
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Human
Match: GPR4 (G protein-coupled receptor 4 [Source:HGNC Symbol;Acc:HGNC:4497])

HSP 1 Score: 45.4394 bits (106), Expect = 8.382e-6
Identity = 32/113 (28.32%), Postives = 54/113 (47.79%), Query Frame = 1 
Query:   61 GIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYP------NQSKTLVTMVTVI 381
            G+P N   L    + +  RN     ++ L++AD  +L    L  WV     +D       +CK  GF+   +   +I FLC I+V+R+L V++P       + KT V + +V+
Sbjct:   31 GLPTNCLALWAAYRQVQQRNELGVYLMNLSIAD--LLYICTLPLWVDYFLHHDNWIHGPGSCKLFGFIFYTNIYISIAFLCCISVDRYLAVAHPLRFARLRRVKTAVAVSSVV 141
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Celegans
Match: nmur-2 (NMUR (NeuroMedin U Receptor) homolog [Source:UniProtKB/TrEMBL;Acc:O17239])

HSP 1 Score: 46.595 bits (109), Expect = 1.211e-6
Identity = 27/94 (28.72%), Postives = 49/94 (52.13%), Query Frame = 1 
Query:   91 ILRKDISNRNTTRFLMILLAVADNAVLLTGV-LRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTM 369
            ++  + S  N T + +  LAV+D   L+ G+ + ++    + Y  R FS   CK   FL+  +S  +I  +C  + ER+L + +P +SK   T+
Sbjct:   55 VIAANKSMHNPTNYYLFSLAVSDIIALILGLPMEFYQSLDYSYPYR-FSEGICKARAFLIEFTSYASIMIICCFSFERWLAICHPLRSKIFSTL 147
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Zebrafish
Match: GPR68 (ovarian cancer G-protein coupled receptor 1-like [Source:NCBI gene;Acc:799203])

HSP 1 Score: 52.7582 bits (125), Expect = 1.346e-8
Identity = 35/128 (27.34%), Postives = 65/128 (50.78%), Query Frame = 1 
Query:   46 ILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTL-----VTMVTVICGISGFVLGVV 414
            +++  G+P N++ L+     +  RN     ++ L ++D  +L  G L  W++  F+ D    S   C+  GFL+  +   +IGFLC I+++R+L V YP +          T+V+ +  +    +GVV
Sbjct:   35 LVLLVGLPANAYSLYHAWLQLKARNELGVYLLNLTISD--LLYLGSLPLWLQYIFQGDNWSGSEWLCQLCGFLLYENIYVSIGFLCCISIDRYLAVVYPFRFSAFRTVRAATLVSTVVWLKELAVGVV 160
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Zebrafish
Match: gpr4 (G protein-coupled receptor 4 [Source:ZFIN;Acc:ZDB-GENE-101202-1])

HSP 1 Score: 47.3654 bits (111), Expect = 1.114e-6
Identity = 28/99 (28.28%), Postives = 48/99 (48.48%), Query Frame = 1 
Query:   46 ILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYP 342
            I+I  G P N   L      +  +N     ++ L++AD  +L    L  W+     +D      ++CK  GF+   +   +I FLC I+V+R+L V++P
Sbjct:   34 IVIVLGFPTNCMALWAAYMQVKQKNELGIYLMNLSIAD--LLYITTLPLWIDYFVHHDNWIHGQVSCKLFGFIFYTNIYVSIAFLCCISVDRYLAVAHP 130
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000032590.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:8:71853412:71854811:1 gene:ENSXETG00000008365.1 transcript:ENSXETT00000032590.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 48.521 bits (114), Expect = 5.945e-7
Identity = 34/119 (28.57%), Postives = 60/119 (50.42%), Query Frame = 1 
Query:   25 FIKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVI 381
            F  +Y  +L+  G+P N   L+     I  +N     +  L VAD  +L    L +W++   ++D   ++ + CK  G L+  +   +I FLC I+V+R+L + +P +   L TM T +
Sbjct:   24 FPVVYITVLVV-GLPANCLSLYYGYLQIKAKNELGIYLCNLTVAD--LLYIFSLPFWIQYVLQHDNWTYNEMMCKICGILLYENIYISIAFLCCISVDRYLALVHPFRFYKLRTMKTAL 139
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Xenopus
Match: foxd4l1.2 (forkhead box D4 like 1, gene 2 [Source:Xenbase;Acc:XB-GENE-876578])

HSP 1 Score: 46.2098 bits (108), Expect = 4.581e-6
Identity = 34/115 (29.57%), Postives = 57/115 (49.57%), Query Frame = 1 
Query:   25 FIKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTM 369
            F  +Y A+L   G+P N   L+     I  +N     +  L VAD  +L    L +W++   + D   ++   C+  G L+  +   +IGFLC I+V+R+L + +P +   L TM
Sbjct:   24 FPVVYVAVL-GVGLPANCLSLYYGYLQIKAKNELGIYLCNLTVAD--LLYIFSLPFWLQYVLQQDNWTYNETMCRICGILLYENIYISIGFLCCISVDRYLALVHPFRFHKLRTM 135
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Mouse
Match: Gpr68 (G protein-coupled receptor 68 [Source:MGI Symbol;Acc:MGI:2441763])

HSP 1 Score: 46.9802 bits (110), Expect = 1.824e-6
Identity = 30/109 (27.52%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:   61 GIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYP---NQSKTLVTMVTV 378
            G P N   L+     I  RN     +  L +AD  +     L +W++   ++D     +++C+  G L+  +   ++GFLC I+++R+L V++P   +Q +TL   V V
Sbjct:   35 GFPANCLSLYFGYLQIKARNELGVYLCNLTIAD--LFYICSLPFWLQYVLQHDDWSHGDLSCQVCGILLYENIYISVGFLCCISIDRYLAVAHPFRFHQFRTLKAAVGV 141
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Mouse
Match: Gpr68 (G protein-coupled receptor 68 [Source:MGI Symbol;Acc:MGI:2441763])

HSP 1 Score: 46.9802 bits (110), Expect = 1.824e-6
Identity = 30/109 (27.52%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:   61 GIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYP---NQSKTLVTMVTV 378
            G P N   L+     I  RN     +  L +AD  +     L +W++   ++D     +++C+  G L+  +   ++GFLC I+++R+L V++P   +Q +TL   V V
Sbjct:   35 GFPANCLSLYFGYLQIKARNELGVYLCNLTIAD--LFYICSLPFWLQYVLQHDDWSHGDLSCQVCGILLYENIYISVGFLCCISIDRYLAVAHPFRFHQFRTLKAAVGV 141
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Mouse
Match: Gpr68 (G protein-coupled receptor 68 [Source:MGI Symbol;Acc:MGI:2441763])

HSP 1 Score: 46.9802 bits (110), Expect = 1.824e-6
Identity = 30/109 (27.52%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:   61 GIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYP---NQSKTLVTMVTV 378
            G P N   L+     I  RN     +  L +AD  +     L +W++   ++D     +++C+  G L+  +   ++GFLC I+++R+L V++P   +Q +TL   V V
Sbjct:   35 GFPANCLSLYFGYLQIKARNELGVYLCNLTIAD--LFYICSLPFWLQYVLQHDDWSHGDLSCQVCGILLYENIYISVGFLCCISIDRYLAVAHPFRFHQFRTLKAAVGV 141
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q15743|OGR1_HUMAN (Ovarian cancer G-protein coupled receptor 1 OS=Homo sapiens OX=9606 GN=GPR68 PE=1 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 6.576e-6
Identity = 32/109 (29.36%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:   61 GIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYP---NQSKTLVTMVTV 378
            G P N   L+     I  RN     +  L VAD  +     L +W++   ++D     +++C+  G L+  +   ++GFLC I+V+R+L V++P   +Q +TL   V V
Sbjct:   35 GFPANCLSLYFGYLQIKARNELGVYLCNLTVAD--LFYICSLPFWLQYVLQHDNWSHGDLSCQVCGILLYENIYISVGFLCCISVDRYLAVAHPFRFHQFRTLKAAVGV 141
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A074ZL72 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Opisthorchis viverrini OX=6198 GN=T265_06254 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.357e-32
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 1 
Query:   28 IKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVICGISGFVLGVVLKN 423
            +KIYA++L+  GIP N     I+  + SNR TTRFLMI+L++AD+AVLL  VLRYW     K+D R     ACK H F V  S+D A+G LC++AVER LVV++P+++ ++V M +V  G+ GF L VV KN
Sbjct:   25 LKIYASLLLLVGIPANIICGIIMGGNRSNRMTTRFLMIVLSIADSAVLLVAVLRYWTMRVLKWDPRLIGPTACKLHTFSVGCSTDYAVGALCALAVERLLVVAFPHKANSIVNMCSVTFGMGGFGLLVVAKN 156
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: Q5DH78 (SJCHGC03552 protein OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.193e-31
Identity = 65/134 (48.51%), Postives = 93/134 (69.40%), Query Frame = 1 
Query:   25 FIKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVICGISGFVLGVVLKNS 426
             IK+YA++L+ FGIP N     I+  D SNR TTR ++I+LA+ADN VLLT VLRYW+   + +D+R    ++CK H F V  S+D A+G LC++AVER LVV+ P ++  LVT+ +V+ G++ F L V +KNS
Sbjct:   13 LIKVYASLLLMFGIPGNIISAIIMGGDKSNRLTTRLIIIILAIADNLVLLTAVLRYWLMEVYGWDLRTTGPLSCKIHVFAVGFSTDFAVGVLCAVAVERLLVVAIPYKASNLVTLRSVVIGMTCFALSVTIKNS 146
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A3R7JY41 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Clonorchis sinensis OX=79923 GN=CSKR_10786s PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.586e-31
Identity = 65/132 (49.24%), Postives = 89/132 (67.42%), Query Frame = 1 
Query:   28 IKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVICGISGFVLGVVLKN 423
            +KIYA++L+  GIP N     I+  + SNR TTRFLMI+L++AD+AVLL  VLRYW     K+D R     ACK H F V  S+D A+G LC++AVER LVV++P+++ ++V M +V  G+  F L VV KN
Sbjct:   25 LKIYASLLLLVGIPANIICGIIMGGNRSNRMTTRFLMIVLSIADSAVLLVAVLRYWTMRVLKWDPRLLGPTACKLHTFSVGCSTDYAVGALCALAVERLLVVAFPHKANSIVNMCSVTFGMGSFGLLVVAKN 156
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: H2KTT1 (G-protein coupled receptor (Fragment) OS=Clonorchis sinensis OX=79923 GN=CLF_106115 PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.626e-31
Identity = 65/132 (49.24%), Postives = 89/132 (67.42%), Query Frame = 1 
Query:   28 IKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVICGISGFVLGVVLKN 423
            +KIYA++L+  GIP N     I+  + SNR TTRFLMI+L++AD+AVLL  VLRYW     K+D R     ACK H F V  S+D A+G LC++AVER LVV++P+++ ++V M +V  G+  F L VV KN
Sbjct:   25 LKIYASLLLLVGIPANIICGIIMGGNRSNRMTTRFLMIVLSIADSAVLLVAVLRYWTMRVLKWDPRLLGPTACKLHTFSVGCSTDYAVGALCALAVERLLVVAFPHKANSIVNMCSVTFGMGSFGLLVVAKN 156
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A3S5CGU9 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS13591 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 9.225e-31
Identity = 65/137 (47.45%), Postives = 90/137 (65.69%), Query Frame = 1 
Query:   13 LMENFIKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVICGISGFVLGVVLKN 423
            ++E  +  Y  +L+  G+P N     I+  D + R TTR LMI+L+ AD AVLLT VLRYW+ + F +D R  S++ACK H F VS +SD A+G LCSIAVERFLVV++P +S  LV +  +I G+  F L + +KN
Sbjct:   25 IIETCLSAYCTLLLVIGLPGNLISGIIMGTDPATRKTTRLLMIVLSTADTAVLLTAVLRYWMTSVFHWDPRDTSSLACKVHTFAVSCASDFAVGSLCSIAVERFLVVAFPQKSNLLVRVSLIIIGMLCFTLCIFMKN 161
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Match: GPR68 (G protein-coupled receptor 68 [Source:NCBI gene;Acc:103041579])

HSP 1 Score: 55.8398 bits (133), Expect = 1.272e-9
Identity = 33/112 (29.46%), Postives = 59/112 (52.68%), Query Frame = 1 
Query:   46 ILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVI 381
            +++  G+P N++ L+     +  RN     +I L V+D  +L    L  W++  F+ D   +    C+  GFL+  +   +IGFLC I+++R+L V YP +  +L TM   +
Sbjct:   36 LVLLVGLPANAYSLYHAWLQLRARNELGVYLINLTVSD--LLYLASLPLWLQYFFQGDDWQYGEWVCQLCGFLLYENIYVSIGFLCCISIDRYLAVVYPLRFSSLRTMKAAV 145
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Match: gpr4 (G-protein coupled receptor 4 [Source:NCBI gene;Acc:103040167])

HSP 1 Score: 49.6766 bits (117), Expect = 1.522e-7
Identity = 30/99 (30.30%), Postives = 48/99 (48.48%), Query Frame = 1 
Query:   46 ILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYP 342
            I+I  G P N   L      +  +N     +I L+VAD  +L    L  W+    ++D       +CK  GF+   +   +I FLC I+++R+L V+YP
Sbjct:   23 IVIILGFPTNCMALWAAYMQVRQKNELGIYLISLSVAD--LLYIATLPLWIDYFLQHDNWIHGPGSCKVFGFIFYTNIYVSIAFLCCISLDRYLAVAYP 119
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Match: si:dkey-148a17.6 (leukotriene B4 receptor 1-like [Source:NCBI gene;Acc:103021612])

HSP 1 Score: 49.6766 bits (117), Expect = 1.800e-7
Identity = 35/128 (27.34%), Postives = 65/128 (50.78%), Query Frame = 1 
Query:   43 AILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQS-----KTLVTMVTVICGISGFVLGV 411
            AI    G+P N  V+  + K +  R+ T  L++ LA+AD  VL+T  L  W+ +  +  +  F  + CK   ++++     ++  +  +++ERFL V YP  S     K  +  V ++  +S F+L +
Sbjct:   33 AICFVLGVPGNLMVVWTILKHVKKRSHTVMLILHLAIADLLVLIT--LPLWIYSLARSWV--FGEVVCKAMAYIINACMYASVFLITIMSLERFLAVRYPFASASWRRKQALRKVLLVVWVSSFLLSI 156
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Match: ltb4r (leukotriene B4 receptor 1-like [Source:NCBI gene;Acc:103027614])

HSP 1 Score: 46.595 bits (109), Expect = 2.070e-6
Identity = 38/133 (28.57%), Postives = 65/133 (48.87%), Query Frame = 1 
Query:    1 EKSVLMENFIKIYAAILIF-FGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVICGISG 396
               +L   +I I   +L F  G P N FV   +   +  R+ T  L++ LAVAD  VLL+  L   + A   ++   F ++ CK   +L  V+   +I  +C ++++R+L VS P  S+ +    T+   + G
Sbjct:   13 PSKILSSRYIGIVILVLAFVLGFPGNLFVAWSVLCRVKQRSVTCLLVLNLAVADAFVLLSAPLFLRLLAVLNWE---FGDVMCKTVHYLCCVNMYVSIYLICLMSLDRWLAVSRPFLSQKMRNKRTIYMAMLG 142
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Match: ltb4r (leukotriene B4 receptor 1-like [Source:NCBI gene;Acc:103027614])

HSP 1 Score: 45.0542 bits (105), Expect = 7.383e-6
Identity = 37/127 (29.13%), Postives = 63/127 (49.61%), Query Frame = 1 
Query:   19 ENFIKIYAAILIF-FGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVICGISG 396
              +I I   +L F  G P N FV   +   +  R+ T  L++ LAVAD  VLL+  L   + A   ++   F ++ CK   +L  V+   +I  +C ++++R+L VS P  S+ +    T+   + G
Sbjct:   25 SRYIGIVILVLAFVLGFPGNLFVAWSVLCRVKQRSVTCLLVLNLAVADAFVLLSAPLFLRLLAVLNWE---FGDVMCKTVHYLCCVNMYVSIYLICLMSLDRWLAVSRPFLSQKMRNKRTIYMAMLG 148
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000029747.1 (G protein-coupled receptor 4 [Source:NCBI gene;Acc:101161819])

HSP 1 Score: 50.8322 bits (120), Expect = 7.195e-8
Identity = 30/99 (30.30%), Postives = 49/99 (49.49%), Query Frame = 1 
Query:   46 ILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYP 342
            I+I  G+P N   L      +  RN     ++ L+VAD  +L    L  W+    ++D       +CK  GF+   +   +I FLC I+++R+L V+YP
Sbjct:   24 IVIVLGLPTNCMALWAAYLQVRQRNELGIYLMNLSVAD--LLYIATLPLWIDYFLQHDDWIHGQESCKLFGFIFYTNIYVSIAFLCCISMDRYLAVAYP 120
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Match: si:dkey-148a17.5 (leukotriene B4 receptor 1 [Source:NCBI gene;Acc:101172802])

HSP 1 Score: 50.447 bits (119), Expect = 9.032e-8
Identity = 32/97 (32.99%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:   61 GIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRH---FSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYP 342
            G+P N FV+  + + +  R+ T  L++ LAVAD  VL+T  L  W+     Y + H   F    CK   + +S     +I F+  ++VERF+ +S+P
Sbjct:   34 GVPGNLFVIWTILRSMKKRSHTVMLILHLAVADTVVLIT--LPLWI-----YSMAHTWEFGEGTCKALVYFISTCMYSSIFFITLMSVERFVAISHP 123
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Match: GPR68 (G protein-coupled receptor 68 [Source:NCBI gene;Acc:101156937])

HSP 1 Score: 48.1358 bits (113), Expect = 6.044e-7
Identity = 30/113 (26.55%), Postives = 55/113 (48.67%), Query Frame = 1 
Query:    4 KSVLMENFIKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYP 342
            K  + +N       +++  G+P N + L+   + +  +N     +I L V+D   L +  L  W+   F+ D  H     C   GFL+  +   ++GFLC I+++R+L V +P
Sbjct:   16 KHDIHQNVFSFVYILVLLVGVPSNLYSLYHGAQQLKQKNELGVYLINLTVSDLLYLFS--LPLWLEYFFRGDDWHHREWLCNLCGFLLYENIYISVGFLCCISLDRYLAVVHP 126
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000042531.1 (SMESG000042531.1)

HSP 1 Score: 288.115 bits (736), Expect = 6.387e-99
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 
Query:    1 EKSVLMENFIKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVICGISGFVLGVVLKNS 426
            EKSVLMENFIKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVICGISGFVLGV+LKNS
Sbjct:   16 EKSVLMENFIKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVICGISGFVLGVILKNS 157
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000042465.1 (SMESG000042465.1)

HSP 1 Score: 195.282 bits (495), Expect = 2.315e-62
Identity = 92/139 (66.19%), Postives = 115/139 (82.73%), Query Frame = 1 
Query:    7 SVLMENFIKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVICGISGFVLGVVLKN 423
            +++ME F+K +AA+LIF GIPFN   L++L +D SNRNTTRFLMILL++ DNAVLLT VLRYW+RATF YDIR ++N  CK HGFLVS+SSD A+G LC+IAVERF+VVSYP +SK+LVT+ TVI G+ GF  GV+ KN
Sbjct:   20 NIIMETFVKSFAALLIFLGIPFNCISLYVLYRDKSNRNTTRFLMILLSICDNAVLLTAVLRYWIRATFNYDIRIYNNFVCKTHGFLVSISSDFAVGTLCAIAVERFIVVSYPQKSKSLVTIFTVIVGMIGFSFGVICKN 158
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000063789.1 (SMESG000063789.1)

HSP 1 Score: 120.553 bits (301), Expect = 2.076e-33
Identity = 65/136 (47.79%), Postives = 88/136 (64.71%), Query Frame = 1 
Query:   19 ENFIKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVICGISGFVLGVVLKNS 426
            E  +++Y  +LIF GIP N     ++  D +N  TTR LM+LLA AD  VLLT +LRYWV   FK DIR  +++ C  H FLV+VS+D AI  LC++A+ERF+VV +P +S   VTM   I  I+   L ++LKNS
Sbjct:   17 EFILQVYGGLLIFAGIPANVICGIVMGTDKTNHFTTRLLMVLLAAADCVVLLTALLRYWVIEAFKVDIRSINSLTCLLHTFLVAVSTDAAIATLCALAIERFIVVGFPYKSIRCVTMKNSIISITMVYLILILKNS 152
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000054459.1 (SMESG000054459.1)

HSP 1 Score: 109.383 bits (272), Expect = 2.544e-29
Identity = 55/133 (41.35%), Postives = 86/133 (64.66%), Query Frame = 1 
Query:   28 IKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTMVTVICGISGFVLGVVLKNS 426
            I+IYA +L+F G+P N   + ++  D + R TT+ LMI+L++ D+ V++  V RYW+   FK DIR ++N+ C  H FLV + +D A+G LC +AVERF+VV +P +S  L+ +  ++ GI  F+     KNS
Sbjct:   10 IQIYATLLLFVGLPLNIISVVVVAYDYTTRLTTKLLMIILSITDSLVIVIAVSRYWIFVIFKTDIRIYNNLICMIHSFLVGIVTDLAVGSLCFLAVERFIVVVFPQKSNQLIKVNRILFGIIIFLGVTSFKNS 142
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000001813.1 (SMESG000001813.1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.215e-21
Identity = 50/136 (36.76%), Postives = 80/136 (58.82%), Query Frame = 1 
Query:   10 VLMENFIKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLAVADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFLCSIAVERFLVVSYPNQSKTLVTM--VTVICGISGFVLGV 411
            +L+  F+  YA  LI  G   N F++  +R ++  R   R ++++LA +D AVL   VLRYW+  TF  DIR  SN+ C  H FL  +++D A+  LC+++VER + + YP +SK + +   V    G+S FV+ +
Sbjct:    9 LLIRYFLAFYAGFLIVIGSLGNIFIIFGMRSNLRIR-IPRLILVILAGSDTAVLWVAVLRYWIEITFDIDIRTSSNLLCVFHTFLTYITTDFAVAVLCTLSVERLVSMRYPLRSKVIDSWEKVCFCAGVSVFVIAM 143
The following BLAST results are available for this feature:
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
GPR681.147e-629.36G protein-coupled receptor 68 [Source:HGNC Symbol;... [more]
GPR681.369e-629.36G protein-coupled receptor 68 [Source:HGNC Symbol;... [more]
GPR681.369e-629.36G protein-coupled receptor 68 [Source:HGNC Symbol;... [more]
GPR681.369e-629.36G protein-coupled receptor 68 [Source:HGNC Symbol;... [more]
GPR48.382e-628.32G protein-coupled receptor 4 [Source:HGNC Symbol;A... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
nmur-21.211e-628.72NMUR (NeuroMedin U Receptor) homolog [Source:UniP... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
GPR681.346e-827.34ovarian cancer G-protein coupled receptor 1-like [... [more]
gpr41.114e-628.28G protein-coupled receptor 4 [Source:ZFIN;Acc:ZDB-... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSXETT00000032590.15.945e-728.57pep primary_assembly:Xenopus_tropicalis_v9.1:8:718... [more]
foxd4l1.24.581e-629.57forkhead box D4 like 1, gene 2 [Source:Xenbase;Acc... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Gpr681.824e-627.52G protein-coupled receptor 68 [Source:MGI Symbol;A... [more]
Gpr681.824e-627.52G protein-coupled receptor 68 [Source:MGI Symbol;A... [more]
Gpr681.824e-627.52G protein-coupled receptor 68 [Source:MGI Symbol;A... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q15743|OGR1_HUMAN6.576e-629.36Ovarian cancer G-protein coupled receptor 1 OS=Hom... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A074ZL726.357e-3250.00G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
Q5DH781.193e-3148.51SJCHGC03552 protein OS=Schistosoma japonicum OX=61... [more]
A0A3R7JY414.586e-3149.24G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
H2KTT14.626e-3149.24G-protein coupled receptor (Fragment) OS=Clonorchi... [more]
A0A3S5CGU99.225e-3147.45G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
GPR681.272e-929.46G protein-coupled receptor 68 [Source:NCBI gene;Ac... [more]
gpr41.522e-730.30G-protein coupled receptor 4 [Source:NCBI gene;Acc... [more]
si:dkey-148a17.61.800e-727.34leukotriene B4 receptor 1-like [Source:NCBI gene;A... [more]
ltb4r2.070e-628.57leukotriene B4 receptor 1-like [Source:NCBI gene;A... [more]
ltb4r7.383e-629.13leukotriene B4 receptor 1-like [Source:NCBI gene;A... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ENSORLT00000029747.17.195e-830.30G protein-coupled receptor 4 [Source:NCBI gene;Acc... [more]
si:dkey-148a17.59.032e-832.99leukotriene B4 receptor 1 [Source:NCBI gene;Acc:10... [more]
GPR686.044e-726.55G protein-coupled receptor 68 [Source:NCBI gene;Ac... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000042531.16.387e-9999.30SMESG000042531.1[more]
SMESG000042465.12.315e-6266.19SMESG000042465.1[more]
SMESG000063789.12.076e-3347.79SMESG000063789.1[more]
SMESG000054459.12.544e-2941.35SMESG000054459.1[more]
SMESG000001813.14.215e-2136.76SMESG000001813.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30023794 ID=SMED30023794|Name=G_PROTEIN_RECEP_F1_2 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=427bp
GAAAAAAGTGTTTTAATGGAGAATTTTATTAAAATCTATGCGGCGATTTT
GATTTTTTTCGGAATACCTTTTAATTCATTTGTTCTTCACATACTAAGGA
AAGACATTTCAAATCGAAACACTACGAGATTCCTCATGATATTATTAGCT
GTTGCCGATAATGCAGTTTTACTCACTGGAGTTTTAAGATATTGGGTAAG
AGCGACTTTTAAATATGACATTCGACATTTTAGCAATATTGCTTGCAAAG
GTCATGGATTTCTAGTTTCAGTGTCATCTGATTGCGCAATCGGATTCTTA
TGCTCCATAGCCGTTGAAAGATTTCTCGTCGTTTCATACCCCAATCAATC
CAAAACACTCGTAACCATGGTCACAGTAATCTGCGGTATTTCCGGATTTG
TGTTAGGGGTAGTTTTAAAAAACAGTT
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protein sequence of SMED30023794-orf-1

>SMED30023794-orf-1 ID=SMED30023794-orf-1|Name=SMED30023794-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=142bp
EKSVLMENFIKIYAAILIFFGIPFNSFVLHILRKDISNRNTTRFLMILLA
VADNAVLLTGVLRYWVRATFKYDIRHFSNIACKGHGFLVSVSSDCAIGFL
CSIAVERFLVVSYPNQSKTLVTMVTVICGISGFVLGVVLKNS
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: biological process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: molecular function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: cellular component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000276G protein-coupled receptor, rhodopsin-likePRINTSPR00237GPCRRHODOPSNcoord: 9..33
score: 18.66
coord: 89..111
score: 26.0
coord: 42..63
score: 27.57
IPR000276G protein-coupled receptor, rhodopsin-likePFAMPF000017tm_1coord: 25..127
e-value: 1.1E-9
score: 38.0
IPR000276G protein-coupled receptor, rhodopsin-likePROSITEPS00237G_PROTEIN_RECEP_F1_1coord: 95..111
NoneNo IPR availableGENE3DG3DSA:1.20.1070.10coord: 1..142
e-value: 2.8E-21
score: 77.7
NoneNo IPR availablePANTHERPTHR46641FAMILY NOT NAMEDcoord: 9..141
NoneNo IPR availablePANTHERPTHR46641:SF12CNMAMIDE RECEPTORcoord: 9..141
NoneNo IPR availableCDDcd006377tm_classA_rhodopsin-likecoord: 15..132
e-value: 2.04141E-11
score: 57.6726
NoneNo IPR availableSUPERFAMILYSSF81321Family A G protein-coupled receptor-likecoord: 9..136
NoneNo IPR availableTMHMMTMhelixcoord: 44..66
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 120..139
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 24..142
score: 13.049