sine oculis-1/2

Overview


Name	sine oculis-1/2 (AFC87779.1)
Smed ID	SMED30023736
Length (bp)	1537

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of sine oculis-1/2 (SMED30023736) t-SNE clustered cells

Violin plots show distribution of expression levels for sine oculis-1/2 (SMED30023736) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of sine oculis-1/2 (SMED30023736) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for sine oculis-1/2 (SMED30023736) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30023736

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 9

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
head region	SMED30023736	h1SMcG0018009	SmedASXL_013781	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
parapharyngeal region	SMED30023736	h1SMcG0018009	SmedASXL_013781	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
Smed sexual biotype	SMED30023736	h1SMcG0018009	Contig13603	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30023736	h1SMcG0018009	Contig13603	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
pharynx	SMED30023736	h1SMcG0018009	dd_Smed_v4_15436_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30023736	h1SMcG0018009	dd_Smed_v4_15436_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30023736	h1SMcG0018009	dd_Smed_v4_15436_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30023736	h1SMcG0018009	dd_Smed_v4_15436_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
optic cup	SMED30023736	h1SMcG0018009	JN983827.1	smed_ncbi_20240424	PMID:21852957 Lapan et al., 2011

Note: Hover over icons to view figure legend

Homology

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BLAST of sine oculis-1/2 vs. Ensembl Human
Match: SIX1 (SIX homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10887])

HSP 1 Score: 320.087 bits (819), Expect = 2.611e-106
Identity = 140/182 (76.92%), Postives = 159/182 (87.36%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            + GFTQEQVACVCEVL+ GGN++RL  F+WSLP C  L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHY+E EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++
Sbjct:    6 SFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187

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BLAST of sine oculis-1/2 vs. Ensembl Human
Match: SIX2 (SIX homeobox 2 [Source:HGNC Symbol;Acc:HGNC:10888])

HSP 1 Score: 319.316 bits (817), Expect = 6.546e-106
Identity = 141/179 (78.77%), Postives = 158/179 (88.27%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENK 839
             GFTQEQVACVCEVL+ GGNI+RL  F+WSLP C+ L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHYIE EK++GR LGAV KYR+RRK+PLPR+IWDGEETSYCFKEKSR+VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K
Sbjct:    7 FGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHAKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAK 185

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Human
Match: SIX4 (SIX homeobox 4 [Source:HGNC Symbol;Acc:HGNC:10890])

HSP 1 Score: 244.973 bits (624), Expect = 2.040e-74
Identity = 109/174 (62.64%), Postives = 133/174 (76.44%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDR 824
            + F+ + VACVCE L+ GGN+DRLA F+WSLP    L+ NES+L A+A VAFH+  + ELY ILES++F   NH  LQ LW +A Y E E+ +GR LGAV KYR+RRK+PLPRTIWDGEET YCFKEKSR  L++ Y  N YPSP EK+ LA++T L+ TQVSNWFKNRRQRDR
Sbjct:   98 LAFSPDHVACVCEALQQGGNLDRLARFLWSLPQSDLLRGNESLLKARALVAFHQGIYPELYSILESHSFESANHPLLQQLWYKARYTEAERARGRPLGAVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRNALKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDR 271

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Human
Match: SIX4 (SIX homeobox 4 [Source:HGNC Symbol;Acc:HGNC:10890])

HSP 1 Score: 247.669 bits (631), Expect = 7.439e-73
Identity = 109/174 (62.64%), Postives = 133/174 (76.44%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDR 824
            + F+ + VACVCE L+ GGN+DRLA F+WSLP    L+ NES+L A+A VAFH+  + ELY ILES++F   NH  LQ LW +A Y E E+ +GR LGAV KYR+RRK+PLPRTIWDGEET YCFKEKSR  L++ Y  N YPSP EK+ LA++T L+ TQVSNWFKNRRQRDR
Sbjct:  106 LAFSPDHVACVCEALQQGGNLDRLARFLWSLPQSDLLRGNESLLKARALVAFHQGIYPELYSILESHSFESANHPLLQQLWYKARYTEAERARGRPLGAVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRNALKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDR 279

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Human
Match: SIX6 (SIX homeobox 6 [Source:HGNC Symbol;Acc:HGNC:10892])

HSP 1 Score: 229.565 bits (584), Expect = 1.248e-71
Identity = 101/173 (58.38%), Postives = 135/173 (78.03%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLP----PCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNR 809
            + F+ +QVA VCE LE  G+++RL  F+WSLP     C+ L  NESVL A+A VAFH  N++ELY ILE++ F+  +H KLQALWL+AHY E EK++GR LG V KYR+R+K+PLPRTIWDGE+ ++CFKE++R +LR+WYL +PYP+P +K++LA+ T LT TQV NWFKNR
Sbjct:    7 LNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIVAFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNR 179

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BLAST of sine oculis-1/2 vs. Ensembl Celegans
Match: ceh-33 (Homeobox protein ceh-33 [Source:UniProtKB/Swiss-Prot;Acc:Q94166])

HSP 1 Score: 242.276 bits (617), Expect = 9.325e-77
Identity = 109/174 (62.64%), Postives = 135/174 (77.59%), Query Frame = 3

Query:  309 FTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAA 830
            +++EQVAC+CE L N     +L+ F+W++    +++ N+ +L A+A +AFH  NFKELYRI+ES+ F+  +H  LQ  WL AHY E EKI+GR LGAV KYRIRRKYPLPRTIWDGEETSYCF++KSR +LR WY  N YPSPREK++LAE T LT TQVSNWFKNRRQRDRA 
Sbjct:   20 YSEEQVACICEALSNDAR--KLSQFVWTVLERDEMRNNQYILKAQAFLAFHSNNFKELYRIIESHHFASEHHLPLQEWWLNAHYHEAEKIRGRQLGAVGKYRIRRKYPLPRTIWDGEETSYCFRDKSRVLLRDWYCRNSYPSPREKRELAEKTHLTVTQVSNWFKNRRQRDRAG 191

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Celegans
Match: ceh-34 (Homeobox protein ceh-34 [Source:UniProtKB/Swiss-Prot;Acc:Q94165])

HSP 1 Score: 202.601 bits (514), Expect = 1.506e-61
Identity = 101/188 (53.72%), Postives = 127/188 (67.55%), Query Frame = 3

Query:  294 SGAMGFTQEQVACVCEVLEN----GGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            +    ++++++ C+CE L N     G  ++LA FI++LP C Q+   ESVL A+A V F  QN+K LY++LE   FSPHNH  LQ LWL AHY E  K K R LGAV KYRIR+K P P TIWDGEET+YCFK KSR VLR  Y    YPS  +K+ LA+ T L+  QVSNWFKN+RQR+RAA   D+
Sbjct:   12 TATTSYSEQEIVCICESLFNEGLQTGRTEQLANFIYNLPQCYQVM--ESVLKAQALVYFTTQNWKMLYKLLECSKFSPHNHTVLQNLWLDAHYKEAAKTKDRELGAVCKYRIRKKNPFPNTIWDGEETNYCFKSKSRNVLRDAYKKCQYPSVEDKRRLAQQTELSIIQVSNWFKNKRQRERAAGQLDR 197

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Celegans
Match: ceh-32 (Homeobox protein ceh-32 [Source:UniProtKB/Swiss-Prot;Acc:Q23175])

HSP 1 Score: 205.682 bits (522), Expect = 1.696e-60
Identity = 100/182 (54.95%), Postives = 135/182 (74.18%), Query Frame = 3

Query:  309 FTQEQVACVCEVLENGGNIDRLALFIWSLPP--CQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKH 848
             T +Q+   CE LE  G++D L  F+ ++PP   Q++  NE+ L A+A V FH  +F+ELY ILE+  FSP  H KLQ +W +AHY E+EK +G+SL AV KYR+R+KYP+PRTIWDGE+ ++CFKE++R++LR+WYL +PYP+P +KK+LA  T LT  QV NWFKNRRQRDRAA  K+K 
Sbjct:   68 LTADQIVKTCEQLETDGDVDGLFRFMCTIPPQKTQEVAGNEAFLRARALVCFHASHFRELYAILENNKFSPKYHPKLQEMWHEAHYREQEKNRGKSLCAVDKYRVRKKYPMPRTIWDGEQKTHCFKERTRSLLREWYLKDPYPNPPKKKELANATGLTQMQVGNWFKNRRQRDRAAAAKNKQ 249

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Celegans
Match: unc-39 (Homeobox protein unc-39 [Source:UniProtKB/Swiss-Prot;Acc:O17894])

HSP 1 Score: 134.806 bits (338), Expect = 3.098e-35
Identity = 84/255 (32.94%), Postives = 130/255 (50.98%), Query Frame = 3

Query:   96 NICDQFSNSGDYKSLDGPVVSSPSESDSNVNYASFHQFGMVSYEQSCLAAPALDYQTNQDSVISPDSGAMG-----FTQEQVACVCEVLENGGNIDRLALFIWSL-----PPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLH-NPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRA 827
            +I DQFS+SG      GP    P E  S++   S           S +  P+    +   S+ SP   A G     ++ EQ+  +   L    + DRL  F   L     P       +E+++ A     +H   F+ L+ +L +  F   ++  LQ +W  A Y E +  +G+ L  V KYR+RRK+P P+TIWDGEE  Y FK+ SR  L+Q++ + + YP+  +K++++  T L   Q+SNWFKNRRQRD++
Sbjct:   44 HISDQFSSSG------GP----PYELSSHILTPS-----------SVIPTPSPSVASA--SISSPTIPAFGCTMSEYSMEQMEAISTSLFQARDGDRLVAFFKQLESLYGPNAVDHLRSEAIIVAYTYALYHSNEFETLFHLLSNRHFQQRHYNDLQDIWHHARYKESQLKRGKELNPVEKYRLRRKFPAPKTIWDGEEIVYSFKDSSRKFLKQFFRNVSEYPTQEQKREISRATGLKIVQISNWFKNRRQRDKS 275

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Celegans
Match: unc-62 (Homeobox protein unc-62 [Source:UniProtKB/Swiss-Prot;Acc:Q9N5D6])

HSP 1 Score: 51.6026 bits (122), Expect = 9.867e-7
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 3

Query:  675 FKEKSRAVLRQWYLHN---PYPSPREKKDLAEMTSLTTTQVSNWFKNRRQR 818
            F +++   LRQW   N   PYPS  +KK LA+ T LT  QV+NWF N R+R
Sbjct:  358 FPKQATNRLRQWLFQNLTHPYPSEEQKKQLAKETGLTILQVNNWFINARRR 408

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BLAST of sine oculis-1/2 vs. Ensembl Fly
Match: so (gene:FBgn0003460 transcript:FBtr0088970)

HSP 1 Score: 316.235 bits (809), Expect = 3.164e-103
Identity = 140/181 (77.35%), Postives = 157/181 (86.74%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKD 842
            + GFTQEQVACVCEVL+  GNI+RL  F+WSLP C +LQ NESVL AKA VAFHR  +KELYR+LE + FS  NH KLQALWL+AHY+E EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR+VLR WY HNPYPSPREK+DLAE T LTTTQVSNWFKNRRQRDRAAE+KD
Sbjct:  100 SFGFTQEQVACVCEVLQQAGNIERLGRFLWSLPQCDKLQLNESVLKAKAVVAFHRGQYKELYRLLEHHHFSAQNHAKLQALWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYSHNPYPSPREKRDLAEATGLTTTQVSNWFKNRRQRDRAAEHKD 280

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Fly
Match: Six4 (gene:FBgn0027364 transcript:FBtr0078274)

HSP 1 Score: 232.646 bits (592), Expect = 2.999e-71
Identity = 105/183 (57.38%), Postives = 135/183 (73.77%), Query Frame = 3

Query:  291 DSGAMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENK 839
            D+  + F+ +Q+ C+CE L+  G+I++L  F+ SLPP +  +TNESVL A+A VA++   F ELY +LE++ FS   H  LQ LW +AHY E EK++GR LGAV KYR+R+KYPLP+TIWDGEET YCFKEKSR  L+  YL N YP+P EKK LA+ T LT TQVSNWFKNRRQRDR  + +
Sbjct:  175 DAKMLQFSTDQIQCMCEALQQKGDIEKLTTFLCSLPPSEFFKTNESVLRARAMVAYNLGQFHELYNLLETHCFSIKYHVDLQNLWFKAHYKEAEKVRGRPLGAVDKYRLRKKYPLPKTIWDGEETVYCFKEKSRNALKDCYLTNRYPTPDEKKTLAKKTGLTLTQVSNWFKNRRQRDRTPQQR 357

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Fly
Match: Six4 (gene:FBgn0027364 transcript:FBtr0078275)

HSP 1 Score: 232.646 bits (592), Expect = 2.999e-71
Identity = 105/183 (57.38%), Postives = 135/183 (73.77%), Query Frame = 3

Query:  291 DSGAMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENK 839
            D+  + F+ +Q+ C+CE L+  G+I++L  F+ SLPP +  +TNESVL A+A VA++   F ELY +LE++ FS   H  LQ LW +AHY E EK++GR LGAV KYR+R+KYPLP+TIWDGEET YCFKEKSR  L+  YL N YP+P EKK LA+ T LT TQVSNWFKNRRQRDR  + +
Sbjct:  175 DAKMLQFSTDQIQCMCEALQQKGDIEKLTTFLCSLPPSEFFKTNESVLRARAMVAYNLGQFHELYNLLETHCFSIKYHVDLQNLWFKAHYKEAEKVRGRPLGAVDKYRLRKKYPLPKTIWDGEETVYCFKEKSRNALKDCYLTNRYPTPDEKKTLAKKTGLTLTQVSNWFKNRRQRDRTPQQR 357

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Fly
Match: Optix (gene:FBgn0025360 transcript:FBtr0088865)

HSP 1 Score: 217.238 bits (552), Expect = 2.836e-64
Identity = 105/208 (50.48%), Postives = 151/208 (72.60%), Query Frame = 3

Query:  246 PALDYQTNQDSVISPDS----GAMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPC----QQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            P+  +      +I+P        + F+  QV  VC+ LE+ G+I+RLA F+WSLP       ++   E+VL A+A VA+H  NF+ELY I+E++ F+  ++ KLQA+WL+AHYIE EK++GRSLG V KYR+R+K+PLP TIWDGE+ ++CFKE++R++LR+WYL +PYP+P +K++LA+ T L  TQV NWFKNRRQRDRAA  K++
Sbjct:   12 PSESFSPTHHQIIAPSPILAVPTLAFSAAQVEIVCKTLEDSGDIERLARFLWSLPVALPNMHEILNCEAVLRARAVVAYHVGNFRELYAIIENHKFTKASYGKLQAMWLEAHYIEAEKLRGRSLGPVDKYRVRKKFPLPPTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAKATGLNPTQVGNWFKNRRQRDRAAAAKNR 219

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Fly
Match: Optix (gene:FBgn0025360 transcript:FBtr0329885)

HSP 1 Score: 217.238 bits (552), Expect = 3.185e-64
Identity = 105/208 (50.48%), Postives = 151/208 (72.60%), Query Frame = 3

Query:  246 PALDYQTNQDSVISPDS----GAMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPC----QQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            P+  +      +I+P        + F+  QV  VC+ LE+ G+I+RLA F+WSLP       ++   E+VL A+A VA+H  NF+ELY I+E++ F+  ++ KLQA+WL+AHYIE EK++GRSLG V KYR+R+K+PLP TIWDGE+ ++CFKE++R++LR+WYL +PYP+P +K++LA+ T L  TQV NWFKNRRQRDRAA  K++
Sbjct:   12 PSESFSPTHHQIIAPSPILAVPTLAFSAAQVEIVCKTLEDSGDIERLARFLWSLPVALPNMHEILNCEAVLRARAVVAYHVGNFRELYAIIENHKFTKASYGKLQAMWLEAHYIEAEKLRGRSLGPVDKYRVRKKFPLPPTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAKATGLNPTQVGNWFKNRRQRDRAAAAKNR 219

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Zebrafish
Match: six1b (SIX homeobox 1b [Source:NCBI gene;Acc:404627])

HSP 1 Score: 322.013 bits (824), Expect = 3.566e-107
Identity = 157/252 (62.30%), Postives = 182/252 (72.22%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHXXXXXXXXXXXXXXXIKETNHENAIKKIQSYPIGVGNPSLMFPG---FNESVSPFSTTAASIQGGYCSP 1046
            + GFTQEQVACVCEVL+ GGN++RL  F+WSLP C  L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHYIE EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++ +                E N+  A K+ Q  P+  G  SLM      F+   SP   +   +QG    P
Sbjct:    6 SFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKERENS---------------ENNNTGANKQNQLSPLD-GGKSLMSSSEDEFSPPQSPDQNSVLLLQGNMSHP 241

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BLAST of sine oculis-1/2 vs. Ensembl Zebrafish
Match: six2a (SIX homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-010412-1])

HSP 1 Score: 322.013 bits (824), Expect = 4.551e-107
Identity = 141/181 (77.90%), Postives = 160/181 (88.40%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
             GFTQEQVACVCEVL+ GGNI+RL  F+WSLP C+ L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHYIE EK++GR LGAV KYR+RRK+PLPR+IWDGEETSYCFKEKSR+VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++
Sbjct:    7 FGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187

[Close]

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
             GFTQEQVACVCEVL+ GGNI+RL  F+WSLP C+ L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHYIE EK++GR LGAV KYR+RRK+PLPR+IWDGEETSYCFKEKSR+VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++
Sbjct:    7 FGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Zebrafish
Match: six1a (SIX homeobox 1a [Source:NCBI gene;Acc:494168])

HSP 1 Score: 317.005 bits (811), Expect = 2.772e-105
Identity = 139/182 (76.37%), Postives = 159/182 (87.36%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            + GFTQEQVACVCEVL+ GGN++RL  F+WSLP C  L  NESVL AKA VAFHR NF+ELY+ILESY FS HNH K+Q LWL+AHY+E EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR+VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++
Sbjct:    6 SFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESYQFSTHNHPKMQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLREWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Zebrafish
Match: six2b (SIX homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080723-23])

HSP 1 Score: 317.005 bits (811), Expect = 2.871e-105
Identity = 138/181 (76.24%), Postives = 159/181 (87.85%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
             GFTQEQVACVCEVL+ GG+I+RL  F+WSLP C+ L  NESVL AKA VAFHR NF+ELY++LES+ FSPHNH KLQ LWL+AHYIE EK++GR LGAV KYR+RRK+PLPR+IWDGEETSYCFKEKSR VL++WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++
Sbjct:    7 FGFTQEQVACVCEVLQQGGSIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHRGNFRELYKVLESHQFSPHNHPKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRCVLKEWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Xenopus
Match: six1 (SIX homeobox 1 [Source:NCBI gene;Acc:100101702])

HSP 1 Score: 320.087 bits (819), Expect = 3.103e-106
Identity = 140/182 (76.92%), Postives = 159/182 (87.36%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            + GFTQEQVACVCEVL+ GGN++RL  F+WSLP C  L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHY+E EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++
Sbjct:    6 SFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Xenopus
Match: six2 (SIX homeobox 2 [Source:NCBI gene;Acc:100101784])

HSP 1 Score: 318.931 bits (816), Expect = 7.491e-106
Identity = 140/179 (78.21%), Postives = 157/179 (87.71%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENK 839
             GFTQEQVACVCEVL+ GGNI+RL  F+WSLP C+ L  NESVL AKA VAFHR NF+ELY+ILE + FSPHNH KLQ LWL+AHYIE EK++GR LGAV KYR+RRK+PLPR+IWDGEETSYCFKEKSR+VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K
Sbjct:    7 FGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHRGNFRELYKILEGHQFSPHNHPKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAK 185

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Xenopus
Match: SIX4 (SIX homeobox 4 [Source:NCBI gene;Acc:100498150])

HSP 1 Score: 248.44 bits (633), Expect = 6.339e-73
Identity = 110/182 (60.44%), Postives = 137/182 (75.27%), Query Frame = 3

Query:  288 PDSGA---MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDR 824
            P  GA   + F+ E VACVCE L+ GG++DRL+ F+ SLP  + L+ NES+L A+A V FH+  + EL+ +LES+ F P NH  LQ LW +A YIE EK +GR LGAV KYR+RRK+PLPRTIWDGEET YCFKEKSR  L++ Y HN YPSP  K++LA++T L+ TQVSNWFKNRRQRDR
Sbjct:  140 PGGGAPYTLAFSPEHVACVCEALQQGGDLDRLSRFLCSLPHSELLRGNESILKARALVTFHQGRYSELFLLLESHNFHPSNHAALQELWYKARYIEAEKARGRPLGAVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRNALKELYKHNRYPSPAAKRNLAKVTGLSLTQVSNWFKNRRQRDR 321

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Xenopus
Match: six6 (SIX homeobox 6 [Source:NCBI gene;Acc:100101705])

HSP 1 Score: 230.335 bits (586), Expect = 6.629e-72
Identity = 103/173 (59.54%), Postives = 135/173 (78.03%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLP----PCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNR 809
            + F+ +QVA VCE LE  G+I+RL  F+WSLP     C+ L  NESVL A+A VAFH  NF+ELY ILE++ F+  +H KLQALWL+AHY E EK++GR LG V KYR+R+K+PLPRTIWDGE+ ++CFKE++R +LR+WYL +PYP+P +K++LA+ T LT TQV NWFKNR
Sbjct:    7 LNFSPQQVAGVCETLEESGDIERLGRFLWSLPVAPAACEALNKNESVLRARAIVAFHTGNFRELYHILENHKFTKDSHTKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNR 179

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Xenopus
Match: tmem136 (transmembrane protein 136 [Source:Xenbase;Acc:XB-GENE-966251])

HSP 1 Score: 230.335 bits (586), Expect = 2.604e-71
Identity = 99/174 (56.90%), Postives = 137/174 (78.74%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLP----PCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNR 809
            ++ F+ EQVA VCE LE  G+I+RL  F+WSLP     C+ +  +ES+L A+A VAFH  NF++LY ILE++ F+  +H KLQA+WL+AHY E EK++GR LG V KYR+R+K+PLPRTIWDGE+ ++CFKE++R++LR+WYL +PYP+P +K++LA+ T LT TQV NWFKNR
Sbjct:   46 SLNFSPEQVASVCETLEETGDIERLGRFLWSLPVAPGACEAINKHESILRARAVVAFHTGNFRDLYHILENHKFTKESHGKLQAMWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNR 219

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Mouse
Match: Six1 (sine oculis-related homeobox 1 [Source:MGI Symbol;Acc:MGI:102780])

HSP 1 Score: 320.472 bits (820), Expect = 1.557e-106
Identity = 140/182 (76.92%), Postives = 159/182 (87.36%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            + GFTQEQVACVCEVL+ GGN++RL  F+WSLP C  L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHY+E EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++
Sbjct:    6 SFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Mouse
Match: Six2 (sine oculis-related homeobox 2 [Source:MGI Symbol;Acc:MGI:102778])

HSP 1 Score: 320.087 bits (819), Expect = 3.413e-106
Identity = 141/179 (78.77%), Postives = 158/179 (88.27%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENK 839
             GFTQEQVACVCEVL+ GGNI+RL  F+WSLP C+ L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHYIE EK++GR LGAV KYR+RRK+PLPR+IWDGEETSYCFKEKSR+VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K
Sbjct:    7 FGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHAKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAK 185

[Close]

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENK 839
             GFTQEQVACVCEVL+ GGNI+RL  F+WSLP C+ L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHYIE EK++GR LGAV KYR+RRK+PLPR+IWDGEETSYCFKEKSR+VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K
Sbjct:    7 FGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHAKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAK 185

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Mouse
Match: Six4 (sine oculis-related homeobox 4 [Source:MGI Symbol;Acc:MGI:106034])

HSP 1 Score: 244.202 bits (622), Expect = 5.925e-74
Identity = 109/174 (62.64%), Postives = 133/174 (76.44%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDR 824
            + F+ + VACVCE L+ GGN+DRLA F+WSLP    L+ NES+L A+A VAFH+  + ELY ILES++F   NH  LQ LW +A Y E E+ +GR LGAV KYR+RRK+PLPRTIWDGEET YCFKEKSR  L++ Y  N YPSP EK+ LA++T L+ TQVSNWFKNRRQRDR
Sbjct:   91 LAFSPDHVACVCEALQQGGNLDRLARFLWSLPQSDLLRGNESLLKARALVAFHQGIYPELYSILESHSFESANHPLLQQLWYKARYTEAERARGRPLGAVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRNALKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDR 264

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Mouse
Match: Six4 (sine oculis-related homeobox 4 [Source:MGI Symbol;Acc:MGI:106034])

HSP 1 Score: 246.899 bits (629), Expect = 9.243e-73
Identity = 109/174 (62.64%), Postives = 133/174 (76.44%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDR 824
            + F+ + VACVCE L+ GGN+DRLA F+WSLP    L+ NES+L A+A VAFH+  + ELY ILES++F   NH  LQ LW +A Y E E+ +GR LGAV KYR+RRK+PLPRTIWDGEET YCFKEKSR  L++ Y  N YPSP EK+ LA++T L+ TQVSNWFKNRRQRDR
Sbjct:   99 LAFSPDHVACVCEALQQGGNLDRLARFLWSLPQSDLLRGNESLLKARALVAFHQGIYPELYSILESHSFESANHPLLQQLWYKARYTEAERARGRPLGAVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRNALKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDR 272

[Close]

BLAST of sine oculis-1/2 vs. UniProt/SwissProt
Match: sp|Q6NZ04|SIX1B_DANRE (Homeobox protein six1b OS=Danio rerio OX=7955 GN=six1b PE=1 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.692e-106
Identity = 157/252 (62.30%), Postives = 182/252 (72.22%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHXXXXXXXXXXXXXXXIKETNHENAIKKIQSYPIGVGNPSLMFPG---FNESVSPFSTTAASIQGGYCSP 1046
            + GFTQEQVACVCEVL+ GGN++RL  F+WSLP C  L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHYIE EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++ +                E N+  A K+ Q  P+  G  SLM      F+   SP   +   +QG    P
Sbjct:    6 SFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKERENS---------------ENNNTGANKQNQLSPLD-GGKSLMSSSEDEFSPPQSPDQNSVLLLQGNMSHP 241

[Close]

BLAST of sine oculis-1/2 vs. UniProt/SwissProt
Match: sp|A2D5H2|SIX1_LAGLA (Homeobox protein SIX1 OS=Lagothrix lagotricha OX=9519 GN=SIX1 PE=3 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 1.077e-105
Identity = 140/182 (76.92%), Postives = 159/182 (87.36%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            + GFTQEQVACVCEVL+ GGN++RL  F+WSLP C  L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHY+E EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++
Sbjct:    6 SFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187

[Close]

BLAST of sine oculis-1/2 vs. UniProt/SwissProt
Match: sp|Q62231|SIX1_MOUSE (Homeobox protein SIX1 OS=Mus musculus OX=10090 GN=Six1 PE=1 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 1.089e-105
Identity = 140/182 (76.92%), Postives = 159/182 (87.36%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            + GFTQEQVACVCEVL+ GGN++RL  F+WSLP C  L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHY+E EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++
Sbjct:    6 SFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187

[Close]

BLAST of sine oculis-1/2 vs. UniProt/SwissProt
Match: sp|Q9I8H0|SIX1_XENLA (Homeobox protein six1 OS=Xenopus laevis OX=8355 GN=six1 PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 1.227e-105
Identity = 140/182 (76.92%), Postives = 159/182 (87.36%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            + GFTQEQVACVCEVL+ GGN++RL  F+WSLP C  L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHY+E EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++
Sbjct:    6 SFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187

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BLAST of sine oculis-1/2 vs. UniProt/SwissProt
Match: sp|Q15475|SIX1_HUMAN (Homeobox protein SIX1 OS=Homo sapiens OX=9606 GN=SIX1 PE=1 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 1.254e-105
Identity = 140/182 (76.92%), Postives = 159/182 (87.36%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            + GFTQEQVACVCEVL+ GGN++RL  F+WSLP C  L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHY+E EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++
Sbjct:    6 SFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187

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BLAST of sine oculis-1/2 vs. TrEMBL
Match: H9B8J4 (Sine oculis-1/2 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 944.88 bits (2441), Expect = 0.000e+0
Identity = 481/482 (99.79%), Postives = 482/482 (100.00%), Query Frame = 3

Query:   54 MRSISTSQATDIQQNICDQFSNSGDYKSLDGPVVSSPSESDSNVNYASFHQFGMVSYEQSCLAAPALDYQTNQDSVISPDSGAMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHXXXXXXXXXXXXXXXIKETNHENAIKKIQSYPIGVGNPSLMFPGFNESVSPFSTTAASIQGGYCSPYIYNSNPAANYISYFSSGLHNLPISGQYPNILSRESMANTDTSYMNPAKSELSSKALKLNQVSECEDIEPADQTTNLLNQQSYETSNSDYHSMSSTNSSYLNYEKIFNTNITENPLSRXXXXXXXXXXXYNPYFSQNTYGNFHNPDYDTPI 1499
            MRSISTSQATDIQQNICDQFSNSGDYKSLDGPVVSSPSESDSNVNYASFHQFGMVSYEQSCLAAPALDYQTNQDSVISPDSGAMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHDDLSASEADSESLKDIKETNHENAIKKIQSYPIGVGNPSLMFPGFNESVSPFSTTAASIQGGYCSPYIYNSNPAANYISYFSSGLHNLPISGQYPNILSRESMANTDTSYMNPAKSE+SSKALKLNQVSECEDIEPADQTTNLLNQQSYETSNSDYHSMSSTNSSYLNYEKIFNTNITENPLSRTNTNSSTNSSSYNPYFSQNTYGNFHNPDYDTPI
Sbjct:    1 MRSISTSQATDIQQNICDQFSNSGDYKSLDGPVVSSPSESDSNVNYASFHQFGMVSYEQSCLAAPALDYQTNQDSVISPDSGAMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHDDLSASEADSESLKDIKETNHENAIKKIQSYPIGVGNPSLMFPGFNESVSPFSTTAASIQGGYCSPYIYNSNPAANYISYFSSGLHNLPISGQYPNILSRESMANTDTSYMNPAKSEISSKALKLNQVSECEDIEPADQTTNLLNQQSYETSNSDYHSMSSTNSSYLNYEKIFNTNITENPLSRTNTNSSTNSSSYNPYFSQNTYGNFHNPDYDTPI 482

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BLAST of sine oculis-1/2 vs. TrEMBL
Match: Q86FY7 (Six1-2 protein OS=Dugesia japonica OX=6161 GN=six1-2 PE=4 SV=1)

HSP 1 Score: 760.37 bits (1962), Expect = 0.000e+0
Identity = 388/431 (90.02%), Postives = 408/431 (94.66%), Query Frame = 3

Query:  213 MVSYEQSCLAAPALDYQTNQDSVISPDSGAMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHXXXXXXXXXXXXXXXIKETNHEN--AIKKIQSYPIGVGNPSLMFPGFNESVSPFSTTAASIQGGYCSPYIYNSNPAANYISYFSSGLHNLPISGQYPNILSRESMANTDTSYMNPAKSELSSKALKLNQVSECEDIEPADQTTNLLNQQSYETSNSDYHSMSSTNSSYLNYEKIFNTNITENPLSRXXXXXXXXXXXYNPYFSQNTYGNFHNPDYDTPI 1499
            MV YEQ+CL APALDY + QDSVIS DSG MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHDDLSAS+ADSESLKDIKE NH++   +KK+Q+YPIGVGNPSLMFPGFNE+VSPFST+A +IQGGYC+PYIYNSNP ANYISYFSSGLHNLPISGQYPNILSRESM NTDTSYMN +KSE  +K +KLNQVSEC+DI+  DQT NLLN  +YETSNSDYHSMSSTNS+YLNYEKIFNT ITENPLSRTNTNSSTNSSSYNPYFSQN+YGNFHNPDYDTPI
Sbjct:    1 MVPYEQTCLTAPALDYTSTQDSVISSDSGTMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHDDLSASDADSESLKDIKEGNHDSNGTMKKLQNYPIGVGNPSLMFPGFNETVSPFSTSATNIQGGYCTPYIYNSNPTANYISYFSSGLHNLPISGQYPNILSRESMVNTDTSYMNSSKSEHPTKVIKLNQVSECDDIDTTDQTPNLLNPPTYETSNSDYHSMSSTNSTYLNYEKIFNTTITENPLSRTNTNSSTNSSSYNPYFSQNSYGNFHNPDYDTPI 431

[Close]

BLAST of sine oculis-1/2 vs. TrEMBL
Match: Q9NFY0 (Homeodomain transcription factor OS=Girardia tigrina OX=6162 GN=so PE=2 SV=1)

HSP 1 Score: 745.732 bits (1924), Expect = 0.000e+0
Identity = 381/431 (88.40%), Postives = 403/431 (93.50%), Query Frame = 3

Query:  213 MVSYEQSCLAAPALDYQTNQDSVISPDSGAMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHXXXXXXXXXXXXXXXIKETNHENA--IKKIQSYPIGVGNPSLMFPGFNESVSPFSTTAASIQGGYCSPYIYNSNPAANYISYFSSGLHNLPISGQYPNILSRESMANTDTSYMNPAKSELSSKALKLNQVSECEDIEPADQTTNLLNQQSYETSNSDYHSMSSTNSSYLNYEKIFNTNITENPLSRXXXXXXXXXXXYNPYFSQNTYGNFHNPDYDTPI 1499
            MV YEQ+CL AP LDY T QDSVIS DSG MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTS TTTQVSNWFKNRRQRDRAAENKDKHDDLSAS ADSESLKDIKE NHEN   +KK+QSYPIGVGNPSLMF GFNE++SPF+T A  IQGGYC+PYIYNSNPAANYISYFSSGLHNLPI+GQYPNILSRES+ NTDTSYMN  K++ +SK LKLNQVS+C+D++  DQT+NLLN  +Y+TSNSDYHSMSSTNS+YLNY+K+F TNI ENPLSRTNTNSSTNSSSYNPYFSQNTYGNFHNPDYDTPI
Sbjct:    1 MVPYEQTCLTAPTLDYITPQDSVISSDSGTMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSFTTTQVSNWFKNRRQRDRAAENKDKHDDLSASGADSESLKDIKEGNHENGGPLKKLQSYPIGVGNPSLMFSGFNETMSPFNTNATGIQGGYCTPYIYNSNPAANYISYFSSGLHNLPITGQYPNILSRESLVNTDTSYMNSGKNDHTSKLLKLNQVSDCDDLDSPDQTSNLLNPPAYDTSNSDYHSMSSTNSTYLNYDKLFTTNIPENPLSRTNTNSSTNSSSYNPYFSQNTYGNFHNPDYDTPI 431

[Close]

BLAST of sine oculis-1/2 vs. TrEMBL
Match: H6V053 (SO (Fragment) OS=Schmidtea polychroa OX=50054 GN=so PE=2 SV=1)

HSP 1 Score: 640.573 bits (1651), Expect = 0.000e+0
Identity = 322/333 (96.70%), Postives = 327/333 (98.20%), Query Frame = 3

Query:  276 SVISPDSGAMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHXXXXXXXXXXXXXXXIKETNHEN--AIKKIQSYPIGVGNPSLMFPGFNESVSPFSTTAASIQGGYCSPYIYNSNPAANYISYFSSGLHNLPISGQYPNILSRESMANTDTSYMNPAKSELSSKALKLNQVSECEDIEPADQT 1268
            SVISPDSG MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHDDLSASEADSESLKDIKETNH++  AIKKIQSYPIGVGNPSLMFPGF+ESVSPFSTTAASIQGGYCSPYIYNSNPAANYISYFSSGLHNLPISGQYPNILSRE MANTDTSYMN +KSE S+KALKLNQVSECEDIEPADQT
Sbjct:    1 SVISPDSGTMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHDDLSASEADSESLKDIKETNHDSGVAIKKIQSYPIGVGNPSLMFPGFSESVSPFSTTAASIQGGYCSPYIYNSNPAANYISYFSSGLHNLPISGQYPNILSREPMANTDTSYMNSSKSEHSTKALKLNQVSECEDIEPADQT 333

[Close]

BLAST of sine oculis-1/2 vs. TrEMBL
Match: Q7Z1Y5 (Sine oculis protein (Fragment) OS=Dugesia japonica OX=6161 GN=sine oculis PE=2 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 7.679e-139
Identity = 226/261 (86.59%), Postives = 244/261 (93.49%), Query Frame = 3

Query:  723 PYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHXXXXXXXXXXXXXXXIKETNHEN--AIKKIQSYPIGVGNPSLMFPGFNESVSPFSTTAASIQGGYCSPYIYNSNPAANYISYFSSGLHNLPISGQYPNILSRESMANTDTSYMNPAKSELSSKALKLNQVSECEDIEPADQTTNLLNQQSYETSNSDYHSMSSTNSSYLNYEKIFNTNITENPLSRXXXXXXXXXXXYNPYFSQNTYGNFHNPDYDTPI 1499
            PYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHDDLSAS+ADSESLKDIKE NH++   +KK+Q+YPIGVGNPSLMFPGFNE+VSPFST+A +IQGGYC+PYIYNSNP ANYISYFSSGLHNLPISGQYPNILSRESM NTDTSYMN +KSE  +K +KLNQVSEC+DI+  DQT NLLN  +YETSNSDYHSMSSTNS+YLNYEKIFNT ITENPLSRTNTNSSTNSSSYNPYFSQN+YGNFHNPDYDTPI
Sbjct:    1 PYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHDDLSASDADSESLKDIKEGNHDSNGTMKKLQNYPIGVGNPSLMFPGFNETVSPFSTSATNIQGGYCTPYIYNSNPTANYISYFSSGLHNLPISGQYPNILSRESMVNTDTSYMNSSKSEHPTKVIKLNQVSECDDIDTTDQTPNLLNPPTYETSNSDYHSMSSTNSTYLNYEKIFNTTITENPLSRTNTNSSTNSSSYNPYFSQNSYGNFHNPDYDTPI 261

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Cavefish
Match: six1b (homeobox protein six1b [Source:NCBI gene;Acc:103034839])

HSP 1 Score: 323.168 bits (827), Expect = 9.377e-108
Identity = 157/252 (62.30%), Postives = 183/252 (72.62%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHXXXXXXXXXXXXXXXIKETNHENAIKKIQSYPIGVGNPSLMFPG---FNESVSPFSTTAASIQGGYCSP 1046
            + GFTQEQVACVCEVL+ GGN++RL  F+WSLP C  L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHYIE EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++ +                E N+  A K+ Q  P+  G  SLM      F+   SP  ++   +QG    P
Sbjct:    6 SFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKERENS---------------ENNNSGANKQSQLSPLD-GGKSLMSSSDEEFSPPQSPDQSSVLLLQGNMSHP 241

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Cavefish
Match: six2a (SIX homeobox 2 [Source:NCBI gene;Acc:103025828])

HSP 1 Score: 321.242 bits (822), Expect = 7.633e-107
Identity = 141/181 (77.90%), Postives = 160/181 (88.40%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
             GFTQEQVACVCEVL+ GGNI+RL  F+WSLP C+ L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHYIE EK++GR LGAV KYR+RRK+PLPR+IWDGEETSYCFKEKSR+VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++
Sbjct:    7 FGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Cavefish
Match: ENSAMXT00000021946.2 (homeobox protein six1b [Source:NCBI gene;Acc:103045548])

HSP 1 Score: 310.842 bits (795), Expect = 5.119e-103
Identity = 136/184 (73.91%), Postives = 158/184 (85.87%), Query Frame = 3

Query:  294 SGAMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            S + GFTQEQVACVCEVL+ GGN++RL  F+WSLP C+ L  NESVL AKA VAFHR NF+ELY+ILE + FS HNH KLQ LWL+AHY E E+++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR+VLR WY HNPYPSPREK++LA+ T L+TTQVSNWFKNRRQRDRAAE K++
Sbjct:    4 SSSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACEHLHKNESVLKAKAMVAFHRGNFRELYKILEGHQFSTHNHGKLQQLWLRAHYAEAERLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYTHNPYPSPREKRELAQATGLSTTQVSNWFKNRRQRDRAAEAKER 187

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Cavefish
Match: six2b (SIX homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080723-23])

HSP 1 Score: 305.834 bits (782), Expect = 8.746e-101
Identity = 132/173 (76.30%), Postives = 152/173 (87.86%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQR 818
            + GFTQEQVACVCEVL+ GG+I+RL  F+WSLP C+ L  NESVL AKA VAFHR NF+ELY++LES+ FSPHNH KLQ LWL+AHY+E EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR VL++WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQR
Sbjct:    6 SFGFTQEQVACVCEVLQQGGSIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHRGNFRELYKVLESHQFSPHNHPKLQQLWLKAHYMEAEKVRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRCVLKEWYSHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Cavefish
Match: six9 (homeobox protein SIX2-like [Source:NCBI gene;Acc:111191018])

HSP 1 Score: 256.144 bits (653), Expect = 5.116e-82
Identity = 121/190 (63.68%), Postives = 141/190 (74.21%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQ----------LQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENK 839
            AM F+++QV CVCEVL   G +DRLA F+ SLP              LQ  ESVL A+AAVAFH+  F ELY ++E + FSP +H  LQ LWL+AHY+E E  +GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR VLR+WY   PYPSPREK+DLA  T LT TQVSNWFKNRRQRDRAA+ +
Sbjct:    2 AMVFSEDQVGCVCEVLLQSGCMDRLASFLRSLPSSSSSSSSSSSYPGLQGMESVLKARAAVAFHQGRFTELYALIEGHAFSPLSHALLQQLWLRAHYLEAELQRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRCVLREWYCRKPYPSPREKRDLAAATGLTATQVSNWFKNRRQRDRAAQGR 191

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Sea Lamprey
Match: six1a (SIX homeobox 1a [Source:NCBI gene;Acc:494168])

HSP 1 Score: 241.121 bits (614), Expect = 2.287e-78
Identity = 107/150 (71.33%), Postives = 127/150 (84.67%), Query Frame = 3

Query:  363 IDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRR 812
            ++RL  F+WSLP C+Q+Q +ES+L AKA VAFH+ NF+ELY +LES  FS  NH KLQ LWL+AHY E E+++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKE+SR VLR WY HNPYPSPREK++LA+ T LTTTQVSNWFKNRR
Sbjct:    1 MERLGRFLWSLPACEQIQRSESILMAKAVVAFHQGNFRELYAVLESQPFSARNHPKLQQLWLKAHYTEAERLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKERSRGVLRDWYAHNPYPSPREKRELAQATGLTTTQVSNWFKNRR 150

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002854.1 (pep scaffold:Pmarinus_7.0:GL480305:17375:18769:1 gene:ENSPMAG00000002608.1 transcript:ENSPMAT00000002854.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 220.705 bits (561), Expect = 1.708e-69
Identity = 97/173 (56.07%), Postives = 134/173 (77.46%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPC----QQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNR 809
            + F+ +QVA VCE LE  G+I+RL  F+WSLP      + L   E+VL A+A VAFH  N+++LY ILE + FS  +H KLQA+WL+AHY+E E+++GR LG V KYR+R+K+PLPRTIWDGE+ ++CFKE++R++LR+WYL +PYP+P +K++LA+ T LT TQV NWFKNR
Sbjct:   39 LSFSPQQVASVCETLEESGDIERLGRFLWSLPVAPGAWEALNRQEAVLRARAVVAFHASNYRDLYAILEGHKFSKASHAKLQAMWLEAHYLEAERLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPAKKRELAQATGLTPTQVGNWFKNR 211

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011157.1 (pep scaffold:Pmarinus_7.0:GL488016:7246:7434:-1 gene:ENSPMAG00000010130.1 transcript:ENSPMAT00000011157.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 100.523 bits (249), Expect = 1.935e-26
Identity = 40/63 (63.49%), Postives = 55/63 (87.30%), Query Frame = 3

Query:  624 KYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRR 812
            K+PLP+TIWDGE+ ++CFKE++R +LR+WYL +PYP+P +K++LA+ T LT TQV NWFKNRR
Sbjct:    1 KFPLPKTIWDGEQKTHCFKERTRNLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRR 63

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Sea Lamprey
Match: Six4 (pep scaffold:Pmarinus_7.0:GL478660:19078:19268:1 gene:ENSPMAG00000010180.1 transcript:ENSPMAT00000011207.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Six4)

HSP 1 Score: 96.2857 bits (238), Expect = 6.689e-25
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 3

Query:  624 KYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRR 812
            K+PLPRTIWDGEET YCFKEKSR  L+  Y    YP+P EK+ LA++T L+  QVSNWFKNRR
Sbjct:    1 KFPLPRTIWDGEETVYCFKEKSRNFLKDCYRRTRYPAPDEKRRLAKLTGLSVVQVSNWFKNRR 63

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001924.1 (pep scaffold:Pmarinus_7.0:GL488033:11:347:-1 gene:ENSPMAG00000001748.1 transcript:ENSPMAT00000001924.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 81.2629 bits (199), Expect = 3.362e-19
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 3

Query:  321 QVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWL 548
            QVACVCE L+ GG++ RLA F+W+LP       +E+VL A+A VAFH  +++ELY +LE + F   +H  L AL L
Sbjct:    1 QVACVCEALQQGGDVARLARFLWALPGPAAASRDEAVLRARAHVAFHSGSYRELYDVLEGHAFEARHHAALLALSL 76

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Yeast
Match: TOS8 (Homeodomain-containing protein and putative transcription factor; found associated with chromatin; target of SBF transcription factor; induced during meiosis and under cell-damaging conditions; TOS8 has a paralog, CUP9, that arose from the whole genome duplication [Source:SGD;Acc:S000003064])

HSP 1 Score: 47.3654 bits (111), Expect = 2.214e-6
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 3

Query:  693 AVLRQW---YLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRD 821
            ++L +W   +++NPYP+ +EK++L   T LT  Q+SNWF N R+R 
Sbjct:  207 SILNKWLHEHVNNPYPTVQEKRELLAKTGLTKLQISNWFINARRRK 252

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Yeast
Match: CUP9 (Homeodomain-containing transcriptional repressor; regulates expression of PTR2, which encodes a major peptide transporter; imported peptides activate ubiquitin-dependent proteolysis, resulting in degradation of Cup9p and de-repression of PTR2 transcription; CUP9 has a paralog, TOS8, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000006098])

HSP 1 Score: 45.8246 bits (107), Expect = 7.638e-6
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 3

Query:  696 VLRQW---YLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQR 818
            +L  W   +L+NPYP+ +EK++L   T LT  Q+SNWF N R+R
Sbjct:  176 ILNTWLLNHLNNPYPTQQEKRELLIKTGLTKIQLSNWFINVRRR 219

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Nematostella
Match: EDO34334 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SPN4])

HSP 1 Score: 295.049 bits (754), Expect = 1.375e-98
Identity = 133/180 (73.89%), Postives = 156/180 (86.67%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENK 839
            +  FT EQVACVCEVL+  G+I+RL  F+WSLP C+ +Q NESVL AKA V+FH+QNF+ELYRILE+  FSP+ H KLQ+LWL+AHY+E EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR +LR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K
Sbjct:    4 SFSFTPEQVACVCEVLQQSGDIERLGRFLWSLPECETIQKNESVLKAKAIVSFHQQNFQELYRILENNNFSPNAHPKLQSLWLKAHYMEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRNILREWYSHNPYPSPREKRELAEGTGLTTTQVSNWFKNRRQRDRAAEAK 183

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Nematostella
Match: EDO42933 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S005])

HSP 1 Score: 251.906 bits (642), Expect = 7.418e-82
Identity = 115/182 (63.19%), Postives = 143/182 (78.57%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPP-CQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            M F+ EQ+  VCE L+N GNI+RLA F+WSLP   +++   E++L AKA VAFH+ NFKELY ILES  F    H KLQ LW  AHYIE E+++GR LGAV KYR+RRK+PLPRTIWDGEET+YCFKEKSR++L + Y+ +PYP+PREK +LA+MT LT TQVSNWFKN+RQR RAAE + +
Sbjct:    1 MPFSMEQIISVCECLQNSGNIERLARFLWSLPKDSEEIHACETILVAKAVVAFHQNNFKELYSILESRKFQRSEHEKLQCLWRTAHYIEAERVRGRPLGAVGKYRVRRKFPLPRTIWDGEETTYCFKEKSRSILNKAYVDSPYPTPREKHELAKMTDLTVTQVSNWFKNKRQRVRAAEIRKR 182

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Nematostella
Match: EDO31034 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SZ27])

HSP 1 Score: 234.572 bits (597), Expect = 3.020e-75
Identity = 108/174 (62.07%), Postives = 134/174 (77.01%), Query Frame = 3

Query:  318 EQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENK 839
            +QVACVC+ L   G+I+RL+ F+WSLPP   L  +ESVL A+A V+FHR  ++E+Y ILE+  F P +H  LQ LW +AHY E EK++GRSLGAV KYRIRRK+PLPRTIWDGEET YCFKEK+RA L+  Y  N YP+P+EK+ +A+ T+LT  QVSNWFKNRRQRDR   NK
Sbjct:    1 DQVACVCDALRQAGDIERLSRFLWSLPPDDLLNGSESVLKARAIVSFHRGRYREVYNILETNEFDPSSHELLQCLWYKAHYSEAEKLRGRSLGAVDKYRIRRKFPLPRTIWDGEETVYCFKEKARAALKDCYEQNKYPTPQEKRLIAKQTNLTLKQVSNWFKNRRQRDRIPSNK 174

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Nematostella
Match: EDO33059 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7ST96])

HSP 1 Score: 222.246 bits (565), Expect = 2.944e-70
Identity = 98/174 (56.32%), Postives = 136/174 (78.16%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLP----PCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNR 809
            A+ F+  Q+A VCE LE  G+++RLA F+WSLP      + L  +ESVL A+A VAFH  NF++LY ILE++ F+  +H KLQA+WL+AHY E E+++GR LG V KYR+R+K+PLPRTIWDGE+ ++CFKE++R++LR+WYL +PYP+P +K++LA+ T LT TQV NWFKNR
Sbjct:    7 ALSFSAHQIAQVCETLEESGDVERLARFLWSLPVAPGTLEALGKHESVLRARAIVAFHMGNFRDLYHILETHRFTRESHAKLQAMWLEAHYQEAERLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNR 180

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Nematostella
Match: EDO33407 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SS98])

HSP 1 Score: 176.407 bits (446), Expect = 5.465e-53
Identity = 86/165 (52.12%), Postives = 115/165 (69.70%), Query Frame = 3

Query:  318 EQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRR 812
            +QVAC+C+ L   G+I RL+ F+ S+P       +ES+L A+A VAFHR  ++E+Y ILE+  F   +H  LQ LW +AHY E EK++GRSL AV K+RIR+K PLP TI DGE+T Y FKEK R VL++ Y H  YP+ +EK+ +A  T+LT  QV NWF+NRR
Sbjct:    1 DQVACICDALFQEGDIKRLSQFLLSIPQEDLQNKSESLLKARAMVAFHRGCYQEVYNILENNKFDTSSHEFLQCLWYKAHYSEGEKLRGRSLSAVDKFRIRKKSPLPNTISDGEKTIYFFKEKVRTVLKECYEHKKYPTLKEKRVIATQTNLTLRQVRNWFRNRR 165

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Medaka
Match: six1b (SIX homeobox 1 [Source:NCBI gene;Acc:101175523])

HSP 1 Score: 320.857 bits (821), Expect = 7.963e-107
Identity = 140/182 (76.92%), Postives = 159/182 (87.36%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            + GFTQEQVACVCEVL+ GGN++RL  F+WSLP C  L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHY+E EK++GR LGAV KYR+RRK+PLPRTIWDGEETSYCFKEKSR VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K++
Sbjct:    6 SFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Medaka
Match: six2a (SIX homeobox 2 [Source:NCBI gene;Acc:101161260])

HSP 1 Score: 319.701 bits (818), Expect = 2.643e-106
Identity = 141/179 (78.77%), Postives = 158/179 (88.27%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENK 839
             GFTQEQVACVCEVL+ GGNI+RL  F+WSLP C+ L  NESVL AKA VAFHR NF+ELY+ILES+ FSPHNH KLQ LWL+AHYIE EK++GR LGAV KYR+RRK+PLPR+IWDGEETSYCFKEKSR+VLR+WY HNPYPSPREK++LAE T LTTTQVSNWFKNRRQRDRAAE K
Sbjct:    7 FGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAK 185

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Medaka
Match: six4a (SIX homeobox 4 [Source:NCBI gene;Acc:101159478])

HSP 1 Score: 258.84 bits (660), Expect = 4.345e-78
Identity = 114/175 (65.14%), Postives = 138/175 (78.86%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDR 824
            ++ F+ EQVACVCE L+ GGN+DRLA F+WSLP    L+ NES+L A+A VAFH+  ++ELY ILE+++FSP NH  LQ LW +A Y E EK +GR LGAV KYRIRRKYPLPRTIWDGEET YCFKE+SR  L+  Y  N YPSP EK++LA++T L+ TQVSNWFKNRRQRDR
Sbjct:   62 SLAFSPEQVACVCEALQQGGNVDRLARFLWSLPQSDLLRGNESILKAQALVAFHQARYQELYSILENHSFSPSNHTFLQDLWYKARYTEAEKARGRPLGAVDKYRIRRKYPLPRTIWDGEETVYCFKERSRNALKDLYNQNRYPSPAEKRNLAKITGLSLTQVSNWFKNRRQRDR 236

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Medaka
Match: six9 (homeobox protein six1a-like [Source:NCBI gene;Acc:101162149])

HSP 1 Score: 235.728 bits (600), Expect = 1.497e-74
Identity = 112/176 (63.64%), Postives = 132/176 (75.00%), Query Frame = 3

Query:  303 MGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQ-LQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRA 827
            M FT EQV CVCEVL   G IDRLA F+ ++PP    L+  E VL AKAAVAFH   F +LY +LES+ FS  +H+ LQ LWL+A Y E E+ +GR LGAV KYR+RRK+PLP TIWDGEET YCFKEKSR +L++WY   PYPS REK++LA  T LT TQVSNWFKNRRQR+RA
Sbjct:    5 MIFTPEQVICVCEVLLQAGCIDRLAGFLRTIPPSSSGLEELEGVLKAKAAVAFHHGRFSDLYALLESFPFSSSSHWFLQQLWLRARYTEAERQRGRPLGAVGKYRVRRKFPLPHTIWDGEETIYCFKEKSRRILKEWYRRGPYPSTREKRELAAATGLTATQVSNWFKNRRQRERA 180

[Close]

BLAST of sine oculis-1/2 vs. Ensembl Medaka
Match: six7 (homeobox protein SIX6-like [Source:NCBI gene;Acc:101175353])

HSP 1 Score: 235.728 bits (600), Expect = 5.232e-74
Identity = 107/185 (57.84%), Postives = 140/185 (75.68%), Query Frame = 3

Query:  309 FTQEQVACVCEVLENGGNIDRLALFIWSLPPC------QQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            FT +QVA VCE LE  G+I+RL  F+WSLP        + L  +ESV+ A+A VAFH  NF+ LY+IL+S+ F+  +H KLQ LWL AHY E E+++GR LG V KYRIR+K+PLPRTIWDGE+ ++CFKE++R++LR+WYL +PYP+P  K+ LA+ T LT TQV NWFKNRRQRDRAA  K++
Sbjct:    7 FTPDQVARVCENLEETGDIERLGRFLWSLPAAVPGSAGEALNRHESVMRARALVAFHVGNFEALYQILQSHRFTRESHAKLQDLWLDAHYREAERLRGRPLGPVEKYRIRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPSRKRHLAQATGLTPTQVGNWFKNRRQRDRAASAKNR 191

[Close]

BLAST of sine oculis-1/2 vs. Planmine SMEST
Match: SMESG000001687.1 (SMESG000001687.1)

HSP 1 Score: 944.88 bits (2441), Expect = 0.000e+0
Identity = 481/482 (99.79%), Postives = 482/482 (100.00%), Query Frame = 3

Query:   54 MRSISTSQATDIQQNICDQFSNSGDYKSLDGPVVSSPSESDSNVNYASFHQFGMVSYEQSCLAAPALDYQTNQDSVISPDSGAMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHXXXXXXXXXXXXXXXIKETNHENAIKKIQSYPIGVGNPSLMFPGFNESVSPFSTTAASIQGGYCSPYIYNSNPAANYISYFSSGLHNLPISGQYPNILSRESMANTDTSYMNPAKSELSSKALKLNQVSECEDIEPADQTTNLLNQQSYETSNSDYHSMSSTNSSYLNYEKIFNTNITENPLSRXXXXXXXXXXXYNPYFSQNTYGNFHNPDYDTPI 1499
            MRSISTSQATDIQQNICDQFSNSGDYKSLDGPVVSSPSESDSNVNYASFHQFGMVSYEQSCLAAPALDYQTNQDSVISPDSGAMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHDDLSASEADSESLKDIKETNHENAIKKIQSYPIGVGNPSLMFPGFNESVSPFSTTAASIQGGYCSPYIYNSNPAANYISYFSSGLHNLPISGQYPNILSRESMANTDTSYMNPAKSE+SSKALKLNQVSECEDIEPADQTTNLLNQQSYETSNSDYHSMSSTNSSYLNYEKIFNTNITENPLSRTNTNSSTNSSSYNPYFSQNTYGNFHNPDYDTPI
Sbjct:    1 MRSISTSQATDIQQNICDQFSNSGDYKSLDGPVVSSPSESDSNVNYASFHQFGMVSYEQSCLAAPALDYQTNQDSVISPDSGAMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDKHDDLSASEADSESLKDIKETNHENAIKKIQSYPIGVGNPSLMFPGFNESVSPFSTTAASIQGGYCSPYIYNSNPAANYISYFSSGLHNLPISGQYPNILSRESMANTDTSYMNPAKSEISSKALKLNQVSECEDIEPADQTTNLLNQQSYETSNSDYHSMSSTNSSYLNYEKIFNTNITENPLSRTNTNSSTNSSSYNPYFSQNTYGNFHNPDYDTPI 482

[Close]

BLAST of sine oculis-1/2 vs. Planmine SMEST
Match: SMESG000005975.1 (SMESG000005975.1)

HSP 1 Score: 316.62 bits (810), Expect = 1.979e-102
Identity = 140/181 (77.35%), Postives = 160/181 (88.40%), Query Frame = 3

Query:  300 AMGFTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKD 842
            + GFTQEQVACVCEVL+ GG+IDRLA F+WSLP C+ LQ NESVL AKA VAFHR NFKELYRILES+ FS  NH+KLQ LWL+AHY+E EKI+GR LGAV KYR+R+K+PLPRTIWDG+ETSYCFKEKSR VLR+WY  NPYP+PREK++LAE T LTTTQVSNWFKNRRQRDRA+ENK+
Sbjct:  100 SCGFTQEQVACVCEVLQQGGSIDRLARFLWSLPNCEYLQKNESVLKAKAVVAFHRGNFKELYRILESHNFSVQNHHKLQDLWLKAHYVESEKIRGRPLGAVGKYRVRKKFPLPRTIWDGDETSYCFKEKSRNVLREWYSQNPYPTPREKRELAEATGLTTTQVSNWFKNRRQRDRASENKE 280

[Close]

BLAST of sine oculis-1/2 vs. Planmine SMEST
Match: SMESG000017729.1 (SMESG000017729.1)

HSP 1 Score: 239.58 bits (610), Expect = 7.486e-73
Identity = 104/183 (56.83%), Postives = 140/183 (76.50%), Query Frame = 3

Query:  309 FTQEQVACVCEVLENGGNIDRLALFIWSLPP----CQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            F  +Q+A VCE LE  G+I+RL  F+WS+P      + L  +E++L A+A VAFH  NF+ELY ILE + F   +H KLQALWL+AHY E EK++GR LG V KYR+R+K+P+PRTIWDGE+ ++CFKE++R++LR+WYL +PYP+P +K++LA  T LT TQV NWFKNRRQRDRAA +K +
Sbjct:   40 FAPDQIAKVCETLEESGDIERLGRFLWSMPTNSILWKSLNEHEALLRARAIVAFHTGNFRELYHILEKHHFEKSSHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPMPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPAKKRELASATGLTPTQVGNWFKNRRQRDRAAASKHR 222

[Close]

BLAST of sine oculis-1/2 vs. Planmine SMEST
Match: SMESG000017729.1 (SMESG000017729.1)

HSP 1 Score: 239.58 bits (610), Expect = 7.540e-73
Identity = 104/183 (56.83%), Postives = 140/183 (76.50%), Query Frame = 3

Query:  309 FTQEQVACVCEVLENGGNIDRLALFIWSLPP----CQQLQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAAENKDK 845
            F  +Q+A VCE LE  G+I+RL  F+WS+P      + L  +E++L A+A VAFH  NF+ELY ILE + F   +H KLQALWL+AHY E EK++GR LG V KYR+R+K+P+PRTIWDGE+ ++CFKE++R++LR+WYL +PYP+P +K++LA  T LT TQV NWFKNRRQRDRAA +K +
Sbjct:   47 FAPDQIAKVCETLEESGDIERLGRFLWSMPTNSILWKSLNEHEALLRARAIVAFHTGNFRELYHILEKHHFEKSSHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPMPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPAKKRELASATGLTPTQVGNWFKNRRQRDRAAASKHR 229

[Close]

BLAST of sine oculis-1/2 vs. Planmine SMEST
Match: SMESG000020326.1 (SMESG000020326.1)

HSP 1 Score: 210.69 bits (535), Expect = 1.347e-64
Identity = 95/178 (53.37%), Postives = 129/178 (72.47%), Query Frame = 3

Query:  309 FTQEQVACVCEVLENGGNIDRLALFIWSLPPCQQ----LQTNESVLTAKAAVAFHRQNFKELYRILESYTFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWDGEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFKNRRQRDRAA 830
            F+  Q+  VCE LE  G+I RLA F+W L  CQ     L  +ES+L A++ VAFH  N+ ELY ILE++ FS  +H KLQ+ W  AHY E EK++GR+LG V KYR+R+++PLP TIWDG++ ++CF+E++R +L+  Y  +PYP+P +K++LA  T LT TQV NWFKNRRQRDRAA
Sbjct:   23 FSLSQICQVCENLEESGDIKRLARFLWCLSSCQSIWNSLLHHESILRARSIVAFHSGNYAELYFILENHRFSSQSHMKLQSFWFDAHYSEAEKLRGRALGPVDKYRVRKRHPLPSTIWDGQQRTHCFQERTRCLLKDCYSKDPYPNPNKKRELAIRTGLTATQVGNWFKNRRQRDRAA 200

The following BLAST results are available for this feature:

BLAST of sine oculis-1/2 vs. Ensembl Human
BLAST of sine oculis-1/2 vs. Ensembl Celegans
BLAST of sine oculis-1/2 vs. Ensembl Fly
BLAST of sine oculis-1/2 vs. Ensembl Zebrafish
BLAST of sine oculis-1/2 vs. Ensembl Xenopus
BLAST of sine oculis-1/2 vs. Ensembl Mouse
BLAST of sine oculis-1/2 vs. UniProt/SwissProt
BLAST of sine oculis-1/2 vs. TrEMBL
BLAST of sine oculis-1/2 vs. Ensembl Cavefish
BLAST of sine oculis-1/2 vs. Ensembl Sea Lamprey
BLAST of sine oculis-1/2 vs. Ensembl Yeast
BLAST of sine oculis-1/2 vs. Ensembl Nematostella
BLAST of sine oculis-1/2 vs. Ensembl Medaka
BLAST of sine oculis-1/2 vs. Planmine SMEST

BLAST of sine oculis-1/2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
SIX1	2.611e-106	76.92	SIX homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10887]	[more]
SIX2	6.546e-106	78.77	SIX homeobox 2 [Source:HGNC Symbol;Acc:HGNC:10888]	[more]
SIX4	2.040e-74	62.64	SIX homeobox 4 [Source:HGNC Symbol;Acc:HGNC:10890]	[more]
SIX4	7.439e-73	62.64	SIX homeobox 4 [Source:HGNC Symbol;Acc:HGNC:10890]	[more]
SIX6	1.248e-71	58.38	SIX homeobox 6 [Source:HGNC Symbol;Acc:HGNC:10892]	[more]

BLAST of sine oculis-1/2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ceh-33	9.325e-77	62.64	Homeobox protein ceh-33 [Source:UniProtKB/Swiss-P...	[more]
ceh-34	1.506e-61	53.72	Homeobox protein ceh-34 [Source:UniProtKB/Swiss-P...	[more]
ceh-32	1.696e-60	54.95	Homeobox protein ceh-32 [Source:UniProtKB/Swiss-P...	[more]
unc-39	3.098e-35	32.94	Homeobox protein unc-39 [Source:UniProtKB/Swiss-P...	[more]
unc-62	9.867e-7	49.02	Homeobox protein unc-62 [Source:UniProtKB/Swiss-P...	[more]

BLAST of sine oculis-1/2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
so	3.164e-103	77.35	gene:FBgn0003460 transcript:FBtr0088970	[more]
Six4	2.999e-71	57.38	gene:FBgn0027364 transcript:FBtr0078274	[more]
Six4	2.999e-71	57.38	gene:FBgn0027364 transcript:FBtr0078275	[more]
Optix	2.836e-64	50.48	gene:FBgn0025360 transcript:FBtr0088865	[more]
Optix	3.185e-64	50.48	gene:FBgn0025360 transcript:FBtr0329885	[more]

BLAST of sine oculis-1/2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
six1b	3.566e-107	62.30	SIX homeobox 1b [Source:NCBI gene;Acc:404627]	[more]
six2a	4.551e-107	77.90	SIX homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-010412-1...	[more]
six2a	4.551e-107	77.90	SIX homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-010412-1...	[more]
six1a	2.772e-105	76.37	SIX homeobox 1a [Source:NCBI gene;Acc:494168]	[more]
six2b	2.871e-105	76.24	SIX homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080723-2...	[more]

BLAST of sine oculis-1/2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
six1	3.103e-106	76.92	SIX homeobox 1 [Source:NCBI gene;Acc:100101702]	[more]
six2	7.491e-106	78.21	SIX homeobox 2 [Source:NCBI gene;Acc:100101784]	[more]
SIX4	6.339e-73	60.44	SIX homeobox 4 [Source:NCBI gene;Acc:100498150]	[more]
six6	6.629e-72	59.54	SIX homeobox 6 [Source:NCBI gene;Acc:100101705]	[more]
tmem136	2.604e-71	56.90	transmembrane protein 136 [Source:Xenbase;Acc:XB-G...	[more]

BLAST of sine oculis-1/2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Six1	1.557e-106	76.92	sine oculis-related homeobox 1 [Source:MGI Symbol;...	[more]
Six2	3.413e-106	78.77	sine oculis-related homeobox 2 [Source:MGI Symbol;...	[more]
Six2	3.413e-106	78.77	sine oculis-related homeobox 2 [Source:MGI Symbol;...	[more]
Six4	5.925e-74	62.64	sine oculis-related homeobox 4 [Source:MGI Symbol;...	[more]
Six4	9.243e-73	62.64	sine oculis-related homeobox 4 [Source:MGI Symbol;...	[more]

BLAST of sine oculis-1/2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q6NZ04\|SIX1B_DANRE	2.692e-106	62.30	Homeobox protein six1b OS=Danio rerio OX=7955 GN=s...	[more]
sp\|A2D5H2\|SIX1_LAGLA	1.077e-105	76.92	Homeobox protein SIX1 OS=Lagothrix lagotricha OX=9...	[more]
sp\|Q62231\|SIX1_MOUSE	1.089e-105	76.92	Homeobox protein SIX1 OS=Mus musculus OX=10090 GN=...	[more]
sp\|Q9I8H0\|SIX1_XENLA	1.227e-105	76.92	Homeobox protein six1 OS=Xenopus laevis OX=8355 GN...	[more]
sp\|Q15475\|SIX1_HUMAN	1.254e-105	76.92	Homeobox protein SIX1 OS=Homo sapiens OX=9606 GN=S...	[more]

BLAST of sine oculis-1/2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
H9B8J4	0.000e+0	99.79	Sine oculis-1/2 OS=Schmidtea mediterranea OX=79327...	[more]
Q86FY7	0.000e+0	90.02	Six1-2 protein OS=Dugesia japonica OX=6161 GN=six1...	[more]
Q9NFY0	0.000e+0	88.40	Homeodomain transcription factor OS=Girardia tigri...	[more]
H6V053	0.000e+0	96.70	SO (Fragment) OS=Schmidtea polychroa OX=50054 GN=s...	[more]
Q7Z1Y5	7.679e-139	86.59	Sine oculis protein (Fragment) OS=Dugesia japonica...	[more]

BLAST of sine oculis-1/2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
six1b	9.377e-108	62.30	homeobox protein six1b [Source:NCBI gene;Acc:10303...	[more]
six2a	7.633e-107	77.90	SIX homeobox 2 [Source:NCBI gene;Acc:103025828]	[more]
ENSAMXT00000021946.2	5.119e-103	73.91	homeobox protein six1b [Source:NCBI gene;Acc:10304...	[more]
six2b	8.746e-101	76.30	SIX homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080723-2...	[more]
six9	5.116e-82	63.68	homeobox protein SIX2-like [Source:NCBI gene;Acc:1...	[more]

BLAST of sine oculis-1/2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
six1a	2.287e-78	71.33	SIX homeobox 1a [Source:NCBI gene;Acc:494168]	[more]
ENSPMAT00000002854.1	1.708e-69	56.07	pep scaffold:Pmarinus_7.0:GL480305:17375:18769:1 g...	[more]
ENSPMAT00000011157.1	1.935e-26	63.49	pep scaffold:Pmarinus_7.0:GL488016:7246:7434:-1 ge...	[more]
Six4	6.689e-25	66.67	pep scaffold:Pmarinus_7.0:GL478660:19078:19268:1 g...	[more]
ENSPMAT00000001924.1	3.362e-19	48.68	pep scaffold:Pmarinus_7.0:GL488033:11:347:-1 gene:...	[more]

BLAST of sine oculis-1/2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
TOS8	2.214e-6	43.48	Homeodomain-containing protein and putative transc...	[more]
CUP9	7.638e-6	47.73	Homeodomain-containing transcriptional repressor; ...	[more]

BLAST of sine oculis-1/2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO34334	1.375e-98	73.89	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42933	7.418e-82	63.19	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO31034	3.020e-75	62.07	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO33059	2.944e-70	56.32	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO33407	5.465e-53	52.12	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of sine oculis-1/2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
six1b	7.963e-107	76.92	SIX homeobox 1 [Source:NCBI gene;Acc:101175523]	[more]
six2a	2.643e-106	78.77	SIX homeobox 2 [Source:NCBI gene;Acc:101161260]	[more]
six4a	4.345e-78	65.14	SIX homeobox 4 [Source:NCBI gene;Acc:101159478]	[more]
six9	1.497e-74	63.64	homeobox protein six1a-like [Source:NCBI gene;Acc:...	[more]
six7	5.232e-74	57.84	homeobox protein SIX6-like [Source:NCBI gene;Acc:1...	[more]

BLAST of sine oculis-1/2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000001687.1	0.000e+0	99.79	SMESG000001687.1	[more]
SMESG000005975.1	1.979e-102	77.35	SMESG000005975.1	[more]
SMESG000017729.1	7.486e-73	56.83	SMESG000017729.1	[more]
SMESG000017729.1	7.540e-73	56.83	SMESG000017729.1	[more]
SMESG000020326.1	1.347e-64	53.37	SMESG000020326.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Cross References

External references for this transcript


Database	Accession
SmedGD GBrowse	SMED30023736
GenBank	AFC87779.1

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30023736 ID=SMED30023736|Name=sine oculis-1/2|organism=Schmidtea mediterranea sexual|type=transcript|length=1537bp
CAACAACAGAATATTAGGTTGCTTTACCGACATCTCAAATTACTTGTTTG
ACTATGAGATCGATATCCACGAGCCAAGCAACAGACATTCAACAAAATAT
ATGCGATCAATTTTCTAATTCAGGTGATTACAAATCACTCGATGGCCCAG
TCGTTTCGTCTCCATCCGAATCGGATTCGAATGTTAATTACGCATCATTC
CATCAATTCGGCATGGTATCCTATGAACAGTCATGCTTGGCAGCTCCGGC
TCTAGATTATCAGACTAATCAAGACTCGGTTATTTCTCCCGATTCTGGTG
CAATGGGTTTCACTCAAGAACAAGTCGCATGCGTTTGCGAAGTCCTTGAA
AACGGTGGCAACATCGACAGATTAGCATTGTTCATTTGGTCTCTGCCACC
TTGCCAGCAGCTGCAAACGAATGAAAGCGTCCTAACAGCAAAAGCCGCAG
TTGCTTTTCATCGGCAAAATTTCAAAGAACTCTATAGAATATTAGAATCG
TACACTTTTTCACCGCACAACCATTACAAACTACAGGCACTCTGGTTGCA
AGCACATTACATTGAAGAAGAAAAAATCAAAGGTCGCTCACTGGGAGCTG
TGGCAAAGTACAGAATTCGACGAAAATATCCATTGCCGAGAACGATTTGG
GACGGTGAAGAAACCAGTTATTGTTTCAAAGAAAAATCAAGAGCCGTTCT
TCGACAATGGTATTTGCATAATCCTTACCCGTCACCGAGAGAAAAGAAAG
ATCTCGCTGAAATGACGAGTTTGACAACAACTCAGGTGTCTAATTGGTTT
AAAAACCGACGCCAACGAGATCGAGCAGCAGAAAACAAAGACAAACATGA
TGACCTATCTGCTTCCGAAGCTGACAGCGAGTCATTGAAGGATATCAAAG
AAACAAATCACGAAAATGCAATAAAGAAAATCCAATCCTATCCAATTGGA
GTTGGGAATCCAAGTTTGATGTTTCCTGGATTTAATGAATCAGTAAGCCC
ATTTAGCACGACTGCTGCCAGCATTCAAGGCGGATATTGTTCTCCTTATA
TATATAACTCCAACCCTGCAGCAAACTACATCTCGTACTTTAGTTCTGGA
TTGCATAACCTCCCGATATCTGGACAATATCCCAATATTCTATCCAGAGA
ATCCATGGCTAATACCGATACCAGCTACATGAATCCCGCAAAATCTGAAC
TTTCTTCAAAAGCATTGAAGCTCAACCAGGTGTCTGAGTGTGAGGATATC
GAACCAGCAGACCAAACAACGAATTTGCTCAACCAACAATCCTATGAAAC
CTCAAATAGTGACTACCATTCAATGTCAAGCACAAATTCATCTTATCTCA
ATTATGAAAAAATATTCAACACAAATATCACAGAAAATCCTCTATCAAGA
ACCAACACAAATAGTTCCACCAACAGCAGCTCCTACAATCCGTATTTCTC
TCAGAATACGTATGGGAATTTTCACAATCCAGACTATGATACGCCTATTT
ACAGTTACAACTAATTTTTTTTCTAATATTTTTATTG

protein sequence of SMED30023736-orf-1

>SMED30023736-orf-1 ID=SMED30023736-orf-1|Name=SMED30023736-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=487bp
MRSISTSQATDIQQNICDQFSNSGDYKSLDGPVVSSPSESDSNVNYASFH
QFGMVSYEQSCLAAPALDYQTNQDSVISPDSGAMGFTQEQVACVCEVLEN
GGNIDRLALFIWSLPPCQQLQTNESVLTAKAAVAFHRQNFKELYRILESY
TFSPHNHYKLQALWLQAHYIEEEKIKGRSLGAVAKYRIRRKYPLPRTIWD
GEETSYCFKEKSRAVLRQWYLHNPYPSPREKKDLAEMTSLTTTQVSNWFK
NRRQRDRAAENKDKHDDLSASEADSESLKDIKETNHENAIKKIQSYPIGV
GNPSLMFPGFNESVSPFSTTAASIQGGYCSPYIYNSNPAANYISYFSSGL
HNLPISGQYPNILSRESMANTDTSYMNPAKSELSSKALKLNQVSECEDIE
PADQTTNLLNQQSYETSNSDYHSMSSTNSSYLNYEKIFNTNITENPLSRT
NTNSSTNSSSYNPYFSQNTYGNFHNPDYDTPIYSYN*

Aliases

The feature 'sine oculis-1/2' has the following synonyms


Synonym
six-1/2

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000075	optic cup

Vocabulary: **INTERPRO**
Term	Definition
IPR001356	Homeobox_dom
IPR031701	SIX1_SD
IPR009057	Homeobox-like_sf
IPR017970	Homeobox_CS

Vocabulary: **molecular function**
Term	Definition
GO:0003677	DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **biological process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 202..263 e-value: 4.5E-16 score: 69.4
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 207..257 e-value: 5.6E-13 score: 48.5
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 199..259 score: 14.771
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 206..257 e-value: 8.39179E-17 score: 72.276
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 201..271 e-value: 5.1E-19 score: 69.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..280
None	No IPR available	PANTHER	PTHR10390:SF61	SIX HOMEOBOX 2	coord: 83..369
None	No IPR available	PANTHER	PTHR10390	HOMEOBOX PROTEIN SIX	coord: 83..369
IPR031701	Homeobox protein SIX1, N-terminal SD domain	PFAM	PF16878	SIX1_SD	coord: 86..196 e-value: 1.6E-44 score: 150.9
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 234..257
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 199..261