General transcription factor II-I repeat domain-containing protein 2

Overview
NameGeneral transcription factor II-I repeat domain-containing protein 2
Smed IDSMED30023683
Length (bp)360
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30023683

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30023683 SmedASXL_067548SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30023683 dd_Smed_v4_36071_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30023683 dd_Smed_v4_36071_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30023683 dd_Smed_v4_36071_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30023683 dd_Smed_v6_36071_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Zebrafish
Match: CR392001.3 (pep chromosome:GRCz11:8:38963323:38965260:-1 gene:ENSDARG00000117159.1 transcript:ENSDART00000181495.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR392001.3)

HSP 1 Score: 55.8398 bits (133), Expect = 7.363e-10
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 TTASFAAALAIGRNGKPFSDCEYLTTALIQCSEHLFNDFKNKREI 135
            T ASF A   I + GKPF+D +Y+  + I  SEHLF+DFKNK EI
Sbjct:  102 TAASFVATREIIKRGKPFTDGDYMKESFINISEHLFSDFKNKTEI 146

HSP 2 Score: 45.4394 bits (106), Expect = 3.779e-6
Identity = 28/88 (31.82%), Postives = 37/88 (42.05%), Query Frame = 1 
Query:  148 LELVDLRSSTLWTDKFKTLRGDLEKTEENHLDM------------------ISKCWASLPTKLTCIKKVAFVLLSGFGSSYYCEQRFS 357
            +E+ D+    LW  KFK L  +LE        +                  I   W +LP     +K  AF +LS FGS+Y CEQ FS
Sbjct:  506 MEMADISDKDLWVSKFKRLTAELEDVTRQKAQLAQSHKWSEMEGLPVPEKLIYDTWNALPDCYKNMKTYAFGVLSIFGSTYLCEQIFS 593
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. TrEMBL
Match: A0A1A8V8N3 (Uncharacterized protein OS=Nothobranchius furzeri OX=105023 GN=Nfu_g_1_015633 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.468e-14
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:  148 LELVDLRSSTLWTDKFKTLRGDLEKTE-ENHLDMISKCWASLPTKLTCIKKVAFVLLSGFGSSYYCEQRFSQ 360
            ++L++L+SSTLW  KF  LR  LE T   +H   I  CW SLP +  C+K +A  LL+ FGS+Y CEQ FS 
Sbjct:    3 MQLIELKSSTLWGTKFAELRQQLESTAVHDHGACIFSCWTSLPDRFNCLKNIAQALLTVFGSTYLCEQIFSH 74
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. TrEMBL
Match: A0A087TCS8 (General transcription factor II-I repeat domain-containing protein 2A (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_02296 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.812e-13
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:  133 ITNCCLELVDLRSSTLWTDKFKTLRGDLEKTEENHLDMISKCWASLPTK 279
            I +  LE++D +SSTLWTDKFK LR DLE TE+NH  MIS CWASLPT+
Sbjct:  349 IDSFSLEMIDFKSSTLWTDKFKKLRNDLENTEDNHFLMISTCWASLPTR 397
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. TrEMBL
Match: A0A1A8EEQ0 (Uncharacterized protein OS=Nothobranchius kadleci OX=1051664 GN=Nfu_g_1_015633 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-12
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:  148 LELVDLRSSTLWTDKFKTLRGDLEKTE-ENHLDMISKCWASLPTKLTCIKKVAFVLLSGFGSSYYCEQRFSQ 360
            ++L+ L+SSTLW  KF  LR  LE T   +H   I  CW S P +  C+K +A  LL+ FGS+Y CEQ FS 
Sbjct:    3 MQLIKLKSSTLWGTKFAELRQQLESTAVHDHGACIFSCWTSPPDRFNCLKNIAQALLTVFGSTYLCEQIFSH 74
[Close]
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. TrEMBL
Match: A0A087T138 (Zinc finger MYM-type protein 6 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_18236 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.200e-11
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 TTASFAAALAIGRNGKPFSDCEYLTTALIQCSEHLFNDFKNKREI 135
            T+A+F AAL+IG NGKPF+D E+L  A I CSEHLFNDF NK++I
Sbjct:   56 TSANFVAALSIGTNGKPFTDGEFLQNAFINCSEHLFNDFANKKQI 100
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. TrEMBL
Match: A0A1A8K9W9 (Uncharacterized protein OS=Nothobranchius kuhntae OX=321403 GN=Nfu_g_1_015633 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.352e-11
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:  148 LELVDLRSSTLWTDKFKTLRGDLEKTE-ENHLDMISKCWASLPTKLTCIKKVAFVLLSGFGSSYYCEQRFSQ 360
            ++L +L+SSTLW  KF  LR  LE T   +H   I  CW SLP +  C+K +A  LL+ FGS+Y CEQ FS 
Sbjct:  207 MQLTELKSSTLWGTKFAELRQLLESTAVHDHGACIYSCWTSLPDRFNCLKNIAQALLTVFGSTYLCEQIFSH 278
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Cavefish
Match: ENSAMXT00000049756.1 (pep primary_assembly:Astyanax_mexicanus-2.0:21:10276151:10280466:-1 gene:ENSAMXG00000035254.1 transcript:ENSAMXT00000049756.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 47.3654 bits (111), Expect = 5.204e-7
Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    1 TTASFAAALAIGRNGKPFSDCEYLTTALIQCSEHLFNDFKNKREI 135
            T AS+  A  I ++GKPF+D EY+  A + C+E LF+D  NK  I
Sbjct:   94 TEASYNLASCIAKHGKPFTDGEYVKEAFLSCAETLFDDLPNKDTI 138
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Cavefish
Match: ENSAMXT00000053332.1 (pep primary_assembly:Astyanax_mexicanus-2.0:1:2353647:2355530:-1 gene:ENSAMXG00000042872.1 transcript:ENSAMXT00000053332.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 46.9802 bits (110), Expect = 8.084e-7
Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    1 TTASFAAALAIGRNGKPFSDCEYLTTALIQCSEHLFNDFKNKREI 135
            T AS+  A  I ++GKPF+D EY+  A + C+E LF+D  NK  I
Sbjct:   94 TEASYNLASCIAKHGKPFTDGEYVKEAFLSCAETLFDDLPNKDTI 138
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Medaka
Match: ENSORLT00000035623.1 (pep primary_assembly:ASM223467v1:9:5067000:5069708:1 gene:ENSORLG00000026230.1 transcript:ENSORLT00000035623.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 58.5362 bits (140), Expect = 6.833e-11
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:  148 LELVDLRSSTLWTDKFKTLRGDLEKTEENHLDMIS------------------KCWASLPTKLTCIKKVAFVLLSGFGSSYYCEQRFSQ 360
            L+  DL++S LW +KFK+L  DLE+ E    ++ S                  K W +LP     +++V+  +L+ FGS+Y CEQ FS 
Sbjct:  539 LQAADLKASDLWVNKFKSLNEDLERLERQKAELASQHKWEEIKKLQPADQLILKTWNALPVTFFTLQRVSVAVLTMFGSTYACEQSFSH 627

HSP 2 Score: 46.595 bits (109), Expect = 1.216e-6
Identity = 20/45 (44.44%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 TTASFAAALAIGRNGKPFSDCEYLTTALIQCSEHLFNDFKNKREI 135
             +ASFAAALAI +NGKPF+D E+  + ++  +  L+ +F +K +I
Sbjct:  123 NSASFAAALAIVKNGKPFTDGEFAKSFMLDVANELYANFSDKDKI 167
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Medaka
Match: ENSORLT00000028910.1 (pep primary_assembly:ASM223467v1:18:2548265:2550717:1 gene:ENSORLG00000029755.1 transcript:ENSORLT00000028910.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 58.5362 bits (140), Expect = 6.870e-11
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:  148 LELVDLRSSTLWTDKFKTLRGDLEKTEENHLDMIS------------------KCWASLPTKLTCIKKVAFVLLSGFGSSYYCEQRFSQ 360
            L+  DL++S LW +KFK+L  DLE+ E    ++ S                  K W +LP     +++V+  +L+ FGS+Y CEQ FS 
Sbjct:  512 LQAADLKASDLWVNKFKSLNEDLERLERQKAELASQHKWEEIKKLQPADQLILKTWNALPVTFFTLQRVSVAVLTMFGSTYACEQSFSH 600

HSP 2 Score: 45.0542 bits (105), Expect = 3.510e-6
Identity = 19/42 (45.24%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 TTASFAAALAIGRNGKPFSDCEYLTTALIQCSEHLFNDFKNK 126
             +ASFAAALAI +NGKPF+D E+  + ++  +  L+ +F +K
Sbjct:   96 NSASFAAALAIVKNGKPFTDGEFAKSFMLDVANELYANFSDK 137
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Medaka
Match: ENSORLT00000038486.1 (pep primary_assembly:ASM223467v1:11:14048492:14066451:1 gene:ENSORLG00000022236.1 transcript:ENSORLT00000038486.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 58.5362 bits (140), Expect = 7.615e-11
Identity = 29/87 (33.33%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:  148 LELVDLRSSTLWTDKFKTLRGDLEKTEENHLDMIS----------------KCWASLPTKLTCIKKVAFVLLSGFGSSYYCEQRFSQ 360
            L+  DL++S LW +KFK++  DLE+ E    ++ S                K W +LP     +++V+  +L+ FGS+Y CEQ FS 
Sbjct:  402 LQAADLKASDLWVNKFKSMNEDLERLERQKAELASQHKWCYEEWLKDQLILKTWNALPVTFFTLQRVSVAVLTMFGSTYACEQSFSH 488

HSP 2 Score: 45.8246 bits (107), Expect = 2.095e-6
Identity = 20/45 (44.44%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 TASFAAALAIGRNGKPFSDCEYLTTALIQCSEHLFNDFKNKREIT 138
            +ASFAAALAI +NGK F+D E+  + ++  +  L+++F +K +IT
Sbjct:    6 SASFAAALAIVKNGKSFTDGEFAKSFMLDVANELYDNFSDKDKIT 50
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Medaka
Match: ENSORLT00000033718.1 (general transcription factor II-I repeat domain-containing protein 2 [Source:NCBI gene;Acc:110015985])

HSP 1 Score: 54.299 bits (129), Expect = 2.578e-9
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 TTASFAAALAIGRNGKPFSDCEYLTTALIQCSEHLFNDFKNKREI 135
            T  SF  A  I ++GKPF+D EYL    I+ S+HLF+DFKNK EI
Sbjct:   99 TCTSFVVAQEIVKHGKPFTDGEYLKETFIKISKHLFSDFKNKDEI 143
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Medaka
Match: ENSORLT00000041272.1 (pep primary_assembly:ASM223467v1:18:30803263:30808674:-1 gene:ENSORLG00000024130.1 transcript:ENSORLT00000041272.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 53.1434 bits (126), Expect = 5.761e-9
Identity = 26/80 (32.50%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:  133 ITNCCLELVDLRSSTLWTDKFKTLRGDLEKTEENHL----DMISKCWASLPTKLTCIKKVAFVLLSGFGSSYYCEQRFSQ 360
            + +  L+  DL++S LW +KFK+L  DL++ E         +I K W +L      +++ +  +L+ FGS+  CEQ FS 
Sbjct:  430 VRDSVLQAADLKASDLWVNKFKSLNEDLDRLERQQAALANQLIVKTWNALTVTFFTLQRGSVAVLTMFGSTSACEQTFSH 509
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Planmine SMEST
Match: SMESG000052058.1 (SMESG000052058.1)

HSP 1 Score: 49.2914 bits (116), Expect = 4.259e-8
Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:  151 ELVDLRSSTLWTDKFKTLRGDLE-KTEENHLDM-----ISKCWASLPTKLTCIKKVAFVLLSGFGSSYYCEQRFSQ 360
            EL++L++S  W +KF  LR  +E +  EN +       I K W SLP + + +K +A  +++ F S+Y+CE  F+ 
Sbjct:   39 ELLELQASLFWREKFVDLRIMVENQLRENVITFNMDGEILKLWKSLPNQFSSLKNLAIAVITVFPSTYFCEFLFAH 114
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Planmine SMEST
Match: SMESG000052058.1 (SMESG000052058.1)

HSP 1 Score: 48.9062 bits (115), Expect = 5.086e-8
Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:  151 ELVDLRSSTLWTDKFKTLRGDLE-KTEENHLDM-----ISKCWASLPTKLTCIKKVAFVLLSGFGSSYYCEQRFSQ 360
            EL++L++S  W +KF  LR  +E +  EN +       I K W SLP + + +K +A  +++ F S+Y+CE  F+ 
Sbjct:   34 ELLELQASLFWREKFVDLRIMVENQLRENVITFNMDGEILKLWKSLPNQFSSLKNLAIAVITVFPSTYFCEFLFAH 109
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Planmine SMEST
Match: SMESG000000894.1 (SMESG000000894.1)

HSP 1 Score: 42.3578 bits (98), Expect = 7.623e-6
Identity = 26/78 (33.33%), Postives = 40/78 (51.28%), Query Frame = 1 
Query:    1 TTASFAAALAIGRNGKPFSDCEYLTTALIQCSEHLFNDFKNKREITNCCLELVDLRSSTLWTDKFKTLRGDLEKTEEN 234
            T  SF  A  I +  KPF+D EYL    ++ S+ L ++FKN+ EI      + +L +S       KT+R  + K  +N
Sbjct:   42 TPVSFIVANEISKRVKPFTDGEYLKECFMKLSQELVHNFKNRNEIIKM---IQNLPTSA------KTIRDRISKMAQN 110
The following BLAST results are available for this feature:
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CR392001.37.363e-1055.56pep chromosome:GRCz11:8:38963323:38965260:-1 gene:... [more]
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1A8V8N38.468e-1448.61Uncharacterized protein OS=Nothobranchius furzeri ... [more]
A0A087TCS82.812e-1367.35General transcription factor II-I repeat domain-co... [more]
A0A1A8EEQ01.690e-1247.22Uncharacterized protein OS=Nothobranchius kadleci ... [more]
A0A087T1381.200e-1166.67Zinc finger MYM-type protein 6 (Fragment) OS=Stego... [more]
A0A1A8K9W92.352e-1148.61Uncharacterized protein OS=Nothobranchius kuhntae ... [more]
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSAMXT00000049756.15.204e-746.67pep primary_assembly:Astyanax_mexicanus-2.0:21:102... [more]
ENSAMXT00000053332.18.084e-746.67pep primary_assembly:Astyanax_mexicanus-2.0:1:2353... [more]
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000035623.16.833e-1133.71pep primary_assembly:ASM223467v1:9:5067000:5069708... [more]
ENSORLT00000028910.16.870e-1133.71pep primary_assembly:ASM223467v1:18:2548265:255071... [more]
ENSORLT00000038486.17.615e-1133.33pep primary_assembly:ASM223467v1:11:14048492:14066... [more]
ENSORLT00000033718.12.578e-955.56general transcription factor II-I repeat domain-co... [more]
ENSORLT00000041272.15.761e-932.50pep primary_assembly:ASM223467v1:18:30803263:30808... [more]
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BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000052058.14.259e-834.21SMESG000052058.1[more]
SMESG000052058.15.086e-834.21SMESG000052058.1[more]
SMESG000000894.17.623e-633.33SMESG000000894.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30023683 ID=SMED30023683|Name=General transcription factor II-I repeat domain-containing protein 2|organism=Schmidtea mediterranea sexual|type=transcript|length=360bp
ACAACTGCTAGCTTTGCAGCAGCTCTTGCGATTGGACGCAACGGAAAACC
ATTTTCAGATTGTGAATATTTAACGACTGCACTTATTCAATGTTCCGAAC
ATCTTTTTAATGATTTCAAAAATAAAAGAGAAATCACCAATTGTTGCTTA
GAGCTGGTTGATTTAAGAAGTTCAACTTTATGGACTGATAAATTTAAAAC
TTTACGTGGAGATTTAGAGAAAACCGAAGAAAATCATCTTGATATGATAT
CAAAATGCTGGGCATCTCTTCCAACAAAATTAACGTGTATCAAAAAAGTT
GCATTTGTTCTTTTATCTGGGTTTGGTTCAAGCTATTATTGTGAACAAAG
ATTTTCACAA
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protein sequence of SMED30023683-orf-1

>SMED30023683-orf-1 ID=SMED30023683-orf-1|Name=SMED30023683-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=120bp
TTASFAAALAIGRNGKPFSDCEYLTTALIQCSEHLFNDFKNKREITNCCL
ELVDLRSSTLWTDKFKTLRGDLEKTEENHLDMISKCWASLPTKLTCIKKV
AFVLLSGFGSSYYCEQRFSQ
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0046983protein dimerization activity
GO:0003676nucleic acid binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head