SMED30023766

Overview
NameSMED30023766
Smed IDSMED30023766
Length (bp)525
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30023766 (SMED30023766) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30023766 (SMED30023766) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30023766 (SMED30023766) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30023766 (SMED30023766) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30023766

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 13

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30023766SMESG000073811.1 dd_Smed_v4_116_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30023766SMESG000073811.1 dd_Smed_v4_116_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30023766SMESG000073811.1 dd_Smed_v4_116_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30023766SMESG000073811.1 dd_Smed_v4_116_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30023766SMESG000073811.1 dd_Smed_v4_116_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30023766SMESG000073811.1 Contig52091newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30023766SMESG000073811.1 Contig52091uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30023766SMESG000073811.1 dd_Smed_v6_116_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
head regionSMED30023766SMESG000073811.1 OX_Smed_1.0.19974ox_Smed_v2PMID:24238224
Kao et al., 2013		whole organism asexual adult RNA-sequencing evidence
epidermisSMED30023766SMESG000073811.1 dd_Smed_v6_116_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Category 3 cellSMED30023766SMESG000073811.1 dd_Smed_v6_116_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30023766SMESG000073811.1 dd_Smed_v4_116_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Category 4 cellSMED30023766SMESG000073811.1 dd_Smed_v4_116_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30023766 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000933:67698..68255 +2489
Homology
[Close]
BLAST of SMED30023766 vs. Ensembl Human
Match: DYNLL2 (dynein light chain LC8-type 2 [Source:HGNC Symbol;Acc:HGNC:24596])

HSP 1 Score: 171.4 bits (433), Expect = 1.359e-55
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476])

HSP 1 Score: 162.54 bits (410), Expect = 4.188e-52
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M +R+AVIKNADM E+MQ+ +V CAT A+EKYNIEKDIAA IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476])

HSP 1 Score: 162.54 bits (410), Expect = 4.188e-52
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M +R+AVIKNADM E+MQ+ +V CAT A+EKYNIEKDIAA IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476])

HSP 1 Score: 162.54 bits (410), Expect = 4.188e-52
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M +R+AVIKNADM E+MQ+ +V CAT A+EKYNIEKDIAA IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476])

HSP 1 Score: 162.54 bits (410), Expect = 4.188e-52
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M +R+AVIKNADM E+MQ+ +V CAT A+EKYNIEKDIAA IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Celegans
Match: dlc-1 (Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799])

HSP 1 Score: 166.007 bits (419), Expect = 8.148e-54
Identity = 75/89 (84.27%), Postives = 83/89 (93.26%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M +R+AVIKNADM +DMQ+ A++CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Celegans
Match: dlc-1 (Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799])

HSP 1 Score: 166.007 bits (419), Expect = 8.148e-54
Identity = 75/89 (84.27%), Postives = 83/89 (93.26%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M +R+AVIKNADM +DMQ+ A++CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Celegans
Match: dlc-1 (Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799])

HSP 1 Score: 166.007 bits (419), Expect = 8.148e-54
Identity = 75/89 (84.27%), Postives = 83/89 (93.26%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M +R+AVIKNADM +DMQ+ A++CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Celegans
Match: dlc-2 (Probable dynein light chain 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q21557])

HSP 1 Score: 80.1073 bits (196), Expect = 4.065e-20
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MSE +  +K  DM++  ++  ++    A   YNI+KD+AAF+K+E DK +  TWH I G+ FG  V++E  HFI     +V ++++K G
Sbjct:    1 MSEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGKCFGSRVSYEMGHFILLKCNKVNVMIYKCG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Celegans
Match: dlc-5 (Dynein Light Chain [Source:UniProtKB/TrEMBL;Acc:Q65XS9])

HSP 1 Score: 82.0333 bits (201), Expect = 1.019e-19
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = -3 
Query:  122 AVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 373
            A ++++ M   M++ A + A  ++  Y++E DIA  +K  FD+ Y P WHCI G++FG +VT E   FIYF +G +A +LFK+ 
Sbjct:   58 ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSFVTFEPDSFIYFRIGTIAFMLFKTS 141
[Close]
BLAST of SMED30023766 vs. Ensembl Fly
Match: Cdlc2 (gene:FBgn0026141 transcript:FBtr0077924)

HSP 1 Score: 168.703 bits (426), Expect = 8.433e-55
Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM E+MQ+ AV+CAT A+EKYNIEKDIAAFIKKEFDK YNPTWHCIVGRNFG YVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Fly
Match: Cdlc2 (gene:FBgn0026141 transcript:FBtr0305553)

HSP 1 Score: 168.703 bits (426), Expect = 8.433e-55
Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM E+MQ+ AV+CAT A+EKYNIEKDIAAFIKKEFDK YNPTWHCIVGRNFG YVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Fly
Match: Cdlc2 (gene:FBgn0026141 transcript:FBtr0077925)

HSP 1 Score: 168.703 bits (426), Expect = 8.433e-55
Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM E+MQ+ AV+CAT A+EKYNIEKDIAAFIKKEFDK YNPTWHCIVGRNFG YVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0070706)

HSP 1 Score: 167.548 bits (423), Expect = 2.750e-54
Identity = 76/89 (85.39%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM E+MQ+ AV+CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0070704)

HSP 1 Score: 167.548 bits (423), Expect = 2.750e-54
Identity = 76/89 (85.39%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM E+MQ+ AV+CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Zebrafish
Match: dynll2a (dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:ZDB-GENE-030828-11])

HSP 1 Score: 170.244 bits (430), Expect = 2.819e-55
Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M++R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Zebrafish
Match: dynll2b (dynein, light chain, LC8-type 2b [Source:ZFIN;Acc:ZDB-GENE-050320-132])

HSP 1 Score: 170.244 bits (430), Expect = 2.819e-55
Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M++R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Zebrafish
Match: dynll2a (dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:ZDB-GENE-030828-11])

HSP 1 Score: 170.244 bits (430), Expect = 2.819e-55
Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M++R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Zebrafish
Match: dynll1 (dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961])

HSP 1 Score: 167.548 bits (423), Expect = 3.202e-54
Identity = 77/89 (86.52%), Postives = 83/89 (93.26%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM E+MQ+ AV CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Zebrafish
Match: dynll1 (dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961])

HSP 1 Score: 167.548 bits (423), Expect = 3.202e-54
Identity = 77/89 (86.52%), Postives = 83/89 (93.26%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM E+MQ+ AV CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Xenopus
Match: dynll2 (dynein light chain LC8-type 2 [Source:NCBI gene;Acc:100038056])

HSP 1 Score: 171.4 bits (433), Expect = 1.232e-55
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Xenopus
Match: dynll1 (dynein light chain LC8-type 1 [Source:NCBI gene;Acc:448652])

HSP 1 Score: 169.474 bits (428), Expect = 8.835e-55
Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MSER+AVIKNADM E+MQ+ AV+CAT A+EK+NIEKDIAAFIKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSERKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Xenopus
Match: ENSXETT00000015639.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:2:48978690:48979872:1 gene:ENSXETG00000009974.1 transcript:ENSXETT00000015639.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 76.2554 bits (186), Expect = 6.666e-18
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 2 
Query:  119 LSGFK*KNSNLAQIKINEMFCFMSDIPSKVSPHNTVPGWIV*FIEFFFDKCSNIFLYVVFLHRCRGTVDSCFLHIFLHISIFNYCLTFRH 388
            L+ FK +N NLAQIK++E+ CFM  I +KVS ++ VP        +  D  SN+FL ++ LH   GTV+S  LH+F H+SI +  L+ RH
Sbjct:    3 LARFKEENCNLAQIKVDEVLCFMCYIAAKVSANDAVP-------IYLLDIGSNVFLNIILLHCLCGTVNSILLHVFRHVSILDNSLSVRH 85
[Close]
BLAST of SMED30023766 vs. Ensembl Xenopus
Match: rnf181 (ring finger protein 181 [Source:Xenbase;Acc:XB-GENE-964051])

HSP 1 Score: 61.2326 bits (147), Expect = 3.437e-12
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = -3 
Query:  128 AVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAA-FIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIY-FYLGQVAILLFK 373
             +I++ DM E+M+   +    TA EK+    + AA  IK+  DK +  +WH ++G  FG  +THE K+ +Y F+ G +AI ++K
Sbjct:   21 PLIRHTDMPEEMRVETMELCVTACEKFASNNESAAKMIKETMDKKFGSSWHVVIGEGFGFEITHEVKNLLYMFFGGSLAICVWK 104
[Close]
BLAST of SMED30023766 vs. Ensembl Mouse
Match: Dynll2 (dynein light chain LC8-type 2 [Source:MGI Symbol;Acc:MGI:1915347])

HSP 1 Score: 171.4 bits (433), Expect = 9.327e-56
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Mouse
Match: Dynll2 (dynein light chain LC8-type 2 [Source:MGI Symbol;Acc:MGI:1915347])

HSP 1 Score: 171.4 bits (433), Expect = 9.327e-56
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Mouse
Match: Dynll2 (dynein light chain LC8-type 2 [Source:MGI Symbol;Acc:MGI:1915347])

HSP 1 Score: 171.4 bits (433), Expect = 9.327e-56
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Mouse
Match: Dynll1 (dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457])

HSP 1 Score: 162.54 bits (410), Expect = 2.875e-52
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M +R+AVIKNADM E+MQ+ +V CAT A+EKYNIEKDIAA IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Mouse
Match: Dynll1 (dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457])

HSP 1 Score: 162.54 bits (410), Expect = 2.875e-52
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M +R+AVIKNADM E+MQ+ +V CAT A+EKYNIEKDIAA IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. UniProt/SwissProt
Match: sp|Q78P75|DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.524e-55
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. UniProt/SwissProt
Match: sp|Q9D0M5|DYL2_MOUSE (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.524e-55
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. UniProt/SwissProt
Match: sp|Q96FJ2|DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.524e-55
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. UniProt/SwissProt
Match: sp|Q3MHR3|DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.524e-55
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. UniProt/SwissProt
Match: sp|O02414|DYL1_HELCR (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.866e-54
Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MSER+AVIKNADM EDMQ+ AV+CAT A+EK+NIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89
[Close]
BLAST of SMED30023766 vs. TrEMBL
Match: A0A158QP59 (Dynein light chain OS=Haemonchus placei OX=6290 GN=HPLM_LOCUS11927 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.446e-54
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = -3 
Query:  122 ITVQINKLLIKLLSKMSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 433
            IT + + L  + L KM +R+AVIKNADM EDMQ+ A++CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   36 ITAKCSSLATQFLQKMVDRKAVIKNADMSEDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 139
[Close]
BLAST of SMED30023766 vs. TrEMBL
Match: A0A3P8VV78 (Dynein light chain OS=Cynoglossus semilaevis OX=244447 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.145e-54
Identity = 88/122 (72.13%), Postives = 98/122 (80.33%), Query Frame = -3 
Query:  122 CQNVSKTN*NYSTKLFFITVQ-INKLLIKLLSKMSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 484
            CQ V + +  YS +L F T   +N  L    + MS+R+AVIKNADM EDMQ+ AV CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   13 CQPV-RGSCRYSCRLLFQTSNTVNATLTG--ASMSDRKAVIKNADMSEDMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 131
[Close]
BLAST of SMED30023766 vs. TrEMBL
Match: H3BFR6 (Dynein light chain OS=Latimeria chalumnae OX=7897 GN=DYNLL1 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 9.224e-54
Identity = 82/97 (84.54%), Postives = 88/97 (90.72%), Query Frame = -3 
Query:  122 LLIKLLSKMSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 412
            LL+   + MSER+AVIKNADM EDMQ+ AV+CAT A+EKYNIEKDIAAFIKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   19 LLLHPQANMSERKAVIKNADMPEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 115
[Close]
BLAST of SMED30023766 vs. TrEMBL
Match: Q0P4G1 (Dynein light chain (Fragment) OS=Danio rerio OX=7955 GN=dynll2a PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.123e-53
Identity = 86/118 (72.88%), Postives = 94/118 (79.66%), Query Frame = -3 
Query:  122 VSKTN*NYSTKLFFITVQINKLLIKLLSKMSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 475
             SK +   +TK      QI    I L   M++R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    8 ASKGHPQKTTKATDFASQIYLAKILLTDNMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 125
[Close]
BLAST of SMED30023766 vs. TrEMBL
Match: A0A151X3V7 (Dynein light chain OS=Trachymyrmex zeteki OX=64791 GN=ALC60_06064 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.375e-53
Identity = 80/105 (76.19%), Postives = 91/105 (86.67%), Query Frame = -3 
Query:  122 FITVQINKLLIKLLSKMSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 436
            + TV++ +       KMS+R+AVIKNADM E+MQ+ AV+CAT A+EKYNIEKDIAAFIKKEFDK YNPTWHCIVGRNFG YVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    7 YATVKVVRFPRPRTDKMSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 111
[Close]
BLAST of SMED30023766 vs. Ensembl Cavefish
Match: ENSAMXT00000047143.1 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:103041528])

HSP 1 Score: 170.244 bits (430), Expect = 2.389e-55
Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M++R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Cavefish
Match: dynll2b (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:103041528])

HSP 1 Score: 170.244 bits (430), Expect = 2.389e-55
Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M++R+AVIKNADM EDMQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Cavefish
Match: dynll1 (dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961])

HSP 1 Score: 149.058 bits (375), Expect = 1.308e-46
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = -3 
Query:  149 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQ 388
            MS+R+AVIKNADM E+MQ+ AV CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQ
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
[Close]
BLAST of SMED30023766 vs. Ensembl Cavefish
Match: ENSAMXT00000025088.2 (pep primary_assembly:Astyanax_mexicanus-2.0:6:35277932:35282302:-1 gene:ENSAMXG00000024374.2 transcript:ENSAMXT00000025088.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 73.9442 bits (180), Expect = 2.706e-17
Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = 2 
Query:  137 KNSNLAQIKINEMFCFMSDIPSKVSPHNTVPGWIV*FIEFF---FDKCSNIFLYVVFLHRCRGTVDSCFLHIFLHISIFNYCLTFRH 388
            +N +LAQ++++E+   + D+ ++V  H+ VPG +V  ++     FD  S++ L VVFL    GT +S  LH+  H+ IF++CL  RH
Sbjct:    9 QNCHLAQVEVDEVLGLVGDVAAEVPAHDAVPGGVVLLVKLLTHLFDVGSDVLLDVVFLQSLSGTFNSILLHLLRHVRIFDHCLPVRH 95
[Close]
BLAST of SMED30023766 vs. Ensembl Cavefish
Match: ENSAMXT00000013314.2 (pep primary_assembly:Astyanax_mexicanus-2.0:1:23335261:23337700:1 gene:ENSAMXG00000012944.2 transcript:ENSAMXT00000013314.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 68.1662 bits (165), Expect = 2.522e-15
Identity = 30/92 (32.61%), Postives = 54/92 (58.70%), Query Frame = 2 
Query:  113 IKLSGFK*KNSNLAQIKINEMFCFMSDIPSKVSPHNTVPGWIV*FIEFFFDKCSNIFLYVVFLHRCRGTVDSCFLHIFLHISIFNYCLTFRH 388
            I  + F+ +  +LAQ++++E+   + D+ ++V  HN VP W+V  + + FD   ++ LYVV LH    TVD   LH+  H+S+ ++  +  H
Sbjct:    1 IASARFEQEYGHLAQVEVDEVLRLVGDVTAEVPAHNAVPSWVV-LLAYLFDVRCDVLLYVVLLHCLCCTVDCVLLHVLRHVSVLDHSFSVSH 91
[Close]
BLAST of SMED30023766 vs. Ensembl Yeast
Match: DYN2 (Cytoplasmic light chain dynein, microtubule motor protein; required for intracellular transport and cell division; involved in mitotic spindle positioning; forms complex with dynein intermediate chain Pac11p that promotes Dyn1p homodimerization, potentiates motor processivity; Dyn2p-Pac11p complex important for interaction of dynein motor complex with dynactin complex; acts as molecular glue to dimerize, stabilize Nup82-Nsp1-Nup159 complex module of cytoplasmic pore filaments [Source:SGD;Acc:S000002832])

HSP 1 Score: 97.0561 bits (240), Expect = 1.846e-27
Identity = 39/91 (42.86%), Postives = 63/91 (69.23%), Query Frame = -3 
Query:  125 LSKMSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKS 397
            +S  ++   ++K +D+ + ++E  +  +  A++KY +E+DIA  +KK+ D  Y  TWH IVG+NFG YVTHE  HF+YFY+G +A L+FK+
Sbjct:    1 MSDENKSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAFLVFKT 91
[Close]
BLAST of SMED30023766 vs. Ensembl Nematostella
Match: EDO44582 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVI5])

HSP 1 Score: 168.318 bits (425), Expect = 4.759e-55
Identity = 78/89 (87.64%), Postives = 82/89 (92.13%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MSER+AVIKNADM EDMQ  A+ CAT A+EK+NIEKDIAAFIKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSERKAVIKNADMAEDMQTDAIECATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Nematostella
Match: EDO38557 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SCP2])

HSP 1 Score: 62.003 bits (149), Expect = 3.448e-13
Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = -3 
Query:  128 VIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAA-FIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIY-FYLGQVAILLFK 370
            +I+ +DM ++M+  A+    TA EK++   + AA  IK+  DK +  +WH +VG  FG  +THE ++ +Y F+ G  AI ++K
Sbjct:   26 LIRYSDMNDEMRTEAMELCVTACEKFSNNNETAAKMIKESMDKKFGASWHAVVGEGFGFEITHEVRNLLYMFFGGTTAICIWK 108
[Close]
BLAST of SMED30023766 vs. Ensembl Medaka
Match: dynll1 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101171417])

HSP 1 Score: 169.474 bits (428), Expect = 4.681e-55
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+R+AVIKNADM EDMQ+ AV CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Medaka
Match: ENSORLT00000005747.2 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101162462])

HSP 1 Score: 168.318 bits (425), Expect = 1.310e-54
Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            M++R+AVIKNADM E+MQ+ AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MTDRKAVIKNADMSEEMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Medaka
Match: DYNLL2 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101174042])

HSP 1 Score: 164.081 bits (414), Expect = 6.036e-53
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MS+++AVIKNADM ++MQ+ AV+CA  AMEKYNIEKDIAA++KKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDKKAVIKNADMSDEMQQDAVDCAMQAMEKYNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Ensembl Medaka
Match: ENSORLT00000028916.1 (pep primary_assembly:ASM223467v1:9:6243543:6247014:-1 gene:ENSORLG00000022487.1 transcript:ENSORLT00000028916.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 70.0922 bits (170), Expect = 5.999e-16
Identity = 32/90 (35.56%), Postives = 53/90 (58.89%), Query Frame = 2 
Query:  119 LSGFK*KNSNLAQIKINEMFCFMSDIPSKVSPHNTVPGWIV*FIEFFFDKCSNIFLYVVFLHRCRGTVDSCFLHIFLHISIFNYCLTFRH 388
            LS  + +N +L Q+++NEM   +S + ++V P+N VP  +V  +E       ++FL VV L    GT+    LH+  H+ IF++CL+ RH
Sbjct:    3 LSRLEQQNGHLTQVEVNEMLGLVSHVAAEVPPNNAVPSRVVFLVELL-----DVFLDVVLLQGLCGTLHGVLLHVLRHVGIFDHCLSVRH 87
[Close]
BLAST of SMED30023766 vs. Ensembl Medaka
Match: ENSORLT00000006686.2 (pep primary_assembly:ASM223467v1:14:12601680:12602092:1 gene:ENSORLG00000005302.2 transcript:ENSORLT00000006686.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 70.0922 bits (170), Expect = 8.285e-16
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 2 
Query:  122 SGFK*KNSNLAQIKINEMFCFMSDIPSKVSPHNTVPGWIV*FIEFF-----FDKCSNIFLYVVFLHRCRGTVDSCFLHIFLHISIFNYCL 376
            +G K +NS+L Q++++EM   +  I +KV P+N VP  +V  ++F       D CSNIFL +V LH   GTV    LH   H+ IF++ L
Sbjct:   19 AGLKQQNSHLTQVEVDEMLRLVGHIATKVPPNNAVPCRVVFLVKFLDPTYLLDICSNIFLDIVLLHGLHGTVHCILLHFIRHVCIFDHRL 108
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BLAST of SMED30023766 vs. Planmine SMEST
Match: SMESG000073811.1 (SMESG000073811.1)

HSP 1 Score: 187.963 bits (476), Expect = 1.829e-62
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Planmine SMEST
Match: SMESG000005286.1 (SMESG000005286.1)

HSP 1 Score: 168.703 bits (426), Expect = 6.816e-55
Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MSERQAVIKNADM ++MQEAA+N AT AMEK+NIEKDIAA+IKKEFDK +NPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSERQAVIKNADMTDEMQEAAINYATQAMEKFNIEKDIAAYIKKEFDKSFNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
[Close]
BLAST of SMED30023766 vs. Planmine SMEST
Match: SMESG000003543.1 (SMESG000003543.1)

HSP 1 Score: 164.466 bits (415), Expect = 3.127e-53
Identity = 75/88 (85.23%), Postives = 81/88 (92.05%), Query Frame = -3 
Query:  122 SERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 385
            S R+AVIKNADM +DMQ+ A+ CAT AMEK+NIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    4 SSRKAVIKNADMADDMQQEAIECATQAMEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 91
[Close]
BLAST of SMED30023766 vs. Planmine SMEST
Match: SMESG000043518.1 (SMESG000043518.1)

HSP 1 Score: 164.466 bits (415), Expect = 3.644e-53
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = -3 
Query:  122 RQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 379
            R+AVIKNADM EDMQ+ AV CAT AMEK+NIEKDIAA+IKKEFDK YNPTWHCIVGRNFG YVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    6 RKAVIKNADMSEDMQQDAVECATQAMEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 91
[Close]
BLAST of SMED30023766 vs. Planmine SMEST
Match: SMESG000017229.1 (SMESG000017229.1)

HSP 1 Score: 162.155 bits (409), Expect = 2.432e-52
Identity = 73/89 (82.02%), Postives = 81/89 (91.01%), Query Frame = -3 
Query:  122 MSERQAVIKNADMQEDMQEAAVNCATTAMEKYNIEKDIAAFIKKEFDKLYNPTWHCIVGRNFGRYVTHETKHFIYFYLGQVAILLFKSG 388
            MSER+AVIKNADM +DMQ+ A++ A  AMEKYN+EKDIAA+IKKEFDK YNPTWH IVGRNFG YVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSERKAVIKNADMSDDMQQEAIDVALQAMEKYNVEKDIAAYIKKEFDKKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89
The following BLAST results are available for this feature:
BLAST of SMED30023766 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
DYNLL21.359e-5588.76dynein light chain LC8-type 2 [Source:HGNC Symbol;... [more]
DYNLL14.188e-5284.27dynein light chain LC8-type 1 [Source:HGNC Symbol;... [more]
DYNLL14.188e-5284.27dynein light chain LC8-type 1 [Source:HGNC Symbol;... [more]
DYNLL14.188e-5284.27dynein light chain LC8-type 1 [Source:HGNC Symbol;... [more]
DYNLL14.188e-5284.27dynein light chain LC8-type 1 [Source:HGNC Symbol;... [more]
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BLAST of SMED30023766 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
dlc-18.148e-5484.27Dynein light chain 1, cytoplasmic [Source:UniProt... [more]
dlc-18.148e-5484.27Dynein light chain 1, cytoplasmic [Source:UniProt... [more]
dlc-18.148e-5484.27Dynein light chain 1, cytoplasmic [Source:UniProt... [more]
dlc-24.065e-2038.20Probable dynein light chain 2, cytoplasmic [Sourc... [more]
dlc-51.019e-1940.48Dynein Light Chain [Source:UniProtKB/TrEMBL;Acc:Q... [more]
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BLAST of SMED30023766 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Cdlc28.433e-5586.52gene:FBgn0026141 transcript:FBtr0077924[more]
Cdlc28.433e-5586.52gene:FBgn0026141 transcript:FBtr0305553[more]
Cdlc28.433e-5586.52gene:FBgn0026141 transcript:FBtr0077925[more]
ctp2.750e-5485.39gene:FBgn0011760 transcript:FBtr0070706[more]
ctp2.750e-5485.39gene:FBgn0011760 transcript:FBtr0070704[more]
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BLAST of SMED30023766 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
dynll2a2.819e-5587.64dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:... [more]
dynll2b2.819e-5587.64dynein, light chain, LC8-type 2b [Source:ZFIN;Acc:... [more]
dynll2a2.819e-5587.64dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:... [more]
dynll13.202e-5486.52dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:Z... [more]
dynll13.202e-5486.52dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:Z... [more]
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BLAST of SMED30023766 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4
Match NameE-valueIdentityDescription
dynll21.232e-5588.76dynein light chain LC8-type 2 [Source:NCBI gene;Ac... [more]
dynll18.835e-5587.64dynein light chain LC8-type 1 [Source:NCBI gene;Ac... [more]
ENSXETT00000015639.16.666e-1844.44pep primary_assembly:Xenopus_tropicalis_v9.1:2:489... [more]
rnf1813.437e-1235.71ring finger protein 181 [Source:Xenbase;Acc:XB-GEN... [more]
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BLAST of SMED30023766 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Dynll29.327e-5688.76dynein light chain LC8-type 2 [Source:MGI Symbol;A... [more]
Dynll29.327e-5688.76dynein light chain LC8-type 2 [Source:MGI Symbol;A... [more]
Dynll29.327e-5688.76dynein light chain LC8-type 2 [Source:MGI Symbol;A... [more]
Dynll12.875e-5284.27dynein light chain LC8-type 1 [Source:MGI Symbol;A... [more]
Dynll12.875e-5284.27dynein light chain LC8-type 1 [Source:MGI Symbol;A... [more]
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BLAST of SMED30023766 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q78P75|DYL2_RAT6.524e-5588.76Dynein light chain 2, cytoplasmic OS=Rattus norveg... [more]
sp|Q9D0M5|DYL2_MOUSE6.524e-5588.76Dynein light chain 2, cytoplasmic OS=Mus musculus ... [more]
sp|Q96FJ2|DYL2_HUMAN6.524e-5588.76Dynein light chain 2, cytoplasmic OS=Homo sapiens ... [more]
sp|Q3MHR3|DYL2_BOVIN6.524e-5588.76Dynein light chain 2, cytoplasmic OS=Bos taurus OX... [more]
sp|O02414|DYL1_HELCR6.866e-5486.52Dynein light chain LC6, flagellar outer arm OS=Hel... [more]
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BLAST of SMED30023766 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A158QP595.446e-5477.88Dynein light chain OS=Haemonchus placei OX=6290 GN... [more]
A0A3P8VV787.145e-5472.13Dynein light chain OS=Cynoglossus semilaevis OX=24... [more]
H3BFR69.224e-5484.54Dynein light chain OS=Latimeria chalumnae OX=7897 ... [more]
Q0P4G11.123e-5372.88Dynein light chain (Fragment) OS=Danio rerio OX=79... [more]
A0A151X3V71.375e-5376.19Dynein light chain OS=Trachymyrmex zeteki OX=64791... [more]
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BLAST of SMED30023766 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000047143.12.389e-5587.64dynein light chain 2, cytoplasmic [Source:NCBI gen... [more]
dynll2b2.389e-5587.64dynein light chain 2, cytoplasmic [Source:NCBI gen... [more]
dynll11.308e-4685.00dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:Z... [more]
ENSAMXT00000025088.22.706e-1736.78pep primary_assembly:Astyanax_mexicanus-2.0:6:3527... [more]
ENSAMXT00000013314.22.522e-1532.61pep primary_assembly:Astyanax_mexicanus-2.0:1:2333... [more]
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BLAST of SMED30023766 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023766 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
DYN21.846e-2742.86Cytoplasmic light chain dynein, microtubule motor ... [more]
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BLAST of SMED30023766 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO445824.759e-5587.64Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO385573.448e-1336.14Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30023766 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
dynll14.681e-5587.64dynein light chain 2, cytoplasmic [Source:NCBI gen... [more]
ENSORLT00000005747.21.310e-5486.52dynein light chain 2, cytoplasmic [Source:NCBI gen... [more]
DYNLL26.036e-5383.15dynein light chain 2, cytoplasmic [Source:NCBI gen... [more]
ENSORLT00000028916.15.999e-1635.56pep primary_assembly:ASM223467v1:9:6243543:6247014... [more]
ENSORLT00000006686.28.285e-1640.00pep primary_assembly:ASM223467v1:14:12601680:12602... [more]
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BLAST of SMED30023766 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000073811.11.829e-6298.88SMESG000073811.1[more]
SMESG000005286.16.816e-5587.64SMESG000005286.1[more]
SMESG000003543.13.127e-5385.23SMESG000003543.1[more]
SMESG000043518.13.644e-5388.37SMESG000043518.1[more]
SMESG000017229.12.432e-5282.02SMESG000017229.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30023766 ID=SMED30023766|Name=SMED30023766|organism=Schmidtea mediterranea sexual|type=transcript|length=525bp
TCGCATTTTTTTTTTTTTTTTTTAAAAGACTAAATTTCAATATATATTTA
TTAAAATCCTAACAAAAAACTCTGATAAAAATCAAAATTTTATTCCAGAA
TTATTTTATGGAATAAAATTATCCGGATTTAAATAAAAGAATAGCAACTT
GGCCCAGATAAAAATAAATGAAATGTTTTGTTTCATGAGTGACATACCTT
CCAAAGTTTCTCCCCACAATACAGTGCCAGGTTGGATTGTATAATTTATC
GAATTCTTTTTTGATAAATGCAGCAATATCTTTCTCTATGTTGTATTTCT
CCATCGCTGTCGTGGCACAGTTGACAGCTGCTTCCTGCATATCTTCTTGC
ATATCAGCATTTTTAATTACTGCTTGACGTTCAGACATTTTTGACAACAA
TTTTATGAGCAGCTTATTTATCTGAACAGTAATAAAAAATAGTTTAGTAG
AATAGTTTCAATTTGTTTTTGATACATTTTGGCATTGTCACTGCCTTTCA
GAAAAACTGCGTTGCTTTTTAATTC
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000018Category 4 cell
PLANA:0000034epidermis
PLANA:0000035Category 3 cell
PLANA:0000418head
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR037177DLC_sf
IPR019763Dynein_light_1/2_CS
IPR001372Dynein_light_chain_typ-1/2
Vocabulary: cellular component
TermDefinition
GO:0005875microtubule associated complex
GO:0030286dynein complex
Vocabulary: biological process
TermDefinition
GO:0007017microtubule-based process
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001372Dynein light chain, type 1/2SMARTSM01375Dynein_light_2coord: 1..88
e-value: 1.3E-59
score: 214.0
IPR001372Dynein light chain, type 1/2PFAMPF01221Dynein_lightcoord: 6..88
e-value: 1.7E-41
score: 140.4
IPR001372Dynein light chain, type 1/2PANTHERPTHR11886DYNEIN LIGHT CHAINcoord: 1..89
IPR037177Dynein light chain superfamilyGENE3DG3DSA:3.30.740.10coord: 1..89
e-value: 6.1E-47
score: 159.6
IPR037177Dynein light chain superfamilySUPERFAMILYSSF54648DLCcoord: 1..89
NoneNo IPR availablePANTHERPTHR11886:SF62DYNEIN LIGHT CHAINcoord: 1..89
IPR019763Dynein light chain, type 1/2, conserved sitePROSITEPS01239DYNEIN_LIGHT_1coord: 55..69