SMED30023766
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30023766 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13
Alignments
SMED30023766 aligns in the following genomic locations:
Homology
BLAST of SMED30023766 vs. Ensembl Human
Match: DYNLL2 (dynein light chain LC8-type 2 [Source:HGNC Symbol;Acc:HGNC:24596]) HSP 1 Score: 171.4 bits (433), Expect = 1.359e-55 Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476]) HSP 1 Score: 162.54 bits (410), Expect = 4.188e-52 Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M +R+AVIKNADM E+MQ+ +V CAT A+EKYNIEKDIAA IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476]) HSP 1 Score: 162.54 bits (410), Expect = 4.188e-52 Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M +R+AVIKNADM E+MQ+ +V CAT A+EKYNIEKDIAA IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476]) HSP 1 Score: 162.54 bits (410), Expect = 4.188e-52 Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M +R+AVIKNADM E+MQ+ +V CAT A+EKYNIEKDIAA IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476]) HSP 1 Score: 162.54 bits (410), Expect = 4.188e-52 Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M +R+AVIKNADM E+MQ+ +V CAT A+EKYNIEKDIAA IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Celegans
Match: dlc-1 (Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799]) HSP 1 Score: 166.007 bits (419), Expect = 8.148e-54 Identity = 75/89 (84.27%), Postives = 83/89 (93.26%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M +R+AVIKNADM +DMQ+ A++CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Celegans
Match: dlc-1 (Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799]) HSP 1 Score: 166.007 bits (419), Expect = 8.148e-54 Identity = 75/89 (84.27%), Postives = 83/89 (93.26%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M +R+AVIKNADM +DMQ+ A++CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Celegans
Match: dlc-1 (Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799]) HSP 1 Score: 166.007 bits (419), Expect = 8.148e-54 Identity = 75/89 (84.27%), Postives = 83/89 (93.26%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M +R+AVIKNADM +DMQ+ A++CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Celegans
Match: dlc-2 (Probable dynein light chain 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q21557]) HSP 1 Score: 80.1073 bits (196), Expect = 4.065e-20 Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MSE + +K DM++ ++ ++ A YNI+KD+AAF+K+E DK + TWH I G+ FG V++E HFI +V ++++K G Sbjct: 1 MSEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGKCFGSRVSYEMGHFILLKCNKVNVMIYKCG 89
BLAST of SMED30023766 vs. Ensembl Celegans
Match: dlc-5 (Dynein Light Chain [Source:UniProtKB/TrEMBL;Acc:Q65XS9]) HSP 1 Score: 82.0333 bits (201), Expect = 1.019e-19 Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = -3 Query: 122 AVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 373 A ++++ M M++ A + A ++ Y++E DIA +K FD+ Y P WHCI G++FG +VT E FIYF +G +A +LFK+ Sbjct: 58 ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSFVTFEPDSFIYFRIGTIAFMLFKTS 141
BLAST of SMED30023766 vs. Ensembl Fly
Match: Cdlc2 (gene:FBgn0026141 transcript:FBtr0077924) HSP 1 Score: 168.703 bits (426), Expect = 8.433e-55 Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM E+MQ+ AV+CAT A+EKYNIEKDIAAFIKKEFDK YNPTWHCIVGRNFG YVTHET+HFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Fly
Match: Cdlc2 (gene:FBgn0026141 transcript:FBtr0305553) HSP 1 Score: 168.703 bits (426), Expect = 8.433e-55 Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM E+MQ+ AV+CAT A+EKYNIEKDIAAFIKKEFDK YNPTWHCIVGRNFG YVTHET+HFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Fly
Match: Cdlc2 (gene:FBgn0026141 transcript:FBtr0077925) HSP 1 Score: 168.703 bits (426), Expect = 8.433e-55 Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM E+MQ+ AV+CAT A+EKYNIEKDIAAFIKKEFDK YNPTWHCIVGRNFG YVTHET+HFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0070706) HSP 1 Score: 167.548 bits (423), Expect = 2.750e-54 Identity = 76/89 (85.39%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM E+MQ+ AV+CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHET+HFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0070704) HSP 1 Score: 167.548 bits (423), Expect = 2.750e-54 Identity = 76/89 (85.39%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM E+MQ+ AV+CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHET+HFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Zebrafish
Match: dynll2a (dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:ZDB-GENE-030828-11]) HSP 1 Score: 170.244 bits (430), Expect = 2.819e-55 Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M++R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Zebrafish
Match: dynll2b (dynein, light chain, LC8-type 2b [Source:ZFIN;Acc:ZDB-GENE-050320-132]) HSP 1 Score: 170.244 bits (430), Expect = 2.819e-55 Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M++R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Zebrafish
Match: dynll2a (dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:ZDB-GENE-030828-11]) HSP 1 Score: 170.244 bits (430), Expect = 2.819e-55 Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M++R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Zebrafish
Match: dynll1 (dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961]) HSP 1 Score: 167.548 bits (423), Expect = 3.202e-54 Identity = 77/89 (86.52%), Postives = 83/89 (93.26%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM E+MQ+ AV CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Zebrafish
Match: dynll1 (dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961]) HSP 1 Score: 167.548 bits (423), Expect = 3.202e-54 Identity = 77/89 (86.52%), Postives = 83/89 (93.26%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM E+MQ+ AV CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Xenopus
Match: dynll2 (dynein light chain LC8-type 2 [Source:NCBI gene;Acc:100038056]) HSP 1 Score: 171.4 bits (433), Expect = 1.232e-55 Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Xenopus
Match: dynll1 (dynein light chain LC8-type 1 [Source:NCBI gene;Acc:448652]) HSP 1 Score: 169.474 bits (428), Expect = 8.835e-55 Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MSER+AVIKNADM E+MQ+ AV+CAT A+EK+NIEKDIAAFIKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSERKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Xenopus
Match: ENSXETT00000015639.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:2:48978690:48979872:1 gene:ENSXETG00000009974.1 transcript:ENSXETT00000015639.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 76.2554 bits (186), Expect = 6.666e-18 Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 2 Query: 119 LSGFK*KNSNLAQIKINEMFCFMSDIPSKVSPHNTVPGWIV*FIEFFFDKCSNIFLYVVFLHRCRGTVDSCFLHIFLHISIFNYCLTFRH 388 L+ FK +N NLAQIK++E+ CFM I +KVS ++ VP + D SN+FL ++ LH GTV+S LH+F H+SI + L+ RH Sbjct: 3 LARFKEENCNLAQIKVDEVLCFMCYIAAKVSANDAVP-------IYLLDIGSNVFLNIILLHCLCGTVNSILLHVFRHVSILDNSLSVRH 85
BLAST of SMED30023766 vs. Ensembl Xenopus
Match: rnf181 (ring finger protein 181 [Source:Xenbase;Acc:XB-GENE-964051]) HSP 1 Score: 61.2326 bits (147), Expect = 3.437e-12 Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = -3 Query: 128 AVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAA-FIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIY-FYLGQVAILLFK 373 +I++ DM E+M+ + TA EK+ + AA IK+ DK + +WH ++G FG +THE K+ +Y F+ G +AI ++K Sbjct: 21 PLIRHTDMPEEMRVETMELCVTACEKFASNNESAAKMIKETMDKKFGSSWHVVIGEGFGFEITHEVKNLLYMFFGGSLAICVWK 104
BLAST of SMED30023766 vs. Ensembl Mouse
Match: Dynll2 (dynein light chain LC8-type 2 [Source:MGI Symbol;Acc:MGI:1915347]) HSP 1 Score: 171.4 bits (433), Expect = 9.327e-56 Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Mouse
Match: Dynll2 (dynein light chain LC8-type 2 [Source:MGI Symbol;Acc:MGI:1915347]) HSP 1 Score: 171.4 bits (433), Expect = 9.327e-56 Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Mouse
Match: Dynll2 (dynein light chain LC8-type 2 [Source:MGI Symbol;Acc:MGI:1915347]) HSP 1 Score: 171.4 bits (433), Expect = 9.327e-56 Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Mouse
Match: Dynll1 (dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457]) HSP 1 Score: 162.54 bits (410), Expect = 2.875e-52 Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M +R+AVIKNADM E+MQ+ +V CAT A+EKYNIEKDIAA IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Mouse
Match: Dynll1 (dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457]) HSP 1 Score: 162.54 bits (410), Expect = 2.875e-52 Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M +R+AVIKNADM E+MQ+ +V CAT A+EKYNIEKDIAA IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. UniProt/SwissProt
Match: sp|Q78P75|DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 6.524e-55 Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. UniProt/SwissProt
Match: sp|Q9D0M5|DYL2_MOUSE (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 6.524e-55 Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. UniProt/SwissProt
Match: sp|Q96FJ2|DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 6.524e-55 Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. UniProt/SwissProt
Match: sp|Q3MHR3|DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 6.524e-55 Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. UniProt/SwissProt
Match: sp|O02414|DYL1_HELCR (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 6.866e-54 Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MSER+AVIKNADM EDMQ+ AV+CAT A+EK+NIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89
BLAST of SMED30023766 vs. TrEMBL
Match: A0A158QP59 (Dynein light chain OS=Haemonchus placei OX=6290 GN=HPLM_LOCUS11927 PE=3 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 5.446e-54 Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = -3 Query: 122 ITVQINKLLIKLLSKMSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 433 IT + + L + L KM +R+AVIKNADM EDMQ+ A++CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 36 ITAKCSSLATQFLQKMVDRKAVIKNADMSEDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 139
BLAST of SMED30023766 vs. TrEMBL
Match: A0A3P8VV78 (Dynein light chain OS=Cynoglossus semilaevis OX=244447 PE=3 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 7.145e-54 Identity = 88/122 (72.13%), Postives = 98/122 (80.33%), Query Frame = -3 Query: 122 CQNVSKTN*NYSTKLFFITVQ-INKLLIKLLSKMSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 484 CQ V + + YS +L F T +N L + MS+R+AVIKNADM EDMQ+ AV CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 13 CQPV-RGSCRYSCRLLFQTSNTVNATLTG--ASMSDRKAVIKNADMSEDMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 131
BLAST of SMED30023766 vs. TrEMBL
Match: H3BFR6 (Dynein light chain OS=Latimeria chalumnae OX=7897 GN=DYNLL1 PE=3 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 9.224e-54 Identity = 82/97 (84.54%), Postives = 88/97 (90.72%), Query Frame = -3 Query: 122 LLIKLLSKMSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 412 LL+ + MSER+AVIKNADM EDMQ+ AV+CAT A+EKYNIEKDIAAFIKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 19 LLLHPQANMSERKAVIKNADMPEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 115
BLAST of SMED30023766 vs. TrEMBL
Match: Q0P4G1 (Dynein light chain (Fragment) OS=Danio rerio OX=7955 GN=dynll2a PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.123e-53 Identity = 86/118 (72.88%), Postives = 94/118 (79.66%), Query Frame = -3 Query: 122 VSKTN*NYSTKLFFITVQINKLLIKLLSKMSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 475 SK + +TK QI I L M++R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 8 ASKGHPQKTTKATDFASQIYLAKILLTDNMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 125
BLAST of SMED30023766 vs. TrEMBL
Match: A0A151X3V7 (Dynein light chain OS=Trachymyrmex zeteki OX=64791 GN=ALC60_06064 PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 1.375e-53 Identity = 80/105 (76.19%), Postives = 91/105 (86.67%), Query Frame = -3 Query: 122 FITVQINKLLIKLLSKMSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 436 + TV++ + KMS+R+AVIKNADM E+MQ+ AV+CAT A+EKYNIEKDIAAFIKKEFDK YNPTWHCIVGRNFG YVTHET+HFIYFYLGQVAILLFKSG Sbjct: 7 YATVKVVRFPRPRTDKMSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 111
BLAST of SMED30023766 vs. Ensembl Cavefish
Match: ENSAMXT00000047143.1 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:103041528]) HSP 1 Score: 170.244 bits (430), Expect = 2.389e-55 Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M++R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Cavefish
Match: dynll2b (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:103041528]) HSP 1 Score: 170.244 bits (430), Expect = 2.389e-55 Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M++R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Cavefish
Match: dynll1 (dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961]) HSP 1 Score: 149.058 bits (375), Expect = 1.308e-46 Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = -3 Query: 149 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQ 388 MS+R+AVIKNADM E+MQ+ AV CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQ Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
BLAST of SMED30023766 vs. Ensembl Cavefish
Match: ENSAMXT00000025088.2 (pep primary_assembly:Astyanax_mexicanus-2.0:6:35277932:35282302:-1 gene:ENSAMXG00000024374.2 transcript:ENSAMXT00000025088.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 73.9442 bits (180), Expect = 2.706e-17 Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = 2 Query: 137 KNSNLAQIKINEMFCFMSDIPSKVSPHNTVPGWIV*FIEFF---FDKCSNIFLYVVFLHRCRGTVDSCFLHIFLHISIFNYCLTFRH 388 +N +LAQ++++E+ + D+ ++V H+ VPG +V ++ FD S++ L VVFL GT +S LH+ H+ IF++CL RH Sbjct: 9 QNCHLAQVEVDEVLGLVGDVAAEVPAHDAVPGGVVLLVKLLTHLFDVGSDVLLDVVFLQSLSGTFNSILLHLLRHVRIFDHCLPVRH 95
BLAST of SMED30023766 vs. Ensembl Cavefish
Match: ENSAMXT00000013314.2 (pep primary_assembly:Astyanax_mexicanus-2.0:1:23335261:23337700:1 gene:ENSAMXG00000012944.2 transcript:ENSAMXT00000013314.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 68.1662 bits (165), Expect = 2.522e-15 Identity = 30/92 (32.61%), Postives = 54/92 (58.70%), Query Frame = 2 Query: 113 IKLSGFK*KNSNLAQIKINEMFCFMSDIPSKVSPHNTVPGWIV*FIEFFFDKCSNIFLYVVFLHRCRGTVDSCFLHIFLHISIFNYCLTFRH 388 I + F+ + +LAQ++++E+ + D+ ++V HN VP W+V + + FD ++ LYVV LH TVD LH+ H+S+ ++ + H Sbjct: 1 IASARFEQEYGHLAQVEVDEVLRLVGDVTAEVPAHNAVPSWVV-LLAYLFDVRCDVLLYVVLLHCLCCTVDCVLLHVLRHVSVLDHSFSVSH 91
BLAST of SMED30023766 vs. Ensembl Yeast
Match: DYN2 (Cytoplasmic light chain dynein, microtubule motor protein; required for intracellular transport and cell division; involved in mitotic spindle positioning; forms complex with dynein intermediate chain Pac11p that promotes Dyn1p homodimerization, potentiates motor processivity; Dyn2p-Pac11p complex important for interaction of dynein motor complex with dynactin complex; acts as molecular glue to dimerize, stabilize Nup82-Nsp1-Nup159 complex module of cytoplasmic pore filaments [Source:SGD;Acc:S000002832]) HSP 1 Score: 97.0561 bits (240), Expect = 1.846e-27 Identity = 39/91 (42.86%), Postives = 63/91 (69.23%), Query Frame = -3 Query: 125 LSKMSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKS 397 +S ++ ++K +D+ + ++E + + A++KY +E+DIA +KK+ D Y TWH IVG+NFG YVTHE HF+YFY+G +A L+FK+ Sbjct: 1 MSDENKSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAFLVFKT 91
BLAST of SMED30023766 vs. Ensembl Nematostella
Match: EDO44582 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVI5]) HSP 1 Score: 168.318 bits (425), Expect = 4.759e-55 Identity = 78/89 (87.64%), Postives = 82/89 (92.13%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MSER+AVIKNADM EDMQ A+ CAT A+EK+NIEKDIAAFIKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSERKAVIKNADMAEDMQTDAIECATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Nematostella
Match: EDO38557 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SCP2]) HSP 1 Score: 62.003 bits (149), Expect = 3.448e-13 Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = -3 Query: 128 VIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAA-FIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIY-FYLGQVAILLFK 370 +I+ +DM ++M+ A+ TA EK++ + AA IK+ DK + +WH +VG FG +THE ++ +Y F+ G AI ++K Sbjct: 26 LIRYSDMNDEMRTEAMELCVTACEKFSNNNETAAKMIKESMDKKFGASWHAVVGEGFGFEITHEVRNLLYMFFGGTTAICIWK 108
BLAST of SMED30023766 vs. Ensembl Medaka
Match: dynll1 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101171417]) HSP 1 Score: 169.474 bits (428), Expect = 4.681e-55 Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+R+AVIKNADM EDMQ+ AV CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Medaka
Match: ENSORLT00000005747.2 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101162462]) HSP 1 Score: 168.318 bits (425), Expect = 1.310e-54 Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 M++R+AVIKNADM E+MQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MTDRKAVIKNADMSEEMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Medaka
Match: DYNLL2 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101174042]) HSP 1 Score: 164.081 bits (414), Expect = 6.036e-53 Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MS+++AVIKNADM ++MQ+ AV+CA AMEKYNIEKDIAA++KKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSDKKAVIKNADMSDEMQQDAVDCAMQAMEKYNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Ensembl Medaka
Match: ENSORLT00000028916.1 (pep primary_assembly:ASM223467v1:9:6243543:6247014:-1 gene:ENSORLG00000022487.1 transcript:ENSORLT00000028916.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 70.0922 bits (170), Expect = 5.999e-16 Identity = 32/90 (35.56%), Postives = 53/90 (58.89%), Query Frame = 2 Query: 119 LSGFK*KNSNLAQIKINEMFCFMSDIPSKVSPHNTVPGWIV*FIEFFFDKCSNIFLYVVFLHRCRGTVDSCFLHIFLHISIFNYCLTFRH 388 LS + +N +L Q+++NEM +S + ++V P+N VP +V +E ++FL VV L GT+ LH+ H+ IF++CL+ RH Sbjct: 3 LSRLEQQNGHLTQVEVNEMLGLVSHVAAEVPPNNAVPSRVVFLVELL-----DVFLDVVLLQGLCGTLHGVLLHVLRHVGIFDHCLSVRH 87
BLAST of SMED30023766 vs. Ensembl Medaka
Match: ENSORLT00000006686.2 (pep primary_assembly:ASM223467v1:14:12601680:12602092:1 gene:ENSORLG00000005302.2 transcript:ENSORLT00000006686.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 70.0922 bits (170), Expect = 8.285e-16 Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 2 Query: 122 SGFK*KNSNLAQIKINEMFCFMSDIPSKVSPHNTVPGWIV*FIEFF-----FDKCSNIFLYVVFLHRCRGTVDSCFLHIFLHISIFNYCL 376 +G K +NS+L Q++++EM + I +KV P+N VP +V ++F D CSNIFL +V LH GTV LH H+ IF++ L Sbjct: 19 AGLKQQNSHLTQVEVDEMLRLVGHIATKVPPNNAVPCRVVFLVKFLDPTYLLDICSNIFLDIVLLHGLHGTVHCILLHFIRHVCIFDHRL 108
BLAST of SMED30023766 vs. Planmine SMEST
Match: SMESG000073811.1 (SMESG000073811.1) HSP 1 Score: 187.963 bits (476), Expect = 1.829e-62 Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Planmine SMEST
Match: SMESG000005286.1 (SMESG000005286.1) HSP 1 Score: 168.703 bits (426), Expect = 6.816e-55 Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MSERQAVIKNADM ++MQEAA+N AT AMEK+NIEKDIAA+IKKEFDK +NPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 1 MSERQAVIKNADMTDEMQEAAINYATQAMEKFNIEKDIAAYIKKEFDKSFNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
BLAST of SMED30023766 vs. Planmine SMEST
Match: SMESG000003543.1 (SMESG000003543.1) HSP 1 Score: 164.466 bits (415), Expect = 3.127e-53 Identity = 75/88 (85.23%), Postives = 81/88 (92.05%), Query Frame = -3 Query: 122 SERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 385 S R+AVIKNADM +DMQ+ A+ CAT AMEK+NIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 4 SSRKAVIKNADMADDMQQEAIECATQAMEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 91
BLAST of SMED30023766 vs. Planmine SMEST
Match: SMESG000043518.1 (SMESG000043518.1) HSP 1 Score: 164.466 bits (415), Expect = 3.644e-53 Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = -3 Query: 122 RQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 379 R+AVIKNADM EDMQ+ AV CAT AMEK+NIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG Sbjct: 6 RKAVIKNADMSEDMQQDAVECATQAMEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 91
BLAST of SMED30023766 vs. Planmine SMEST
Match: SMESG000017229.1 (SMESG000017229.1) HSP 1 Score: 162.155 bits (409), Expect = 2.432e-52 Identity = 73/89 (82.02%), Postives = 81/89 (91.01%), Query Frame = -3 Query: 122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388 MSER+AVIKNADM +DMQ+ A++ A AMEKYN+EKDIAA+IKKEFDK YNPTWH IVGRNFG YVTHETKHFIYFYLGQVA+LLFKSG Sbjct: 1 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89 The following BLAST results are available for this feature:
BLAST of SMED30023766 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30023766 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of SMED30023766 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of SMED30023766 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of SMED30023766 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of SMED30023766 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30023766 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30023766 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30023766 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of SMED30023766 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30023766 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of SMED30023766 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of SMED30023766 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30023766 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30023766 ID=SMED30023766|Name=SMED30023766|organism=Schmidtea mediterranea sexual|type=transcript|length=525bpback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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