replication factor C subunit 3

Overview
Namereplication factor C subunit 3
Smed IDSMED30023617
Length (bp)1179
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of replication factor C subunit 3 (SMED30023617) t-SNE clustered cells

Violin plots show distribution of expression levels for replication factor C subunit 3 (SMED30023617) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of replication factor C subunit 3 (SMED30023617) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for replication factor C subunit 3 (SMED30023617) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30023617

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30023617SMESG000077027.1 SMESG000020661.1 SmedASXL_013965SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
neoblastSMED30023617SMESG000077027.1 SMESG000020661.1 dd_Smed_v4_9695_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
reproductive organSMED30023617SMESG000077027.1 SMESG000020661.1 Contig39741newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30023617SMESG000077027.1 SMESG000020661.1 Contig39741uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
zeta neoblastSMED30023617SMESG000077027.1 SMESG000020661.1 dd_Smed_v4_9695_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Human
Match: RFC3 (replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971])

HSP 1 Score: 422.935 bits (1086), Expect = 2.873e-147
Identity = 203/344 (59.01%), Postives = 270/344 (78.49%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFK 1082
            MSLW DK++P +L  LDYHK+QA +++ LV  GDFPHLL+ G +G+GKKTRI CILRELYG GV+KLR+EHQ   TPS KKI+I+ + SNYH+EVNPSD G  DRV+IQ+++K+ A + QL++  Q++FKV+++ EVDKLT DAQHALRRTMEKY+S+CRLILC  ST+K+IP IRSRCL +RVP+PS ++I  ++ + C+KE L +P  LA R+AE S  NLR+ LL+ EAC+VQQYPFT +Q I   DW  +++ET + I+S+Q+P++LLEVRGRLYELL HCIP   I++ L  EL   CD  LK  + Q+AA YE+++ LG KAI+HLEAFVAKFM+++K
Sbjct:    1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYK 344
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Human
Match: RFC3 (replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971])

HSP 1 Score: 370.933 bits (951), Expect = 1.304e-127
Identity = 178/305 (58.36%), Postives = 239/305 (78.36%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDL 965
            MSLW DK++P +L  LDYHK+QA +++ LV  GDFPHLL+ G +G+GKKTRI CILRELYG GV+KLR+EHQ   TPS KKI+I+ + SNYH+EVNPSD G  DRV+IQ+++K+ A + QL++  Q++FKV+++ EVDKLT DAQHALRRTMEKY+S+CRLILC  ST+K+IP IRSRCL +RVP+PS ++I  ++ + C+KE L +P  LA R+AE S  NLR+ LL+ EAC+VQQYPFT +Q I   DW  +++ET + I+S+Q+P++LLEVRGRLYELL HCIP   I++   +E +  CD+
Sbjct:    1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKACKEE-SRSCDI 304
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Human
Match: RFC3 (replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971])

HSP 1 Score: 113.235 bits (282), Expect = 3.930e-30
Identity = 54/103 (52.43%), Postives = 74/103 (71.84%), Query Frame = 3 
Query:  657 ESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDL 965
            E L +P  LA R+AE S  NLR+ LL+ EAC+VQQYPFT +Q I   DW  +++ET + I+S+Q+P++LLEVRGRLYELL HCIP   I++   +E +  CD+
Sbjct:    1 EGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKACKEE-SRSCDI 102
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Human
Match: RFC5 (replication factor C subunit 5 [Source:HGNC Symbol;Acc:HGNC:9973])

HSP 1 Score: 100.523 bits (249), Expect = 3.484e-23
Identity = 71/233 (30.47%), Postives = 118/233 (50.64%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSD-VGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKV 755
            W +K++P TL++L  H+D  + IQ  +     PHLL+ G  G+GK + I    ++LY         + +EF               +  +E+N SD  GI    II+  I S AST    +I +K FK++++ E D +T DAQ+ALRR +EK+  + R  L     +KIIPA++SRC   R    + + +   +    ++E + I     K +   S G++R+ L I ++  +
Sbjct:   22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY---------KDKEF--------------GSMVLELNASDDRGID---IIRGPILSFAST---RTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNM 225
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Human
Match: RFC2 (replication factor C subunit 2 [Source:HGNC Symbol;Acc:HGNC:9970])

HSP 1 Score: 96.2857 bits (238), Expect = 1.656e-21
Identity = 65/224 (29.02%), Postives = 114/224 (50.89%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            W +K++P+ L+E+  ++D  +R++     G+ P+++I G  G+GK T I C+ R L G               P+ K   + L  SN        D GI    ++++ IK  A   Q  ++ +   K+I++ E D +T  AQ ALRRTME Y  + R  L   +++KII  I+SRC  +R    ++ +I   +++  +KE +       + I   ++G++RQ L
Sbjct:   38 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG---------------PALKDAMLELNASN--------DRGID---VVRNKIKMFAQ--QKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQAL 233
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Celegans
Match: rfc-3 (RFC (DNA replication factor) family [Source:UniProtKB/TrEMBL;Acc:Q18547])

HSP 1 Score: 320.087 bits (819), Expect = 2.179e-107
Identity = 160/347 (46.11%), Postives = 245/347 (70.61%), Query Frame = 3 
Query:   51 MSLWADKHKP---LTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQ-QYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVF 1079
            M+LW DK++P   L    +DYH +QAN ++ L  +   PHLL CG +G+GKKTRI C+LRELYG GV+K +L  + F +PS+KK++I  V SNYHIE+ PSDVGI+DRV++QDL+K  A T Q++S  Q+ FKV+V+ E D LT DAQH LRRTMEKY ++C+++L  ES ++II  ++SRC+ I VP+P+++++ K++    ++ES ++P  + ++I E S+GNLR+ +L+ EA +++ +    ++  I +P+W  +I+ET  +I+ +QS   LL+VR RLYELL+ CIP + I ++L + L   C   +   +   AA++E+++ LGQKAIFHLE FVA FM ++
Sbjct:    1 MALWVDKYRPKDLLGKDGVDYHIEQANHLKFLSADC-MPHLLFCGPSGAGKKTRIKCLLRELYGVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEALRMENESGVAESVVIPVPEWEIYIQETARLILQKQSSDMLLKVRERLYELLSRCIPPTVIFKKLLEHLLPKCPPQIAREVVSEAAKFEHRLVLGQKAIFHLEGFVAAFMDIY 346
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Celegans
Match: rfc-2 (RFC (DNA replication factor) family [Source:UniProtKB/TrEMBL;Acc:O44175])

HSP 1 Score: 86.2705 bits (212), Expect = 1.384e-18
Identity = 64/251 (25.50%), Postives = 119/251 (47.41%), Query Frame = 3 
Query:   42 KYKMSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSD-VGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIV 791
            K +++ W +K++P  L+++  +++   R++ +   G+ P++++ G  G GK T +  + REL G  V +  LE                        +N SD  GI    +++  IK+ A T    ++ +   K+I++ E D +T  AQ ALRRTME Y  + R  L    + KII  I+SRC  +R    S  ++   +    + E +       + I   ++G++RQ L   +A  V  Y   + ++++
Sbjct:    6 KQQLAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGDKVKEAVLE------------------------LNASDERGID---VVRHRIKTFAQTKV--TLPEGRHKIIILDEADSMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQAT-VNAYELVNKENVL 226
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Celegans
Match: F44B9.8 (Probable replication factor C subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:P34429])

HSP 1 Score: 86.6557 bits (213), Expect = 1.500e-18
Identity = 77/303 (25.41%), Postives = 136/303 (44.88%), Query Frame = 3 
Query:   21 FLNLKYLKYKMSL---WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDV-GIHDRVIIQDLIKSSASTLQLDSIQQKE------FKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDN---QSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYE 890
            FLNL  +    +    W +K++P  L EL  H+     +   + N   PHLL  G  G+GK T +    R++Y               +P+         +++  +E+N SD  GI    ++++ I + A T  L +           FK++++ E D +T DAQ+ALRR +EKY  + R  +       I+PAI+SRC   R     +K I   +    + E L +       +   SKG++R  +   ++  +     ++N   Q I  P     +KE V  ++++ S K +  ++ +L+E
Sbjct:   15 FLNLTKMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMY---------------SPTK--------MASMVLELNASDERGID---VVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKE-MKEVVKTLLNDPSKKCMNTIQTKLFE 290
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Celegans
Match: rfc-4 (Replication factor C subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:P53016])

HSP 1 Score: 82.4185 bits (202), Expect = 3.118e-17
Identity = 60/230 (26.09%), Postives = 108/230 (46.96%), Query Frame = 3 
Query:   48 KMSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSD-VGIHD-RVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            K+  W +K++P TL ++ Y  +    ++  +   D PHLL  G  G+GK +      R+L+ + +              H ++          +++N SD  GI   R  IQ   KSS      + + +   K+I++ EVD +T +AQ A+RR +E +  + R IL     +++IP + SRC   R  S   +   + + + C  E   +     K++ E S+G+LR+ +
Sbjct:   13 KVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPKNI-------------FHDRV----------LDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLK--LKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAV 217
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Fly
Match: RfC38 (gene:FBgn0028700 transcript:FBtr0080225)

HSP 1 Score: 386.341 bits (991), Expect = 3.188e-133
Identity = 187/356 (52.53%), Postives = 257/356 (72.19%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMDESF 1118
            M+LW DK++P  LS+LD+HKDQA  ++ L    DFPHL+  G +G+GKKTRI C+LRE+YG GV++LR E   F TPS++K+++  V SNYH+EVNPSD G++DR ++ DLIK  A T Q++   Q+EFKVIV+ E D+LT DAQHALRRTMEKY+++CR+I+   ST++IIPAIRSRCL IRV +P+E EI  I+ +TC++E L +P  LAKR+ + S+ NLR+ LL+ EA KV + PFT NQ I   DW  F++ET S IISEQ+P KL ++R RLYELL   +P + I R L ++L   CD+ +K    + A +YE++M  G K IFHLEAFVA+FM+++K   +   M + F
Sbjct:    1 MALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNCDMSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLSELDMTDDF 356
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Fly
Match: RfC38 (gene:FBgn0028700 transcript:FBtr0344786)

HSP 1 Score: 386.341 bits (991), Expect = 3.188e-133
Identity = 187/356 (52.53%), Postives = 257/356 (72.19%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMDESF 1118
            M+LW DK++P  LS+LD+HKDQA  ++ L    DFPHL+  G +G+GKKTRI C+LRE+YG GV++LR E   F TPS++K+++  V SNYH+EVNPSD G++DR ++ DLIK  A T Q++   Q+EFKVIV+ E D+LT DAQHALRRTMEKY+++CR+I+   ST++IIPAIRSRCL IRV +P+E EI  I+ +TC++E L +P  LAKR+ + S+ NLR+ LL+ EA KV + PFT NQ I   DW  F++ET S IISEQ+P KL ++R RLYELL   +P + I R L ++L   CD+ +K    + A +YE++M  G K IFHLEAFVA+FM+++K   +   M + F
Sbjct:    1 MALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNCDMSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLSELDMTDDF 356
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Fly
Match: RfC4 (gene:FBgn0260985 transcript:FBtr0073264)

HSP 1 Score: 94.3597 bits (233), Expect = 2.306e-21
Identity = 66/224 (29.46%), Postives = 110/224 (49.11%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            W +K++P+   E+  ++D   R+    T G+ P+++I G  G GK T I C+ R L G                S+K+  + L  SN        + GI    ++++ IK  A   Q  ++ +   K++++ E D +T  AQ ALRRTME Y S+ R  L   ++ KII  I+SRC  +R    S+ ++   +I   + E L       + I   ++G++RQGL
Sbjct:   18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGD---------------SYKEAVLELNASN--------ERGID---VVRNKIKMFAQ--QKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGL 213
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Fly
Match: CG8142 (gene:FBgn0030871 transcript:FBtr0074472)

HSP 1 Score: 88.5817 bits (218), Expect = 2.986e-19
Identity = 64/232 (27.59%), Postives = 110/232 (47.41%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSD-VGIH-DRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEAC 749
            W +K++P  + ++    +    ++  V  GD P++L+ G  G+GK + I    R+++G                         +  +  +E+N SD  GI+  R  I++  + SAS+++ D      FK+I++ E D +T  AQ ALRRTMEK   S R  L     ++II  I SRC   R  +  E ++   +   C+ E + I     K I + S G+LR+ +   ++C
Sbjct:   32 WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGD------------------------MFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSC 239
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Fly
Match: RfC3 (gene:FBgn0032244 transcript:FBtr0080019)

HSP 1 Score: 87.0409 bits (214), Expect = 9.139e-19
Identity = 66/225 (29.33%), Postives = 110/225 (48.89%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSD-VGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            W +K++P  L +L  H++  + I   ++    PHLL  G  G+GK + I    R+LY           Q+F               +  +E+N SD  GI    I++  I + AST    +I    FK+I++ E D +T DAQ+ALRR +EKY  + R  +     +KIIPA++SRC   R    S+ ++   +    + E++ I     + +   +KG++R+ L
Sbjct:   13 WVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYS---------PQQF--------------KSMVLELNASDDRGIG---IVRGQILNFAST---RTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVL 208
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Zebrafish
Match: rfc3 (replication factor C (activator 1) 3 [Source:ZFIN;Acc:ZDB-GENE-020809-3])

HSP 1 Score: 419.468 bits (1077), Expect = 4.481e-146
Identity = 203/344 (59.01%), Postives = 271/344 (78.78%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFK 1082
            MSLW DK++P +L++LDYHK+QAN+++ LV  GDFPHLL+ G +G+GKKTRI C+LRELYG GV+KLR+EHQ   TPS KK++IN + SNYH+EVNPSD G  DRV+IQ+LIK+ A + Q+ S  Q+EFKV+++ EVD+LT DAQHALRRTMEKY+++CRLILC  ST+K+I  IRSRCL +RVP PS +E+  ++   C+KE L++P  LAK+IAE S  NLR+ LL+ EAC+VQQYPF+ +Q I   DW  +++ET + I+S+QSP++LLEVR RLYELL HCIP   I++ L  EL + CD  LK  + Q+AA YE+++ LG KAI+HLEAFVAKFM+++K
Sbjct:    1 MSLWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAGVEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQIQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYPFSPDQDIPETDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCIPPEVIMKGLVTELLSNCDGHLKAEVAQMAAYYEHRLQLGNKAIYHLEAFVAKFMAIYK 344
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Zebrafish
Match: rfc3 (replication factor C (activator 1) 3 [Source:ZFIN;Acc:ZDB-GENE-020809-3])

HSP 1 Score: 419.468 bits (1077), Expect = 4.481e-146
Identity = 203/344 (59.01%), Postives = 271/344 (78.78%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFK 1082
            MSLW DK++P +L++LDYHK+QAN+++ LV  GDFPHLL+ G +G+GKKTRI C+LRELYG GV+KLR+EHQ   TPS KK++IN + SNYH+EVNPSD G  DRV+IQ+LIK+ A + Q+ S  Q+EFKV+++ EVD+LT DAQHALRRTMEKY+++CRLILC  ST+K+I  IRSRCL +RVP PS +E+  ++   C+KE L++P  LAK+IAE S  NLR+ LL+ EAC+VQQYPF+ +Q I   DW  +++ET + I+S+QSP++LLEVR RLYELL HCIP   I++ L  EL + CD  LK  + Q+AA YE+++ LG KAI+HLEAFVAKFM+++K
Sbjct:    1 MSLWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAGVEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQIQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYPFSPDQDIPETDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCIPPEVIMKGLVTELLSNCDGHLKAEVAQMAAYYEHRLQLGNKAIYHLEAFVAKFMAIYK 344
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Zebrafish
Match: rfc3 (replication factor C (activator 1) 3 [Source:ZFIN;Acc:ZDB-GENE-020809-3])

HSP 1 Score: 372.474 bits (955), Expect = 6.833e-128
Identity = 193/344 (56.10%), Postives = 254/344 (73.84%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFK 1082
            MSLW DK++P +L++LDYHK+QAN+++ LV  GDFPHLL+ G +G+GKKTRI C+LRELYG GV+KLR+EHQ   TPS KK++IN + SNYH+EVNPSD G  DRV+IQ+LIK+ A + Q+ S  Q+EFKV+++ EVD+LT DAQHALRRTMEKY+++CRLILC  ST+K+I  IRSRCL +RVP PS +E+  ++   C+KE L++P  LAK+IAE S  NLR+ LL+ EAC+VQ + +              I ET  I I      +LLEVR RLYELL HCIP   I++ L  EL + CD  LK  + Q+AA YE+++ LG KAI+HLEAFVAKFM+++K
Sbjct:    1 MSLWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAGVEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQIQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQHFIYLH------------ILETKLIHIC-----RLLEVRARLYELLTHCIPPEVIMKGLVTELLSNCDGHLKAEVAQMAAYYEHRLQLGNKAIYHLEAFVAKFMAIYK 327
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Zebrafish
Match: rfc3 (replication factor C (activator 1) 3 [Source:ZFIN;Acc:ZDB-GENE-020809-3])

HSP 1 Score: 372.474 bits (955), Expect = 6.833e-128
Identity = 193/344 (56.10%), Postives = 254/344 (73.84%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFK 1082
            MSLW DK++P +L++LDYHK+QAN+++ LV  GDFPHLL+ G +G+GKKTRI C+LRELYG GV+KLR+EHQ   TPS KK++IN + SNYH+EVNPSD G  DRV+IQ+LIK+ A + Q+ S  Q+EFKV+++ EVD+LT DAQHALRRTMEKY+++CRLILC  ST+K+I  IRSRCL +RVP PS +E+  ++   C+KE L++P  LAK+IAE S  NLR+ LL+ EAC+VQ + +              I ET  I I      +LLEVR RLYELL HCIP   I++ L  EL + CD  LK  + Q+AA YE+++ LG KAI+HLEAFVAKFM+++K
Sbjct:    1 MSLWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAGVEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQIQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQHFIYLH------------ILETKLIHIC-----RLLEVRARLYELLTHCIPPEVIMKGLVTELLSNCDGHLKAEVAQMAAYYEHRLQLGNKAIYHLEAFVAKFMAIYK 327
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Zebrafish
Match: rfc5 (replication factor C (activator 1) 5 [Source:ZFIN;Acc:ZDB-GENE-040907-1])

HSP 1 Score: 103.99 bits (258), Expect = 1.271e-24
Identity = 76/231 (32.90%), Postives = 118/231 (51.08%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVI--IQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEA 746
            W +K++P TL +L  H+D  + IQ  ++    PHLL  G  G+GK + I    R+LY                   K  + N +V    +E+N SD    DR I  ++  I S AST    +I +K FK++++ E D +T DAQ+ALRR +EK+  + R  L     +KIIPA++SRC   R    S+ ++   +    Q+ES+ I     K I   S G++R+ L I ++
Sbjct:   16 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLY-------------------KDKEFNSMV----LELNASD----DRGIDVVRGPILSFAST---RTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQS 216
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Xenopus
Match: znf804a (zinc finger protein 804A [Source:Xenbase;Acc:XB-GENE-6458561])

HSP 1 Score: 426.402 bits (1095), Expect = 9.116e-149
Identity = 204/344 (59.30%), Postives = 272/344 (79.07%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFK 1082
            MSLW DK++P +LS+LDYHK+QA +++ LV  GDFPHLL+ G +G+GKKTRI C+LRELYG GV+KLR+EHQ   TPS KKI+I+ + SNYH+EVNPSD G  DRV+IQ+L+K+ A + QL++  Q++FKV+++ EVDKLT DAQHALRRTMEKY+S+CRLILC  ST+K+I  IRSRCL +R+ +PS  EI  ++ S C+KE LI+P+ LA++IAE S  NLR+ LL+ EAC+VQQYPF+ +Q +   DW  ++KET + I+S+Q+P++LLEVRGRLYELL HCIP   II+ L  EL   CD  LK  + Q+AA YE+++ LG KAI+HLEAFVAKFM+++K
Sbjct:    1 MSLWVDKYRPSSLSKLDYHKEQAVQLRNLVQCGDFPHLLVFGPSGAGKKTRIMCLLRELYGAGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQELLKTVAQSQQLETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIAPIRSRCLAVRICAPSVDEICTVLFSVCKKEGLILPQELARKIAEKSGRNLRKALLMCEACRVQQYPFSADQDLPETDWEVYVKETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIIKCLLSELLNNCDGQLKCDVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYK 344
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Xenopus
Match: rfc5 (replication factor C subunit 5 [Source:NCBI gene;Acc:496525])

HSP 1 Score: 98.5969 bits (244), Expect = 1.456e-22
Identity = 73/241 (30.29%), Postives = 120/241 (49.79%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSD-VGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDN 779
            W +K++P TL +L  H+D  + IQ  ++    PHLL  G  G+GK + I    ++LY                   K  + N +V    +E+N SD  GI    I++  I S AST    +I +K FK++++ E D +T DAQ+ALRR +EK+  + R  L     +KIIPA++SRC   R    S + +   +    ++E + I     K +   S G++R+ L I ++  +     T++
Sbjct:   17 WVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLY-------------------KDREFNSMV----LELNASDDRGID---IVRGPILSFAST---RTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEMMVPRLEHVVKEECVDISPDGMKALVTLSNGDMRRSLNILQSTNMAYGKVTED 228
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Xenopus
Match: rfc5 (replication factor C subunit 5 [Source:NCBI gene;Acc:496525])

HSP 1 Score: 98.2117 bits (243), Expect = 1.475e-22
Identity = 73/242 (30.17%), Postives = 120/242 (49.59%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVI--IQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDN 779
            W +K++P TL +L  H+D  + IQ  ++    PHLL  G  G+GK + I    ++LY                   K  + N +V    +E+N SD    DR I  ++  I S AST    +I +K FK++++ E D +T DAQ+ALRR +EK+  + R  L     +KIIPA++SRC   R    S + +   +    ++E + I     K +   S G++R+ L I ++  +     T++
Sbjct:   17 WVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLY-------------------KDREFNSMV----LELNASD----DRGIDIVRGPILSFAST---RTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEMMVPRLEHVVKEECVDISPDGMKALVTLSNGDMRRSLNILQSTNMAYGKVTED 228
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Xenopus
Match: prokr1 (prokineticin receptor 1 [Source:Xenbase;Acc:XB-GENE-920239])

HSP 1 Score: 98.5969 bits (244), Expect = 1.534e-22
Identity = 65/224 (29.02%), Postives = 113/224 (50.45%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            W +K++PL LSE+  +++  +R++     G+ P+++I G  G+GK T I C+ R L G               P+ K   + L  SN        D GI    ++++ IK  A   Q  ++ +   K+I++ E D +T  AQ ALRRTME Y  + R  L   +++KII  I+SRC  +R    ++ ++   ++   +KE +       + I   ++G++RQ L
Sbjct:   33 WVEKYRPLKLSEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG---------------PTMKDAVLELNASN--------DRGID---VVRNKIKMFAQ--QKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDVVEKERVQCTDDGLEAIVFTAQGDMRQAL 228
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Xenopus
Match: prokr1 (prokineticin receptor 1 [Source:Xenbase;Acc:XB-GENE-920239])

HSP 1 Score: 98.2117 bits (243), Expect = 2.115e-22
Identity = 65/224 (29.02%), Postives = 113/224 (50.45%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            W +K++PL LSE+  +++  +R++     G+ P+++I G  G+GK T I C+ R L G               P+ K   + L  SN        D GI    ++++ IK  A   Q  ++ +   K+I++ E D +T  AQ ALRRTME Y  + R  L   +++KII  I+SRC  +R    ++ ++   ++   +KE +       + I   ++G++RQ L
Sbjct:   34 WVEKYRPLKLSEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG---------------PTMKDAVLELNASN--------DRGID---VVRNKIKMFAQ--QKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDVVEKERVQCTDDGLEAIVFTAQGDMRQAL 229
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Mouse
Match: Rfc3 (replication factor C (activator 1) 3 [Source:MGI Symbol;Acc:MGI:1916513])

HSP 1 Score: 427.943 bits (1099), Expect = 1.763e-149
Identity = 203/344 (59.01%), Postives = 273/344 (79.36%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFK 1082
            MSLW DK++P +L+ LDYHK+QA +++ LV  GDFPHLL+ G +G+GKKTRI CILRELYG GV+KLR+EHQ   TPS KKI+I+ + SNYH+EVNPSD G  DRV+IQ+++K+ A + QL++  Q++FKV+++ EVDKLT DAQHALRRTMEKY+S+CRLILC  ST+K+IP IRSRCL +RVP+PS ++I  ++ + C+KE L +P  LA+R+AE S  NLR+ LL+ EAC+VQQYPFT++Q I   DW  +++ET + I+S+Q+P++LLEVRGRLYELL HCIP   I++ L  EL   CD  LK  + Q+AA YE+++ LG KAI+HLEAFVAKFM+++K
Sbjct:    1 MSLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGIGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYK 344
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Mouse
Match: Rfc5 (replication factor C (activator 1) 5 [Source:MGI Symbol;Acc:MGI:1919401])

HSP 1 Score: 102.449 bits (254), Expect = 5.444e-24
Identity = 71/233 (30.47%), Postives = 120/233 (51.50%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSD-VGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKV 755
            W +K++P TL++L  H+D  + IQ  ++    PHLL+ G  G+GK + I    ++LY         + +EF               +  +E+N SD  GI    I++  I S AST    +I +K FK++++ E D +T DAQ+ALRR +EK+  + R  L     +KIIPA++SRC   R    + + +   +    Q+E++ I     K +   S G++R+ L I ++  +
Sbjct:   21 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY---------KDKEF--------------GSMVLELNASDDRGID---IVRGPILSFAST---RTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNM 224
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Mouse
Match: Rfc2 (replication factor C (activator 1) 2 [Source:MGI Symbol;Acc:MGI:1341868])

HSP 1 Score: 97.8265 bits (242), Expect = 2.463e-22
Identity = 65/224 (29.02%), Postives = 114/224 (50.89%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            W +K++PL L+E+  ++D  +R++     G+ P+++I G  G+GK T I C+ R L G               P+ K   + L  SN        D GI    ++++ IK  A   Q  ++ +   K+I++ E D +T  AQ ALRRTME Y  + R  L   +++KII  I+SRC  +R    ++ ++   +++  +KE +       + I   ++G++RQ L
Sbjct:   33 WVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG---------------PALKDAVLELNASN--------DRGID---VVRNKIKMFAQ--QKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQAL 228
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Mouse
Match: Rfc4 (replication factor C (activator 1) 4 [Source:MGI Symbol;Acc:MGI:2146571])

HSP 1 Score: 80.8777 bits (198), Expect = 2.622e-16
Identity = 62/232 (26.72%), Postives = 110/232 (47.41%), Query Frame = 3 
Query:   42 KYKMSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDV-GIHD-RVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            K K   W +K++P  + E+ +  +    ++  +   D P+LL  G  G+GK + I    REL+G  + +LR+                       +E+N SD  GI   R  +++  + + S  + D      FK++++ E D +T  AQ ALRRTMEK   + R  L     ++II  + SRC   R    S+K  ++ ++   +KE++ I       + + S+G+LR+ +
Sbjct:   34 KVKPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRV-----------------------LELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAI 242
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Mouse
Match: Rfc4 (replication factor C (activator 1) 4 [Source:MGI Symbol;Acc:MGI:2146571])

HSP 1 Score: 78.1814 bits (191), Expect = 4.115e-16
Identity = 53/188 (28.19%), Postives = 87/188 (46.28%), Query Frame = 3 
Query:   42 KYKMSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSD-VGIHD-RVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIR 599
            K K   W +K++P  + E+ +  +    ++  +   D P+LL  G  G+GK + I    REL+G  + +LR+                       +E+N SD  GI   R  +++  + + S  + D      FK++++ E D +T  AQ ALRRTMEK   + R  L     ++II  + SRC   R
Sbjct:   34 KVKPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRV-----------------------LELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFR 198
[Close]
BLAST of replication factor C subunit 3 vs. UniProt/SwissProt
Match: sp|Q8R323|RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus OX=10090 GN=Rfc3 PE=1 SV=1)

HSP 1 Score: 427.943 bits (1099), Expect = 1.233e-148
Identity = 203/344 (59.01%), Postives = 273/344 (79.36%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFK 1082
            MSLW DK++P +L+ LDYHK+QA +++ LV  GDFPHLL+ G +G+GKKTRI CILRELYG GV+KLR+EHQ   TPS KKI+I+ + SNYH+EVNPSD G  DRV+IQ+++K+ A + QL++  Q++FKV+++ EVDKLT DAQHALRRTMEKY+S+CRLILC  ST+K+IP IRSRCL +RVP+PS ++I  ++ + C+KE L +P  LA+R+AE S  NLR+ LL+ EAC+VQQYPFT++Q I   DW  +++ET + I+S+Q+P++LLEVRGRLYELL HCIP   I++ L  EL   CD  LK  + Q+AA YE+++ LG KAI+HLEAFVAKFM+++K
Sbjct:    1 MSLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGIGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYK 344
[Close]
BLAST of replication factor C subunit 3 vs. UniProt/SwissProt
Match: sp|Q2TBV1|RFC3_BOVIN (Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 424.091 bits (1089), Expect = 4.151e-147
Identity = 204/344 (59.30%), Postives = 271/344 (78.78%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFK 1082
            MSLW DK++P +L +LDYHK+QA +++ LV  GDFPHLL+ G +G+GKKTRI CILRELYG GV+KLR+EHQ   TPS KKI+I+ + SNYH+EVNPSD G  DRV+IQ+++K+ A + QL++  QK+FKV+++ EVDKLT DAQHALRRTMEKY+S+CRLILC  ST+K+IP IRSRCL +RVP+PS ++I  ++ + C+KE L +P  LA R+AE S  NLR+ LL+ EAC+VQQYPFT +Q I   DW  +++ET + I+S+Q+P++LLEVRGRLYELL HCIP   I++ L  EL   CD  LK  + Q+AA YE+++ LG KAI+HLEAFVAKFM+++K
Sbjct:    1 MSLWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYK 344
[Close]
BLAST of replication factor C subunit 3 vs. UniProt/SwissProt
Match: sp|P40938|RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens OX=9606 GN=RFC3 PE=1 SV=2)

HSP 1 Score: 422.935 bits (1086), Expect = 1.380e-146
Identity = 203/344 (59.01%), Postives = 270/344 (78.49%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFK 1082
            MSLW DK++P +L  LDYHK+QA +++ LV  GDFPHLL+ G +G+GKKTRI CILRELYG GV+KLR+EHQ   TPS KKI+I+ + SNYH+EVNPSD G  DRV+IQ+++K+ A + QL++  Q++FKV+++ EVDKLT DAQHALRRTMEKY+S+CRLILC  ST+K+IP IRSRCL +RVP+PS ++I  ++ + C+KE L +P  LA R+AE S  NLR+ LL+ EAC+VQQYPFT +Q I   DW  +++ET + I+S+Q+P++LLEVRGRLYELL HCIP   I++ L  EL   CD  LK  + Q+AA YE+++ LG KAI+HLEAFVAKFM+++K
Sbjct:    1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYK 344
[Close]
BLAST of replication factor C subunit 3 vs. UniProt/SwissProt
Match: sp|Q8VXX4|RFC3_ARATH (Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 8.274e-109
Identity = 166/346 (47.98%), Postives = 241/346 (69.65%), Query Frame = 3 
Query:   57 LWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEF-VTPSHKKIDINLVV--SNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKS 1085
            LW DK++P +L ++  H+D A +++ LV+  D PHLL  G +GSGKKT I  +L+++YG   +K+++E++ + V    + ID+ L    S  H+E+ PSD G  DR I+Q++IK  A    +D+  +K +KV+V++EVDKL+ +AQH+LRRTMEKY SSCRLILC  S++K+  AI+SRCL +R+ +PS++EI K++    +KESL +P+  A RIAE S  +LR+ +L  E C+VQ YPFT NQ I   DW  ++ E  + ++ EQSPKKL +VRG++YELL +CIP   I++ L  EL    D  LKL +   AA YE++M LGQKAIFH+EAFVAKFMS++K+
Sbjct:    2 LWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHELLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKN 347
[Close]
BLAST of replication factor C subunit 3 vs. UniProt/SwissProt
Match: sp|Q8X082|RFC5_NEUCR (Replication factor C subunit 5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=B14D6.460 PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 1.396e-107
Identity = 169/353 (47.88%), Postives = 238/353 (67.42%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMD 1109
            M+L  DKH+P +L  L YH + + R+++L  +GDFPHLL+ G +G+GKKTRI   L+ELYG GV+K++++ + F T S++K++ N+V S YH+E+ PSDVG +DRV++QDL+K  A T Q+D   ++ FKV+V++E D LT DAQ ALRRTMEKY  + RLIL A ST  II  IRSRCL +RV +P+ KEI  ++ S+ +KE   I + L +RIAE S  NLR+ LL+ EA   Q    TD+  I  PDW   I +    I+ E +P ++L+VR +LY+LL HCIP + I++ LT +L    D  LK  +   +A YE+++  G K IFHLEAFVAKFM +F+ +    SMD
Sbjct:    1 MALIVDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGVEKIKIDARVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTDSTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIILKTLTFKLIPLIDDALKADVIYWSAFYEHRIRTGTKVIFHLEAFVAKFMRIFEMYL--MSMD 351
[Close]
BLAST of replication factor C subunit 3 vs. TrEMBL
Match: R7U5X9 (AAA domain-containing protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_181059 PE=4 SV=1)

HSP 1 Score: 455.677 bits (1171), Expect = 4.292e-157
Identity = 218/354 (61.58%), Postives = 282/354 (79.66%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMDE 1112
            MSLW DK++P  L +LDYHK+QA  ++ LV  GDFPHLL+ G +G+GKKTRI CILRELYG GV+K R+EHQ FVTPS KK++I+ V SNYHIEVNPSDVG+ DRV+IQ+++KS A T QL++ QQ+EFKV+V+ EVD+LT DAQHALRRTMEKY+++CRLILC  ST+K+IPAIRSRC  +RVP+PSE +I +++   C+KE L +P  LAK+IA  S  NLR+ +L+ EAC+VQQYPF+ NQ + LPDW  +++ET ++II +QSPK+LLEVRGRLYELL+HCIP   I++ L  EL + CD  +K  + QIAA YE+++ LGQKAI+H+EAFVAKFMSVFK HF    M +
Sbjct:    1 MSLWVDKYRPTALGKLDYHKEQAGHLKKLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGIGVEKTRIEHQTFVTPSKKKLEISTVASNYHIEVNPSDVGVQDRVVIQEVVKSMAQTNQLETSQQREFKVLVLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIPAIRSRCFAVRVPAPSEDQICQVLQLVCKKEGLNLPSDLAKKIATQSNRNLRRAILMCEACRVQQYPFSSNQDVTLPDWELYLRETANMIIQQQSPKRLLEVRGRLYELLSHCIPSDVIMKGLLQELVSNCDGEMKREVTQIAAYYEHRLQLGQKAIYHIEAFVAKFMSVFK-HFQEGMMQD 353
[Close]
BLAST of replication factor C subunit 3 vs. TrEMBL
Match: A0A1S3KC08 (replication factor C subunit 3 OS=Lingula unguis OX=7574 GN=LOC106180511 PE=4 SV=1)

HSP 1 Score: 446.432 bits (1147), Expect = 1.944e-153
Identity = 213/353 (60.34%), Postives = 278/353 (78.75%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMD 1109
            MSLW DKH+P TL +LDYHK QA  ++ LV +GDFPHLLI G +G+GKKTRI C+LRELYG  V+KLR+EH  F TPS KK++I+ V SNYHIEVNPSDVG +DRV+IQ+L+K+ A + QL++  Q++FKV+V+ EVD+L+ DAQHALRRTMEKY+++CRLILC  ST+K+IPAIRSRCL IRVP+P+ +E+ +I+ STC+KE L +P  LA++IAE S  NLR+ LL+ EACKVQQYPF+ +Q +V  DW  F++ET ++I+ +Q+PK+LLE+RGRLYELL HCIP   II+ L  EL   CD  LK  + Q+AA YE+++ LGQKAIFHLEAFVAKFM+++K        D
Sbjct:    1 MSLWVDKHRPTTLGKLDYHKSQAVLLKKLVQDGDFPHLLIYGPSGAGKKTRIMCLLRELYGSSVEKLRIEHHSFTTPSKKKLEISTVASNYHIEVNPSDVGHNDRVVIQELLKTVAQSHQLETSTQRDFKVVVLTEVDRLSKDAQHALRRTMEKYMATCRLILCCNSTSKVIPAIRSRCLGIRVPAPTVEEVVQILQSTCKKEGLTLPSELARKIAEKSNRNLRKALLMCEACKVQQYPFSADQPVVEADWEIFLRETANLIVQQQTPKRLLEIRGRLYELLTHCIPPDVIIKGLVKELVGSCDGQLKADVTQVAAYYEHRLQLGQKAIFHLEAFVAKFMAIYKQFLEEGMAD 353
[Close]
BLAST of replication factor C subunit 3 vs. TrEMBL
Match: T2MFG8 (Replication factor C subunit 3 OS=Hydra vulgaris OX=6087 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 442.965 bits (1138), Expect = 4.725e-152
Identity = 212/353 (60.06%), Postives = 276/353 (78.19%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMD 1109
            MSLW DKH+P  LS+L YH +QA R++ LV N DFPHLLI G +G+GKKTRI CILRELYG GV+K++LE Q ++TPS KKI+I+ + SNYHIE+NPSD GI+DRV+IQ+LIK++A T QLDS  QK FKVI++ EVD+LT DAQHALRRTMEKY+++CRLILC  ST+K+I AI+SRCL IRVPSPS +E+ + + S C+KE L +P  LA RIA+ ++GN+R+ LL+ EAC+VQQYPFT +QSI   DW  ++K+T ++II +Q+P++L+E+R R+YELL HCIP   II+ L  EL   CD  LK  + Q+AA YE+++ LG KAI+HLEAFVAKFMSV+K  F     D
Sbjct:    1 MSLWIDKHRPTNLSKLTYHLEQAGRLKKLVNNADFPHLLIYGPSGAGKKTRIMCILRELYGAGVEKVKLEQQSYLTPSKKKIEISSISSNYHIEINPSDAGIYDRVVIQELIKTTAQTHQLDSTSQKSFKVILLMEVDRLTKDAQHALRRTMEKYVATCRLILCCNSTSKVISAIQSRCLGIRVPSPSTEEVVQTLNSVCKKEGLNLPSELANRIAQKAEGNMRRALLMCEACRVQQYPFTADQSIQEADWETYLKQTANMIIEQQTPQRLMEIRTRIYELLTHCIPAEVIIKGLLRELVKNCDGSLKCEIVQLAAHYEHRLQLGTKAIYHLEAFVAKFMSVYKRFFEEGMAD 353
[Close]
BLAST of replication factor C subunit 3 vs. TrEMBL
Match: T1J635 (AAA domain-containing protein OS=Strigamia maritima OX=126957 PE=4 SV=1)

HSP 1 Score: 440.654 bits (1132), Expect = 3.726e-151
Identity = 211/353 (59.77%), Postives = 271/353 (76.77%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMD 1109
            MSLW DK++P +LS+LDYHK+QA  ++ LV  GDFPHLLI G +G+GKKTRI CILRE+YG GV+KLR+E   F TPS KK++IN + SNYH EVNP DVGI+DRV+IQ+L+K+ A T QL++  QKEFKVIV+ EVD+LT DAQHALRRTMEKY+++CRLILC  ST+K+IPAIRSRCL IRV +P+  EI  ++   C+KE+L +P  LA+RIAE S+ NLR+ LL+ EA KVQQYPF  NQ +  PDW  F+++T ++II EQSP++L EVRGRLYEL+ HCIP   I + L  EL + CD  LK  + QIAA YE+++ LG K I+HLEAFV KFM+++K     + MD
Sbjct:    1 MSLWVDKYRPTSLSKLDYHKEQATHLKKLVQGGDFPHLLIYGPSGAGKKTRIMCILREIYGLGVEKLRIEQMTFTTPSKKKLEINTIASNYHFEVNPCDVGIYDRVVIQELLKNVAQTHQLETSTQKEFKVIVLSEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIPAIRSRCLGIRVAAPTVDEIIHMLQYVCKKENLTLPVDLARRIAELSERNLRKALLMCEAAKVQQYPFQPNQDLPPPDWELFLRDTANMIIQEQSPRRLFEVRGRLYELITHCIPSDIIFKGLLKELVSNCDGQLKAEITQIAAFYEHRLQLGSKTIYHLEAFVVKFMAIYKGFLEESVMD 353
[Close]
BLAST of replication factor C subunit 3 vs. TrEMBL
Match: A0A0R3SHN1 (AAA domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS4444 PE=4 SV=1)

HSP 1 Score: 438.728 bits (1127), Expect = 2.241e-150
Identity = 208/344 (60.47%), Postives = 267/344 (77.62%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFK 1082
            MSLW DKH+P +L  LDYHK +A  ++ +V +GDFPHLL  G  G+GKKTRI C+LRELYG GVDKLR+EH  F TPS KK+D++ V SN+H+EVNPSDVGI+DR+++Q+LIK+ AST QLD   Q+EFKV+V+HEVD+L+ DAQH+LRRTMEKY+ +CR+ILC ES +KIIPA RSRCL IR+ +P+  EI KI+++  + E LI+P  LA+RIA AS  NLR+ LL+AE  + Q YPF+ +QSI LPDW NFI ET S I+ EQSPK+++EVR RLYELLAHCIP   I R L D L + CD  L+  L  +AA +E++M+LGQK IFHLEAFV  FM+++K
Sbjct:    1 MSLWVDKHRPTSLESLDYHKKEAETLRKIVASGDFPHLLFYGPPGAGKKTRISCLLRELYGPGVDKLRIEHHSFTTPSKKKVDLSTVSSNFHLEVNPSDVGIYDRIVVQELIKNMASTAQLDVTNQREFKVVVIHEVDRLSKDAQHSLRRTMEKYMKTCRIILCTESLSKIIPATRSRCLPIRIAAPTVDEISKILVNVAKMEGLIMPIELAERIANASDRNLRRSLLLAEVARAQHYPFSHDQSIPLPDWQNFISETASSILGEQSPKRVMEVRSRLYELLAHCIPPDVIFRGLLDNLLSSCDSTLRYDLVSLAATHEHRMHLGQKPIFHLEAFVISFMAIYK 344
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Cavefish
Match: rfc3 (replication factor C subunit 3 [Source:NCBI gene;Acc:103031920])

HSP 1 Score: 423.32 bits (1087), Expect = 9.072e-148
Identity = 205/344 (59.59%), Postives = 270/344 (78.49%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFK 1082
            MSLW DK++P +L++LDYHKDQAN+++ LV  GDFPHLL+ G +G+GKKTRI C+LRELYG GV+KLR+EHQ  V PS KKI+IN + SNYH+EVNPSD G  DRV+IQ+LIK+ A + Q+ S  Q+EFKV+++ EVD+LT DAQHALRRTMEKY+S+CRLILC  ST+K+I  IRSRCL +RVP PS +E+  ++   C+KE L++P  LAK IAE S  NLR+ LL+ EAC+VQQYPF+ +Q I   DW  +++ET + I+S+QSP++LLEVR RLYELL HCIP   I++ L  EL + CD  LK  + Q+AA YE+++ +G KAI+HLEAFVAKFM+++K
Sbjct:    1 MSLWVDKYRPTSLAKLDYHKDQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAGVEKLRIEHQSIVAPSKKKIEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQIQSSTQREFKVVLLTEVDRLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVISPIRSRCLAVRVPLPSIEEVCSVLAGVCRKEGLLLPAELAKHIAEKSGRNLRKALLMCEACRVQQYPFSADQDIPETDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCIPPEIIMKGLVSELLSNCDGHLKAEVAQMAAYYEHRLQMGNKAIYHLEAFVAKFMAIYK 344
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Cavefish
Match: rfc3 (replication factor C subunit 3 [Source:NCBI gene;Acc:103031920])

HSP 1 Score: 372.474 bits (955), Expect = 3.573e-128
Identity = 191/344 (55.52%), Postives = 246/344 (71.51%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFK 1082
            MSLW DK++P +L++LDYHKDQAN+++ LV  GDFPHLL+ G +G+GKKTRI C+LRELYG GV+KLR+EHQ  V PS KKI+IN + SNYH+EVNPSD G  DRV+IQ+LIK+ A + Q+ S  Q+EFKV+++ EVD+LT DAQHALRRTMEKY+S+CRLILC  ST+K+I  IRSRCL +RVP PS +E+  ++   C+KE L++P  LAK IAE S  NLR+ LL+ EAC+VQQ                                 LLEVR RLYELL HCIP   I++ L  EL + CD  LK  + Q+AA YE+++ +G KAI+HLEAFVAKFM+++K
Sbjct:    1 MSLWVDKYRPTSLAKLDYHKDQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAGVEKLRIEHQSIVAPSKKKIEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQIQSSTQREFKVVLLTEVDRLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVISPIRSRCLAVRVPLPSIEEVCSVLAGVCRKEGLLLPAELAKHIAEKSGRNLRKALLMCEACRVQQ---------------------------------LLEVRARLYELLTHCIPPEIIMKGLVSELLSNCDGHLKAEVAQMAAYYEHRLQMGNKAIYHLEAFVAKFMAIYK 311
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Cavefish
Match: rfc5 (replication factor C subunit 5 [Source:NCBI gene;Acc:103039707])

HSP 1 Score: 101.293 bits (251), Expect = 9.932e-24
Identity = 75/231 (32.47%), Postives = 120/231 (51.95%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVI--IQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEA 746
            W +K++P TL +L  H+D  + IQ  ++    PHLL  G  G+GK + I    ++LY         + +EF          N +V    +E+N SD    DR I  ++  I S AST    +I +K FK++++ E D +T DAQ+ALRR +EK+  + R  L     +KIIPA++SRC   R    S+ ++   +    Q+E++ I     K I   S G++R+ L I ++
Sbjct:   16 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACAKQLY---------KDKEF----------NSMV----LELNASD----DRGIDVVRGPILSFAST---RTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQENIDISPDGMKAIVTLSTGDMRRSLNILQS 216
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Cavefish
Match: rfc2 (replication factor C (activator 1) 2 [Source:ZFIN;Acc:ZDB-GENE-050306-29])

HSP 1 Score: 97.8265 bits (242), Expect = 3.038e-22
Identity = 65/224 (29.02%), Postives = 114/224 (50.89%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            W +K++P+ L+E+  +++  +R++     G+ P+++I G  G+GK T I C+ R L G               P+ K   + L  SN        D GI    ++++ IK  A   Q  ++ +   K+I++ E D +T  AQ ALRRTME Y  + R  L   +++KII  I+SRC  +R     +++I   ++   +KE+L       + I   ++G++RQ L
Sbjct:   74 WVEKYRPMKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG---------------PAMKDAVLELNASN--------DRGID---VVRNKIKMFAQ--QKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLMEVVEKENLHTTNDGLEAIIFTAQGDMRQAL 269
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Cavefish
Match: rfc2 (replication factor C (activator 1) 2 [Source:ZFIN;Acc:ZDB-GENE-050306-29])

HSP 1 Score: 98.2117 bits (243), Expect = 3.071e-22
Identity = 65/224 (29.02%), Postives = 114/224 (50.89%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            W +K++P+ L+E+  +++  +R++     G+ P+++I G  G+GK T I C+ R L G               P+ K   + L  SN        D GI    ++++ IK  A   Q  ++ +   K+I++ E D +T  AQ ALRRTME Y  + R  L   +++KII  I+SRC  +R     +++I   ++   +KE+L       + I   ++G++RQ L
Sbjct:   74 WVEKYRPMKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG---------------PAMKDAVLELNASN--------DRGID---VVRNKIKMFAQ--QKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLMEVVEKENLHTTNDGLEAIIFTAQGDMRQAL 269
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Sea Lamprey
Match: rfc3 (replication factor C (activator 1) 3 [Source:ZFIN;Acc:ZDB-GENE-020809-3])

HSP 1 Score: 419.468 bits (1077), Expect = 6.468e-147
Identity = 202/353 (57.22%), Postives = 272/353 (77.05%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMD 1109
            MSLW DK++P +LS++D+HK+QA +++ LV  GDFPHLL+ G +G+GKKTRI C+LRELYG GV+KLR+EHQ   TPS KKI+I+ + SNYHIEV PSD G  DRV++Q+LIK+ A + QL+S  Q++FKV+++ EVD+LT DAQHALRRTMEKY+S+CRLIL   ST+K+I  IRSRCL +RVP+P+  E+ +++   C+KE L +P  LA+RIAE S  NLR+ LL+ EACKVQQYPF+  Q I   DW  +++ET + II++QSP++LLEVRGR+YELL HCIP   I++ L  EL + CD  LK  + Q+AA YE+++ LG KAI+HLEAFVA+FM+++K  F    MD
Sbjct:    1 MSLWVDKYRPTSLSKVDFHKEQAIQLKNLVQGGDFPHLLVYGPSGAGKKTRIMCLLRELYGAGVEKLRIEHQTVTTPSKKKIEISTIASNYHIEVTPSDAGNSDRVVVQELIKTVAQSQQLESGTQRDFKVVLLSEVDRLTKDAQHALRRTMEKYMSTCRLILMCNSTSKVIAPIRSRCLGLRVPAPTVDEVCQVLAIVCKKEGLSLPPELARRIAEKSNRNLRKALLMCEACKVQQYPFSAEQEIPETDWEVYLRETATAIINQQSPQRLLEVRGRIYELLTHCIPPEVIVKGLLTELLSNCDGQLKADVTQMAAYYEHRLQLGSKAIYHLEAFVARFMALYK-RFMEDGMD 352
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Sea Lamprey
Match: rfc5 (replication factor C (activator 1) 5 [Source:ZFIN;Acc:ZDB-GENE-040907-1])

HSP 1 Score: 91.2781 bits (225), Expect = 7.717e-21
Identity = 70/232 (30.17%), Postives = 108/232 (46.55%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVI--IQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRR------TMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            W +K++P  L EL  HKD    IQ  ++    PHLL  G  G+GK + I    R+LYG+       E    V                 +E+N SD    DR I  ++  I S AST    +I +K +K++++ E D +T DAQ+ALRR       MEK+  + R  L     ++IIPA++SRC   R    S   +   ++    +E + +       +   S G++R+ L
Sbjct:   11 WVEKYRPRVLDELISHKDILTTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYGEK------EAASMV-----------------LELNASD----DRGIDVVRGPILSFAST---RTIFKKGYKLVILDEADAMTQDAQNALRRGFHPPAVMEKFTENTRFCLICNYLSRIIPALQSRCTRFRFGPLSSDLMVPRLLHVIAEEQVDVTDDGMNALVTLSNGDMRRAL 212
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008618.1 (pep scaffold:Pmarinus_7.0:GL477502:54132:62470:-1 gene:ENSPMAG00000007794.1 transcript:ENSPMAT00000008618.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 88.5817 bits (218), Expect = 7.974e-20
Identity = 66/227 (29.07%), Postives = 110/227 (48.46%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLIC---GAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            W +K++PL L E+  +++  +R++     G+ P+++I    G  G+GK T I C+ R L G  V    LE               L  SN        D GI    ++++ IK  A   Q  ++ +   K+I++ E D +T  AQ ALRRTME Y  S R  L   +++KII  I+SRC  +R    ++ ++   ++  C  E +       + I   ++G++RQ L
Sbjct:   50 WVEKYRPLKLKEIVGNEETVSRLEVFAREGNVPNIIIAECQGPPGTGKTTSILCLARALLGPAVRDAVLE---------------LNASN--------DRGID---VVRNKIKMFAQ--QKVTLPRGRHKIIILDEADSMTDGAQQALRRTMEIYSKSTRFALACNASDKIIEPIQSRCAVLRYSRLTDSQVLSRLLEVCDHECVQRTDDGLEAIIFTAQGDMRQAL 248
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Sea Lamprey
Match: rfc4 (replication factor C (activator 1) 4 [Source:ZFIN;Acc:ZDB-GENE-040824-3])

HSP 1 Score: 68.1662 bits (165), Expect = 3.735e-13
Identity = 54/197 (27.41%), Postives = 92/197 (46.70%), Query Frame = 3 
Query:  153 FPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSD-VGIHD-RVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLI 737
             P+LL  G  G+GK + I    R+L+G  +   R+                       +E+N SD  GI   R  +++  + +AS+ + D      FK++V+ E D +T  AQ ALRRTME+   + R  L     ++II  + SRC   R    S+   E+ +   C +E L I +     + + ++G+LR+ + +
Sbjct:    1 LPNLLFYGPPGTGKTSAILAAARDLFGPELYAQRV-----------------------LELNASDERGIQVVRHKVKNFAQLTASSTRKDGSPCPPFKIVVLDEADSMTSAAQAALRRTMERETKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDAAQEQRVRHVCDQEGLKIEQEALTELVKVAEGDLRRAITM 174
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Yeast
Match: RFC5 (Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon [Source:SGD;Acc:S000000291])

HSP 1 Score: 251.521 bits (641), Expect = 2.841e-81
Identity = 142/350 (40.57%), Postives = 225/350 (64.29%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNG-DFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKE-----FKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLII-PRALAKRIAEASKGNLRQGLLIAEACKV-QQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPL--KLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFM 1070
            MSLW DK++P +L+ L ++++  N +++L     D PHLL+ G  G+GKKTR   +L  ++G GV +L+++ ++FVT S++K+++N+V S YH+E+ PSD+G +DR++IQ+L+K  A   Q+D    K+     +K ++++E + LT DAQ ALRRTMEKY  + RLI+  +S + II  I+SRCL IR P+PS+ EI  I+      E + +  + + KRIA+AS GNLR  LL+ E+  +  +     +  I+ PDW+  I +    I+ E+S   L+E R  LY+LLAHCIP + I++ELT  L     L    K ++ + ++ ++ +++LG KAIFHLE F+AK M
Sbjct:    1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 350
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Yeast
Match: RFC3 (Subunit of heteropentameric Replication factor C (RF-C); which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000005234])

HSP 1 Score: 103.99 bits (258), Expect = 1.807e-25
Identity = 74/234 (31.62%), Postives = 116/234 (49.57%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVI--IQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKV 755
            W +K++P TL E+    +    ++  V  G  PHLL  G  G+GK + I  + RE+YG+                          SN  +E+N SD    DR I  +++ IK  AST Q+ S   K FK+I++ E D +T  AQ+ALRR +E+Y  + R  + A   +K+ PA+ SRC   R     ++ IE+ I +    E L +     K + E S G++R+ L + ++CK 
Sbjct:   15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY------------------------SNMVLELNASD----DRGIDVVRNQIKDFASTRQIFS---KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKA 217
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Yeast
Match: RFC4 (Subunit of heteropentameric Replication factor C (RF-C); which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000005454])

HSP 1 Score: 96.2857 bits (238), Expect = 6.903e-23
Identity = 57/187 (30.48%), Postives = 94/187 (50.27%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEF-------KVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIR 599
            W +K++P  LS++  +K+  +R+Q +  +G+ PH++I G  G GK T +HC+  EL G+                          ++  +E+N SD    DR I  D++++     Q+    QK+        K++++ E D +T  AQ ALRRTME Y +S R       +NKII  ++SRC  +R
Sbjct:   11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS------------------------YADGVLELNASD----DRGI--DVVRN-----QIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILR 162
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Yeast
Match: RFC2 (Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon [Source:SGD;Acc:S000003829])

HSP 1 Score: 92.4337 bits (228), Expect = 2.461e-21
Identity = 67/244 (27.46%), Postives = 112/244 (45.90%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDV-GIHDRVIIQDLIKSSA-------STLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL-LIAEACKVQQY 764
            W +K++P  L E+         ++  + + + PH+L  G  G+GK + I  + +ELYG  + K R+                       +E+N SD  GI    I+++ +K+ A       S   L++     +K+I++ E D +T DAQ ALRRTME Y    R  L      +II  + SRC   R  +         +    ++E++     + +RI + S G+LR+G+ L+  A K  QY
Sbjct:   27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRI-----------------------LELNASDERGIS---IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQY 244
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Nematostella
Match: EDO40823 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S695])

HSP 1 Score: 412.535 bits (1059), Expect = 5.195e-144
Identity = 200/353 (56.66%), Postives = 266/353 (75.35%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMD 1109
            MSLW DK++P +L +LDYHKD A  ++ LV +GDFPHLL+ G +G+GKKTRI CILRELYG GV+KL++EH  F TPS+KK++I+ + S +H+EVN SDVGI+DRV++Q+L+K++A    L+    ++FKV+V+ EVD+LT DAQHALRRTMEKY S+CRLILC  ST+K+IPAIRSRCL +R+P+PS +EI +I+   C+KE L IP  L++RIAE S  NLR+ LL+ EACKVQQYPFT +Q +   DW  +++ET   I+  Q+P++L E+RGRLYELL HCIP   II+ L  EL   CD  LK  +  +AA YE+++ LG KAI+HLEAFVAKFMS++K        D
Sbjct:    1 MSLWVDKYRPTSLGKLDYHKDLAAHLKKLVHSGDFPHLLVYGPSGAGKKTRITCILRELYGSGVEKLKIEHHSFTTPSNKKVEISTIGSIFHLEVNASDVGIYDRVVVQELLKNTAQAHSLELSAHRDFKVVVLTEVDRLTKDAQHALRRTMEKYTSTCRLILCCNSTSKVIPAIRSRCLGVRIPAPSVEEICQILQFVCKKEGLTIPSELSRRIAEKSGRNLRKALLMCEACKVQQYPFTPDQPVQEADWEMYLRETAQQIVQTQTPRRLYEIRGRLYELLTHCIPADIIIKGLLKELLTNCDGTLKAEVTNLAAFYEHRILLGSKAIYHLEAFVAKFMSIYKRFLEEGMAD 353
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Nematostella
Match: EDO41130 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S523])

HSP 1 Score: 93.9745 bits (232), Expect = 1.200e-21
Identity = 96/358 (26.82%), Postives = 157/358 (43.85%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSD-VGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEA---------------CKVQQYPFTDNQSIVLPDWV---NFIKETVSIIISEQSPKKLLEVRG-RLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQI--AAQYEYQMNLGQKAIFHLEAFVAKF 1067
            W +K++P  L +L  H D  N IQ  +     PHLL  G  G+GK + I  + ++LY           ++F               +  +E+N SD  GI    I++  I S AST    +I +  FK++++ E D +T DAQ+ALRR MEK+  + R  L      KIIPA++SRC   R    S  ++   +    + E + +     K +   ++G++R+ L I ++               C  Q  P TD  +IV  DW+   +F     +I+       KL  ++G  L ++L           E T       D P K+ ++ +   A+ EY++  G      L + +A F
Sbjct:   13 WVEKYRPKCLDDLISHTDIINTIQRFINEERLPHLLFYGPPGTGKTSTILAVAKQLY---------PDKQF--------------GSMVLELNASDDRGIG---IVRGDILSFAST---RTIFKSGFKLVILDEADAMTQDAQNALRRVMEKFTENTRFCLICNYLTKIIPALQSRCTRFRFGPLSVDQMLPRLEHVIESERVNVTDDGRKSLLRLAQGDMRKVLNILQSTSMAYSVVNEDHVYLCTGQPQP-TDIGNIV--DWMLNKDFTTAYTNIL-------KLKTLKGLALQDIL-----------EETHSYVHRVDFPAKIRIHLLDKMAEVEYRLASGTSEKIQLGSMIAAF 320
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Nematostella
Match: EDO39385 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SA25])

HSP 1 Score: 93.2041 bits (230), Expect = 6.062e-21
Identity = 64/224 (28.57%), Postives = 111/224 (49.55%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            W +K++P  L E+  +++  +R++     G+ P+++I G  G+GK T I C+ R L G  +    LE               L  SN        D GI    ++++ IK  A   Q  ++ +   K+I++ E D +T  AQ ALRRTME Y  + R  L   +++KII AI+SRC  +R    ++ ++   ++  C KE +       + I   ++G++RQ +
Sbjct:   55 WVEKYRPTKLHEIVGNEETVSRLEVFAQQGNVPNIIIAGPPGTGKTTSILCLARALLGVSLKDAVLE---------------LNASN--------DRGID---VVRNKIKMFAQ--QKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNTSDKIIEAIQSRCAILRYTRLTDAQVLTRLLEICDKEQVPKVDDGLEAIIFTAEGDMRQAI 250
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Nematostella
Match: EDO40950 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S5R5])

HSP 1 Score: 91.2781 bits (225), Expect = 1.804e-20
Identity = 83/321 (25.86%), Postives = 143/321 (44.55%), Query Frame = 3 
Query:   42 KYKMSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDV-GIHDRVIIQDLIKS----SASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWV--------NFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDL 965
            K K S W +K++P  + ++   ++    ++  +   D P+LL  G  G+GK + I  + RELYG  + K R+                       +E+N SD  GI    +I+D +K+    SAS  + D      FK++++ E D +TP AQ ALRRTMEK   + R  L     ++II  + SRC   R    S + +E+ +   C KE +         + + S+G++R+ +   ++     +    +  IV  D +        N IK       S+   K    + G + E++A     S +I ++ D++    DL
Sbjct:   27 KQKSSPWVEKYRPKCVDDVAQQEEVVMVLKKSLEGADLPNLLFYGPPGTGKTSTILAVARELYGHEMLKQRV-----------------------LELNASDERGIQ---VIRDKVKTFSQLSASASRPDGKPCPPFKLVILDEADSMTPSAQAALRRTMEKQTKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSSEILERRLKEICVKEEVNCEDKAIDEVIKISEGDMRKAITFLQSA----HRLKGDSGIVAEDIIEIAGAIPDNLIKSLFDASRSDSYQK----LEGVVKEIIAEGHAASQLIGQVHDQIVQMEDL 313
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Medaka
Match: rfc3 (replication factor C subunit 3 [Source:NCBI gene;Acc:101166407])

HSP 1 Score: 412.149 bits (1058), Expect = 2.668e-143
Identity = 199/344 (57.85%), Postives = 267/344 (77.62%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFK 1082
            MSLW DK++P +L +LDYHK+QA +++ LV  GDFPHLL+ G +G+GKKTRI C+LRELYG GV+KLR+EH   V PS KKI+IN + SNYH+EVNPSD G  DRV+IQ+LIK+ A + Q+ S  Q+EFKV+++ EVD+LT DAQHALRRTMEKY+S+CRLILC+ ST+K+I  IRSRCL +RVP PS +E+  ++ S C+KE L +P  LAK+I+E S  NLR+ LL+ EAC+VQQYPF+ +Q +   DW  +++ET + I+S+Q+P++LLEVR RLYELL HCIP   I++ L  EL + CD  LK  +  +AA YE+++ LG KAI+HLEAF AKFM+++K
Sbjct:    1 MSLWVDKYRPTSLGKLDYHKEQATQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAGVEKLRIEHHTIVAPSKKKIEINTIASNYHLEVNPSDAGNQDRVVIQELIKTVAQSQQIQSSTQREFKVVILTEVDRLTKDAQHALRRTMEKYMSTCRLILCSTSTSKVIGPIRSRCLAVRVPLPSTEEVCSVLTSVCKKEGLNLPPELAKQISEKSGRNLRKALLMCEACRVQQYPFSADQEVPETDWEVYLRETANAIVSQQNPQRLLEVRARLYELLTHCIPPEIIMKGLVKELLSNCDGQLKAEVAHMAAYYEHRLQLGSKAIYHLEAFTAKFMAIYK 344
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Medaka
Match: rfc5 (replication factor C subunit 5 [Source:NCBI gene;Acc:101164811])

HSP 1 Score: 102.449 bits (254), Expect = 4.377e-24
Identity = 75/242 (30.99%), Postives = 121/242 (50.00%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVI--IQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDN 779
            W +K++P  L +L  H+D  + IQ  V     PHLL+ G  G+GK + I    R+LY         + +EF              ++  +E+N SD    DR I  ++  I S AST    +I +K FK++++ E D +T DAQ+ALRR +EK+  + R  L     +KIIPA++SRC   R    S  ++   +    Q+ES+ I     K I   S G++R+ L + ++  +     T++
Sbjct:   16 WVEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPPGTGKTSTILACARQLY---------KDKEF--------------NSMVLELNASD----DRGIDVVRGPILSFAST---RTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSADQMIPRLRHVIQEESIDITEDGMKAIVTLSSGDMRRSLNVLQSTSMAYGKVTED 227
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Medaka
Match: rfc5 (replication factor C subunit 5 [Source:NCBI gene;Acc:101164811])

HSP 1 Score: 97.0561 bits (240), Expect = 2.554e-22
Identity = 74/240 (30.83%), Postives = 120/240 (50.00%), Query Frame = 3 
Query:   66 DKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVI--IQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDN 779
            +K++P  L +L  H+D  + IQ  V     PHLL+ G  G+GK + I    R+LY         + +EF              ++  +E+N SD    DR I  ++  I S AST    +I +K FK++++ E D +T DAQ+ALRR +EK+  + R  L     +KIIPA++SRC   R    S  ++   +    Q+ES+ I     K I   S G++R+ L + ++  +     T++
Sbjct:    3 EKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPPGTGKTSTILACARQLY---------KDKEF--------------NSMVLELNASD----DRGIDVVRGPILSFAST---RTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSADQMIPRLRHVIQEESIDITEDGMKAIVTLSSGDMRRSLNVLQSTSMAYGKVTED 212
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Medaka
Match: rfc2 (replication factor C subunit 2 [Source:NCBI gene;Acc:101163395])

HSP 1 Score: 94.7449 bits (234), Expect = 2.785e-21
Identity = 65/224 (29.02%), Postives = 111/224 (49.55%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            W +K++PL L+E+  +++  +R++     G+ P+++I G  G+GK T I C+ R L G  +    LE               L  SN        D GI    ++++ IK  A   Q  ++ +   K+I++ E D +T  AQ ALRR ME Y  + R  L   +++KII  I+SRC  +R    ++ +I   +    +KE L +     + +   S+G++RQ L
Sbjct:   39 WVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGSAMKDAVLE---------------LNASN--------DRGID---VVRNKIKMFAQ--QKVTLPKGRHKIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYAKLTDGQILSRLQEVIEKERLSVSDDGLEAVIFTSQGDMRQAL 234
[Close]
BLAST of replication factor C subunit 3 vs. Ensembl Medaka
Match: rfc4 (replication factor C subunit 4 [Source:NCBI gene;Acc:101172149])

HSP 1 Score: 86.2705 bits (212), Expect = 2.065e-18
Identity = 64/235 (27.23%), Postives = 113/235 (48.09%), Query Frame = 3 
Query:   42 KYKMSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSD-VGIHDRVIIQDLIKSSA----STLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            K K   W +K++P  + E+ + ++    ++  +   D P+LL  G  G+GK + I    RELYG  + + R+                       +E+N SD  GI    ++++ +K+ A    +  + D      FK+I++ E D +T  AQ ALRRTMEK   + R  L     ++II  + SRC   R    + +  E+ ++  C+KE+L   R   + + + S+G+LR+ +
Sbjct:   27 KPKTVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRV-----------------------LELNASDERGIQ---VVREKVKTFAQLTVAGTRPDGKLCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANRIQEERLLEICEKENLKYTRESIEALVQVSEGDLRKAI 235
[Close]
BLAST of replication factor C subunit 3 vs. Planmine SMEST
Match: SMESG000020661.1 (SMESG000020661.1)

HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0
Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMDESF 1118
            MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVPSPSEKEIEKIIISTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMDESF
Sbjct:    1 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVPSPSEKEIEKIIISTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMDESF 356
[Close]
BLAST of replication factor C subunit 3 vs. Planmine SMEST
Match: SMESG000020661.1 (SMESG000020661.1)

HSP 1 Score: 598.201 bits (1541), Expect = 0.000e+0
Identity = 314/356 (88.20%), Postives = 314/356 (88.20%), Query Frame = 3 
Query:   51 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMDESF 1118
            MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVPSPSEKEIEKIIISTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDW                                          ELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMDESF
Sbjct:    1 MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVPSPSEKEIEKIIISTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDW------------------------------------------ELTDELAAFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVASMDESF 314
[Close]
BLAST of replication factor C subunit 3 vs. Planmine SMEST
Match: SMESG000077027.1 (SMESG000077027.1)

HSP 1 Score: 462.225 bits (1188), Expect = 3.097e-162
Identity = 240/241 (99.59%), Postives = 240/241 (99.59%), Query Frame = 3 
Query:  138 VTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKK 860
            VTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVPSPSEKEIEKIIISTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPK 
Sbjct:   83 VTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVPSPSEKEIEKIIISTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKETVSIIISEQSPKN 323
[Close]
BLAST of replication factor C subunit 3 vs. Planmine SMEST
Match: SMESG000041132.1 (SMESG000041132.1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.250e-21
Identity = 66/224 (29.46%), Postives = 111/224 (49.55%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDVGIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGL 731
            W +K++PL LS++  ++    R++     G+ P+L+I G  GSGK T I C+ R + G+               ++K   + L  SN        D GI    ++++ IKS A      ++     K+I++ E D +T  AQ ALRRTME Y ++ R       ++KII  I+SRC  +R    S+ EI   ++   + ES+I      + I   ++G++RQ +
Sbjct:   14 WLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAMLGE---------------TYKNAVLELNASN--------DRGIE---VVRNKIKSFARNKV--NLPDGMHKIIILDEGDSMTEGAQQALRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAI 209
[Close]
BLAST of replication factor C subunit 3 vs. Planmine SMEST
Match: SMESG000059207.1 (SMESG000059207.1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.047e-19
Identity = 69/259 (26.64%), Postives = 124/259 (47.88%), Query Frame = 3 
Query:   60 WADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKTRIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDV-GIHD-RVIIQDLIKSSASTLQLDSIQQK---EFKVIVMHEVDKLTPDAQHALRRTMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVXXXXXXXXXXXXXXTCQKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPDWVNFIKE 821
            W +K++P T+ ++ +  +    ++  ++  DFP+ L  G  G+GK + I    ++L+G       L++++ V                 +E+N SD  GI   R  ++   ++S S    +   +K    FK+I++ E D +T  AQ ALRRTME    + R  L     +KII  I SRC   R  S         +++ C  E++ I +A+  ++ E S+G+LRQ + +     +Q+   T  ++ +  D +N I E
Sbjct:   31 WIEKYRPKTMDDIAHQDEVVAMLKKCISGSDFPNFLFYGPPGTGKTSTILAAAKDLFG-------LKYRDRV-----------------LELNASDERGISVIREKVKRFSQNSVSAKFRNGDDEKIIPSFKLIILDEADSMTTAAQSALRRTMEVECKTTRFCLICNYISKIIDPITSRCAKFRFKSLDRDVAISRLLTICAAENVNITQAVLSKLVEMSEGDLRQAITL-----LQRASLTAGKNAINEDLLNEIVE 260
The following BLAST results are available for this feature:
BLAST of replication factor C subunit 3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RFC32.873e-14759.01replication factor C subunit 3 [Source:HGNC Symbol... [more]
RFC31.304e-12758.36replication factor C subunit 3 [Source:HGNC Symbol... [more]
RFC33.930e-3052.43replication factor C subunit 3 [Source:HGNC Symbol... [more]
RFC53.484e-2330.47replication factor C subunit 5 [Source:HGNC Symbol... [more]
RFC21.656e-2129.02replication factor C subunit 2 [Source:HGNC Symbol... [more]
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BLAST of replication factor C subunit 3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4
Match NameE-valueIdentityDescription
rfc-32.179e-10746.11RFC (DNA replication factor) family [Source:UniPr... [more]
rfc-21.384e-1825.50RFC (DNA replication factor) family [Source:UniPr... [more]
F44B9.81.500e-1825.41Probable replication factor C subunit 5 [Source:U... [more]
rfc-43.118e-1726.09Replication factor C subunit 4 [Source:UniProtKB/... [more]
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BLAST of replication factor C subunit 3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RfC383.188e-13352.53gene:FBgn0028700 transcript:FBtr0080225[more]
RfC383.188e-13352.53gene:FBgn0028700 transcript:FBtr0344786[more]
RfC42.306e-2129.46gene:FBgn0260985 transcript:FBtr0073264[more]
CG81422.986e-1927.59gene:FBgn0030871 transcript:FBtr0074472[more]
RfC39.139e-1929.33gene:FBgn0032244 transcript:FBtr0080019[more]
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BLAST of replication factor C subunit 3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rfc34.481e-14659.01replication factor C (activator 1) 3 [Source:ZFIN;... [more]
rfc34.481e-14659.01replication factor C (activator 1) 3 [Source:ZFIN;... [more]
rfc36.833e-12856.10replication factor C (activator 1) 3 [Source:ZFIN;... [more]
rfc36.833e-12856.10replication factor C (activator 1) 3 [Source:ZFIN;... [more]
rfc51.271e-2432.90replication factor C (activator 1) 5 [Source:ZFIN;... [more]
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BLAST of replication factor C subunit 3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
znf804a9.116e-14959.30zinc finger protein 804A [Source:Xenbase;Acc:XB-GE... [more]
rfc51.456e-2230.29replication factor C subunit 5 [Source:NCBI gene;A... [more]
rfc51.475e-2230.17replication factor C subunit 5 [Source:NCBI gene;A... [more]
prokr11.534e-2229.02prokineticin receptor 1 [Source:Xenbase;Acc:XB-GEN... [more]
prokr12.115e-2229.02prokineticin receptor 1 [Source:Xenbase;Acc:XB-GEN... [more]
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BLAST of replication factor C subunit 3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rfc31.763e-14959.01replication factor C (activator 1) 3 [Source:MGI S... [more]
Rfc55.444e-2430.47replication factor C (activator 1) 5 [Source:MGI S... [more]
Rfc22.463e-2229.02replication factor C (activator 1) 2 [Source:MGI S... [more]
Rfc42.622e-1626.72replication factor C (activator 1) 4 [Source:MGI S... [more]
Rfc44.115e-1628.19replication factor C (activator 1) 4 [Source:MGI S... [more]
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BLAST of replication factor C subunit 3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q8R323|RFC3_MOUSE1.233e-14859.01Replication factor C subunit 3 OS=Mus musculus OX=... [more]
sp|Q2TBV1|RFC3_BOVIN4.151e-14759.30Replication factor C subunit 3 OS=Bos taurus OX=99... [more]
sp|P40938|RFC3_HUMAN1.380e-14659.01Replication factor C subunit 3 OS=Homo sapiens OX=... [more]
sp|Q8VXX4|RFC3_ARATH8.274e-10947.98Replication factor C subunit 3 OS=Arabidopsis thal... [more]
sp|Q8X082|RFC5_NEUCR1.396e-10747.88Replication factor C subunit 5 OS=Neurospora crass... [more]
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BLAST of replication factor C subunit 3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
R7U5X94.292e-15761.58AAA domain-containing protein OS=Capitella teleta ... [more]
A0A1S3KC081.944e-15360.34replication factor C subunit 3 OS=Lingula unguis O... [more]
T2MFG84.725e-15260.06Replication factor C subunit 3 OS=Hydra vulgaris O... [more]
T1J6353.726e-15159.77AAA domain-containing protein OS=Strigamia maritim... [more]
A0A0R3SHN12.241e-15060.47AAA domain-containing protein OS=Hymenolepis dimin... [more]
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BLAST of replication factor C subunit 3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rfc39.072e-14859.59replication factor C subunit 3 [Source:NCBI gene;A... [more]
rfc33.573e-12855.52replication factor C subunit 3 [Source:NCBI gene;A... [more]
rfc59.932e-2432.47replication factor C subunit 5 [Source:NCBI gene;A... [more]
rfc23.038e-2229.02replication factor C (activator 1) 2 [Source:ZFIN;... [more]
rfc23.071e-2229.02replication factor C (activator 1) 2 [Source:ZFIN;... [more]
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BLAST of replication factor C subunit 3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 4
Match NameE-valueIdentityDescription
rfc36.468e-14757.22replication factor C (activator 1) 3 [Source:ZFIN;... [more]
rfc57.717e-2130.17replication factor C (activator 1) 5 [Source:ZFIN;... [more]
ENSPMAT00000008618.17.974e-2029.07pep scaffold:Pmarinus_7.0:GL477502:54132:62470:-1 ... [more]
rfc43.735e-1327.41replication factor C (activator 1) 4 [Source:ZFIN;... [more]
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BLAST of replication factor C subunit 3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 4
Match NameE-valueIdentityDescription
RFC52.841e-8140.57Subunit of heteropentameric Replication factor C (... [more]
RFC31.807e-2531.62Subunit of heteropentameric Replication factor C (... [more]
RFC46.903e-2330.48Subunit of heteropentameric Replication factor C (... [more]
RFC22.461e-2127.46Subunit of heteropentameric Replication factor C (... [more]
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BLAST of replication factor C subunit 3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 4
Match NameE-valueIdentityDescription
EDO408235.195e-14456.66Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO411301.200e-2126.82Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO393856.062e-2128.57Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO409501.804e-2025.86Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of replication factor C subunit 3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rfc32.668e-14357.85replication factor C subunit 3 [Source:NCBI gene;A... [more]
rfc54.377e-2430.99replication factor C subunit 5 [Source:NCBI gene;A... [more]
rfc52.554e-2230.83replication factor C subunit 5 [Source:NCBI gene;A... [more]
rfc22.785e-2129.02replication factor C subunit 2 [Source:NCBI gene;A... [more]
rfc42.065e-1827.23replication factor C subunit 4 [Source:NCBI gene;A... [more]
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BLAST of replication factor C subunit 3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000020661.10.000e+0100.00SMESG000020661.1[more]
SMESG000020661.10.000e+088.20SMESG000020661.1[more]
SMESG000077027.13.097e-16299.59SMESG000077027.1[more]
SMESG000041132.18.250e-2129.46SMESG000041132.1[more]
SMESG000059207.12.047e-1926.64SMESG000059207.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30023617 ID=SMED30023617|Name=replication factor C subunit 3|organism=Schmidtea mediterranea sexual|type=transcript|length=1179bp
AAATATTTGTATATTTTTGATTTTTGAATTTAAAATATCTGAAGTATAAA
ATGAGTCTTTGGGCTGATAAGCATAAACCTTTGACTCTAAGCGAACTTGA
TTATCATAAAGACCAAGCTAACCGGATTCAAACACTTGTTACAAATGGAG
ATTTCCCACATTTATTAATTTGTGGTGCAGCTGGTTCCGGTAAAAAGACT
AGAATTCATTGCATTTTACGAGAGTTATATGGACAAGGAGTTGATAAGCT
ACGATTAGAACACCAAGAATTCGTCACTCCATCTCATAAAAAAATTGATA
TTAATTTAGTTGTTAGTAATTATCACATTGAAGTGAATCCTAGTGATGTT
GGAATTCATGATAGAGTTATTATTCAAGATCTAATTAAAAGTTCAGCATC
CACTTTACAATTAGATTCTATACAACAAAAAGAATTTAAAGTTATAGTCA
TGCATGAAGTTGATAAACTTACTCCTGATGCACAACATGCATTACGTAGG
ACAATGGAAAAATACATATCGTCTTGTCGTTTAATTCTTTGCGCTGAATC
AACTAATAAAATTATTCCCGCTATTCGTTCTCGATGCTTATTTATTAGAG
TTCCATCTCCATCTGAAAAAGAAATTGAAAAAATAATCATATCGACTTGT
CAGAAAGAAAGCCTTATAATTCCACGAGCTCTTGCTAAAAGAATCGCCGA
AGCATCAAAAGGAAATCTACGCCAAGGATTGTTGATTGCCGAAGCTTGCA
AAGTACAACAATATCCATTTACCGATAATCAATCTATTGTATTACCTGAT
TGGGTGAATTTTATCAAAGAAACAGTATCAATAATAATCAGTGAACAAAG
TCCGAAAAAATTGCTTGAAGTGAGGGGACGACTTTATGAATTGCTAGCTC
ATTGCATTCCAGAATCAACAATAATAAGAGAGCTCACCGATGAATTGGCA
GCATTTTGTGACTTGCCATTGAAACTGACGCTCTATCAGATCGCGGCCCA
ATATGAATATCAGATGAATCTCGGACAGAAAGCAATTTTCCATCTGGAAG
CATTTGTAGCTAAATTCATGTCGGTTTTCAAAAGTCATTTCAATGTTGCC
TCAATGGATGAATCCTTCTAGAAGGGGGGGGGGCAGGAAGGCAGAGAGAG
CGTTGCTCTGGAGATTAATTGTTATTGAC
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protein sequence of SMED30023617-orf-1

>SMED30023617-orf-1 ID=SMED30023617-orf-1|Name=SMED30023617-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=357bp
MSLWADKHKPLTLSELDYHKDQANRIQTLVTNGDFPHLLICGAAGSGKKT
RIHCILRELYGQGVDKLRLEHQEFVTPSHKKIDINLVVSNYHIEVNPSDV
GIHDRVIIQDLIKSSASTLQLDSIQQKEFKVIVMHEVDKLTPDAQHALRR
TMEKYISSCRLILCAESTNKIIPAIRSRCLFIRVPSPSEKEIEKIIISTC
QKESLIIPRALAKRIAEASKGNLRQGLLIAEACKVQQYPFTDNQSIVLPD
WVNFIKETVSIIISEQSPKKLLEVRGRLYELLAHCIPESTIIRELTDELA
AFCDLPLKLTLYQIAAQYEYQMNLGQKAIFHLEAFVAKFMSVFKSHFNVA
SMDESF*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast
PLANA:0000429neoblast
PLANA:0002089reproductive organ
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR008921DNA_pol3_clamp-load_cplx_C
Vocabulary: biological process
TermDefinition
GO:0006260DNA replication
GO:0006261DNA-dependent DNA replication
GO:0046683response to organophosphorus
GO:1900264positive regulation of DNA-directed DNA polymerase activity
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0003689DNA clamp loader activity
GO:0016887ATPase activity
GO:0043142single-stranded DNA-dependent ATPase activity
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
GO:0005663DNA replication factor C complex
GO:0031390Ctf18 RFC-like complex
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 1..187
e-value: 3.5E-51
score: 175.9
NoneNo IPR availableGENE3DG3DSA:1.20.272.10coord: 250..344
e-value: 3.3E-31
score: 109.2
NoneNo IPR availablePFAMPF13177DNA_pol3_delta2coord: 21..184
e-value: 5.5E-11
score: 42.5
NoneNo IPR availablePANTHERPTHR11669:SF1REPLICATION FACTOR C SUBUNIT 3coord: 3..346
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 3..346
NoneNo IPR availableCDDcd00009AAAcoord: 24..187
e-value: 1.17262E-6
score: 45.5999
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILYSSF48019post-AAA+ oligomerization domain-likecoord: 249..343
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILYSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..251